AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29396

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29396.t1 MTR_3g045430 85.761 309 24 3 1 300 1 298 0.0 508
MS.gene29396.t1 MTR_6g009430 36.311 347 163 9 1 300 1 336 6.70e-58 189
MS.gene29396.t1 MTR_3g461490 58.824 136 55 1 1 136 1 135 1.48e-49 167
MS.gene29396.t1 MTR_7g011170 54.264 129 58 1 1 129 1 128 5.79e-42 147
MS.gene29396.t1 MTR_2g011660 48.062 129 67 0 1 129 1 129 9.98e-42 147
MS.gene29396.t1 MTR_4g091490 47.761 134 70 0 1 134 1 134 4.04e-41 146
MS.gene29396.t1 MTR_1g085040 50.735 136 66 1 1 136 1 135 3.82e-40 144
MS.gene29396.t1 MTR_4g082290 52.713 129 60 1 1 129 1 128 6.26e-40 144
MS.gene29396.t1 MTR_5g029840 50.388 129 63 1 1 129 1 128 6.69e-40 142
MS.gene29396.t1 MTR_1g112760 50.000 130 65 0 1 130 1 130 1.11e-39 139
MS.gene29396.t1 MTR_1g085640 51.128 133 64 1 1 133 1 132 1.18e-39 143
MS.gene29396.t1 MTR_4g102380 50.000 132 65 1 1 132 1 131 1.70e-39 139
MS.gene29396.t1 MTR_7g110830 50.376 133 65 1 1 133 1 132 1.71e-39 142
MS.gene29396.t1 MTR_6g012690 51.163 129 62 1 1 129 1 128 6.12e-39 140
MS.gene29396.t1 MTR_4g082230 51.163 129 62 1 1 129 1 128 2.73e-38 139
MS.gene29396.t1 MTR_3g077110 50.806 124 61 0 7 130 6 129 3.61e-38 138
MS.gene29396.t1 MTR_3g074520 47.407 135 70 1 1 135 1 134 8.99e-38 137
MS.gene29396.t1 MTR_4g073420 45.865 133 71 1 1 133 1 132 2.51e-37 134
MS.gene29396.t1 MTR_4g478180 48.062 129 67 0 1 129 1 129 3.01e-37 135
MS.gene29396.t1 MTR_4g105130 49.242 132 66 1 1 132 1 131 3.57e-37 135
MS.gene29396.t1 MTR_5g078140 48.092 131 67 1 1 131 1 130 5.33e-37 134
MS.gene29396.t1 MTR_7g076740 47.059 136 70 2 1 135 1 135 8.32e-37 133
MS.gene29396.t1 MTR_5g007370 35.776 232 120 5 1 226 1 209 1.04e-36 133
MS.gene29396.t1 MTR_3g065440 47.794 136 70 1 1 136 1 135 1.05e-36 133
MS.gene29396.t1 MTR_2g089620 45.736 129 69 1 1 129 1 128 1.40e-36 133
MS.gene29396.t1 MTR_8g095390 46.617 133 70 1 1 133 1 132 3.07e-36 132
MS.gene29396.t1 MTR_4g057635 53.077 130 57 4 1 128 1 128 1.11e-35 131
MS.gene29396.t1 MTR_5g079670 41.935 155 85 2 2 156 1 150 1.13e-35 128
MS.gene29396.t1 MTR_8g031360 46.970 132 69 1 1 131 1 132 1.93e-35 129
MS.gene29396.t1 MTR_3g097450 45.802 131 70 1 1 131 1 130 2.22e-35 129
MS.gene29396.t1 MTR_2g064160 47.200 125 66 0 7 131 5 129 8.87e-35 128
MS.gene29396.t1 MTR_7g111290 51.515 132 63 1 1 132 1 131 1.34e-34 129
MS.gene29396.t1 MTR_5g042030 47.059 119 63 0 13 131 7 125 1.99e-34 127
MS.gene29396.t1 MTR_3g103570 53.390 118 53 2 1 117 1 117 2.17e-34 128
MS.gene29396.t1 MTR_5g014990 52.542 118 54 2 1 117 1 117 2.18e-34 127
MS.gene29396.t1 MTR_0008s0390 47.414 116 61 0 1 116 1 116 2.48e-34 126
MS.gene29396.t1 MTR_0251s0050 45.902 122 66 0 1 122 1 122 2.94e-34 126
MS.gene29396.t1 MTR_4g485530 44.444 126 70 0 2 127 1 126 4.43e-34 123
MS.gene29396.t1 MTR_1g017140 51.695 118 55 2 1 117 1 117 9.39e-34 126
MS.gene29396.t1 MTR_1g017000 53.782 119 51 4 1 117 1 117 9.87e-34 124
MS.gene29396.t1 MTR_3g083540 45.968 124 67 0 7 130 35 158 2.09e-33 124
MS.gene29396.t1 MTR_0008s0470 46.552 116 62 0 1 116 1 116 9.45e-33 122
MS.gene29396.t1 MTR_1g076150 50.420 119 58 1 1 119 1 118 1.47e-32 121
MS.gene29396.t1 MTR_7g102110 52.066 121 56 2 1 120 1 120 1.59e-32 121
MS.gene29396.t1 MTR_1g043080 40.491 163 87 3 1 154 1 162 2.63e-32 120
MS.gene29396.t1 MTR_4g121460 48.718 117 59 1 1 117 1 116 3.32e-32 122
MS.gene29396.t1 MTR_1g100653 47.059 119 62 1 1 119 1 118 4.49e-32 120
MS.gene29396.t1 MTR_1g043050 47.009 117 61 1 1 117 1 116 9.07e-32 119
MS.gene29396.t1 MTR_8g017440 43.972 141 72 2 1 135 1 140 1.54e-31 120
MS.gene29396.t1 MTR_6g090405 52.137 117 54 2 1 116 1 116 4.57e-31 117
MS.gene29396.t1 MTR_8g017540 45.390 141 75 2 1 141 47 185 4.62e-31 120
MS.gene29396.t1 MTR_2g089450 42.857 119 67 1 1 119 1 118 8.95e-31 116
MS.gene29396.t1 MTR_8g098860 46.429 112 60 0 6 117 5 116 1.53e-30 117
MS.gene29396.t1 MTR_4g097570 50.450 111 53 2 1 110 1 110 1.96e-30 116
MS.gene29396.t1 MTR_3g039990 48.333 120 61 1 1 120 2 120 2.01e-30 117
MS.gene29396.t1 MTR_7g010210 48.780 123 60 2 1 121 1 122 2.63e-30 115
MS.gene29396.t1 MTR_7g117730 46.154 117 62 1 1 117 1 116 3.39e-30 115
MS.gene29396.t1 MTR_2g099740 44.361 133 73 1 1 133 1 132 3.43e-30 118
MS.gene29396.t1 MTR_7g010210 48.780 123 60 2 1 121 1 122 4.16e-30 116
MS.gene29396.t1 MTR_4g125520 45.000 120 65 1 1 120 1 119 4.58e-30 115
MS.gene29396.t1 MTR_8g017500 42.857 140 79 1 2 141 1 139 4.73e-30 116
MS.gene29396.t1 MTR_2g095520 50.000 112 54 2 1 111 1 111 5.57e-30 115
MS.gene29396.t1 MTR_2g034790 46.154 117 62 1 1 117 1 116 8.42e-30 115
MS.gene29396.t1 MTR_7g087130 46.825 126 64 2 1 124 1 125 9.26e-30 115
MS.gene29396.t1 MTR_2g089420 43.590 117 64 2 1 117 1 115 2.22e-29 116
MS.gene29396.t1 MTR_7g096930 46.218 119 63 1 1 119 1 118 2.56e-29 113
MS.gene29396.t1 MTR_0140s0030 47.899 119 61 1 1 119 2 119 3.10e-29 114
MS.gene29396.t1 MTR_0489s0020 47.899 119 61 1 1 119 2 119 3.10e-29 114
MS.gene29396.t1 MTR_8g027345 44.538 119 65 1 1 119 1 118 3.14e-29 113
MS.gene29396.t1 MTR_7g115650 45.378 119 64 1 1 119 1 118 8.55e-29 109
MS.gene29396.t1 MTR_4g097570 50.000 112 53 3 1 110 1 111 9.00e-29 112
MS.gene29396.t1 MTR_4g128670 50.000 112 54 2 1 111 1 111 9.19e-29 113
MS.gene29396.t1 MTR_1g100667 44.444 117 64 1 14 130 14 129 1.03e-28 111
MS.gene29396.t1 MTR_1g086530 45.690 116 63 0 8 123 28 143 1.17e-28 111
MS.gene29396.t1 MTR_4g100720 44.248 113 63 0 12 124 12 124 1.26e-28 108
MS.gene29396.t1 MTR_5g010020 46.226 106 57 0 6 111 5 110 1.62e-28 112
MS.gene29396.t1 MTR_1g045610 49.524 105 53 0 12 116 20 124 2.48e-28 110
MS.gene29396.t1 MTR_0063s0090 43.860 114 63 1 1 114 1 113 3.46e-28 108
MS.gene29396.t1 MTR_3g011610 43.478 115 65 0 2 116 26 140 4.09e-28 113
MS.gene29396.t1 MTR_6g012180 48.649 111 56 1 1 111 1 110 4.30e-28 110
MS.gene29396.t1 MTR_8g017390 40.000 190 108 6 1 189 1 185 8.01e-28 112
MS.gene29396.t1 MTR_1g110460 33.028 218 122 5 13 225 26 224 1.04e-27 109
MS.gene29396.t1 MTR_2g097910 42.593 108 62 0 13 120 20 127 1.26e-27 109
MS.gene29396.t1 MTR_3g052430 44.860 107 59 0 13 119 41 147 2.17e-27 111
MS.gene29396.t1 MTR_4g065017 40.164 122 73 0 2 123 6 127 4.19e-27 108
MS.gene29396.t1 MTR_1g073170 47.573 103 54 0 14 116 21 123 5.89e-27 106
MS.gene29396.t1 MTR_7g035075 41.026 117 69 0 3 119 4 120 5.99e-27 105
MS.gene29396.t1 MTR_6g055910 47.170 106 56 0 11 116 12 117 7.94e-27 106
MS.gene29396.t1 MTR_8g042410 42.593 108 62 0 9 116 33 140 1.07e-26 109
MS.gene29396.t1 MTR_6g006030 43.519 108 61 0 13 120 14 121 1.32e-26 104
MS.gene29396.t1 MTR_8g017340 44.000 125 68 2 1 124 1 124 1.47e-26 108
MS.gene29396.t1 MTR_8g020490 42.857 119 63 1 1 119 1 114 1.79e-26 105
MS.gene29396.t1 MTR_3g052450 42.991 107 61 0 13 119 40 146 1.79e-26 108
MS.gene29396.t1 MTR_3g028740 43.925 107 60 0 11 117 20 126 2.42e-26 106
MS.gene29396.t1 MTR_2g067420 45.872 109 58 1 3 111 5 112 3.97e-26 105
MS.gene29396.t1 MTR_1g086510 38.931 131 79 1 4 134 12 141 5.56e-26 103
MS.gene29396.t1 MTR_8g017350 43.200 125 69 2 1 124 1 124 6.03e-26 107
MS.gene29396.t1 MTR_4g063100 43.519 108 61 0 12 119 6 113 1.10e-25 102
MS.gene29396.t1 MTR_0247s0040 44.231 104 58 0 11 114 5 108 2.07e-25 100
MS.gene29396.t1 MTR_1g062940 43.810 105 59 0 13 117 6 110 2.36e-25 101
MS.gene29396.t1 MTR_7g111290 59.091 88 36 0 45 132 2 89 2.55e-25 103
MS.gene29396.t1 MTR_5g079120 40.517 116 69 0 2 117 50 165 2.73e-25 102
MS.gene29396.t1 MTR_0008s0280 40.870 115 67 1 1 115 1 114 3.58e-25 100
MS.gene29396.t1 MTR_5g078910 42.727 110 63 0 8 117 2 111 4.93e-25 102
MS.gene29396.t1 MTR_1g083630 43.636 110 61 1 13 122 12 120 1.22e-24 103
MS.gene29396.t1 MTR_3g101290 41.406 128 65 2 15 142 37 154 1.40e-24 99.4
MS.gene29396.t1 MTR_5g078800 42.727 110 63 0 8 117 2 111 1.87e-24 99.8
MS.gene29396.t1 MTR_1g021230 44.231 104 58 0 13 116 57 160 2.36e-24 102
MS.gene29396.t1 MTR_5g079220 41.284 109 64 0 9 117 17 125 4.51e-24 99.0
MS.gene29396.t1 MTR_5g078860 42.727 110 63 0 8 117 2 111 4.83e-24 99.8
MS.gene29396.t1 MTR_5g016510 32.323 198 121 5 15 203 5 198 5.94e-24 99.4
MS.gene29396.t1 MTR_2g096380 43.269 104 59 0 13 116 6 109 7.00e-24 97.8
MS.gene29396.t1 MTR_5g088610 34.568 162 71 4 14 141 10 170 9.18e-24 99.8
MS.gene29396.t1 MTR_0193s0090 41.121 107 63 0 11 117 5 111 1.06e-23 96.3
MS.gene29396.t1 MTR_5g078930 43.243 111 62 1 7 116 2 112 1.08e-23 96.7
MS.gene29396.t1 MTR_5g488170 40.179 112 65 2 14 124 13 123 1.15e-23 97.4
MS.gene29396.t1 MTR_5g088640 40.179 112 65 2 14 124 13 123 1.73e-23 97.4
MS.gene29396.t1 MTR_5g088080 40.179 112 65 2 14 124 13 123 1.91e-23 97.1
MS.gene29396.t1 MTR_5g088150 40.179 112 65 2 14 124 13 123 1.91e-23 97.1
MS.gene29396.t1 MTR_5g488210 40.179 112 65 2 14 124 13 123 1.91e-23 97.1
MS.gene29396.t1 MTR_5g079290 40.952 105 62 0 13 117 17 121 2.08e-23 97.1
MS.gene29396.t1 MTR_8g060940 41.509 106 62 0 8 113 2 107 5.09e-23 95.5
MS.gene29396.t1 MTR_5g062790 41.071 112 64 2 14 124 10 120 6.20e-23 96.7
MS.gene29396.t1 MTR_4g019370 43.411 129 63 6 15 142 38 157 1.16e-22 96.7
MS.gene29396.t1 MTR_7g109320 44.444 117 64 1 1 117 1 116 1.20e-22 96.7
MS.gene29396.t1 MTR_5g078950 42.718 103 59 0 12 114 6 108 2.48e-22 94.0
MS.gene29396.t1 MTR_2g088170 43.269 104 59 0 13 116 29 132 3.28e-22 96.3
MS.gene29396.t1 MTR_2g033170 41.525 118 68 1 13 130 24 140 3.83e-22 94.7
MS.gene29396.t1 MTR_0001s0360 40.952 105 62 0 13 117 7 111 8.14e-22 92.4
MS.gene29396.t1 MTR_7g017260 42.056 107 60 1 13 117 25 131 1.53e-21 92.0
MS.gene29396.t1 MTR_0197s0010 42.991 107 61 0 17 123 5 111 1.54e-21 91.3
MS.gene29396.t1 MTR_8g006470 39.450 109 64 2 13 120 10 117 5.11e-21 90.9
MS.gene29396.t1 MTR_4g029540 41.346 104 60 1 13 115 10 113 1.89e-20 89.7
MS.gene29396.t1 MTR_6g015455 41.441 111 64 1 15 125 5 114 2.27e-20 92.0
MS.gene29396.t1 MTR_4g094982 39.423 104 62 1 15 118 5 107 2.63e-20 88.6
MS.gene29396.t1 MTR_4g063100 52.000 75 36 0 45 119 10 84 2.65e-20 87.8
MS.gene29396.t1 MTR_4g123040 40.476 126 74 1 5 130 16 140 3.80e-20 89.0
MS.gene29396.t1 MTR_5g070020 34.188 117 76 1 3 119 110 225 1.32e-19 88.2
MS.gene29396.t1 MTR_6g055910 53.521 71 33 0 46 116 18 88 1.86e-19 85.9
MS.gene29396.t1 MTR_4g128190 30.688 189 100 4 4 179 2 172 2.17e-19 85.5
MS.gene29396.t1 MTR_6g074860 35.294 136 79 4 12 146 1 128 3.65e-19 85.1
MS.gene29396.t1 MTR_2g096380 48.148 81 42 0 36 116 10 90 7.48e-19 83.6
MS.gene29396.t1 MTR_5g041570 38.393 112 66 3 9 119 128 237 1.00e-18 86.3
MS.gene29396.t1 MTR_3g463400 36.154 130 78 4 11 137 130 257 1.19e-18 86.3
MS.gene29396.t1 MTR_4g105660 32.479 117 78 1 3 119 168 283 1.91e-18 85.5
MS.gene29396.t1 MTR_4g082040 37.615 109 65 3 12 119 102 208 3.82e-18 84.3
MS.gene29396.t1 MTR_3g089045 40.351 114 65 3 4 116 5 116 1.13e-17 81.6
MS.gene29396.t1 MTR_5g082910 37.273 110 68 1 4 113 8 116 1.74e-17 81.3
MS.gene29396.t1 MTR_3g077650 34.286 105 68 1 15 119 181 284 2.01e-17 82.4
MS.gene29396.t1 MTR_7g061330 38.889 108 65 1 10 117 108 214 6.10e-17 81.3
MS.gene29396.t1 MTR_7g461410 38.889 108 65 1 10 117 108 214 6.10e-17 81.3
MS.gene29396.t1 MTR_7g061330 38.889 108 65 1 10 117 72 178 7.09e-17 81.3
MS.gene29396.t1 MTR_7g086960 41.748 103 57 3 15 116 89 189 2.61e-16 78.6
MS.gene29396.t1 MTR_5g049190 33.945 109 71 1 11 119 15 122 5.49e-16 76.3
MS.gene29396.t1 MTR_1g085880 38.938 113 67 2 5 115 3 115 7.74e-16 74.7
MS.gene29396.t1 MTR_3g110028 34.259 108 70 1 10 117 80 186 1.05e-15 77.8
MS.gene29396.t1 MTR_7g037260 32.692 104 69 1 13 116 143 245 1.29e-15 76.6
MS.gene29396.t1 MTR_1g085770 38.938 113 67 2 5 115 3 115 2.07e-15 75.5
MS.gene29396.t1 MTR_6g027340 34.615 104 65 3 9 111 10 111 2.41e-15 73.6
MS.gene29396.t1 MTR_6g027370 37.383 107 64 3 15 120 99 203 2.80e-15 75.5
MS.gene29396.t1 MTR_1g026870 33.333 108 71 1 10 117 80 186 3.76e-15 76.3
MS.gene29396.t1 MTR_7g035350 35.000 100 63 2 12 111 223 320 4.88e-15 75.5
MS.gene29396.t1 MTR_7g451170 31.373 102 69 1 15 116 191 291 8.49e-15 74.7
MS.gene29396.t1 MTR_6g027360 34.615 104 65 3 9 111 72 173 1.74e-14 72.8
MS.gene29396.t1 MTR_7g037130 33.945 109 66 2 13 116 143 250 5.26e-14 72.0
MS.gene29396.t1 MTR_4g088015 29.907 107 74 1 9 115 215 320 2.11e-13 70.5
MS.gene29396.t1 MTR_5g007300 37.975 79 49 0 11 89 62 140 2.17e-13 66.6
MS.gene29396.t1 MTR_7g450950 28.682 129 91 1 9 137 151 278 5.61e-13 68.9
MS.gene29396.t1 MTR_5g010650 38.000 100 58 4 12 110 108 204 1.03e-12 68.6
MS.gene29396.t1 MTR_4g063100 55.102 49 22 0 71 119 1 49 1.37e-12 65.5
MS.gene29396.t1 MTR_1g057980 31.313 99 67 1 13 111 78 175 1.59e-12 67.0
MS.gene29396.t1 MTR_6g055910 58.696 46 19 0 71 116 2 47 3.20e-12 65.1
MS.gene29396.t1 MTR_5g007310 46.988 83 23 4 99 162 6 86 1.23e-11 63.5
MS.gene29396.t1 MTR_7g061550 29.545 132 85 3 15 138 7 138 2.70e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29396.t1 AT3G28470 39.697 330 149 9 1 296 1 314 3.44e-57 187
MS.gene29396.t1 AT5G56110 59.854 137 52 3 1 136 1 135 3.58e-49 166
MS.gene29396.t1 AT1G18960 36.937 333 151 12 1 300 1 307 1.61e-48 164
MS.gene29396.t1 AT4G21440 48.507 134 68 1 1 134 1 133 4.84e-41 145
MS.gene29396.t1 AT5G15310 52.713 129 60 1 1 129 1 128 6.49e-41 142
MS.gene29396.t1 AT4G17785 51.163 129 63 0 1 129 1 129 9.79e-41 145
MS.gene29396.t1 AT4G17785 51.163 129 63 0 1 129 1 129 1.21e-40 145
MS.gene29396.t1 AT4G05100 48.062 129 67 0 1 129 1 129 2.10e-40 143
MS.gene29396.t1 AT3G01140 53.125 128 59 1 1 128 1 127 2.83e-40 144
MS.gene29396.t1 AT5G15310 52.713 129 60 1 1 129 1 128 3.82e-40 142
MS.gene29396.t1 AT5G15310 52.713 129 60 1 1 129 1 128 4.06e-40 142
MS.gene29396.t1 AT4G28110 48.837 129 65 1 1 129 1 128 7.40e-40 140
MS.gene29396.t1 AT1G57560 50.000 132 65 1 1 132 1 131 8.20e-40 140
MS.gene29396.t1 AT1G57560 49.624 133 66 1 1 133 1 132 9.86e-40 141
MS.gene29396.t1 AT3G01140 52.344 128 60 1 1 128 44 170 2.24e-39 142
MS.gene29396.t1 AT1G18710 48.120 133 63 1 13 139 12 144 4.21e-39 138
MS.gene29396.t1 AT5G61420 48.800 125 64 0 7 131 6 130 7.77e-39 140
MS.gene29396.t1 AT5G65230 48.837 129 65 1 1 129 1 128 1.76e-38 138
MS.gene29396.t1 AT4G34990 48.485 132 67 1 1 132 1 131 1.93e-38 137
MS.gene29396.t1 AT5G16770 49.612 129 64 1 1 129 1 128 2.11e-38 138
MS.gene29396.t1 AT5G16770 49.612 129 64 1 1 129 1 128 2.11e-38 138
MS.gene29396.t1 AT5G07690 49.600 125 63 0 7 131 6 130 2.91e-38 138
MS.gene29396.t1 AT5G16770 49.612 129 64 1 1 129 1 128 2.94e-38 138
MS.gene29396.t1 AT5G16770 49.612 129 64 1 1 129 1 128 2.94e-38 138
MS.gene29396.t1 AT1G74430 51.282 117 57 0 13 129 12 128 3.14e-38 136
MS.gene29396.t1 AT4G01680 48.872 133 67 1 1 133 1 132 3.28e-38 135
MS.gene29396.t1 AT1G09540 50.376 133 65 1 1 133 1 132 3.43e-38 139
MS.gene29396.t1 AT5G26660 50.769 130 63 1 1 130 1 129 3.51e-38 138
MS.gene29396.t1 AT1G18570 48.092 131 68 0 1 131 1 131 6.72e-38 137
MS.gene29396.t1 AT3G02940 48.837 129 65 1 1 129 1 128 6.80e-38 136
MS.gene29396.t1 AT3G02940 48.837 129 65 1 1 129 1 128 9.16e-38 136
MS.gene29396.t1 AT3G02940 48.837 129 65 1 1 129 1 128 9.16e-38 136
MS.gene29396.t1 AT5G60890 48.462 130 66 1 1 130 1 129 9.47e-38 135
MS.gene29396.t1 AT4G01680 48.872 133 67 1 1 133 1 132 9.83e-38 137
MS.gene29396.t1 AT1G34670 48.148 135 69 1 1 135 1 134 1.10e-37 137
MS.gene29396.t1 AT1G66230 48.092 131 67 1 1 131 1 130 2.32e-37 134
MS.gene29396.t1 AT5G07700 50.420 119 59 0 13 131 12 130 2.66e-37 135
MS.gene29396.t1 AT5G07700 50.420 119 59 0 13 131 12 130 2.66e-37 135
MS.gene29396.t1 AT4G12350 46.324 136 72 1 1 136 1 135 6.61e-37 133
MS.gene29396.t1 AT3G13540 48.438 128 66 0 3 130 13 140 8.48e-37 132
MS.gene29396.t1 AT5G10280 35.211 213 123 3 5 212 4 206 1.55e-36 133
MS.gene29396.t1 AT5G54230 49.180 122 62 0 13 134 12 133 1.63e-36 133
MS.gene29396.t1 AT4G38620 46.154 130 69 1 1 130 1 129 4.81e-36 131
MS.gene29396.t1 AT4G22680 46.212 132 70 1 1 132 1 131 8.86e-36 130
MS.gene29396.t1 AT2G16720 46.875 128 67 1 1 128 1 127 1.47e-35 129
MS.gene29396.t1 AT5G14750 51.282 117 57 0 2 118 5 121 2.43e-35 127
MS.gene29396.t1 AT5G16600 41.566 166 96 1 1 166 1 165 4.46e-35 129
MS.gene29396.t1 AT3G61250 46.154 130 69 1 1 130 1 129 4.80e-35 129
MS.gene29396.t1 AT1G35515 48.031 127 65 1 1 127 1 126 5.56e-35 126
MS.gene29396.t1 AT1G74080 45.385 130 70 1 1 130 1 129 7.27e-35 129
MS.gene29396.t1 AT4G01680 44.828 145 67 2 1 133 1 144 2.06e-34 128
MS.gene29396.t1 AT1G22640 45.312 128 69 1 1 128 1 127 2.20e-34 125
MS.gene29396.t1 AT4G09460 46.094 128 68 1 1 128 1 127 4.52e-34 124
MS.gene29396.t1 AT4G37780 52.542 118 54 2 1 117 1 117 6.70e-34 125
MS.gene29396.t1 AT5G14340 45.865 133 71 1 1 133 13 144 8.60e-34 125
MS.gene29396.t1 AT5G52600 45.802 131 62 1 8 129 7 137 1.07e-33 122
MS.gene29396.t1 AT3G27920 48.276 116 60 0 2 117 3 118 2.20e-33 122
MS.gene29396.t1 AT5G40330 52.381 105 50 0 14 118 13 117 2.59e-33 122
MS.gene29396.t1 AT5G62320 43.796 137 69 2 3 132 4 139 3.36e-33 122
MS.gene29396.t1 AT3G49690 52.542 118 54 2 1 117 1 117 7.11e-33 123
MS.gene29396.t1 AT5G23000 55.000 120 48 5 1 117 1 117 3.23e-32 122
MS.gene29396.t1 AT5G57620 50.847 118 56 2 1 117 1 117 4.20e-32 122
MS.gene29396.t1 AT3G12720 47.107 121 63 1 7 127 17 136 7.59e-32 120
MS.gene29396.t1 AT2G36890 49.612 129 61 4 1 127 1 127 9.77e-32 120
MS.gene29396.t1 AT5G65790 50.000 118 57 2 1 117 1 117 1.96e-31 120
MS.gene29396.t1 AT2G36890 49.612 129 61 4 1 127 42 168 2.41e-31 120
MS.gene29396.t1 AT1G79180 51.282 117 56 1 3 119 5 120 2.98e-31 118
MS.gene29396.t1 AT3G23250 49.573 117 58 1 1 117 1 116 4.16e-31 118
MS.gene29396.t1 AT2G47460 44.776 134 73 1 1 134 1 133 1.09e-30 119
MS.gene29396.t1 AT3G47600 49.167 120 60 1 1 120 1 119 1.19e-30 118
MS.gene29396.t1 AT3G28910 47.967 123 63 1 1 123 1 122 1.96e-30 117
MS.gene29396.t1 AT1G16490 49.138 116 58 1 3 118 5 119 1.96e-30 116
MS.gene29396.t1 AT5G55020 48.148 108 56 0 12 119 25 132 2.03e-30 120
MS.gene29396.t1 AT5G62470 50.000 120 59 1 1 120 1 119 2.14e-30 117
MS.gene29396.t1 AT3G62610 48.718 117 59 1 1 117 1 116 3.59e-30 117
MS.gene29396.t1 AT1G63910 42.742 124 71 0 6 129 5 128 4.60e-30 117
MS.gene29396.t1 AT3G13890 47.863 117 60 1 1 117 1 116 8.54e-30 116
MS.gene29396.t1 AT5G26660 54.839 93 42 0 38 130 6 98 9.46e-30 115
MS.gene29396.t1 AT4G26930 48.077 104 54 0 12 115 18 121 1.04e-29 116
MS.gene29396.t1 AT2G31180 47.899 119 61 1 1 119 1 118 1.79e-29 112
MS.gene29396.t1 AT5G12870 46.296 108 58 0 13 120 18 125 2.02e-29 113
MS.gene29396.t1 AT1G74650 49.167 120 60 1 1 120 1 119 2.11e-29 114
MS.gene29396.t1 AT5G49330 47.863 117 60 1 1 117 1 116 2.11e-29 114
MS.gene29396.t1 AT1G06180 48.718 117 59 1 1 117 1 116 2.94e-29 112
MS.gene29396.t1 AT1G56160 47.414 116 60 1 3 118 5 119 3.34e-29 113
MS.gene29396.t1 AT3G12820 47.826 115 60 0 3 117 4 118 5.67e-29 111
MS.gene29396.t1 AT1G08810 47.899 119 61 1 1 119 1 118 1.41e-28 111
MS.gene29396.t1 AT2G47190 42.500 120 69 0 4 123 11 130 1.91e-28 110
MS.gene29396.t1 AT3G11440 44.444 108 60 0 9 116 37 144 2.24e-28 114
MS.gene29396.t1 AT5G62470 50.000 120 58 2 1 120 1 118 2.36e-28 112
MS.gene29396.t1 AT3G11440 44.444 108 60 0 9 116 37 144 5.87e-28 113
MS.gene29396.t1 AT3G11440 44.444 108 60 0 9 116 37 144 5.87e-28 113
MS.gene29396.t1 AT3G11440 44.444 108 60 0 9 116 37 144 5.87e-28 113
MS.gene29396.t1 AT5G35550 40.870 115 68 0 3 117 4 118 7.05e-28 108
MS.gene29396.t1 AT2G32460 45.192 104 57 0 13 116 6 109 1.02e-27 112
MS.gene29396.t1 AT2G32460 45.192 104 57 0 13 116 18 121 1.13e-27 112
MS.gene29396.t1 AT1G48000 44.262 122 67 1 13 134 32 152 2.63e-27 107
MS.gene29396.t1 AT4G13480 49.524 105 53 0 12 116 5 109 2.70e-27 107
MS.gene29396.t1 AT3G01530 42.982 114 65 0 4 117 16 129 3.29e-27 105
MS.gene29396.t1 AT1G25340 42.149 121 70 0 8 128 13 133 3.60e-27 107
MS.gene29396.t1 AT3G13890 44.444 126 60 2 1 117 1 125 6.07e-27 108
MS.gene29396.t1 AT1G68320 42.149 121 70 0 13 133 19 139 1.24e-26 106
MS.gene29396.t1 AT5G06100 44.762 105 58 0 12 116 31 135 1.76e-26 108
MS.gene29396.t1 AT3G24310 47.573 103 54 0 14 116 19 121 3.47e-26 104
MS.gene29396.t1 AT5G06100 44.762 105 58 0 12 116 31 135 4.31e-26 107
MS.gene29396.t1 AT5G06100 44.762 105 58 0 12 116 31 135 4.31e-26 107
MS.gene29396.t1 AT5G06100 44.762 105 58 0 12 116 31 135 4.31e-26 107
MS.gene29396.t1 AT5G06100 44.762 105 58 0 12 116 31 135 4.31e-26 107
MS.gene29396.t1 AT2G26960 31.771 192 123 3 4 188 8 198 9.28e-26 106
MS.gene29396.t1 AT3G27810 42.991 107 61 0 13 119 20 126 1.03e-25 102
MS.gene29396.t1 AT3G08500 44.762 105 58 0 13 117 30 134 1.22e-25 104
MS.gene29396.t1 AT5G40350 43.119 109 62 0 13 121 17 125 1.30e-25 101
MS.gene29396.t1 AT4G25560 45.631 103 56 0 14 116 11 113 1.65e-25 103
MS.gene29396.t1 AT1G79180 40.000 150 56 2 3 119 5 153 3.18e-25 103
MS.gene29396.t1 AT5G59780 45.631 103 56 0 14 116 9 111 1.95e-24 99.0
MS.gene29396.t1 AT3G30210 43.689 103 58 0 13 115 27 129 2.08e-24 100
MS.gene29396.t1 AT1G66370 45.192 104 57 0 13 116 8 111 6.15e-24 98.2
MS.gene29396.t1 AT3G46130 44.660 103 57 0 14 116 10 112 6.42e-24 98.2
MS.gene29396.t1 AT3G48920 40.952 105 62 0 14 118 19 123 1.01e-23 97.8
MS.gene29396.t1 AT3G53200 40.288 139 73 3 9 146 5 134 1.78e-23 96.7
MS.gene29396.t1 AT5G14750 54.217 83 33 1 41 118 5 87 3.62e-23 94.0
MS.gene29396.t1 AT3G06490 41.803 122 71 0 2 123 8 129 4.57e-23 97.4
MS.gene29396.t1 AT1G71030 48.352 91 46 1 38 128 6 95 4.87e-23 94.4
MS.gene29396.t1 AT5G52260 44.660 103 57 0 14 116 13 115 9.42e-23 95.5
MS.gene29396.t1 AT1G71030 51.899 79 38 0 50 128 3 81 1.22e-22 92.8
MS.gene29396.t1 AT1G25340 39.669 121 68 1 8 128 13 128 1.51e-22 95.1
MS.gene29396.t1 AT1G25340 39.669 121 68 1 8 128 13 128 3.17e-22 94.7
MS.gene29396.t1 AT5G35550 54.167 72 33 0 46 117 50 121 5.25e-22 93.2
MS.gene29396.t1 AT5G49620 42.342 111 64 0 13 123 26 136 1.78e-21 92.8
MS.gene29396.t1 AT5G59780 49.438 89 40 1 28 116 7 90 2.26e-21 90.5
MS.gene29396.t1 AT3G60460 41.667 108 62 1 9 115 7 114 2.40e-21 92.0
MS.gene29396.t1 AT2G23290 44.231 104 57 1 15 118 13 115 2.55e-21 92.4
MS.gene29396.t1 AT2G26950 35.766 137 83 3 18 150 21 156 5.23e-21 92.4
MS.gene29396.t1 AT1G66380 46.154 104 56 0 13 116 8 111 6.02e-21 87.0
MS.gene29396.t1 AT3G47600 53.333 75 35 0 46 120 39 113 2.70e-20 89.7
MS.gene29396.t1 AT4G37260 37.162 148 79 4 4 150 2 136 2.77e-20 89.7
MS.gene29396.t1 AT5G67300 41.346 104 60 1 15 118 6 108 3.39e-20 89.0
MS.gene29396.t1 AT3G46130 50.602 83 40 1 44 126 18 99 3.79e-20 87.4
MS.gene29396.t1 AT3G46130 51.220 82 39 1 45 126 9 89 4.38e-20 87.0
MS.gene29396.t1 AT1G69560 36.667 120 73 3 1 119 93 210 6.25e-20 88.6
MS.gene29396.t1 AT1G69560 36.667 120 73 3 1 119 109 226 6.49e-20 89.0
MS.gene29396.t1 AT1G26780 40.367 109 62 3 12 119 95 201 6.96e-20 87.8
MS.gene29396.t1 AT3G12820 56.522 69 30 0 49 117 2 70 8.40e-20 85.5
MS.gene29396.t1 AT1G26780 40.367 109 62 3 12 119 95 201 1.20e-19 88.2
MS.gene29396.t1 AT3G27810 50.000 74 37 0 46 119 4 77 1.45e-19 84.7
MS.gene29396.t1 AT3G50060 41.346 104 60 1 15 118 6 108 2.22e-19 86.7
MS.gene29396.t1 AT2G39880 42.056 107 57 4 15 119 50 153 2.67e-19 87.4
MS.gene29396.t1 AT5G40350 50.000 76 38 0 46 121 5 80 3.62e-19 83.2
MS.gene29396.t1 AT1G22640 56.897 58 25 0 71 128 13 70 3.66e-19 84.0
MS.gene29396.t1 AT3G55730 40.741 108 59 4 15 120 56 160 5.73e-19 86.7
MS.gene29396.t1 AT1G56650 40.496 121 62 1 13 133 8 118 5.90e-19 84.7
MS.gene29396.t1 AT5G17800 34.228 149 93 4 2 149 80 224 9.42e-19 85.1
MS.gene29396.t1 AT1G17950 40.566 106 60 3 12 116 2 105 1.03e-18 84.0
MS.gene29396.t1 AT1G66390 43.269 104 59 0 13 116 8 111 1.80e-18 83.2
MS.gene29396.t1 AT3G27785 35.294 119 76 1 1 119 175 292 2.07e-18 85.5
MS.gene29396.t1 AT3G29020 37.615 109 65 3 12 119 62 168 2.23e-18 82.8
MS.gene29396.t1 AT3G53200 41.837 98 49 1 44 141 7 96 2.61e-18 82.0
MS.gene29396.t1 AT5G49620 37.600 125 64 1 13 123 26 150 5.51e-18 83.2
MS.gene29396.t1 AT5G02320 40.741 108 63 1 10 117 122 228 6.30e-18 84.3
MS.gene29396.t1 AT5G02320 40.741 108 63 1 10 117 122 228 6.30e-18 84.3
MS.gene29396.t1 AT3G29020 37.615 109 65 3 12 119 64 170 7.60e-18 82.4
MS.gene29396.t1 AT1G73410 42.453 106 58 3 15 119 6 109 8.13e-18 80.5
MS.gene29396.t1 AT5G02320 40.741 108 63 1 10 117 62 168 8.88e-18 83.6
MS.gene29396.t1 AT1G73410 42.453 106 58 3 15 119 6 109 1.31e-17 80.9
MS.gene29396.t1 AT3G09230 37.864 103 63 1 15 117 55 156 1.44e-17 82.8
MS.gene29396.t1 AT5G58850 37.143 105 65 1 15 119 105 208 1.67e-17 82.8
MS.gene29396.t1 AT5G61420 64.000 50 18 0 82 131 2 51 3.81e-17 80.1
MS.gene29396.t1 AT4G18770 30.233 129 87 2 9 137 211 336 4.41e-17 81.3
MS.gene29396.t1 AT5G11050 36.449 107 67 1 13 119 103 208 7.03e-17 80.9
MS.gene29396.t1 AT3G09370 37.383 107 66 1 10 116 138 243 7.72e-17 80.9
MS.gene29396.t1 AT5G14750 66.667 48 16 0 71 118 13 60 8.39e-17 76.3
MS.gene29396.t1 AT5G14750 66.667 48 16 0 71 118 13 60 8.39e-17 76.3
MS.gene29396.t1 AT3G09370 37.383 107 66 1 10 116 130 235 8.44e-17 80.9
MS.gene29396.t1 AT3G09370 37.383 107 66 1 10 116 125 230 9.10e-17 80.9
MS.gene29396.t1 AT1G66380 55.556 72 32 0 45 116 7 78 4.41e-16 73.2
MS.gene29396.t1 AT5G40360 32.407 108 72 1 8 115 151 257 4.77e-16 77.8
MS.gene29396.t1 AT5G11510 33.333 108 71 1 10 117 76 182 9.66e-16 78.2
MS.gene29396.t1 AT5G11510 33.333 108 71 1 10 117 76 182 1.10e-15 77.8
MS.gene29396.t1 AT5G11510 33.333 108 71 1 10 117 76 182 1.10e-15 77.8
MS.gene29396.t1 AT5G11510 33.333 108 71 1 10 117 76 182 1.10e-15 77.8
MS.gene29396.t1 AT5G11510 33.333 108 71 1 10 117 76 182 1.10e-15 77.8
MS.gene29396.t1 AT2G25230 33.858 127 81 2 1 125 12 137 1.18e-15 75.1
MS.gene29396.t1 AT4G33450 38.532 109 64 3 9 116 13 119 1.83e-15 75.1
MS.gene29396.t1 AT4G32730 33.333 108 71 1 10 117 82 188 8.28e-15 75.5
MS.gene29396.t1 AT4G32730 33.333 108 71 1 10 117 82 188 8.28e-15 75.5
MS.gene29396.t1 AT4G32730 33.333 108 71 1 10 117 82 188 8.28e-15 75.5
MS.gene29396.t1 AT4G32730 33.333 108 71 1 10 117 82 188 8.28e-15 75.5
MS.gene29396.t1 AT4G32730 33.333 108 71 1 10 117 82 188 8.83e-15 75.1
MS.gene29396.t1 AT5G15310 73.171 41 11 0 89 129 9 49 1.89e-14 72.0
MS.gene29396.t1 AT3G23250 61.702 47 18 0 71 117 13 59 4.45e-14 70.5
MS.gene29396.t1 AT4G28110 65.854 41 14 0 89 129 4 44 6.25e-14 69.7
MS.gene29396.t1 AT1G74430 61.905 42 16 0 88 129 18 59 7.33e-14 69.3
MS.gene29396.t1 AT4G00540 32.414 145 87 4 13 155 101 236 1.66e-13 70.9
MS.gene29396.t1 AT4G00540 32.414 145 87 4 13 155 99 234 2.03e-13 70.5
MS.gene29396.t1 AT5G14340 56.522 46 20 0 88 133 9 54 3.39e-13 67.4
MS.gene29396.t1 AT5G59780 58.696 46 19 0 71 116 1 46 1.21e-12 65.5
MS.gene29396.t1 AT3G46130 53.571 56 25 1 71 126 1 55 1.67e-12 65.5
MS.gene29396.t1 AT1G22640 62.500 40 15 0 89 128 16 55 7.94e-12 63.5
MS.gene29396.t1 AT5G39700 34.862 109 68 3 8 115 49 155 8.64e-12 63.5
MS.gene29396.t1 AT5G40430 31.858 113 75 2 9 121 48 158 4.86e-11 62.4

Find 42 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATAACTGTTTCCATTT+TGG 0.092201 3.3:+31725390 None:intergenic
TCTAAACTCATTGCTGATTA+TGG 0.130701 3.3:-31725505 MS.gene29396:CDS
TAATCCAACATCAATGTTTA+TGG 0.159625 3.3:-31725308 MS.gene29396:CDS
CTAAAATTTGTTGTTCTTGC+AGG 0.216669 3.3:+31725161 None:intergenic
TGTTGGATTATTATTATTAC+TGG 0.243760 3.3:+31725321 None:intergenic
GAGAAAGGCTTGTGAGTAAC+AGG 0.271065 3.3:+31725526 None:intergenic
TAACGATTAGATCTTCTTCT+TGG 0.278556 3.3:+31725677 None:intergenic
TCTAAGCTTTCCCGAACTTT+TGG 0.281516 3.3:-31725035 MS.gene29396:CDS
AAAGCAATTGCCACCCAAAA+TGG 0.287493 3.3:-31725404 MS.gene29396:CDS
AGAAAGTCATTCCAACTAAA+TGG 0.304797 3.3:+31725223 None:intergenic
ATCATAGCTCAACAACTTCC+TGG 0.362064 3.3:-31725622 MS.gene29396:CDS
ATTGCTGATTATGGAAATAT+AGG 0.383788 3.3:-31725496 MS.gene29396:CDS
ACAATGATGTTAAGAACAAT+TGG 0.395885 3.3:-31725591 MS.gene29396:CDS
GGATGGTTCCTCCAAAAGTT+CGG 0.407545 3.3:+31725024 None:intergenic
GTTAAGCTTCATGCAGCTAT+AGG 0.410524 3.3:-31725658 MS.gene29396:CDS
GTTTCTTGTGTTGAAGGTAA+TGG 0.419625 3.3:+31725259 None:intergenic
AACGATTAGATCTTCTTCTT+GGG 0.424842 3.3:+31725678 None:intergenic
TTAACAGGTGTTAAGAGGTA+TGG 0.429021 3.3:-31725766 MS.gene29396:intron
TGGGTGGCAATTGCTTTGAT+TGG 0.436587 3.3:+31725410 None:intergenic
GATGGTTCCTCCAAAAGTTC+GGG 0.438555 3.3:+31725025 None:intergenic
AAGTTTGTTTCTTGTGTTGA+AGG 0.448562 3.3:+31725253 None:intergenic
TGTTCTTGCAGGTTATTAGC+AGG 0.461869 3.3:+31725172 None:intergenic
GCTTCCATAAACATTGATGT+TGG 0.479934 3.3:+31725304 None:intergenic
GTGTCATCAAAAGAGGTGTA+TGG 0.486661 3.3:-31726790 MS.gene29396:CDS
CCTTCATTTGCCTCAGAGCA+TGG 0.493445 3.3:-31726743 MS.gene29396:CDS
GTGAACTTATCATCATGCTT+AGG 0.502782 3.3:+31725703 None:intergenic
ACATCATTGTCTGTTCTCCC+AGG 0.541477 3.3:+31725604 None:intergenic
TCAGCAATGAGTTTAGAGAA+AGG 0.549669 3.3:+31725511 None:intergenic
TGAACTGATTAGTAATGGGA+TGG 0.554302 3.3:+31725007 None:intergenic
CCATGCTCTGAGGCAAATGA+AGG 0.555271 3.3:+31726743 None:intergenic
TTCATGCAGCTATAGGTAGT+AGG 0.563306 3.3:-31725651 MS.gene29396:CDS
TCATAGCTCAACAACTTCCT+GGG 0.565623 3.3:-31725621 MS.gene29396:CDS
CTGAGGATGATGACGAGACT+TGG 0.583127 3.3:+31725104 None:intergenic
ATCATGCTTAGGATCAAGCA+TGG 0.606048 3.3:+31725714 None:intergenic
CTCAGACATTTCATTCGTAG+AGG 0.608725 3.3:-31725086 MS.gene29396:CDS
AAAAGAAGCTTTCTCAAATG+GGG 0.633115 3.3:-31725555 MS.gene29396:CDS
TATTGGCAGAAAACATGGTG+AGG 0.658433 3.3:-31726835 None:intergenic
CTCTACGAATGAAATGTCTG+AGG 0.666993 3.3:+31725087 None:intergenic
ATGCAGCTATAGGTAGTAGG+TGG 0.672400 3.3:-31725648 MS.gene29396:CDS
GCTGATTATGGAAATATAGG+TGG 0.681369 3.3:-31725493 MS.gene29396:CDS
ATTAAGAGATCCATGCTCTG+AGG 0.684883 3.3:+31726733 None:intergenic
AGAAAGGCTTGTGAGTAACA+GGG 0.701057 3.3:+31725527 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATATTTGTACTAAATT+TGG + chr3.3:31725348-31725367 None:intergenic 10.0%
!!! ATCGTTAATTTTTTTTTATT+AGG + chr3.3:31725616-31725635 None:intergenic 10.0%
!!! TCGTTAATTTTTTTTTATTA+GGG + chr3.3:31725615-31725634 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGAAGAT+GGG - chr3.3:31725732-31725751 MS.gene29396:CDS 10.0%
!! TAGTACAAATATAAATTGTT+GGG - chr3.3:31725352-31725371 MS.gene29396:CDS 15.0%
!! TTAGTACAAATATAAATTGT+TGG - chr3.3:31725351-31725370 MS.gene29396:CDS 15.0%
!! TTCAAAAAAAAAAAAAAGTC+AGG + chr3.3:31725729-31725748 None:intergenic 15.0%
!!! CGTTAATTTTTTTTTATTAG+GGG + chr3.3:31725614-31725633 None:intergenic 15.0%
!!! CTTTTTTTTTTTTTTGAAGA+TGG - chr3.3:31725731-31725750 MS.gene29396:CDS 15.0%
!! AAAAAGTAAATGAACAAGTT+AGG + chr3.3:31725763-31725782 None:intergenic 20.0%
!! AAAACAAAGAAATCATAAGA+TGG + chr3.3:31725221-31725240 None:intergenic 20.0%
!! CAAATAATAAGTGTTTGATT+TGG - chr3.3:31725791-31725810 MS.gene29396:intron 20.0%
!! TGTTGGATTATTATTATTAC+TGG + chr3.3:31726518-31726537 None:intergenic 20.0%
!!! AAATTGATTTTGATTGCATT+AGG - chr3.3:31725389-31725408 MS.gene29396:CDS 20.0%
!!! ATAAGTTTCATTGATTCTAA+AGG - chr3.3:31725288-31725307 MS.gene29396:CDS 20.0%
!!! GATAAGAATATGTTTTTAAC+AGG - chr3.3:31726055-31726074 MS.gene29396:intron 20.0%
! AAAAAGAAGCTTTCTCAAAT+GGG - chr3.3:31726280-31726299 MS.gene29396:intron 25.0%
! AAAAATAGTGTCATCAAAAG+AGG - chr3.3:31725039-31725058 MS.gene29396:CDS 25.0%
! ACAATGATGTTAAGAACAAT+TGG - chr3.3:31726245-31726264 MS.gene29396:intron 25.0%
! CAGTAAAGTTAATGAAAACA+TGG - chr3.3:31726023-31726042 MS.gene29396:intron 25.0%
! CGCATCAATGTTTATATTTA+TGG + chr3.3:31725530-31725549 None:intergenic 25.0%
! TAATCCAACATCAATGTTTA+TGG - chr3.3:31726528-31726547 MS.gene29396:intron 25.0%
!! ATTCATAACTGTTTCCATTT+TGG + chr3.3:31726449-31726468 None:intergenic 25.0%
!! ATTGCTGATTATGGAAATAT+AGG - chr3.3:31726340-31726359 MS.gene29396:intron 25.0%
!! TTCATAACTGTTTCCATTTT+GGG + chr3.3:31726448-31726467 None:intergenic 25.0%
!!! CATTTTCTACTTTTGTCATT+GGG + chr3.3:31726492-31726511 None:intergenic 25.0%
!!! GTCATTTTAATCAAGACTTT+AGG - chr3.3:31726374-31726393 MS.gene29396:intron 25.0%
!!! TCATTTTCTACTTTTGTCAT+TGG + chr3.3:31726493-31726512 None:intergenic 25.0%
!!! TTTTTTGTTGATAGATGTGT+GGG - chr3.3:31725698-31725717 MS.gene29396:CDS 25.0%
!!! TTTTTTTGTTGATAGATGTG+TGG - chr3.3:31725697-31725716 MS.gene29396:CDS 25.0%
!!! TTTTTTTTTGAAGATGGGTT+TGG - chr3.3:31725737-31725756 MS.gene29396:CDS 25.0%
AAAAGAAGCTTTCTCAAATG+GGG - chr3.3:31726281-31726300 MS.gene29396:intron 30.0%
AACGATTAGATCTTCTTCTT+GGG + chr3.3:31726161-31726180 None:intergenic 30.0%
AATGAACCAAAAACACTTCT+CGG + chr3.3:31725962-31725981 None:intergenic 30.0%
AGAAAGTCATTCCAACTAAA+TGG + chr3.3:31726616-31726635 None:intergenic 30.0%
CTAAATTTGGTTGTACAGAA+AGG + chr3.3:31725335-31725354 None:intergenic 30.0%
GAAAAAGAAGCTTTCTCAAA+TGG - chr3.3:31726279-31726298 MS.gene29396:intron 30.0%
TAACGATTAGATCTTCTTCT+TGG + chr3.3:31726162-31726181 None:intergenic 30.0%
! AAATTGTTGGGTTACTTTCA+AGG - chr3.3:31725364-31725383 MS.gene29396:CDS 30.0%
! AAGTTTGTTTCTTGTGTTGA+AGG + chr3.3:31726586-31726605 None:intergenic 30.0%
! ACTTCTGTCTCTAAAAAAAC+AGG - chr3.3:31725129-31725148 MS.gene29396:CDS 30.0%
! CAAGAACAACAAATTTTAGG+TGG - chr3.3:31726679-31726698 MS.gene29396:intron 30.0%
! CTGCAAGAACAACAAATTTT+AGG - chr3.3:31726676-31726695 MS.gene29396:intron 30.0%
! TCTAAACTCATTGCTGATTA+TGG - chr3.3:31726331-31726350 MS.gene29396:intron 30.0%
!! CTAAAATTTGTTGTTCTTGC+AGG + chr3.3:31726678-31726697 None:intergenic 30.0%
!! TGTTTTTAACAGGTGTTAAG+AGG - chr3.3:31726065-31726084 MS.gene29396:intron 30.0%
GCTGATTATGGAAATATAGG+TGG - chr3.3:31726343-31726362 MS.gene29396:intron 35.0%
GCTTCCATAAACATTGATGT+TGG + chr3.3:31726535-31726554 None:intergenic 35.0%
GTGAACTTATCATCATGCTT+AGG + chr3.3:31726136-31726155 None:intergenic 35.0%
GTTTCTTGTGTTGAAGGTAA+TGG + chr3.3:31726580-31726599 None:intergenic 35.0%
TAATTGAGTCCCCCATAAAT+TGG - chr3.3:31725873-31725892 MS.gene29396:intron 35.0%
TATGAGTATAGTTGTTGGGA+GGG + chr3.3:31725843-31725862 None:intergenic 35.0%
TCAGCAATGAGTTTAGAGAA+AGG + chr3.3:31726328-31726347 None:intergenic 35.0%
TTAACAGGTGTTAAGAGGTA+TGG - chr3.3:31726070-31726089 MS.gene29396:intron 35.0%
TTCCAATAAAATTGGAGGCT+CGG - chr3.3:31725575-31725594 MS.gene29396:CDS 35.0%
! ACTTTTCTGCACCATTTAGT+TGG - chr3.3:31726602-31726621 MS.gene29396:intron 35.0%
! AGCCTCCAATTTTATTGGAA+CGG + chr3.3:31725575-31725594 None:intergenic 35.0%
! ATAACTGTTTCCATTTTGGG+TGG + chr3.3:31726445-31726464 None:intergenic 35.0%
! CTCATTTTCTTGATCGAGTA+TGG + chr3.3:31726776-31726795 None:intergenic 35.0%
!! TTCTACTTTTGTCATTGGGA+TGG + chr3.3:31726488-31726507 None:intergenic 35.0%
AAAGCAATTGCCACCCAAAA+TGG - chr3.3:31726432-31726451 MS.gene29396:intron 40.0%
AGAAAGGCTTGTGAGTAACA+GGG + chr3.3:31726312-31726331 None:intergenic 40.0%
ATCATAGCTCAACAACTTCC+TGG - chr3.3:31726214-31726233 MS.gene29396:intron 40.0%
ATCATGCTTAGGATCAAGCA+TGG + chr3.3:31726125-31726144 None:intergenic 40.0%
ATGAGTATAGTTGTTGGGAG+GGG + chr3.3:31725842-31725861 None:intergenic 40.0%
ATGGAAAAAGTTGCAGGCTT+AGG - chr3.3:31726089-31726108 MS.gene29396:intron 40.0%
ATTAAGAGATCCATGCTCTG+AGG + chr3.3:31725106-31725125 None:intergenic 40.0%
CCAAAAACACTTCTCGGATT+AGG + chr3.3:31725956-31725975 None:intergenic 40.0%
CTCAGACATTTCATTCGTAG+AGG - chr3.3:31726750-31726769 MS.gene29396:CDS 40.0%
CTCTACGAATGAAATGTCTG+AGG + chr3.3:31726752-31726771 None:intergenic 40.0%
GGGGACTCAATTATTTGTAG+GGG + chr3.3:31725866-31725885 None:intergenic 40.0%
GGGGGACTCAATTATTTGTA+GGG + chr3.3:31725867-31725886 None:intergenic 40.0%
GGGGTATGAGTATAGTTGTT+GGG + chr3.3:31725847-31725866 None:intergenic 40.0%
GTATGAGTATAGTTGTTGGG+AGG + chr3.3:31725844-31725863 None:intergenic 40.0%
GTTAAGCTTCATGCAGCTAT+AGG - chr3.3:31726178-31726197 MS.gene29396:intron 40.0%
TCATAGCTCAACAACTTCCT+GGG - chr3.3:31726215-31726234 MS.gene29396:intron 40.0%
TGGGGGACTCAATTATTTGT+AGG + chr3.3:31725868-31725887 None:intergenic 40.0%
TGTTCTTGCAGGTTATTAGC+AGG + chr3.3:31726667-31726686 None:intergenic 40.0%
TTCATGCAGCTATAGGTAGT+AGG - chr3.3:31726185-31726204 MS.gene29396:intron 40.0%
! AGAGGTATGGAAAAAGTTGC+AGG - chr3.3:31726083-31726102 MS.gene29396:intron 40.0%
! AGGGGTATGAGTATAGTTGT+TGG + chr3.3:31725848-31725867 None:intergenic 40.0%
! CTTTTGTCATTGGGATGGTT+TGG + chr3.3:31726483-31726502 None:intergenic 40.0%
! GTGTCATCAAAAGAGGTGTA+TGG - chr3.3:31725046-31725065 MS.gene29396:CDS 40.0%
! TCTAAGCTTTCCCGAACTTT+TGG - chr3.3:31726801-31726820 MS.gene29396:CDS 40.0%
!!! CCTAATCCGAGAAGTGTTTT+TGG - chr3.3:31725953-31725972 MS.gene29396:intron 40.0%
ACATCATTGTCTGTTCTCCC+AGG + chr3.3:31726235-31726254 None:intergenic 45.0%
ATGCAGCTATAGGTAGTAGG+TGG - chr3.3:31726188-31726207 MS.gene29396:intron 45.0%
CACCAGACACAATATAGACG+TGG - chr3.3:31725484-31725503 MS.gene29396:CDS 45.0%
CAGGGCCGTTCCAATAAAAT+TGG - chr3.3:31725567-31725586 MS.gene29396:CDS 45.0%
GAAAAAGTTGCAGGCTTAGG+TGG - chr3.3:31726092-31726111 MS.gene29396:intron 45.0%
GAGAAAGGCTTGTGAGTAAC+AGG + chr3.3:31726313-31726332 None:intergenic 45.0%
GATGGTTCCTCCAAAAGTTC+GGG + chr3.3:31726814-31726833 None:intergenic 45.0%
GGATGGTTCCTCCAAAAGTT+CGG + chr3.3:31726815-31726834 None:intergenic 45.0%
GGCCGTTCCAATAAAATTGG+AGG - chr3.3:31725570-31725589 MS.gene29396:CDS 45.0%
GTCCACGTCTATATTGTGTC+TGG + chr3.3:31725489-31725508 None:intergenic 45.0%
TGGGTGGCAATTGCTTTGAT+TGG + chr3.3:31726429-31726448 None:intergenic 45.0%
TTGAGTCCCCCATAAATTGG+AGG - chr3.3:31725876-31725895 MS.gene29396:intron 45.0%
! AAGCTTTCCCGAACTTTTGG+AGG - chr3.3:31726804-31726823 MS.gene29396:CDS 45.0%
! AGCCGAGCCTCCAATTTTAT+TGG + chr3.3:31725580-31725599 None:intergenic 45.0%
ACGGCCCTGTATCTCAATGT+CGG + chr3.3:31725556-31725575 None:intergenic 50.0%
CCTTCATTTGCCTCAGAGCA+TGG - chr3.3:31725093-31725112 MS.gene29396:CDS 50.0%
CTCTCAACAGCGCTGTTCTT+AGG + chr3.3:31725930-31725949 None:intergenic 50.0%
GTGCCCGACATTGAGATACA+GGG - chr3.3:31725549-31725568 MS.gene29396:CDS 50.0%
! CTGAGGATGATGACGAGACT+TGG + chr3.3:31726735-31726754 None:intergenic 50.0%
!! CCATGCTCTGAGGCAAATGA+AGG + chr3.3:31725096-31725115 None:intergenic 50.0%
AGCCGGGCCTCCAATTTATG+GGG + chr3.3:31725886-31725905 None:intergenic 55.0%
CGGCCCTGTATCTCAATGTC+GGG + chr3.3:31725555-31725574 None:intergenic 55.0%
CGTGCCCGACATTGAGATAC+AGG - chr3.3:31725548-31725567 MS.gene29396:CDS 55.0%
GAGCCGGGCCTCCAATTTAT+GGG + chr3.3:31725887-31725906 None:intergenic 55.0%
GGCAAGCGCAAAGAGCTTTG+CGG + chr3.3:31725909-31725928 None:intergenic 55.0%
TCCCCCATAAATTGGAGGCC+CGG - chr3.3:31725881-31725900 MS.gene29396:intron 55.0%
CGCAAAGAGCTTTGCGGAGC+CGG + chr3.3:31725903-31725922 None:intergenic 60.0%
GCAAAGAGCTTTGCGGAGCC+GGG + chr3.3:31725902-31725921 None:intergenic 60.0%
GCCGGGCCTCCAATTTATGG+GGG + chr3.3:31725885-31725904 None:intergenic 60.0%
GGAGCCGGGCCTCCAATTTA+TGG + chr3.3:31725888-31725907 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 31725015 31726843 31725015 ID=MS.gene29396
chr3.3 mRNA 31725015 31726843 31725015 ID=MS.gene29396.t1;Parent=MS.gene29396
chr3.3 exon 31726708 31726843 31726708 ID=MS.gene29396.t1.exon1;Parent=MS.gene29396.t1
chr3.3 CDS 31726708 31726843 31726708 ID=cds.MS.gene29396.t1;Parent=MS.gene29396.t1
chr3.3 exon 31725015 31725781 31725015 ID=MS.gene29396.t1.exon2;Parent=MS.gene29396.t1
chr3.3 CDS 31725015 31725781 31725015 ID=cds.MS.gene29396.t1;Parent=MS.gene29396.t1
Gene Sequence

>MS.gene29396

ATGGTGAGGTCTTCAAGTTGTGAAAAAAATAGTGTCATCAAAAGAGGTGTATGGATTGCAGAAGAAGATGCAAAGACACCTTCATTTGCCTCAGAGCATGGATCTCTTAATTTGACTTCTGTCTCTAAAAAAACAGGTTAGAGACTTGTTTCTTTTTCAATAAAATATTTACTATATGTTAAAATGAGAAATTGTTATGTTTTCCATCTTATGATTTCTTTGTTTTTCTCATTTCTCATATTCTTTTTTCTTAGTAATTTTTATCTCACACAGATAAGTTTCATTGATTCTAAAGGAGAGAATGTCAGTTGATTTTACCTTTCTGTACAACCAAATTTAGTACAAATATAAATTGTTGGGTTACTTTCAAGGCAAAATTGATTTTGATTGCATTAGGTTGAAAAGTTTACATTAAGACTTTTGCTTCGATTTTAACATAATCAACTATGAAGCACGTACTCTACACAGACACCAGACACAATATAGACGTGGACACGTTGACATTGCTAATGCCATAAATATAAACATTGATGCGTGCCCGACATTGAGATACAGGGCCGTTCCAATAAAATTGGAGGCTCGGCTATTAAAAATGTCCCCTAATAAAAAAAAATTAACGATAATTTAAACAATCACAAAGTAACAATAAACATTATTTTGATTTTAATTTGTTTTGTTGAAATTTTTTTGTTGATAGATGTGTGGGTTTGACCTGACTTTTTTTTTTTTTTGAAGATGGGTTTGGCCTAACTTGTTCATTTACTTTTTATTTTTGTCAAATAATAAGTGTTTGATTTGGACTTACATAACAAAAGAAAATATTACCCCTCCCAACAACTATACTCATACCCCTACAAATAATTGAGTCCCCCATAAATTGGAGGCCCGGCTCCGCAAAGCTCTTTGCGCTTGCCTAAGAACAGCGCTGTTGAGAGACGCCTAATCCGAGAAGTGTTTTTGGTTCATTAATAATCAATTTTACAAAATTTAAGTTTATTCAAAATCACACAGTAAAGTTAATGAAAACATGGATTGAATTTGATAAGAATATGTTTTTAACAGGTGTTAAGAGGTATGGAAAAAGTTGCAGGCTTAGGTGGAGTAACTCCATGCTTGATCCTAAGCATGATGATAAGTTCACATCCCAAGAAGAAGATCTAATCGTTAAGCTTCATGCAGCTATAGGTAGTAGGTGGTCTATCATAGCTCAACAACTTCCTGGGAGAACAGACAATGATGTTAAGAACAATTGGAACACAAAGCTGAAAAAGAAGCTTTCTCAAATGGGGATAGACCCTGTTACTCACAAGCCTTTCTCTAAACTCATTGCTGATTATGGAAATATAGGTGGTGCTAATTGTCATTTTAATCAAGACTTTAGGAATCAAAGATTGATCAGAAACACAAATGACCAATCAAAGCAATTGCCACCCAAAATGGAAACAGTTATGAATCTTTCACAGTTCCAAACCATCCCAATGACAAAAGTAGAAAATGAAACCAGTAATAATAATAATCCAACATCAATGTTTATGGAAGCATTCTTGTCATCATCATCATCACCATTACCTTCAACACAAGAAACAAACTTTTCTGCACCATTTAGTTGGAATGACTTTCTTCTACAAGATGCTTTTTCACAAGATGCACCTGCTAATAACCTGCAAGAACAACAAATTTTAGGTGGATTGTTTTCAAAGAAAGATGTCATGTCACACCAAGTCTCGTCATCATCCTCAGACATTTCATTCGTAGAGGCCATACTCGATCAAGAAAATGAGATGTTTCTAAGCTTTCCCGAACTTTTGGAGGAACCATCCCATTACTAA
Protein sequence

>MS.gene29396.t1

MVRSSSCEKNSVIKRGVWIAEEDAKTPSFASEHGSLNLTSVSKKTGVKRYGKSCRLRWSNSMLDPKHDDKFTSQEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGANCHFNQDFRNQRLIRNTNDQSKQLPPKMETVMNLSQFQTIPMTKVENETSNNNNPTSMFMEAFLSSSSSPLPSTQETNFSAPFSWNDFLLQDAFSQDAPANNLQEQQILGGLFSKKDVMSHQVSSSSSDISFVEAILDQENEMFLSFPELLEEPSHY