Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29464.t1 | XP_003616375.2 | 93.3 | 282 | 18 | 1 | 1 | 281 | 30 | 311 | 1.30E-123 | 452.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29464.t1 | Q9FJ00 | 40.6 | 283 | 155 | 6 | 3 | 281 | 21 | 294 | 1.4e-33 | 144.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29464.t1 | G7K1Y5 | 93.3 | 282 | 18 | 1 | 1 | 281 | 30 | 311 | 9.6e-124 | 452.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29464.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29464.t1 | MTR_5g079500 | 96.099 | 282 | 10 | 1 | 1 | 281 | 30 | 311 | 0.0 | 559 |
| MS.gene29464.t1 | MTR_2g021380 | 94.203 | 69 | 4 | 0 | 1 | 69 | 13 | 81 | 5.42e-40 | 135 |
| MS.gene29464.t1 | MTR_3g073460 | 88.732 | 71 | 5 | 2 | 1 | 69 | 13 | 82 | 1.54e-30 | 110 |
| MS.gene29464.t1 | MTR_5g005110 | 46.957 | 115 | 47 | 2 | 142 | 256 | 192 | 292 | 2.12e-25 | 103 |
| MS.gene29464.t1 | MTR_1g106470 | 50.000 | 94 | 41 | 2 | 167 | 256 | 173 | 264 | 1.47e-24 | 100 |
| MS.gene29464.t1 | MTR_1g106460 | 46.667 | 120 | 51 | 3 | 137 | 256 | 200 | 306 | 7.25e-24 | 99.0 |
| MS.gene29464.t1 | MTR_3g103030 | 58.571 | 70 | 29 | 0 | 187 | 256 | 228 | 297 | 1.09e-22 | 95.9 |
| MS.gene29464.t1 | MTR_1g018090 | 62.903 | 62 | 23 | 0 | 195 | 256 | 281 | 342 | 1.65e-22 | 95.9 |
| MS.gene29464.t1 | MTR_8g093500 | 50.000 | 80 | 33 | 1 | 171 | 250 | 104 | 176 | 3.62e-19 | 85.1 |
| MS.gene29464.t1 | MTR_3g101810 | 62.500 | 56 | 21 | 0 | 195 | 250 | 178 | 233 | 1.98e-18 | 83.2 |
| MS.gene29464.t1 | MTR_1g106480 | 60.345 | 58 | 23 | 0 | 201 | 258 | 82 | 139 | 4.88e-18 | 79.3 |
| MS.gene29464.t1 | MTR_7g069590 | 66.038 | 53 | 18 | 0 | 195 | 247 | 33 | 85 | 8.15e-18 | 79.0 |
| MS.gene29464.t1 | MTR_4g131160 | 42.453 | 106 | 57 | 1 | 150 | 251 | 154 | 259 | 1.47e-17 | 82.0 |
| MS.gene29464.t1 | MTR_4g131160 | 42.453 | 106 | 57 | 1 | 150 | 251 | 157 | 262 | 1.52e-17 | 82.0 |
| MS.gene29464.t1 | MTR_1g080890 | 50.769 | 65 | 32 | 0 | 187 | 251 | 192 | 256 | 1.80e-14 | 72.8 |
| MS.gene29464.t1 | MTR_5g017210 | 55.696 | 79 | 33 | 1 | 172 | 250 | 123 | 199 | 4.67e-11 | 62.0 |
| MS.gene29464.t1 | MTR_2g067000 | 43.421 | 76 | 43 | 0 | 175 | 250 | 144 | 219 | 7.73e-11 | 62.0 |
| MS.gene29464.t1 | MTR_1g084980 | 49.020 | 51 | 26 | 0 | 201 | 251 | 475 | 525 | 8.28e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29464.t1 | AT5G37800 | 53.968 | 189 | 65 | 5 | 100 | 281 | 121 | 294 | 9.37e-55 | 179 |
| MS.gene29464.t1 | AT1G66470 | 62.585 | 147 | 48 | 2 | 133 | 279 | 147 | 286 | 2.15e-51 | 171 |
| MS.gene29464.t1 | AT2G14760 | 60.000 | 70 | 28 | 0 | 187 | 256 | 236 | 305 | 3.18e-24 | 100 |
| MS.gene29464.t1 | AT4G33880 | 60.000 | 70 | 28 | 0 | 187 | 256 | 265 | 334 | 5.25e-24 | 99.8 |
| MS.gene29464.t1 | AT1G27740 | 54.430 | 79 | 36 | 0 | 178 | 256 | 157 | 235 | 1.12e-23 | 97.1 |
| MS.gene29464.t1 | AT5G43175 | 58.442 | 77 | 30 | 1 | 182 | 256 | 124 | 200 | 1.43e-23 | 96.3 |
| MS.gene29464.t1 | AT2G14760 | 50.602 | 83 | 28 | 1 | 187 | 256 | 236 | 318 | 9.15e-21 | 90.9 |
| MS.gene29464.t1 | AT5G01305 | 57.576 | 66 | 28 | 0 | 182 | 247 | 31 | 96 | 3.37e-20 | 85.9 |
| MS.gene29464.t1 | AT2G24260 | 50.000 | 86 | 39 | 1 | 187 | 272 | 34 | 115 | 1.14e-19 | 86.3 |
| MS.gene29464.t1 | AT2G24260 | 50.000 | 86 | 39 | 1 | 187 | 272 | 137 | 218 | 7.47e-19 | 85.5 |
| MS.gene29464.t1 | AT4G30980 | 49.412 | 85 | 39 | 1 | 187 | 271 | 129 | 209 | 2.17e-18 | 83.6 |
| MS.gene29464.t1 | AT4G30980 | 53.247 | 77 | 32 | 1 | 195 | 271 | 185 | 257 | 3.06e-18 | 84.0 |
| MS.gene29464.t1 | AT5G58010 | 50.000 | 72 | 36 | 0 | 180 | 251 | 91 | 162 | 7.46e-17 | 79.3 |
| MS.gene29464.t1 | AT4G00120 | 43.820 | 89 | 48 | 2 | 162 | 250 | 88 | 174 | 7.58e-17 | 77.4 |
| MS.gene29464.t1 | AT3G21330 | 58.929 | 56 | 23 | 0 | 195 | 250 | 276 | 331 | 5.58e-16 | 77.4 |
| MS.gene29464.t1 | AT3G50330 | 64.179 | 67 | 22 | 1 | 195 | 261 | 126 | 190 | 1.27e-11 | 63.5 |
| MS.gene29464.t1 | AT5G09750 | 51.250 | 80 | 32 | 1 | 171 | 250 | 109 | 181 | 4.35e-11 | 62.0 |
| MS.gene29464.t1 | AT1G09530 | 49.020 | 51 | 26 | 0 | 201 | 251 | 350 | 400 | 7.48e-11 | 62.8 |
| MS.gene29464.t1 | AT1G09530 | 49.020 | 51 | 26 | 0 | 201 | 251 | 350 | 400 | 7.48e-11 | 62.8 |
| MS.gene29464.t1 | AT1G09530 | 49.020 | 51 | 26 | 0 | 201 | 251 | 350 | 400 | 7.48e-11 | 62.8 |
| MS.gene29464.t1 | AT1G09530 | 49.020 | 51 | 26 | 0 | 201 | 251 | 350 | 400 | 7.48e-11 | 62.8 |
| MS.gene29464.t1 | AT1G09530 | 49.020 | 51 | 26 | 0 | 201 | 251 | 350 | 400 | 7.48e-11 | 62.8 |
| MS.gene29464.t1 | AT1G09530 | 49.020 | 51 | 26 | 0 | 201 | 251 | 350 | 400 | 7.48e-11 | 62.8 |
Find 43 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGCAGCGGATGAATTT+TGG | 0.235303 | 5.3:+64351817 | MS.gene29464:CDS |
| CATGGCTTCTTTGCATTGGC+AGG | 0.350562 | 5.3:-64351216 | None:intergenic |
| CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5.3:+64350887 | MS.gene29464:CDS |
| AATGCAAAAGAGAAGCAAAA+TGG | 0.391258 | 5.3:+64350762 | MS.gene29464:CDS |
| GATGGTTCACAAAGCACTAA+TGG | 0.392160 | 5.3:+64350420 | MS.gene29464:CDS |
| CGTTTGGCACAAGTTCTTGT+AGG | 0.393441 | 5.3:-64351437 | None:intergenic |
| TCATCATCACAAGGGACATT+TGG | 0.398490 | 5.3:-64350816 | None:intergenic |
| TTGTTGCAAATTATTCTCAT+TGG | 0.405551 | 5.3:-64350640 | None:intergenic |
| TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5.3:-64351234 | None:intergenic |
| ACCATCTTCATCTTCAATCA+TGG | 0.419978 | 5.3:-64350403 | None:intergenic |
| AAATCTACCTTGGAACCGTT+TGG | 0.425715 | 5.3:-64351453 | None:intergenic |
| ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5.3:-64351288 | None:intergenic |
| TCTCCTACTCTATGCAGAAA+AGG | 0.440008 | 5.3:+64350483 | MS.gene29464:CDS |
| TGTGCATGGCTTCTTTGCAT+TGG | 0.456555 | 5.3:-64351220 | None:intergenic |
| AGCAACACTTTGAGGATCCT+TGG | 0.463727 | 5.3:-64351280 | None:intergenic |
| CTCCTACTCTATGCAGAAAA+GGG | 0.464840 | 5.3:+64350484 | MS.gene29464:CDS |
| TCCTCAAAGTGTTGCTGCCA+AGG | 0.467735 | 5.3:+64351287 | MS.gene29464:CDS |
| GAAACTTCAAGTGGTAGCTA+TGG | 0.482106 | 5.3:+64350726 | MS.gene29464:CDS |
| ATGAGAATAATTTGCAACAA+TGG | 0.519375 | 5.3:+64350643 | MS.gene29464:CDS |
| GAGTCTTTGATTAATTTCAA+AGG | 0.522051 | 5.3:+64350543 | MS.gene29464:CDS |
| GGTTGATTTGGTTACCATGT+TGG | 0.524353 | 5.3:+64351589 | MS.gene29464:intron |
| ACACTTTGAGGATCCTTGGA+TGG | 0.541193 | 5.3:-64351276 | None:intergenic |
| CTACAAGAACTTGTGCCAAA+CGG | 0.551928 | 5.3:+64351438 | MS.gene29464:CDS |
| GTTTCTTCAGTTGCAAGTGA+AGG | 0.554782 | 5.3:+64351634 | MS.gene29464:CDS |
| TGATGATAGCTTAATAAAAG+AGG | 0.558766 | 5.3:+64350845 | MS.gene29464:CDS |
| GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5.3:+64351849 | MS.gene29464:CDS |
| AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5.3:-64350883 | None:intergenic |
| ACTTGTGCCAAACGGTTCCA+AGG | 0.588357 | 5.3:+64351446 | MS.gene29464:CDS |
| ACAAACTTGTGCATGGTGCA+AGG | 0.588546 | 5.3:+64350690 | MS.gene29464:CDS |
| CAAAATGGTGAAAGTTCATG+TGG | 0.590862 | 5.3:+64350777 | MS.gene29464:CDS |
| ACTAATTGCTTTCTCCAACA+TGG | 0.596287 | 5.3:-64351603 | None:intergenic |
| AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5.3:+64350717 | MS.gene29464:CDS |
| TAGAGTAGGAGAATTTGTAA+TGG | 0.598886 | 5.3:-64350472 | None:intergenic |
| ACATAAGTCAAATCCATCCA+AGG | 0.604373 | 5.3:+64351263 | MS.gene29464:CDS |
| ATGGTGAAAGTTCATGTGGA+TGG | 0.618317 | 5.3:+64350781 | MS.gene29464:CDS |
| AAGTAACACAAACTTGTGCA+TGG | 0.624267 | 5.3:+64350683 | MS.gene29464:CDS |
| GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5.3:+64351406 | MS.gene29464:CDS |
| TCCATGATTGAAGATGAAGA+TGG | 0.626690 | 5.3:+64350402 | None:intergenic |
| CATGGTGTAGGTGTTGGCAG+CGG | 0.629054 | 5.3:+64351806 | MS.gene29464:intron |
| TCATCGTCGTCATCATCACA+AGG | 0.632243 | 5.3:-64350825 | None:intergenic |
| TATTACAACAATCTCATGCA+AGG | 0.632712 | 5.3:+64350576 | MS.gene29464:CDS |
| TGATAGCTTAATAAAAGAGG+CGG | 0.653073 | 5.3:+64350848 | MS.gene29464:CDS |
| CATCGTCGTCATCATCACAA+GGG | 0.736454 | 5.3:-64350824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTAATAAAATTAA+CGG | - | chr5.3:64351092-64351111 | None:intergenic | 0.0% |
| !! | GATAAATTAAAAATTGTTTA+GGG | + | chr5.3:64351726-64351745 | MS.gene29464:intron | 10.0% |
| !! | TGATAAATTAAAAATTGTTT+AGG | + | chr5.3:64351725-64351744 | MS.gene29464:intron | 10.0% |
| !! | CAAATTATTAGAACATATTT+AGG | + | chr5.3:64351112-64351131 | MS.gene29464:intron | 15.0% |
| !!! | ACTAGTTATTATATTTTTCT+TGG | + | chr5.3:64351749-64351768 | MS.gene29464:intron | 15.0% |
| !! | AATCAAAACATGATATAACT+TGG | - | chr5.3:64351325-64351344 | None:intergenic | 20.0% |
| !! | ATCAAAACATGATATAACTT+GGG | - | chr5.3:64351324-64351343 | None:intergenic | 20.0% |
| !! | GTAAAAATTTACAAAGACTT+TGG | - | chr5.3:64351530-64351549 | None:intergenic | 20.0% |
| !!! | TTTTGTGATATATTTGTTCA+TGG | + | chr5.3:64351788-64351807 | MS.gene29464:intron | 20.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | chr5.3:64351466-64351485 | None:intergenic | 25.0% |
| ! | AGCAAAATCTATTACCATTT+AGG | + | chr5.3:64350931-64350950 | MS.gene29464:intron | 25.0% |
| ! | ATGAGAGAAAATGAAAGTTT+AGG | + | chr5.3:64351694-64351713 | MS.gene29464:intron | 25.0% |
| ! | GAGTACTTAATGAAATAGAA+TGG | + | chr5.3:64351146-64351165 | MS.gene29464:intron | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5.3:64350543-64350562 | MS.gene29464:CDS | 25.0% |
| ! | TAGAATGGAAAATTGAGATA+AGG | + | chr5.3:64351161-64351180 | MS.gene29464:intron | 25.0% |
| ! | TGAGAGAAAATGAAAGTTTA+GGG | + | chr5.3:64351695-64351714 | MS.gene29464:intron | 25.0% |
| ! | TGATGATAGCTTAATAAAAG+AGG | + | chr5.3:64350845-64350864 | MS.gene29464:CDS | 25.0% |
| ! | TTGTTGCAAATTATTCTCAT+TGG | - | chr5.3:64350643-64350662 | None:intergenic | 25.0% |
| !! | AAGGTTTGTTTGTGTTTATA+GGG | + | chr5.3:64351180-64351199 | MS.gene29464:intron | 25.0% |
| !! | ATGAGAATAATTTGCAACAA+TGG | + | chr5.3:64350643-64350662 | MS.gene29464:CDS | 25.0% |
| !! | CTCTTTTGCATTATTGAATA+TGG | - | chr5.3:64350754-64350773 | None:intergenic | 25.0% |
| !! | TAAGGTTTGTTTGTGTTTAT+AGG | + | chr5.3:64351179-64351198 | MS.gene29464:intron | 25.0% |
| AAGAAAGCAACATAACTTTG+AGG | - | chr5.3:64351489-64351508 | None:intergenic | 30.0% | |
| AATGCAAAAGAGAAGCAAAA+TGG | + | chr5.3:64350762-64350781 | MS.gene29464:CDS | 30.0% | |
| AATTTACAAAGACTTTGGCT+TGG | - | chr5.3:64351525-64351544 | None:intergenic | 30.0% | |
| ATGACTCTAAACATCCTAAA+TGG | - | chr5.3:64350948-64350967 | None:intergenic | 30.0% | |
| GATATATTTGTTCATGGTGT+AGG | + | chr5.3:64351794-64351813 | MS.gene29464:intron | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5.3:64350475-64350494 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5.3:64350576-64350595 | MS.gene29464:CDS | 30.0% | |
| TGATAGCTTAATAAAAGAGG+CGG | + | chr5.3:64350848-64350867 | MS.gene29464:CDS | 30.0% | |
| ! | AGGTTTGTTTGTGTTTATAG+GGG | + | chr5.3:64351181-64351200 | MS.gene29464:intron | 30.0% |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5.3:64350717-64350736 | MS.gene29464:CDS | 30.0% |
| !! | ATTCTGATGATGAATTTTGC+AGG | + | chr5.3:64351568-64351587 | MS.gene29464:intron | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5.3:64351577-64351596 | MS.gene29464:intron | 30.0% |
| !!! | CACAAGTTTGTGTTACTTTT+AGG | - | chr5.3:64350681-64350700 | None:intergenic | 30.0% |
| AAGTAACACAAACTTGTGCA+TGG | + | chr5.3:64350683-64350702 | MS.gene29464:CDS | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | + | chr5.3:64351263-64351282 | MS.gene29464:CDS | 35.0% | |
| ACTAATTGCTTTCTCCAACA+TGG | - | chr5.3:64351606-64351625 | None:intergenic | 35.0% | |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5.3:64350777-64350796 | MS.gene29464:CDS | 35.0% | |
| CAGTTATGTGCAATATATCG+AGG | - | chr5.3:64351006-64351025 | None:intergenic | 35.0% | |
| GTTTGTTTGTGTTTATAGGG+GGG | + | chr5.3:64351183-64351202 | MS.gene29464:intron | 35.0% | |
| ! | GGTTTGTTTGTGTTTATAGG+GGG | + | chr5.3:64351182-64351201 | MS.gene29464:intron | 35.0% |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5.3:64351864-64351883 | None:intergenic | 35.0% |
| AAATCTACCTTGGAACCGTT+TGG | - | chr5.3:64351456-64351475 | None:intergenic | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5.3:64350886-64350905 | None:intergenic | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5.3:64350781-64350800 | MS.gene29464:CDS | 40.0% | |
| CTACAAGAACTTGTGCCAAA+CGG | + | chr5.3:64351438-64351457 | MS.gene29464:CDS | 40.0% | |
| CTCCTACTCTATGCAGAAAA+GGG | + | chr5.3:64350484-64350503 | MS.gene29464:CDS | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5.3:64350887-64350906 | MS.gene29464:CDS | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5.3:64350726-64350745 | MS.gene29464:CDS | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5.3:64351406-64351425 | MS.gene29464:CDS | 40.0% | |
| GCACATAACTGCAGTCAAAT+GGG | + | chr5.3:64351015-64351034 | MS.gene29464:intron | 40.0% | |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5.3:64351634-64351653 | MS.gene29464:CDS | 40.0% | |
| TCATCATCACAAGGGACATT+TGG | - | chr5.3:64350819-64350838 | None:intergenic | 40.0% | |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5.3:64350483-64350502 | MS.gene29464:CDS | 40.0% | |
| TGCACATAACTGCAGTCAAA+TGG | + | chr5.3:64351014-64351033 | MS.gene29464:intron | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5.3:64351800-64351819 | MS.gene29464:intron | 40.0% | |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5.3:64350420-64350439 | MS.gene29464:CDS | 40.0% |
| ! | TAGTTTTCAGCAGAGTTGGA+TGG | + | chr5.3:64350614-64350633 | MS.gene29464:CDS | 40.0% |
| !! | GATGAATTTTGGCCAGTCAA+TGG | + | chr5.3:64351828-64351847 | MS.gene29464:CDS | 40.0% |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5.3:64351589-64351608 | MS.gene29464:intron | 40.0% |
| !! | TGCTTAGTTTTCAGCAGAGT+TGG | + | chr5.3:64350610-64350629 | MS.gene29464:CDS | 40.0% |
| AACTGCAGTCAAATGGGTCA+CGG | + | chr5.3:64351021-64351040 | MS.gene29464:intron | 45.0% | |
| ACAAACTTGTGCATGGTGCA+AGG | + | chr5.3:64350690-64350709 | MS.gene29464:CDS | 45.0% | |
| CATCGTCGTCATCATCACAA+GGG | - | chr5.3:64350827-64350846 | None:intergenic | 45.0% | |
| CGTTTGGCACAAGTTCTTGT+AGG | - | chr5.3:64351440-64351459 | None:intergenic | 45.0% | |
| TCATCGTCGTCATCATCACA+AGG | - | chr5.3:64350828-64350847 | None:intergenic | 45.0% | |
| TGTGCATGGCTTCTTTGCAT+TGG | - | chr5.3:64351223-64351242 | None:intergenic | 45.0% | |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5.3:64351237-64351256 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5.3:64351279-64351298 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | chr5.3:64351283-64351302 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | - | chr5.3:64351307-64351326 | None:intergenic | 45.0% |
| ! | TGATGTTTCTGTCCTGATCG+CGG | + | chr5.3:64351059-64351078 | MS.gene29464:intron | 45.0% |
| ! | TGCCCTTTTCTGCATAGAGT+AGG | - | chr5.3:64350489-64350508 | None:intergenic | 45.0% |
| ! | TGTTGGCAGCGGATGAATTT+TGG | + | chr5.3:64351817-64351836 | MS.gene29464:CDS | 45.0% |
| !! | GAATTTTGGCCAGTCAATGG+TGG | + | chr5.3:64351831-64351850 | MS.gene29464:CDS | 45.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5.3:64351291-64351310 | None:intergenic | 50.0% | |
| ACTTGTGCCAAACGGTTCCA+AGG | + | chr5.3:64351446-64351465 | MS.gene29464:CDS | 50.0% | |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5.3:64351849-64351868 | MS.gene29464:CDS | 50.0% | |
| ! | CATGGCTTCTTTGCATTGGC+AGG | - | chr5.3:64351219-64351238 | None:intergenic | 50.0% |
| ! | GGAGCTTTTCCACCATTGAC+TGG | - | chr5.3:64351843-64351862 | None:intergenic | 50.0% |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5.3:64351287-64351306 | MS.gene29464:CDS | 50.0% |
| !! | CATGGTGTAGGTGTTGGCAG+CGG | + | chr5.3:64351806-64351825 | MS.gene29464:intron | 55.0% |
| AACGGTCTGCAACCGCGATC+AGG | - | chr5.3:64351074-64351093 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 64350405 | 64351917 | 64350405 | ID=MS.gene29464 |
| chr5.3 | mRNA | 64350405 | 64351917 | 64350405 | ID=MS.gene29464.t1;Parent=MS.gene29464 |
| chr5.3 | exon | 64350405 | 64350908 | 64350405 | ID=MS.gene29464.t1.exon1;Parent=MS.gene29464.t1 |
| chr5.3 | CDS | 64350405 | 64350908 | 64350405 | ID=cds.MS.gene29464.t1;Parent=MS.gene29464.t1 |
| chr5.3 | exon | 64351201 | 64351308 | 64351201 | ID=MS.gene29464.t1.exon2;Parent=MS.gene29464.t1 |
| chr5.3 | CDS | 64351201 | 64351308 | 64351201 | ID=cds.MS.gene29464.t1;Parent=MS.gene29464.t1 |
| chr5.3 | exon | 64351402 | 64351467 | 64351402 | ID=MS.gene29464.t1.exon3;Parent=MS.gene29464.t1 |
| chr5.3 | CDS | 64351402 | 64351467 | 64351402 | ID=cds.MS.gene29464.t1;Parent=MS.gene29464.t1 |
| chr5.3 | exon | 64351590 | 64351655 | 64351590 | ID=MS.gene29464.t1.exon4;Parent=MS.gene29464.t1 |
| chr5.3 | CDS | 64351590 | 64351655 | 64351590 | ID=cds.MS.gene29464.t1;Parent=MS.gene29464.t1 |
| chr5.3 | exon | 64351816 | 64351917 | 64351816 | ID=MS.gene29464.t1.exon5;Parent=MS.gene29464.t1 |
| chr5.3 | CDS | 64351816 | 64351917 | 64351816 | ID=cds.MS.gene29464.t1;Parent=MS.gene29464.t1 |
| Gene Sequence |
| Protein sequence |
