AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29511

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29511.t1 MTR_5g080470 96.354 192 6 1 1 191 1 192 2.64e-138 384
MS.gene29511.t1 MTR_7g096610 62.500 120 45 0 1 120 2 121 2.42e-52 167
MS.gene29511.t1 MTR_1g070205 69.608 102 31 0 8 109 13 114 1.68e-49 160
MS.gene29511.t1 MTR_7g096530 64.000 100 36 0 2 101 9 108 2.00e-45 149
MS.gene29511.t1 MTR_6g027710 53.782 119 55 0 6 124 39 157 1.84e-44 147
MS.gene29511.t1 MTR_8g036105 59.434 106 43 0 5 110 16 121 7.14e-44 145
MS.gene29511.t1 MTR_8g036085 62.264 106 40 0 8 113 24 129 8.16e-44 146
MS.gene29511.t1 MTR_1g070220 48.611 144 61 2 5 148 13 143 2.06e-42 141
MS.gene29511.t1 MTR_7g074990 64.646 99 35 0 8 106 21 119 1.36e-41 140
MS.gene29511.t1 MTR_7g075230 41.053 190 92 5 5 177 10 196 1.57e-39 134
MS.gene29511.t1 MTR_7g033800 55.670 97 42 1 6 102 10 105 4.72e-34 119
MS.gene29511.t1 MTR_3g071590 54.082 98 44 1 6 103 7 103 1.95e-33 117
MS.gene29511.t1 MTR_5g083230 38.824 170 77 4 3 167 2 149 2.34e-33 117
MS.gene29511.t1 MTR_6g027700 37.572 173 89 2 1 171 1 156 6.92e-33 117
MS.gene29511.t1 MTR_4g105170 47.368 114 59 1 4 117 8 120 8.11e-33 116
MS.gene29511.t1 MTR_3g031660 47.934 121 56 3 3 117 2 121 3.98e-32 114
MS.gene29511.t1 MTR_6g005070 52.577 97 45 1 6 102 8 103 4.70e-32 113
MS.gene29511.t1 MTR_3g077240 51.485 101 48 1 2 102 5 104 5.63e-32 114
MS.gene29511.t1 MTR_4g083680 50.495 101 49 1 3 103 11 110 8.59e-32 113
MS.gene29511.t1 MTR_2g068760 53.535 99 45 1 3 101 9 106 1.33e-31 112
MS.gene29511.t1 MTR_6g005080 51.546 97 46 1 6 102 9 104 1.48e-30 109
MS.gene29511.t1 MTR_5g083010 44.340 106 58 1 5 110 9 113 2.44e-30 109
MS.gene29511.t1 MTR_5g017950 52.577 97 45 1 6 102 7 102 2.57e-30 113
MS.gene29511.t1 MTR_3g452660 36.686 169 89 5 1 160 1 160 2.93e-30 112
MS.gene29511.t1 MTR_5g083960 50.505 99 48 1 6 104 38 135 3.03e-30 110
MS.gene29511.t1 MTR_3g073690 46.667 105 55 1 5 109 7 110 3.03e-30 110
MS.gene29511.t1 MTR_3g094690 51.515 99 47 1 6 104 46 143 3.17e-30 111
MS.gene29511.t1 MTR_3g071420 47.959 98 50 1 6 103 13 109 5.99e-30 108
MS.gene29511.t1 MTR_3g094690 51.515 99 46 2 6 104 46 142 1.76e-28 106
MS.gene29511.t1 MTR_2g093310 47.917 96 49 1 6 101 32 126 1.26e-27 103
MS.gene29511.t1 MTR_4g060950 46.018 113 52 3 6 117 23 127 2.38e-27 102
MS.gene29511.t1 MTR_5g075020 53.659 82 37 1 6 87 42 122 2.01e-25 98.6
MS.gene29511.t1 MTR_5g075020 53.659 82 37 1 6 87 46 126 2.33e-25 98.6
MS.gene29511.t1 MTR_1g095850 46.809 94 49 1 8 101 73 165 3.17e-25 98.2
MS.gene29511.t1 MTR_8g040900 50.575 87 42 1 1 87 1 86 8.22e-25 97.1
MS.gene29511.t1 MTR_7g028905 42.308 104 59 1 6 109 4 106 6.05e-24 91.7
MS.gene29511.t1 MTR_5g093010 42.157 102 58 1 8 109 6 106 1.34e-23 91.7
MS.gene29511.t1 MTR_4g107450 38.384 99 60 1 3 101 6 103 2.10e-19 84.0
MS.gene29511.t1 MTR_8g017090 35.922 103 65 1 7 109 12 113 3.41e-19 83.6
MS.gene29511.t1 MTR_6g011250 35.922 103 64 2 8 109 10 111 1.70e-17 76.6
MS.gene29511.t1 MTR_8g079660 37.255 102 63 1 8 109 9 109 2.16e-17 77.8
MS.gene29511.t1 MTR_8g079620 37.864 103 63 1 8 110 9 110 6.64e-17 76.3
MS.gene29511.t1 MTR_6g011230 39.506 81 48 1 7 87 11 90 3.99e-16 73.6
MS.gene29511.t1 MTR_2g100020 32.323 99 66 1 3 101 15 112 5.66e-16 74.3
MS.gene29511.t1 MTR_6g011200 32.381 105 69 2 6 109 8 111 8.27e-16 73.6
MS.gene29511.t1 MTR_5g085390 33.333 105 68 2 6 109 8 111 3.22e-14 68.9
MS.gene29511.t1 MTR_8g079580 35.789 95 59 2 8 101 9 102 1.50e-13 67.0
MS.gene29511.t1 MTR_4g099230 30.097 103 70 2 8 109 3 104 5.97e-13 63.9
MS.gene29511.t1 MTR_4g088035 31.111 90 61 1 6 95 5 93 2.25e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29511.t1 AT5G06080 51.596 188 72 4 1 186 1 171 8.16e-59 182
MS.gene29511.t1 AT3G58190 68.868 106 33 0 8 113 12 117 1.06e-50 163
MS.gene29511.t1 AT2G42440 60.656 122 43 1 1 117 1 122 1.24e-49 161
MS.gene29511.t1 AT2G42430 45.304 181 76 3 3 166 11 185 4.75e-47 154
MS.gene29511.t1 AT3G03760 60.714 112 44 0 6 117 50 161 2.93e-46 153
MS.gene29511.t1 AT4G00210 64.000 100 36 0 2 101 6 105 2.93e-46 152
MS.gene29511.t1 AT2G31310 62.500 104 39 0 1 104 1 104 6.47e-45 147
MS.gene29511.t1 AT2G45420 64.356 101 36 0 10 110 40 140 4.30e-43 145
MS.gene29511.t1 AT4G00220 60.396 101 40 0 10 110 20 120 6.36e-41 138
MS.gene29511.t1 AT2G45410 59.783 92 37 0 10 101 19 110 3.31e-38 130
MS.gene29511.t1 AT3G27650 55.670 97 42 1 6 102 38 133 2.91e-34 119
MS.gene29511.t1 AT5G63090 48.276 116 59 1 4 119 8 122 3.29e-33 117
MS.gene29511.t1 AT5G63090 48.276 116 59 1 4 119 8 122 3.29e-33 117
MS.gene29511.t1 AT5G63090 48.276 116 59 1 4 119 8 122 3.29e-33 117
MS.gene29511.t1 AT5G63090 48.276 116 59 1 4 119 8 122 3.29e-33 117
MS.gene29511.t1 AT2G30130 51.923 104 48 2 1 103 1 103 3.10e-32 115
MS.gene29511.t1 AT1G31320 53.261 92 42 1 3 94 9 99 5.75e-31 111
MS.gene29511.t1 AT5G66870 50.000 102 50 1 1 102 1 101 1.09e-29 111
MS.gene29511.t1 AT2G28500 45.133 113 56 2 6 113 54 165 2.06e-29 108
MS.gene29511.t1 AT2G30340 51.515 99 47 1 6 104 52 149 3.49e-29 109
MS.gene29511.t1 AT2G30340 51.515 99 47 1 6 104 51 148 4.09e-29 109
MS.gene29511.t1 AT3G11090 44.037 109 59 2 6 113 10 117 6.90e-29 105
MS.gene29511.t1 AT1G07900 45.536 112 53 2 6 117 32 135 8.17e-29 106
MS.gene29511.t1 AT3G26660 45.833 96 51 1 6 101 4 98 9.95e-29 103
MS.gene29511.t1 AT1G16530 38.462 143 84 3 6 147 13 152 1.33e-28 105
MS.gene29511.t1 AT3G26620 45.833 96 51 1 6 101 4 98 1.64e-28 103
MS.gene29511.t1 AT2G23660 47.917 96 49 1 6 101 4 98 9.58e-27 103
MS.gene29511.t1 AT2G23660 47.917 96 49 1 6 101 4 98 9.58e-27 103
MS.gene29511.t1 AT2G23660 47.917 96 49 1 6 101 4 98 9.58e-27 103
MS.gene29511.t1 AT1G65620 56.098 82 35 1 6 87 8 88 5.57e-26 99.4
MS.gene29511.t1 AT1G65620 56.098 82 35 1 6 87 8 88 5.57e-26 99.4
MS.gene29511.t1 AT1G65620 56.098 82 35 1 6 87 8 88 5.57e-26 99.4
MS.gene29511.t1 AT1G65620 56.098 82 35 1 6 87 8 88 5.57e-26 99.4
MS.gene29511.t1 AT1G65620 56.098 82 35 1 6 87 8 88 5.57e-26 99.4
MS.gene29511.t1 AT2G40470 51.220 82 39 1 6 87 19 99 5.40e-25 96.7
MS.gene29511.t1 AT2G40470 51.220 82 39 1 6 87 44 124 8.16e-25 97.1
MS.gene29511.t1 AT3G50510 40.708 113 66 1 1 113 6 117 4.03e-24 94.4
MS.gene29511.t1 AT3G50510 40.708 113 66 1 1 113 6 117 4.03e-24 94.4
MS.gene29511.t1 AT3G13850 36.893 103 64 1 7 109 36 137 7.06e-20 84.7
MS.gene29511.t1 AT5G35900 39.796 98 56 3 6 102 4 99 5.53e-18 78.6
MS.gene29511.t1 AT3G47870 32.075 106 71 1 3 108 32 136 1.30e-17 79.3
MS.gene29511.t1 AT1G06280 36.842 76 47 1 7 82 24 98 4.21e-16 73.6
MS.gene29511.t1 AT1G72980 31.683 101 68 1 3 103 9 108 1.01e-13 67.4
MS.gene29511.t1 AT4G22700 33.333 96 61 2 8 102 6 99 4.42e-12 62.4

Find 39 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCAGTGCATAAGGTTTA+TGG 0.160867 5.3:+64948458 MS.gene29511:CDS
CGCATGCAAGATCCTATTTA+TGG 0.202738 5.3:+64948569 MS.gene29511:CDS
ATGATCCAAAACTTTGATTA+TGG 0.255926 5.3:-64949400 None:intergenic
TATTACCATAATCAAAGTTT+TGG 0.276932 5.3:+64949395 MS.gene29511:CDS
GTTCCATTATTTGAGTTCAT+TGG 0.312585 5.3:-64949368 None:intergenic
CAAGAGGAGATAGATATTCT+TGG 0.321470 5.3:+64949290 MS.gene29511:CDS
CTTTGGAAAATGACAGGGTT+TGG 0.324866 5.3:+64948338 None:intergenic
GGATTTCCAGAGCCTTTATA+TGG 0.325475 5.3:+64949455 MS.gene29511:CDS
TCTGGAAATCCTTGTGCATT+AGG 0.337625 5.3:-64949443 None:intergenic
ACATTAGAGAAGTTCTTATC+AGG 0.342216 5.3:+64949494 MS.gene29511:CDS
TGAGCAACACAACCATAAAT+AGG 0.353770 5.3:-64948581 None:intergenic
GCACCAATGAACTCAAATAA+TGG 0.356387 5.3:+64949365 MS.gene29511:CDS
CACCCTTGGTTCAAGCATAA+TGG 0.370662 5.3:+64949542 MS.gene29511:CDS
GCCTGTTCATAGGAGAAGTA+TGG 0.380890 5.3:-64948422 None:intergenic
GAGTTGGAATCACCATATAA+AGG 0.394155 5.3:-64949467 None:intergenic
TCCATACTTCTCCTATGAAC+AGG 0.425422 5.3:+64948421 MS.gene29511:CDS
CTTCTCTAATGTATTTGAGT+TGG 0.427053 5.3:-64949483 None:intergenic
CACTATATCTTATGAAGCCT+TGG 0.435812 5.3:+64948544 MS.gene29511:CDS
ATGAGTTGAAGCCTGTTCAT+AGG 0.437710 5.3:-64948432 None:intergenic
GAATCACCATATAAAGGCTC+TGG 0.448083 5.3:-64949461 None:intergenic
ATAAAACTTTGGAAAATGAC+AGG 0.453003 5.3:+64948332 None:intergenic
CACTAGCACACTTTCTCCTT+AGG 0.465254 5.3:-64948385 None:intergenic
AGGGCTTCTTGAACCACCCT+TGG 0.469455 5.3:+64949528 MS.gene29511:CDS
TATCTATGCATTGCAACATC+AGG 0.488764 5.3:+64948604 MS.gene29511:CDS
GTGGAGCATGCAAGTTCCTA+AGG 0.513337 5.3:+64948369 MS.gene29511:CDS
CTCCATTATGCTTGAACCAA+GGG 0.523653 5.3:-64949544 None:intergenic
AGGATCTTGCATGCGAGCCA+AGG 0.545581 5.3:-64948561 None:intergenic
AGATATTCTTGGAAGTGTAA+TGG 0.550072 5.3:+64949301 MS.gene29511:CDS
TCTCCATTATGCTTGAACCA+AGG 0.563541 5.3:-64949545 None:intergenic
TAATGGAGACATGAAGAACT+AGG 0.571172 5.3:+64949559 MS.gene29511:CDS
ACAGGGTTTGGCTCATCATG+TGG 0.589293 5.3:+64948350 MS.gene29511:CDS
CATTATGCTTGAACCAAGGG+TGG 0.607660 5.3:-64949541 None:intergenic
AGTGTTAGTGTTGTGAATTG+TGG 0.611640 5.3:+64949332 MS.gene29511:CDS
GCAGGTTGCTAGCTTGCAAG+AGG 0.615316 5.3:+64949274 MS.gene29511:intron
CTTATCAGGAATTGATCAAG+AGG 0.617949 5.3:+64949508 MS.gene29511:CDS
TAAAACTTTGGAAAATGACA+GGG 0.628064 5.3:+64948333 None:intergenic
TTATCAGGAATTGATCAAGA+GGG 0.643489 5.3:+64949509 MS.gene29511:CDS
GGCTTCATAAGATATAGTGA+TGG 0.646623 5.3:-64948540 None:intergenic
GAGCTAATTCCTAATGCACA+AGG 0.651993 5.3:+64949434 MS.gene29511:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAATTCATTTGTAAGTA+AGG - chr5.3:64949087-64949106 None:intergenic 20.0%
!! CTCAACACAAAAAAAAATTT+AGG + chr5.3:64949164-64949183 MS.gene29511:intron 20.0%
!!! ATTTTTTGTCAAAATCATGA+TGG + chr5.3:64948945-64948964 MS.gene29511:intron 20.0%
!!! TATTACCATAATCAAAGTTT+TGG + chr5.3:64949395-64949414 MS.gene29511:CDS 20.0%
! AAAATGCGGTAAAATATGAT+CGG + chr5.3:64948697-64948716 MS.gene29511:intron 25.0%
! AATGGATACTAGAAATATAG+CGG - chr5.3:64948984-64949003 None:intergenic 25.0%
! AATTCATTTGTAAGTAAGGA+TGG - chr5.3:64949083-64949102 None:intergenic 25.0%
! ATGATCCAAAACTTTGATTA+TGG - chr5.3:64949403-64949422 None:intergenic 25.0%
! ATGCATCAATATATAAGCAA+TGG - chr5.3:64949002-64949021 None:intergenic 25.0%
!!! GTGCAAAAATTTTAAAACCT+TGG - chr5.3:64948827-64948846 None:intergenic 25.0%
ACATTAGAGAAGTTCTTATC+AGG + chr5.3:64949494-64949513 MS.gene29511:CDS 30.0%
ATATCCATATAATGCGACTT+TGG + chr5.3:64948876-64948895 MS.gene29511:intron 30.0%
CTTCTCTAATGTATTTGAGT+TGG - chr5.3:64949486-64949505 None:intergenic 30.0%
CTTTATATTGCACCAAAATG+CGG + chr5.3:64948683-64948702 MS.gene29511:intron 30.0%
TTATCAGGAATTGATCAAGA+GGG + chr5.3:64949509-64949528 MS.gene29511:CDS 30.0%
TTTCTTATGTGTAATTGTGC+AGG + chr5.3:64949256-64949275 MS.gene29511:intron 30.0%
! AGATATTCTTGGAAGTGTAA+TGG + chr5.3:64949301-64949320 MS.gene29511:CDS 30.0%
! GATCATATTTTACCGCATTT+TGG - chr5.3:64948698-64948717 None:intergenic 30.0%
! GTTCCATTATTTGAGTTCAT+TGG - chr5.3:64949371-64949390 None:intergenic 30.0%
! TTTTGGATCATACTTGGATA+TGG + chr5.3:64949412-64949431 MS.gene29511:CDS 30.0%
!! GCATCACTTCTATTTTGAAT+AGG - chr5.3:64948518-64948537 None:intergenic 30.0%
!!! ACAACCATGGTTTTAAATTG+TGG - chr5.3:64948794-64948813 None:intergenic 30.0%
!!! ATTTTAAAACCTTGGTTGTG+CGG - chr5.3:64948819-64948838 None:intergenic 30.0%
!!! TCAAAGTTTTGGATCATACT+TGG + chr5.3:64949406-64949425 MS.gene29511:CDS 30.0%
AATCTAACTAGCATCCACAA+CGG - chr5.3:64948748-64948767 None:intergenic 35.0%
AGTGTTAGTGTTGTGAATTG+TGG + chr5.3:64949332-64949351 MS.gene29511:CDS 35.0%
ATGACCTACACATAATTGTG+GGG + chr5.3:64949210-64949229 MS.gene29511:intron 35.0%
CAAGAGGAGATAGATATTCT+TGG + chr5.3:64949290-64949309 MS.gene29511:CDS 35.0%
CACTATATCTTATGAAGCCT+TGG + chr5.3:64948544-64948563 MS.gene29511:CDS 35.0%
CATGACCTACACATAATTGT+GGG + chr5.3:64949209-64949228 MS.gene29511:intron 35.0%
CTTATCAGGAATTGATCAAG+AGG + chr5.3:64949508-64949527 MS.gene29511:CDS 35.0%
GAGTTGGAATCACCATATAA+AGG - chr5.3:64949470-64949489 None:intergenic 35.0%
GATCCAGAAAGTTTGAGTAA+TGG - chr5.3:64949061-64949080 None:intergenic 35.0%
GCACCAATGAACTCAAATAA+TGG + chr5.3:64949365-64949384 MS.gene29511:CDS 35.0%
GGCCTAAAAAATTCTCTACA+CGG + chr5.3:64949185-64949204 MS.gene29511:intron 35.0%
GGCTTCATAAGATATAGTGA+TGG - chr5.3:64948543-64948562 None:intergenic 35.0%
GTTGATATTGTGGAAAGTTG+TGG + chr5.3:64948851-64948870 MS.gene29511:intron 35.0%
TATCTATGCATTGCAACATC+AGG + chr5.3:64948604-64948623 MS.gene29511:CDS 35.0%
TGAGCAACACAACCATAAAT+AGG - chr5.3:64948584-64948603 None:intergenic 35.0%
TTGCACAATCGTTGATATTG+TGG + chr5.3:64948841-64948860 MS.gene29511:intron 35.0%
! CAGACCACAATTTAAAACCA+TGG + chr5.3:64948787-64948806 MS.gene29511:intron 35.0%
!! TCATTTTTCAGCAGTGCATA+AGG + chr5.3:64948451-64948470 MS.gene29511:CDS 35.0%
CACATAATTGTGGGGTGTAA+TGG + chr5.3:64949218-64949237 MS.gene29511:intron 40.0%
CCACAATTATGTGTAGGTCA+TGG - chr5.3:64949211-64949230 None:intergenic 40.0%
CCAGAAAGTTTGAGTAATGG+AGG - chr5.3:64949058-64949077 None:intergenic 40.0%
CCATGACCTACACATAATTG+TGG + chr5.3:64949208-64949227 MS.gene29511:intron 40.0%
CCTCCATTACTCAAACTTTC+TGG + chr5.3:64949055-64949074 MS.gene29511:intron 40.0%
CGCATGCAAGATCCTATTTA+TGG + chr5.3:64948569-64948588 MS.gene29511:CDS 40.0%
CTCCATTATGCTTGAACCAA+GGG - chr5.3:64949547-64949566 None:intergenic 40.0%
GAATCACCATATAAAGGCTC+TGG - chr5.3:64949464-64949483 None:intergenic 40.0%
GAGCTAATTCCTAATGCACA+AGG + chr5.3:64949434-64949453 MS.gene29511:CDS 40.0%
GGATTTCCAGAGCCTTTATA+TGG + chr5.3:64949455-64949474 MS.gene29511:CDS 40.0%
TACACCCCACAATTATGTGT+AGG - chr5.3:64949217-64949236 None:intergenic 40.0%
TCAGCAGTGCATAAGGTTTA+TGG + chr5.3:64948458-64948477 MS.gene29511:CDS 40.0%
TCCATACTTCTCCTATGAAC+AGG + chr5.3:64948421-64948440 MS.gene29511:CDS 40.0%
TCTCCATTATGCTTGAACCA+AGG - chr5.3:64949548-64949567 None:intergenic 40.0%
TCTGGAAATCCTTGTGCATT+AGG - chr5.3:64949446-64949465 None:intergenic 40.0%
TGCACCAAAGTCGCATTATA+TGG - chr5.3:64948883-64948902 None:intergenic 40.0%
TGTGGATGCTAGTTAGATTG+TGG + chr5.3:64948749-64948768 MS.gene29511:intron 40.0%
TTGCAATTGTAATGCCGTTG+TGG + chr5.3:64948731-64948750 MS.gene29511:intron 40.0%
! ATGAGTTGAAGCCTGTTCAT+AGG - chr5.3:64948435-64948454 None:intergenic 40.0%
! ATGCGACTTTGGTGCATATT+TGG + chr5.3:64948887-64948906 MS.gene29511:intron 40.0%
! GTGGTCTGCAACATCAATTT+TGG - chr5.3:64948775-64948794 None:intergenic 40.0%
!!! GGCCGTGTAGAGAATTTTTT+AGG - chr5.3:64949190-64949209 None:intergenic 40.0%
CACCCTTGGTTCAAGCATAA+TGG + chr5.3:64949542-64949561 MS.gene29511:CDS 45.0%
CACTAGCACACTTTCTCCTT+AGG - chr5.3:64948388-64948407 None:intergenic 45.0%
CATTATGCTTGAACCAAGGG+TGG - chr5.3:64949544-64949563 None:intergenic 45.0%
GCCTGTTCATAGGAGAAGTA+TGG - chr5.3:64948425-64948444 None:intergenic 45.0%
GCGGTAAAATATGATCGGTG+TGG + chr5.3:64948702-64948721 MS.gene29511:intron 45.0%
GTGGAGCATGCAAGTTCCTA+AGG + chr5.3:64948369-64948388 MS.gene29511:CDS 50.0%
TTGTGGGGTGTAATGGCAAG+AGG + chr5.3:64949225-64949244 MS.gene29511:intron 50.0%
! ACAGGGTTTGGCTCATCATG+TGG + chr5.3:64948350-64948369 MS.gene29511:CDS 50.0%
AGGATCTTGCATGCGAGCCA+AGG - chr5.3:64948564-64948583 None:intergenic 55.0%
AGGGCTTCTTGAACCACCCT+TGG + chr5.3:64949528-64949547 MS.gene29511:CDS 55.0%
TGGTTGTGACCGCACAACCA+AGG + chr5.3:64948807-64948826 MS.gene29511:intron 55.0%
TGGTTGTGCGGTCACAACCA+TGG - chr5.3:64948807-64948826 None:intergenic 55.0%
! GCAGGTTGCTAGCTTGCAAG+AGG + chr5.3:64949274-64949293 MS.gene29511:intron 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 64948347 64949580 64948347 ID=MS.gene29511
chr5.3 mRNA 64948347 64949580 64948347 ID=MS.gene29511.t1;Parent=MS.gene29511
chr5.3 exon 64948347 64948625 64948347 ID=MS.gene29511.t1.exon1;Parent=MS.gene29511.t1
chr5.3 CDS 64948347 64948625 64948347 ID=cds.MS.gene29511.t1;Parent=MS.gene29511.t1
chr5.3 exon 64949278 64949580 64949278 ID=MS.gene29511.t1.exon2;Parent=MS.gene29511.t1
chr5.3 CDS 64949278 64949580 64949278 ID=cds.MS.gene29511.t1;Parent=MS.gene29511.t1
Gene Sequence

>MS.gene29511

ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGTGCTAGTGATTGTGTTTTTGCTCCATACTTCTCCTATGAACAGGCTTCAACTCATTTTTCAGCAGTGCATAAGGTTTATGGAGCTAGTAATGTCTCTAGACTATTGTCACATCTTCCTATTCAAAATAGAAGTGATGCTGCCATCACTATATCTTATGAAGCCTTGGCTCGCATGCAAGATCCTATTTATGGTTGTGTTGCTCATATCTATGCATTGCAACATCAGGTTAATTTCTATGTTGTGACTATGATTTTAAATTGCAATTGCAGTTGCGTTGTGAATCTTTATATTGCACCAAAATGCGGTAAAATATGATCGGTGTGGTCGAAATTGCAATTGTAATGCCGTTGTGGATGCTAGTTAGATTGTGGCCAAAATTGATGTTGCAGACCACAATTTAAAACCATGGTTGTGACCGCACAACCAAGGTTTTAAAATTTTTGCACAATCGTTGATATTGTGGAAAGTTGTGGTCATATCCATATAATGCGACTTTGGTGCATATTTGGATGAGCTACTGTAATTTTATGAAACTATTAAGTGTATTTTTTGTCAAAATCATGATGGCTTGTCATTCTCACCGCTATATTTCTAGTATCCATTGCTTATATATTGATGCATATTTTGAGCAAATATTTCTAGTATACGATTTTACCTCCATTACTCAAACTTTCTGGATCCATCCTTACTTACAAATGAATTGAATAAAATTAAAACTCTAAAATTGTGCTTGTTATAAATAAGAAGTTAGATCTTACAAAGTCTCAACACAAAAAAAAATTTAGGCCTAAAAAATTCTCTACACGGCCATGACCTACACATAATTGTGGGGTGTAATGGCAAGAGGAGATAGATTTTCTTATGTGTAATTGTGCAGGTTGCTAGCTTGCAAGAGGAGATAGATATTCTTGGAAGTGTAATGGCAAATTCAAGTGTTAGTGTTGTGAATTGTGGCAATGTTCAAGCACCAATGAACTCAAATAATGGAACAGAATATTACCATAATCAAAGTTTTGGATCATACTTGGATATGGAGCTAATTCCTAATGCACAAGGATTTCCAGAGCCTTTATATGGTGATTCCAACTCAAATACATTAGAGAAGTTCTTATCAGGAATTGATCAAGAGGGCTTCTTGAACCACCCTTGGTTCAAGCATAATGGAGACATGAAGAACTAG
Protein sequence

>MS.gene29511.t1

MTGFGSSCGACKFLRRKCASDCVFAPYFSYEQASTHFSAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDILGSVMANSSVSVVNCGNVQAPMNSNNGTEYYHNQSFGSYLDMELIPNAQGFPEPLYGDSNSNTLEKFLSGIDQEGFLNHPWFKHNGDMKN