Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29646.t1 | XP_003616637.2 | 59.8 | 323 | 46 | 3 | 1 | 239 | 464 | 786 | 4.10E-89 | 337.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29646.t1 | Q9LY50 | 40.6 | 320 | 97 | 4 | 13 | 239 | 477 | 796 | 6.7e-56 | 218.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29646.t1 | G7KH13 | 59.8 | 323 | 46 | 3 | 1 | 239 | 464 | 786 | 2.9e-89 | 337.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29646.t1 | MTR_5g082630 | 59.752 | 323 | 46 | 3 | 1 | 239 | 464 | 786 | 8.16e-109 | 331 |
MS.gene29646.t1 | MTR_3g070800 | 48.923 | 325 | 80 | 5 | 1 | 239 | 443 | 767 | 1.63e-80 | 256 |
MS.gene29646.t1 | MTR_3g464080 | 42.492 | 313 | 94 | 4 | 12 | 239 | 474 | 785 | 5.83e-70 | 229 |
MS.gene29646.t1 | MTR_4g035180 | 33.453 | 278 | 131 | 6 | 1 | 237 | 459 | 723 | 3.85e-35 | 132 |
MS.gene29646.t1 | MTR_4g067230 | 29.180 | 305 | 122 | 7 | 16 | 234 | 497 | 793 | 6.61e-29 | 114 |
MS.gene29646.t1 | MTR_2g098910 | 28.197 | 305 | 129 | 6 | 16 | 239 | 506 | 801 | 9.91e-29 | 114 |
MS.gene29646.t1 | MTR_1g064560 | 28.800 | 250 | 109 | 7 | 6 | 197 | 486 | 724 | 4.75e-23 | 97.8 |
MS.gene29646.t1 | MTR_5g047110 | 27.817 | 284 | 138 | 8 | 19 | 239 | 506 | 785 | 1.08e-20 | 90.9 |
MS.gene29646.t1 | MTR_2g096950 | 25.806 | 310 | 125 | 8 | 18 | 234 | 60 | 357 | 1.17e-20 | 90.1 |
MS.gene29646.t1 | MTR_1g100110 | 28.169 | 284 | 127 | 9 | 22 | 239 | 490 | 762 | 4.95e-20 | 89.0 |
MS.gene29646.t1 | MTR_2g006910 | 26.769 | 325 | 137 | 9 | 2 | 234 | 281 | 596 | 1.18e-19 | 87.8 |
MS.gene29646.t1 | MTR_2g006910 | 26.769 | 325 | 137 | 9 | 2 | 234 | 281 | 596 | 1.22e-19 | 87.8 |
MS.gene29646.t1 | MTR_3g088750 | 25.926 | 297 | 124 | 7 | 20 | 234 | 414 | 696 | 5.79e-19 | 85.9 |
MS.gene29646.t1 | MTR_8g059605 | 25.161 | 310 | 145 | 7 | 3 | 234 | 437 | 737 | 1.13e-18 | 85.1 |
MS.gene29646.t1 | MTR_8g059605 | 25.161 | 310 | 145 | 7 | 3 | 234 | 632 | 932 | 1.19e-18 | 85.1 |
MS.gene29646.t1 | MTR_2g084120 | 25.000 | 296 | 135 | 9 | 20 | 233 | 80 | 370 | 1.42e-18 | 84.0 |
MS.gene29646.t1 | MTR_7g015390 | 26.332 | 319 | 142 | 9 | 3 | 239 | 504 | 811 | 2.01e-18 | 84.3 |
MS.gene29646.t1 | MTR_5g047060 | 26.087 | 299 | 139 | 7 | 19 | 239 | 507 | 801 | 2.10e-18 | 84.3 |
MS.gene29646.t1 | MTR_1g104555 | 26.592 | 267 | 137 | 8 | 18 | 234 | 404 | 661 | 3.59e-17 | 80.5 |
MS.gene29646.t1 | MTR_7g015670 | 24.688 | 320 | 147 | 10 | 3 | 239 | 506 | 814 | 3.87e-17 | 80.5 |
MS.gene29646.t1 | MTR_3g011630 | 24.221 | 289 | 136 | 5 | 18 | 233 | 40 | 318 | 5.04e-17 | 79.3 |
MS.gene29646.t1 | MTR_4g061570 | 27.106 | 273 | 123 | 10 | 18 | 235 | 83 | 334 | 1.98e-16 | 77.8 |
MS.gene29646.t1 | MTR_8g014500 | 28.514 | 249 | 85 | 8 | 15 | 177 | 340 | 581 | 4.43e-16 | 77.4 |
MS.gene29646.t1 | MTR_3g067765 | 26.728 | 217 | 120 | 7 | 49 | 234 | 97 | 305 | 1.35e-15 | 74.7 |
MS.gene29646.t1 | MTR_8g014500 | 27.074 | 229 | 82 | 6 | 15 | 164 | 340 | 562 | 1.81e-15 | 75.5 |
MS.gene29646.t1 | MTR_8g014500 | 27.074 | 229 | 82 | 6 | 15 | 164 | 340 | 562 | 2.16e-15 | 75.5 |
MS.gene29646.t1 | MTR_7g015760 | 26.244 | 221 | 86 | 6 | 4 | 153 | 7 | 221 | 2.31e-15 | 74.3 |
MS.gene29646.t1 | MTR_8g020920 | 24.510 | 306 | 135 | 7 | 20 | 239 | 67 | 362 | 5.69e-15 | 73.9 |
MS.gene29646.t1 | MTR_2g022810 | 24.916 | 297 | 130 | 8 | 20 | 233 | 67 | 353 | 1.02e-14 | 72.8 |
MS.gene29646.t1 | MTR_5g019040 | 32.642 | 193 | 106 | 8 | 59 | 233 | 375 | 561 | 1.64e-14 | 72.8 |
MS.gene29646.t1 | MTR_8g088780 | 25.157 | 318 | 148 | 9 | 4 | 234 | 283 | 597 | 1.75e-14 | 72.8 |
MS.gene29646.t1 | MTR_7g015750 | 25.926 | 243 | 80 | 8 | 2 | 153 | 16 | 249 | 5.98e-14 | 70.5 |
MS.gene29646.t1 | MTR_7g018130 | 26.582 | 237 | 80 | 8 | 4 | 152 | 7 | 237 | 1.46e-13 | 69.3 |
MS.gene29646.t1 | MTR_4g109010 | 22.697 | 304 | 130 | 9 | 20 | 237 | 525 | 809 | 1.58e-13 | 70.1 |
MS.gene29646.t1 | MTR_8g042370 | 25.200 | 250 | 104 | 7 | 18 | 194 | 98 | 337 | 1.20e-12 | 67.0 |
MS.gene29646.t1 | MTR_1g027660 | 24.573 | 293 | 135 | 8 | 20 | 234 | 376 | 660 | 2.41e-12 | 66.2 |
MS.gene29646.t1 | MTR_1g027640 | 26.222 | 225 | 123 | 7 | 45 | 234 | 472 | 688 | 6.83e-12 | 65.1 |
MS.gene29646.t1 | MTR_1g010260 | 25.503 | 298 | 116 | 10 | 3 | 214 | 400 | 677 | 9.77e-12 | 64.7 |
MS.gene29646.t1 | MTR_7g015620 | 38.532 | 109 | 51 | 4 | 9 | 108 | 506 | 607 | 3.45e-11 | 62.8 |
MS.gene29646.t1 | MTR_1g009270 | 29.286 | 140 | 62 | 4 | 49 | 157 | 403 | 536 | 4.04e-11 | 62.8 |
MS.gene29646.t1 | MTR_3g019120 | 26.601 | 203 | 87 | 5 | 20 | 160 | 216 | 418 | 6.89e-11 | 62.0 |
MS.gene29646.t1 | MTR_3g019120 | 26.601 | 203 | 87 | 5 | 20 | 160 | 176 | 378 | 6.94e-11 | 62.0 |
MS.gene29646.t1 | MTR_1g010240 | 27.059 | 255 | 113 | 10 | 3 | 214 | 367 | 591 | 8.14e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29646.t1 | AT3G55950 | 42.470 | 332 | 98 | 4 | 1 | 239 | 465 | 796 | 1.47e-68 | 225 |
MS.gene29646.t1 | AT3G59420 | 28.618 | 304 | 127 | 5 | 16 | 238 | 496 | 790 | 3.55e-28 | 112 |
MS.gene29646.t1 | AT5G47850 | 33.624 | 229 | 104 | 4 | 49 | 238 | 515 | 734 | 1.18e-27 | 111 |
MS.gene29646.t1 | AT2G39180 | 28.992 | 238 | 97 | 7 | 20 | 197 | 507 | 732 | 3.93e-23 | 98.2 |
MS.gene29646.t1 | AT1G54820 | 26.910 | 301 | 130 | 9 | 18 | 233 | 133 | 428 | 1.31e-20 | 90.1 |
MS.gene29646.t1 | AT3G09780 | 30.252 | 238 | 98 | 7 | 17 | 197 | 505 | 731 | 2.78e-20 | 89.7 |
MS.gene29646.t1 | AT1G67720 | 26.846 | 298 | 129 | 8 | 20 | 239 | 596 | 882 | 2.96e-20 | 89.7 |
MS.gene29646.t1 | AT4G39110 | 27.243 | 301 | 125 | 8 | 20 | 239 | 514 | 801 | 2.22e-19 | 87.0 |
MS.gene29646.t1 | AT1G54820 | 28.458 | 253 | 92 | 8 | 18 | 185 | 133 | 381 | 4.45e-18 | 82.8 |
MS.gene29646.t1 | AT1G29750 | 25.484 | 310 | 143 | 9 | 3 | 234 | 654 | 953 | 2.62e-17 | 81.3 |
MS.gene29646.t1 | AT1G29750 | 25.484 | 310 | 143 | 9 | 3 | 234 | 639 | 938 | 2.69e-17 | 81.3 |
MS.gene29646.t1 | AT3G19300 | 29.545 | 220 | 101 | 8 | 50 | 230 | 387 | 591 | 3.81e-17 | 80.5 |
MS.gene29646.t1 | AT5G28680 | 26.087 | 299 | 132 | 9 | 20 | 239 | 509 | 797 | 4.25e-17 | 80.5 |
MS.gene29646.t1 | AT5G28680 | 26.087 | 299 | 132 | 9 | 20 | 239 | 509 | 797 | 4.25e-17 | 80.5 |
MS.gene29646.t1 | AT5G61350 | 27.193 | 228 | 123 | 6 | 49 | 239 | 585 | 806 | 5.36e-17 | 80.1 |
MS.gene29646.t1 | AT3G04690 | 26.087 | 299 | 132 | 9 | 20 | 239 | 505 | 793 | 1.80e-16 | 78.6 |
MS.gene29646.t1 | AT2G19230 | 28.378 | 222 | 113 | 8 | 49 | 234 | 629 | 840 | 6.22e-16 | 77.0 |
MS.gene29646.t1 | AT2G19230 | 28.378 | 222 | 113 | 8 | 49 | 234 | 628 | 839 | 7.01e-16 | 77.0 |
MS.gene29646.t1 | AT2G07180 | 24.585 | 301 | 131 | 7 | 20 | 234 | 78 | 368 | 9.90e-16 | 76.3 |
MS.gene29646.t1 | AT2G07180 | 24.585 | 301 | 131 | 7 | 20 | 234 | 78 | 368 | 9.90e-16 | 76.3 |
MS.gene29646.t1 | AT1G11050 | 25.581 | 301 | 135 | 7 | 20 | 234 | 283 | 580 | 1.02e-15 | 76.3 |
MS.gene29646.t1 | AT1G79680 | 24.333 | 300 | 137 | 10 | 15 | 234 | 416 | 705 | 6.23e-15 | 73.9 |
MS.gene29646.t1 | AT1G51890 | 25.991 | 227 | 114 | 8 | 49 | 235 | 565 | 777 | 5.36e-14 | 71.2 |
MS.gene29646.t1 | AT1G51890 | 25.991 | 227 | 114 | 8 | 49 | 235 | 357 | 569 | 5.40e-14 | 71.2 |
MS.gene29646.t1 | AT1G51890 | 25.991 | 227 | 114 | 8 | 49 | 235 | 629 | 841 | 7.72e-14 | 70.9 |
MS.gene29646.t1 | AT1G16130 | 23.826 | 298 | 136 | 9 | 17 | 234 | 401 | 687 | 6.94e-13 | 68.2 |
MS.gene29646.t1 | AT1G16150 | 23.826 | 298 | 136 | 10 | 17 | 234 | 409 | 695 | 1.75e-12 | 67.0 |
MS.gene29646.t1 | AT1G51890 | 25.000 | 244 | 117 | 8 | 49 | 235 | 629 | 863 | 3.43e-12 | 66.2 |
Find 44 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCTCCTTTCATGATTAT+TGG | 0.143018 | 5.1:+64755165 | None:intergenic |
ATAGTAGTTTATTGAATTCT+TGG | 0.171769 | 5.1:-64755561 | MS.gene29646:CDS |
ACAGCGAATAGTGATGTTTA+TGG | 0.256697 | 5.1:-64755288 | MS.gene29646:CDS |
TCGATGGAACCGTGTGATTA+TGG | 0.272423 | 5.1:+64755488 | None:intergenic |
GAAAAGATAGGCAAACAATA+AGG | 0.283760 | 5.1:-64755041 | MS.gene29646:CDS |
ACATTAAATCCGGTAACATT+TGG | 0.303977 | 5.1:+64755315 | None:intergenic |
AAGGGATACTGTGGCTAGTT+TGG | 0.310277 | 5.1:-64755022 | MS.gene29646:CDS |
AATAGTGATGTTTATGGTCT+TGG | 0.335266 | 5.1:-64755282 | MS.gene29646:CDS |
ATAATCAAGAATGATGAAAA+TGG | 0.342743 | 5.1:-64755222 | MS.gene29646:CDS |
CATTAAATCCGGTAACATTT+GGG | 0.346747 | 5.1:+64755316 | None:intergenic |
TGCAATGCATTGTGTGCATT+TGG | 0.379439 | 5.1:-64755067 | MS.gene29646:CDS |
ATAGTGATGTTTATGGTCTT+GGG | 0.386155 | 5.1:-64755281 | MS.gene29646:CDS |
CGCTGTTAATACATTAAATC+CGG | 0.386187 | 5.1:+64755305 | None:intergenic |
TTCTCACTTGAGAACAAGAT+TGG | 0.386390 | 5.1:-64755845 | MS.gene29646:CDS |
GCTTCTGTTTCATTCATCTC+TGG | 0.389313 | 5.1:+64755111 | None:intergenic |
TTCAATGTATGATCATTTGC+AGG | 0.389763 | 5.1:-64755605 | MS.gene29646:CDS |
GTGAACTCTTCTGACCTATC+TGG | 0.390157 | 5.1:+64755899 | None:intergenic |
CTAGAATTATTAACAGGAAA+AGG | 0.394745 | 5.1:-64755249 | MS.gene29646:CDS |
ACATCGATCCCAAATGTTAC+CGG | 0.437121 | 5.1:-64755324 | MS.gene29646:CDS |
TATTGAATTCTTGGAAAATG+AGG | 0.452817 | 5.1:-64755552 | MS.gene29646:CDS |
AAAAGATAGGCAAACAATAA+GGG | 0.453759 | 5.1:-64755040 | MS.gene29646:CDS |
AAGATTGGTGCTGGAAGTTA+TGG | 0.476688 | 5.1:-64755830 | MS.gene29646:CDS |
CTCAAGTGAGAAATTGTTTG+TGG | 0.482381 | 5.1:+64755856 | None:intergenic |
CTTGAGAACAAGATTGGTGC+TGG | 0.482427 | 5.1:-64755839 | MS.gene29646:CDS |
AATGAGGATCAAAATTGTGT+TGG | 0.512914 | 5.1:-64755536 | MS.gene29646:CDS |
AATTGTGTTGGATCCTCCGC+GGG | 0.515242 | 5.1:-64755524 | MS.gene29646:CDS |
TCTGTTTCATTCATCTCTGG+TGG | 0.521822 | 5.1:+64755114 | None:intergenic |
TGCATTTGGAAGGAAAAGAT+AGG | 0.523933 | 5.1:-64755053 | MS.gene29646:CDS |
GTGTATGAGTTCATGAAGAA+TGG | 0.542695 | 5.1:-64755628 | MS.gene29646:CDS |
CGTCAACAAAACATCCAGAT+AGG | 0.554779 | 5.1:-64755913 | MS.gene29646:CDS |
TACAAACCGACGTAAGCAGC+AGG | 0.560750 | 5.1:-64755358 | MS.gene29646:CDS |
GCAGTGCCAATAATCATGAA+AGG | 0.579666 | 5.1:-64755171 | MS.gene29646:CDS |
ACTGTTCCTGCTGCTTACGT+CGG | 0.584109 | 5.1:+64755352 | None:intergenic |
GATGAATGAAACAGAAGCTG+TGG | 0.590374 | 5.1:-64755106 | MS.gene29646:CDS |
TAGTGATGTTTATGGTCTTG+GGG | 0.597124 | 5.1:-64755280 | MS.gene29646:CDS |
ATGCATTGTGTGCATTTGGA+AGG | 0.598416 | 5.1:-64755063 | MS.gene29646:CDS |
ATCAAGAATGATGAAAATGG+AGG | 0.636436 | 5.1:-64755219 | MS.gene29646:CDS |
GCAAACAATAAGGGATACTG+TGG | 0.642932 | 5.1:-64755031 | MS.gene29646:CDS |
ATAATGAGGCGTCAAAGAAG+CGG | 0.671662 | 5.1:-64755941 | MS.gene29646:CDS |
AAATTGTGTTGGATCCTCCG+CGG | 0.699369 | 5.1:-64755525 | MS.gene29646:CDS |
TGAGTATCTCCATAATCACA+CGG | 0.716369 | 5.1:-64755497 | MS.gene29646:intron |
AGATACTCAATTCCCCGCGG+AGG | 0.717917 | 5.1:+64755511 | None:intergenic |
ATTGTGTTGGATCCTCCGCG+GGG | 0.770648 | 5.1:-64755523 | MS.gene29646:CDS |
TGGAGATACTCAATTCCCCG+CGG | 0.775504 | 5.1:+64755508 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATCAAGAATGATGAAAA+TGG | - | chr5.1:64755718-64755737 | MS.gene29646:intron | 20.0% |
!! | ATAGTAGTTTATTGAATTCT+TGG | - | chr5.1:64755379-64755398 | MS.gene29646:intron | 20.0% |
!!! | GTTTTACTAGAATTATTAAC+AGG | - | chr5.1:64755685-64755704 | MS.gene29646:intron | 20.0% |
! | AAAAGATAGGCAAACAATAA+GGG | - | chr5.1:64755900-64755919 | MS.gene29646:CDS | 25.0% |
! | AATTCTCCTTTCATGATTAT+TGG | + | chr5.1:64755778-64755797 | None:intergenic | 25.0% |
! | CTAGAATTATTAACAGGAAA+AGG | - | chr5.1:64755691-64755710 | MS.gene29646:intron | 25.0% |
! | TATTGAATTCTTGGAAAATG+AGG | - | chr5.1:64755388-64755407 | MS.gene29646:intron | 25.0% |
! | TGAAAAAGATGAAAGACTAT+TGG | - | chr5.1:64755290-64755309 | MS.gene29646:CDS | 25.0% |
!! | AGGAGAATTGATGAAATTTT+TGG | - | chr5.1:64755789-64755808 | MS.gene29646:intron | 25.0% |
!!! | GATGAAAGTTTTTCAATAGA+AGG | - | chr5.1:64755188-64755207 | MS.gene29646:CDS | 25.0% |
AAATGAGGCAACAATCAAAA+GGG | - | chr5.1:64755149-64755168 | MS.gene29646:CDS | 30.0% | |
AAGCATTTGGTTAGATTAGT+CGG | - | chr5.1:64755258-64755277 | MS.gene29646:CDS | 30.0% | |
AATAGTGATGTTTATGGTCT+TGG | - | chr5.1:64755658-64755677 | MS.gene29646:CDS | 30.0% | |
AATGAGGATCAAAATTGTGT+TGG | - | chr5.1:64755404-64755423 | MS.gene29646:intron | 30.0% | |
ACATTAAATCCGGTAACATT+TGG | + | chr5.1:64755628-64755647 | None:intergenic | 30.0% | |
ATAGTGATGTTTATGGTCTT+GGG | - | chr5.1:64755659-64755678 | MS.gene29646:CDS | 30.0% | |
ATCAAGAATGATGAAAATGG+AGG | - | chr5.1:64755721-64755740 | MS.gene29646:intron | 30.0% | |
CATTAAATCCGGTAACATTT+GGG | + | chr5.1:64755627-64755646 | None:intergenic | 30.0% | |
CGCTGTTAATACATTAAATC+CGG | + | chr5.1:64755638-64755657 | None:intergenic | 30.0% | |
CGGATTATCAATTATGAGTT+CGG | - | chr5.1:64755545-64755564 | MS.gene29646:CDS | 30.0% | |
GAAAAGATAGGCAAACAATA+AGG | - | chr5.1:64755899-64755918 | MS.gene29646:CDS | 30.0% | |
GCATGATAAAAAGGCTAATT+CGG | + | chr5.1:64755229-64755248 | None:intergenic | 30.0% | |
TAAATGAGGCAACAATCAAA+AGG | - | chr5.1:64755148-64755167 | MS.gene29646:CDS | 30.0% | |
TTCAATGTATGATCATTTGC+AGG | - | chr5.1:64755335-64755354 | MS.gene29646:CDS | 30.0% | |
!! | GTTGTTTTCAAAGGTAAATG+AGG | - | chr5.1:64755134-64755153 | MS.gene29646:CDS | 30.0% |
!!! | AGTTATGGTGTTGTTTTCAA+AGG | - | chr5.1:64755125-64755144 | MS.gene29646:CDS | 30.0% |
AATGAGGCAACAATCAAAAG+GGG | - | chr5.1:64755150-64755169 | MS.gene29646:CDS | 35.0% | |
ACAGCGAATAGTGATGTTTA+TGG | - | chr5.1:64755652-64755671 | MS.gene29646:CDS | 35.0% | |
ACATTCTCATTGACGTGAAT+TGG | - | chr5.1:64755502-64755521 | MS.gene29646:CDS | 35.0% | |
ATGTCTCGATGAATTATCGA+TGG | + | chr5.1:64755471-64755490 | None:intergenic | 35.0% | |
CTCAAGTGAGAAATTGTTTG+TGG | + | chr5.1:64755087-64755106 | None:intergenic | 35.0% | |
GTGATGTAGGCATGATAAAA+AGG | + | chr5.1:64755238-64755257 | None:intergenic | 35.0% | |
GTGTATGAGTTCATGAAGAA+TGG | - | chr5.1:64755312-64755331 | MS.gene29646:CDS | 35.0% | |
TAACCAAATGCTTGTGATGT+AGG | + | chr5.1:64755251-64755270 | None:intergenic | 35.0% | |
TGAGTATCTCCATAATCACA+CGG | - | chr5.1:64755443-64755462 | MS.gene29646:intron | 35.0% | |
TGCATTTGGAAGGAAAAGAT+AGG | - | chr5.1:64755887-64755906 | MS.gene29646:CDS | 35.0% | |
TTCTCACTTGAGAACAAGAT+TGG | - | chr5.1:64755095-64755114 | MS.gene29646:CDS | 35.0% | |
! | TAGTGATGTTTATGGTCTTG+GGG | - | chr5.1:64755660-64755679 | MS.gene29646:CDS | 35.0% |
ACATCGATCCCAAATGTTAC+CGG | - | chr5.1:64755616-64755635 | MS.gene29646:CDS | 40.0% | |
ATGCATTGTGTGCATTTGGA+AGG | - | chr5.1:64755877-64755896 | MS.gene29646:CDS | 40.0% | |
ATGCCTACATCACAAGCATT+TGG | - | chr5.1:64755245-64755264 | MS.gene29646:CDS | 40.0% | |
CGTCAACAAAACATCCAGAT+AGG | - | chr5.1:64755027-64755046 | MS.gene29646:CDS | 40.0% | |
GATGAATGAAACAGAAGCTG+TGG | - | chr5.1:64755834-64755853 | MS.gene29646:CDS | 40.0% | |
GCAAACAATAAGGGATACTG+TGG | - | chr5.1:64755909-64755928 | MS.gene29646:CDS | 40.0% | |
GCAGTGCCAATAATCATGAA+AGG | - | chr5.1:64755769-64755788 | MS.gene29646:intron | 40.0% | |
GCTTCTGTTTCATTCATCTC+TGG | + | chr5.1:64755832-64755851 | None:intergenic | 40.0% | |
TCTCATTGACGTGAATTGGA+TGG | - | chr5.1:64755506-64755525 | MS.gene29646:CDS | 40.0% | |
TCTGTTTCATTCATCTCTGG+TGG | + | chr5.1:64755829-64755848 | None:intergenic | 40.0% | |
TGCAATGCATTGTGTGCATT+TGG | - | chr5.1:64755873-64755892 | MS.gene29646:CDS | 40.0% | |
! | ATGGCTAGAGTGTCTGATAT+CGG | - | chr5.1:64755525-64755544 | MS.gene29646:CDS | 40.0% |
!! | AAGATTGGTGCTGGAAGTTA+TGG | - | chr5.1:64755110-64755129 | MS.gene29646:CDS | 40.0% |
AAATTGTGTTGGATCCTCCG+CGG | - | chr5.1:64755415-64755434 | MS.gene29646:intron | 45.0% | |
CTTGAGAACAAGATTGGTGC+TGG | - | chr5.1:64755101-64755120 | MS.gene29646:CDS | 45.0% | |
GTGAACTCTTCTGACCTATC+TGG | + | chr5.1:64755044-64755063 | None:intergenic | 45.0% | |
TCGATGGAACCGTGTGATTA+TGG | + | chr5.1:64755455-64755474 | None:intergenic | 45.0% | |
! | AAGGGATACTGTGGCTAGTT+TGG | - | chr5.1:64755918-64755937 | MS.gene29646:CDS | 45.0% |
AATTGTGTTGGATCCTCCGC+GGG | - | chr5.1:64755416-64755435 | MS.gene29646:intron | 50.0% | |
TACAAACCGACGTAAGCAGC+AGG | - | chr5.1:64755582-64755601 | MS.gene29646:CDS | 50.0% | |
TGGAGATACTCAATTCCCCG+CGG | + | chr5.1:64755435-64755454 | None:intergenic | 50.0% | |
! | ACTGTTCCTGCTGCTTACGT+CGG | + | chr5.1:64755591-64755610 | None:intergenic | 50.0% |
AGATACTCAATTCCCCGCGG+AGG | + | chr5.1:64755432-64755451 | None:intergenic | 55.0% | |
ATTGTGTTGGATCCTCCGCG+GGG | - | chr5.1:64755417-64755436 | MS.gene29646:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 64755002 | 64755960 | 64755002 | ID=MS.gene29646 |
chr5.1 | mRNA | 64755002 | 64755960 | 64755002 | ID=MS.gene29646.t1;Parent=MS.gene29646 |
chr5.1 | exon | 64755816 | 64755960 | 64755816 | ID=MS.gene29646.t1.exon1;Parent=MS.gene29646.t1 |
chr5.1 | CDS | 64755816 | 64755960 | 64755816 | ID=cds.MS.gene29646.t1;Parent=MS.gene29646.t1 |
chr5.1 | exon | 64755498 | 64755685 | 64755498 | ID=MS.gene29646.t1.exon2;Parent=MS.gene29646.t1 |
chr5.1 | CDS | 64755498 | 64755685 | 64755498 | ID=cds.MS.gene29646.t1;Parent=MS.gene29646.t1 |
chr5.1 | exon | 64755002 | 64755388 | 64755002 | ID=MS.gene29646.t1.exon3;Parent=MS.gene29646.t1 |
chr5.1 | CDS | 64755002 | 64755388 | 64755002 | ID=cds.MS.gene29646.t1;Parent=MS.gene29646.t1 |
Gene Sequence |
Protein sequence |