AlfalfaGEDB | MS.gene29647

M. sativa cultivar XinJiangDaYe / MS.gene29647

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13540.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29647.t1	XP_003616637.2	96.5	807	26	1	1	807	1	805	0.00E+00	1505.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29647.t1	Q9LY50	51.4	833	360	16	1	807	1	814	1.5e-187	657.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29647.t1	G7KH13	96.5	807	26	1	1	807	1	805	0.0e+00	1505.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29647.t1	MTR_5g082630	97.522	807	18	1	1	807	1	805	0.0	1626
MS.gene29647.t1	MTR_3g070800	67.746	803	226	12	1	797	1	776	0.0	1031
MS.gene29647.t1	MTR_3g464080	52.559	801	333	22	14	790	10	787	0.0	755
MS.gene29647.t1	MTR_4g035180	38.585	749	392	21	64	789	23	726	1.04e-135	421
MS.gene29647.t1	MTR_4g067230	33.534	829	450	34	14	788	17	798	1.67e-101	335
MS.gene29647.t1	MTR_2g098910	31.684	849	454	34	6	788	13	801	2.32e-100	332
MS.gene29647.t1	MTR_1g064560	30.244	820	432	30	26	784	20	760	6.21e-84	284
MS.gene29647.t1	MTR_3g086120	41.329	346	166	10	458	785	555	881	1.45e-68	244
MS.gene29647.t1	MTR_3g062590	41.566	332	165	8	480	803	605	915	7.54e-66	237
MS.gene29647.t1	MTR_8g070910	42.904	303	150	5	485	783	264	547	4.92e-65	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29647.t1	AT3G55950	57.863	833	306	19	1	807	1	814	0.0	824
MS.gene29647.t1	AT5G47850	35.646	735	379	23	73	789	78	736	8.54e-128	400
MS.gene29647.t1	AT3G59420	43.052	367	191	6	442	806	461	811	5.22e-83	284
MS.gene29647.t1	AT3G59420	26.611	357	201	19	16	337	17	347	8.40e-21	98.6
MS.gene29647.t1	AT2G39180	29.878	820	430	34	31	783	26	767	3.71e-74	258
MS.gene29647.t1	AT1G06840	41.593	339	169	9	460	792	589	904	7.96e-65	234
MS.gene29647.t1	AT1G67720	42.222	315	157	8	485	795	596	889	8.09e-65	234
MS.gene29647.t1	AT5G28680	36.453	406	220	11	402	799	436	811	1.48e-63	229
MS.gene29647.t1	AT5G28680	36.453	406	220	11	402	799	436	811	1.48e-63	229
MS.gene29647.t1	AT3G26940	39.145	304	175	4	481	783	58	352	2.83e-63	219

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Find 180 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGTTGGCCTCAAA+TGG	0.421524	5.1:-64766099	MS.gene29647:CDS
AAACTCTTTCTCTATCTTCT+CGG	0.385339	5.1:+64766589	None:intergenic
AAAGTTGAACCATTCCAACC+AGG	0.673516	5.1:+64766239	None:intergenic
AACATCATTTGCTACCGCCA+TGG	0.574967	5.1:-64767013	MS.gene29647:CDS
AACCATTGTAGCACAAACAT+GGG	0.612011	5.1:+64766793	None:intergenic
AAGAGTGATGTTTACGGTCT+AGG	0.406804	5.1:-64765111	MS.gene29647:CDS
AAGATTGGTGCTGGAAGCTA+TGG	0.541279	5.1:-64765672	MS.gene29647:CDS
AAGCACTTGGTTAGACTAGT+CGG	0.552013	5.1:-64765510	MS.gene29647:CDS
AAGTGATATTGTGGCTAATT+TGG	0.145094	5.1:-64764851	MS.gene29647:CDS
AATGAGGATCAAAGTCGCTT+TGG	0.453123	5.1:-64765364	MS.gene29647:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCTTTCTCTATCTTCT+CGG	+	chr5.1:64765363-64765382	None:intergenic	30.0%
AAGTGATATTGTGGCTAATT+TGG	-	chr5.1:64767098-64767117	MS.gene29647:CDS	30.0%
ACCAACAATAAGTGATATTG+TGG	-	chr5.1:64767089-64767108	MS.gene29647:CDS	30.0%
ATGTCTCGATGAATTATTGA+TGG	+	chr5.1:64766652-64766671	None:intergenic	30.0%
CAATCTCAGTATTTATGTTC+TGG	-	chr5.1:64765806-64765825	MS.gene29647:CDS	30.0%
GAACATAAATACTGAGATTG+AGG	+	chr5.1:64765806-64765825	None:intergenic	30.0%
TACATCGATCCTGAATATTA+TGG	-	chr5.1:64766796-64766815	MS.gene29647:CDS	30.0%
TCTTGTTGGAGAATGAATAA+AGG	-	chr5.1:64765194-64765213	MS.gene29647:CDS	30.0%
TGAATTCAATCCACAAACAT+GGG	+	chr5.1:64765423-64765442	None:intergenic	30.0%
TGTCAATCCACAAGTAAAAT+TGG	+	chr5.1:64765660-64765679	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	64764774	64767197	64764774	ID=MS.gene29647
chr5.1	mRNA	64764774	64767197	64764774	ID=MS.gene29647.t1;Parent=MS.gene29647
chr5.1	exon	64764774	64767197	64764774	ID=MS.gene29647.t1.exon1;Parent=MS.gene29647.t1
chr5.1	CDS	64764774	64767197	64764774	ID=cds.MS.gene29647.t1;Parent=MS.gene29647.t1

Gene Sequence

>MS.gene29647

ATGAAGAAAATTTCACTCTCTTCCGTCATCTTTTCCACTTTCACCGTTGTCTTTCTCCTCTCATCACTCCCCTTCACCAATGCTCTCGGCTCTGGCACCACCCTCGCCGTCGTCGACTCCACCGCCACCGTCTGCGGTATCATATCATCACAAAAAACTCATAACATCATTTGCTACCGCCATGGCCGTCTCATCACCGCCGTGCCGGAAGTCTCATTCTCTTCAATCTCAGGTGGAAGAAACTACTTCTGTGGTATTAGGTCCGGTAACTACAGTATCCTCTGTTGGGACACTGTTTCATCAAACACAACGTTTGAAACAAGAAGACTTTACAACAATAACAATGGCACTGTTCTGTACGAGAATCTTGCTGTTGGTGATTCCCATGTTTGTGCTACAATGGTTAATGTTGGAAACGTTTCTTGTTGGAGAATGAATAAAGGTTTTGTTTTGCCATCTGGGTTTGATCAATTTTCGTCAATAGCTTCTGGGTTTGGATTCTCTTGTGGAATTTTGAAGAAAAATGATTCTGGGTCGGTTCGCTGTTTCGGTAATGTTAATGTGAATGAGAATGAATCTTCCATTGCCGAGAAGATAGAGAAAGAGTTTGTGAATGTTTCTATGGCGAGTCTTGTAGCTGGTGAGTCCCATGTTTGTGGATTGAATTCAAAAGGGTTTTTGGTTTGTAAGGGAAGTAATAATTTTGGTCAAATTAATGTTCCTAATCAAGTTGAGTCTTTGGAATATTCTGATTTAGCTTTAGGAGCTGAACATAGTTGTGCTATTAGAAGATCTAATGGTTCTGTTGTTTGTTGGGGTGGTAATGGATTGTTTGATGTTAATGTTACAAAAAATGTTTCTTTTGAGGTTATTGTTTCTGCTTCCAATTTTACTTGTGGATTGACAACAAACAATTTTTCTGTTGTTTGTTGGGGTCCTGGTTGGAATGGTTCAACTTTTCAGCTTCCTTTGCCACCTATTCTACCAGGGATTTGTGTTCAATCTTCTTGTAGTGAATGTGGTATGTATCCTCAATCTCAGTATTTATGTTCTGGATTTGGTAATATTTGTAAGCCAAAACCTTGTTGGCCTCAAATGGATGTTCCGGTGCCGTCGCAGATAGCAACACCGCCACAGCCAGGGCTGCCGTGTTCTAGGTCAAAGACATTGACAAAGGGGTTATTGGTGTTTGCTATTGTTGGAGTAATTGGAGCTGTTGCTGGTTTGTGTACTGTGGTTTATTGTTTGTGGAGTGGTGTGTGTTTTGGTAAGAAGAAAGTTCACAATTCAGTTCAACCAACAATCACTAGAGGTGGAAGTCTTAATTGTGGTGCATTTTCGAATTATAGTCCAACTTCGAGATCATCCACAATTAGGCGACAAGGTTCGCGGATAATGAGGCGTCAGAGAAGTGGAACATCGTCAACAAAACATCCAGATAGGTCAGAAGAATTCACCCTTGCTGAGCTTGTTGCAGCCACAAACAATTTCTCACTTGAGAACAAGATTGGTGCTGGAAGCTATGGTGTTGTTTACAAAGGTAAACTCGCAGATGGCCGCGAGGTGGCAATCAAAAGGGGTGAAACTAGTACTATGATGAAAGTTTTTCAAGAGAAAGAGAGCGCATTTGAGTCCGAATTAGCCTTTTTGTCGCGCCTACATCACAAGCACTTGGTTAGACTAGTCGGTTTTTGCGACGAGAAAGATGAAAGGCTTTTGGTTTACGAGTTCATGAAGAATGGTGCATTGTATGATCATTTGCACGACAAAAACAACGTTGACAAGAATAGTAGTTTATTGAATTCTTGGAAAATGAGGATCAAAGTCGCTTTGGATGCATCACGTGGAATTGAGTATCTCCATAATTACGCGGTTCCATCAATAATTCATCGAGACATTAAGTCTTCAAACATTCTCATTGACTCGGATTGGACGGCTAGAGTGTCTGATTTCGGATTGTCAATGTTGAGTCCGGATTCGGATCATGATTACAGACCAACGAAAGCGGCCGGAACAGTTGGATACATCGATCCTGAATATTATGGTCTAAATGTATTAACAGCAAAGAGTGATGTTTACGGTCTAGGAGTAGTTTTACTTGAGCTATTGACAGGAAAAAGAGCTATATTCAAGAATGATGAAAATGGAGGAACACCAATTAGTATAGTAGATTTTGCAGTGCCTATAATTATGAAAGGAGAATTGATGAAAATTTTGGATCAAAGGGTTGAACCACCAGAGATGAATGAAACAGAAGCAGTGGAGCTTGTGTCATATACTGCAATGCATTGTGTGCATTTGGAAGGAAAAGATAGACCAACAATAAGTGATATTGTGGCTAATTTGGAACGTGCTTTCACTCTTTGTGATAGTAGTAGTCATGGTAGCATTTCTAGTGCTACAATCTCTATTGGATCTGACTGA

Protein sequence

>MS.gene29647.t1

MKKISLSSVIFSTFTVVFLLSSLPFTNALGSGTTLAVVDSTATVCGIISSQKTHNIICYRHGRLITAVPEVSFSSISGGRNYFCGIRSGNYSILCWDTVSSNTTFETRRLYNNNNGTVLYENLAVGDSHVCATMVNVGNVSCWRMNKGFVLPSGFDQFSSIASGFGFSCGILKKNDSGSVRCFGNVNVNENESSIAEKIEKEFVNVSMASLVAGESHVCGLNSKGFLVCKGSNNFGQINVPNQVESLEYSDLALGAEHSCAIRRSNGSVVCWGGNGLFDVNVTKNVSFEVIVSASNFTCGLTTNNFSVVCWGPGWNGSTFQLPLPPILPGICVQSSCSECGMYPQSQYLCSGFGNICKPKPCWPQMDVPVPSQIATPPQPGLPCSRSKTLTKGLLVFAIVGVIGAVAGLCTVVYCLWSGVCFGKKKVHNSVQPTITRGGSLNCGAFSNYSPTSRSSTIRRQGSRIMRRQRSGTSSTKHPDRSEEFTLAELVAATNNFSLENKIGAGSYGVVYKGKLADGREVAIKRGETSTMMKVFQEKESAFESELAFLSRLHHKHLVRLVGFCDEKDERLLVYEFMKNGALYDHLHDKNNVDKNSSLLNSWKMRIKVALDASRGIEYLHNYAVPSIIHRDIKSSNILIDSDWTARVSDFGLSMLSPDSDHDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNDENGGTPISIVDFAVPIIMKGELMKILDQRVEPPEMNETEAVELVSYTAMHCVHLEGKDRPTISDIVANLERAFTLCDSSSHGSISSATISIGSD