AlfalfaGEDB | MS.gene29649

M. sativa cultivar XinJiangDaYe / MS.gene29649

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29649.t1	XP_013454255.1	89.6	713	19	3	1	659	1	712	0.00E+00	1253

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29649.t1	Q09690	35.7	325	178	5	353	653	679	996	6.5e-45	183.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29649.t1	A0A072UFT7	89.6	713	19	3	1	659	1	712	0.0e+00	1253.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29649.t1	MTR_5g082700	89.621	713	19	3	1	659	1	712	0.0	1301
MS.gene29649.t1	MTR_5g082700	89.127	653	16	3	1	599	1	652	0.0	1178
MS.gene29649.t1	MTR_5g082700	88.284	606	16	3	1	552	1	605	0.0	1080
MS.gene29649.t1	MTR_6g074905	61.631	331	103	2	334	659	860	1171	1.47e-139	437
MS.gene29649.t1	MTR_0349s0030	67.932	237	76	0	423	659	55	291	9.38e-117	351
MS.gene29649.t1	MTR_6g074870	53.312	317	107	5	293	604	67	347	4.59e-104	320
MS.gene29649.t1	MTR_6g074640	38.050	318	96	9	352	659	11	237	1.21e-51	179
MS.gene29649.t1	MTR_6g074750	79.000	100	21	0	457	556	18	117	2.76e-51	173
MS.gene29649.t1	MTR_8g069620	54.430	158	50	1	342	477	14	171	2.11e-45	160
MS.gene29649.t1	MTR_8g070930	32.578	353	160	9	371	653	138	482	6.92e-42	163

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29649.t1	AT2G40120	72.781	338	70	1	338	653	227	564	2.20e-179	522
MS.gene29649.t1	AT2G40120	41.989	181	59	7	3	155	1	163	5.85e-21	97.8
MS.gene29649.t1	AT1G73460	61.518	382	122	3	303	659	786	1167	9.98e-161	493
MS.gene29649.t1	AT1G73460	61.518	382	122	3	303	659	786	1167	9.98e-161	493
MS.gene29649.t1	AT1G73450	64.943	348	100	1	334	659	803	1150	1.16e-160	492
MS.gene29649.t1	AT3G17750	64.943	348	100	1	334	659	789	1136	3.93e-156	480
MS.gene29649.t1	AT5G35980	33.143	350	162	8	371	653	121	465	1.00e-42	166
MS.gene29649.t1	AT5G35980	33.143	350	162	8	371	653	86	430	1.03e-42	166
MS.gene29649.t1	AT5G35980	33.143	350	162	8	371	653	121	465	1.12e-42	165
MS.gene29649.t1	AT3G25840	32.537	335	165	9	367	653	350	671	5.58e-40	156

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Find 115 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGTCCAGGTTCAGG+AGG	0.632418	5.1:-64808771	MS.gene29649:CDS
AAAGAATTTCTCGTAGTCAA+AGG	0.560157	5.1:+64809965	None:intergenic
AAATCCGGTCCATCAAAATC+AGG	0.474499	5.1:+64809047	None:intergenic
AAATTCAACCAAGAATCTGG+TGG	0.683493	5.1:-64807782	MS.gene29649:CDS
AACTTTGATGGTTAAGTCAT+AGG	0.346766	5.1:+64808599	None:intergenic
AAGAAGGCCTACTGCAAGAC+AGG	0.488234	5.1:-64806571	MS.gene29649:CDS
AAGATTGATATATGGTCACT+CGG	0.613482	5.1:-64807373	MS.gene29649:CDS
AATCGCGTGCCGTGCCGAAT+TGG	0.291398	5.1:+64809141	None:intergenic
AATGAGCGGAGTTTGACCGG+AGG	0.740584	5.1:+64809921	None:intergenic
AATTCCAGAAGAGACATCAT+TGG	0.515774	5.1:-64806664	MS.gene29649:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATTTCTCGTAGTCAA+AGG	+	chr5.1:64806648-64806667	None:intergenic	30.0%
AAGATTGATATATGGTCACT+CGG	-	chr5.1:64809237-64809256	MS.gene29649:intron	30.0%
AGAAGAAACAGAGTTTGATT+TGG	+	chr5.1:64806756-64806775	None:intergenic	30.0%
ATCTGTTTCAACAACTTTGA+TGG	+	chr5.1:64808026-64808045	None:intergenic	30.0%
CAATGAATAAATGTTCCTGA+TGG	+	chr5.1:64808770-64808789	None:intergenic	30.0%
CCTGTAGATTCAAAAATAGA+TGG	+	chr5.1:64808475-64808494	None:intergenic	30.0%
CTGAAATAGAGAAATTGTGA+AGG	-	chr5.1:64808962-64808981	MS.gene29649:CDS	30.0%
CTTAATATTCTCGATAATGC+TGG	-	chr5.1:64808267-64808286	MS.gene29649:intron	30.0%
GAATTGTACATAGAAAGAAC+AGG	-	chr5.1:64808203-64808222	MS.gene29649:intron	30.0%
GATGAGGAATTAATTCCATA+TGG	+	chr5.1:64807404-64807423	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	64806527	64810105	64806527	ID=MS.gene29649
chr5.1	mRNA	64806527	64810105	64806527	ID=MS.gene29649.t1;Parent=MS.gene29649
chr5.1	exon	64809889	64810105	64809889	ID=MS.gene29649.t1.exon1;Parent=MS.gene29649.t1
chr5.1	CDS	64809889	64810105	64809889	ID=cds.MS.gene29649.t1;Parent=MS.gene29649.t1
chr5.1	exon	64808408	64809242	64808408	ID=MS.gene29649.t1.exon2;Parent=MS.gene29649.t1
chr5.1	CDS	64808408	64809242	64808408	ID=cds.MS.gene29649.t1;Parent=MS.gene29649.t1
chr5.1	exon	64807925	64808138	64807925	ID=MS.gene29649.t1.exon3;Parent=MS.gene29649.t1
chr5.1	CDS	64807925	64808138	64807925	ID=cds.MS.gene29649.t1;Parent=MS.gene29649.t1
chr5.1	exon	64807751	64807858	64807751	ID=MS.gene29649.t1.exon4;Parent=MS.gene29649.t1
chr5.1	CDS	64807751	64807858	64807751	ID=cds.MS.gene29649.t1;Parent=MS.gene29649.t1
chr5.1	exon	64807342	64807620	64807342	ID=MS.gene29649.t1.exon5;Parent=MS.gene29649.t1
chr5.1	CDS	64807342	64807620	64807342	ID=cds.MS.gene29649.t1;Parent=MS.gene29649.t1
chr5.1	exon	64807061	64807204	64807061	ID=MS.gene29649.t1.exon6;Parent=MS.gene29649.t1
chr5.1	CDS	64807061	64807204	64807061	ID=cds.MS.gene29649.t1;Parent=MS.gene29649.t1
chr5.1	exon	64806527	64806709	64806527	ID=MS.gene29649.t1.exon7;Parent=MS.gene29649.t1
chr5.1	CDS	64806527	64806709	64806527	ID=cds.MS.gene29649.t1;Parent=MS.gene29649.t1

Gene Sequence

>MS.gene29649

ATGGCTATGTCGAACAGTGTCGAAGCTGTGTTCGAATTTCTAAGAAAAAATGGATTATCAGAAGCAGAATCAGCTCTAAGACAAGACATCATTGACAAGCACAACAATGATCTTGCTTCCTTTGACTACGAGAAATTCTTTTTTCCGATGGTTCCTCCACCTCCTCCGGTCAAACTCCGCTCATTTACACGGCCGTCGGAGTTGACTTCCGGCGACGGTCAATTCTCCAAATCAAACTCTGTTTCTTCTGGAGAACAGTTTGTTAGCATCGGTTCTTCTACTTCTCCTTCTCGTTCTCGTGTTTCTTCTTCAGGTTCTCTTTTCAATAATCGATTATTTATTGATTATGCTTAATTACTTCTTAATGATCGATTATCACTATGAGTTTCTAGTATTAGTGATTATGCTCTGTTTTCAACGCTGTTTTGCTTTTTGGTCAAAAACGAAGAAAGAATAGAGAATTAGTAATTATGATCGTTAATTCTGATTTTCTTGATTAATTAATATTTAGTTAGATTTTTTAAGAAGTGTTCTAAATTCTAATTCTAGTTTCTGCAATTTCTACATTTGGATCGCATAATTGATTAACCAAATTTGAATTTGTGTATTTGATTTAAGTTAATTTCAATTGCATGTTGTGTTTTAGGATTTAAAATTATTCATAGTTAATGTTTATATCTTATATATGATCTGCATTTTTATTTTTATTTTATTGAATTTATGTTTCCAAATTTGGATTATATTAAGCTTAGTTATTACCAAGAGTATTTTATATTTTTTTAATGAATTCAATTAATGTTGAAAATTTGTAATGCATAAAAATAGGAAATTATATAACCTAGATTTATTTATTTTTGTTGCAGAATTTATCAATCCATATGGAATTAATTCCTCATCTCAGACTCAGAATGATTCTGAATCTTCTTCATCTGATAGATTGTCCCAATTCGGCACGGCACGCGATTATCACGAATTCGATATGCAACATGAACCGTATTGGTATAATGAAAACGATGACGATGATGATTTCATGACTCCTGATTTTGATGGACCGGATTTCTTTGGATGTCAAAGTGAAGATAAGTTCATCTTGAATTCAGAAACAGAAAATCAACAAGATGATTCTCGTGATCTTCGTTACGACTTTGAAGAAATTCAGTTAGAGGAAGATGAAGGTTACATAGACAAGTCAATGGAGCAATGCCTTTGTAATCATTCATCTGGAGGTGATGAAAATGCGACTTATTCAAAAGATTATTGTCACGGGGCCGAGAAAGACACTGTTGCGCATAATTGTGAACTTCCATTTTGCAAAAGCAGTCCAGGTTCAGGAGGTTCTTGTAGCGAGGATCCTTTGAACTTTAGCTACCTTAATTTGAAGGAAATTAAGCTGAATCTGAATGATTTTCATATGAAGGATATTAATTCGTTTGAGTCTGTTCCTGTGCTTACCATGAAGCATAGTTCAGATTGCTACAAGGATCCCTATGACTTAACCATCAAAGTTGTTGAAACAGATCTACCAAATGGGATCGAAAGCTATGGAGTAAGAGATGACCGAGATTTGAGTGAAGAACTCCATGTTCCGGAGGTTGCCGCAGATGGAGAGGATAATAATACTGATGATGACCTCTTAAAATACATTCAAGATGATGAATATGAAGTATTTGAGCTAAGAATTGTACATAGAAAGAACAGGTTTGCTTGTTAATGATCTTGTGTCGTGAACTTTCATTTCTACTTAATATTCTCGATAATGCTGGTGGATAAACTGATTTTGAATGTGTAGGAGACTAGTTGTTGGTAAAATTTGAAATCAAATGCTTTTACTTTTCTTATTTTTAGCACTTCAACTTTTTTGTTTTTGTCATTAATTTAGTTCACCATGATTTTGACCTAACATTATTCACTTTTTCTCTTTAAGTATTCTGACAATAATTTTCTACCATCTATTTTTGAATCTACAGGACTGGATTTGAAGAAAACAAGGAAGTTCCAATTGTGCTCAACTCGGTCATGGCTGGAAGGTACTATGTGACAGAATATCTCGGTTCAGCTGCATTCAGTAGGGTTGTTCAAGCCCATGATCTTCAGATGGGAATCGATGTTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTGATCAAAGCCTAGATGAAATCAAGCTTCTTAAACTTGTCAATAAGCATGACCCGGGAGATAAACACCACATACTGCGTCTTTATGACTATTTCTACCATCAGGAACATTTATTCATTGTGACCGAACTTCTGCGTGCAAACTTATATGAATTTCAGAAATTCAACCAAGAATCTGGTGGTGAAGCATATTTTACATTAAAGAGATTGCAGGTTTGTTCAACTAGACTAATTAACTTTTGCACCTATCCGACGTCGTTGCTTATCAATTTGAATGGATTTTTTTTTTGGGTCTGAAATAGAGAAATTGTGAAGGCATTGTTGTTGTTATCCTTCTTTGCAGCTCATTACTCGACAATGTTTGGAGGCATTGCAATATTTGCATAACTTGGGAATTGTTCACTGCGACCTGAAGCCTGAAAACGTTCTAATCAAAAGTTACAAAAAATGTGAAATAAAGATTATTGATCTTGGAAGCAGTTGCTTTAAAACAGACAATCTGTGTCTATATGTACAATCTCGGTCTTATAGAGCTCCTGAAGTGATGTTAGGCCTTCAATATGATGAAAAGATTGATATATGGTCACTCGGCTGTATTTTGGCTGAGCTATGCTCCGGTGAAGTACGTTCTAATCTGCATTTCTTATGATATTAATGAAATACATTTTTCTATGGCTCTTACAAGAACATGGTATTTTGATTTTCTTTCAAAGATTTCTTTTATATATTTGTTGATTCAGAGTTCTTTTCCGGCTTCAGGTGCTCTTTCCAAATGATGCTGTTGTGATGATTCTTGCACGCATGATTGGAATGTTTGGTCCTTTTGATATGGAGATGTTGGTGAAAGGGCAGGAAACACACAAGTACTTCACCAAAGAATATGACATTTACTTCATAAACGAGGTTTGTTTCCTTTTAGCTGTTCCTTTTTTAACATATTTCGTTTGTTTTTATTCATCAATCCTAGGTTGAAATACTTTTTTCATGTTGCTGCCACCCGGGTCGAGTTGGATTATGCCTGAAAAAACTTTTTACTCGTTAAACAATGTCTCAAATTCGAGTCTCGTGAATGAAAAAAATAGGCCACTCCACTCAACTTGGATTATACTGAGGATCTAGACCAAAAAAGAAAAGTATATATTAGTGTTGGTTATTCGCAATAAAGAAAATAAATGACCTTAGATTTATCAGAAAAATCAAGCCATCCATTCAAATTACATTTTTTCCCCAACCAATCTTTAATAATGTACACAGGAGACAGATCAACTAGAGTACATAATTCCAGAAGAGACATCATTGGAGCACCACCTACAGGTCACTGATACTATGTTTATTGACTTTGTCAGTTACTTGCTTAACGTCAACCCCAAAAGAAGGCCTACTGCAAGACAGGCACTAAAACATCCATGGCTTTCCCATGTATACAAGTCCATGTAA

Protein sequence

>MS.gene29649.t1

MAMSNSVEAVFEFLRKNGLSEAESALRQDIIDKHNNDLASFDYEKFFFPMVPPPPPVKLRSFTRPSELTSGDEFINPYGINSSSQTQNDSESSSSDRLSQFGTARDYHEFDMQHEPYWYNENDDDDDFMTPDFDGPDFFGCQSEDKFILNSETENQQDDSRDLRYDFEEIQLEEDEGYIDKSMEQCLCNHSSGGDENATYSKDYCHGAEKDTVAHNCELPFCKSSPGSGGSCSEDPLNFSYLNLKEIKLNLNDFHMKDINSFESVPVLTMKHSSDCYKDPYDLTIKVVETDLPNGIESYGVRDDRDLSEELHVPEVAADGEDNNTDDDLLKYIQDDEYEVFELRIVHRKNRTGFEENKEVPIVLNSVMAGRYYVTEYLGSAAFSRVVQAHDLQMGIDVCLKIIKNDKDFFDQSLDEIKLLKLEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQLITRQCLEALQYLHNLGIVHCDLKPENVLIKSYKKCEIKIIDLGSSCFKTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARMIGMFGPFDMEMLVKGQETHKYFTKEYDIYFINEETDQLEYIIPEETSLEHHLQVTDTMFIDFVSYLLNVNPKRRPTARQALKHPWLSHVYKSM