AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29924

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29924.t1 MTR_8g464430 61.682 107 28 3 1 95 1 106 1.05e-30 106
MS.gene29924.t1 MTR_4g007750 55.056 89 38 1 6 94 186 272 7.60e-26 97.8
MS.gene29924.t1 MTR_4g094430 53.333 90 41 1 6 95 169 257 1.52e-25 96.7
MS.gene29924.t1 MTR_1g075610 50.549 91 43 1 6 96 191 279 5.68e-25 95.9
MS.gene29924.t1 MTR_2g032060 52.222 90 42 1 6 95 169 257 3.25e-24 93.2
MS.gene29924.t1 MTR_3g085650 60.606 66 26 0 6 71 581 646 7.67e-23 91.7
MS.gene29924.t1 MTR_3g085650 60.606 66 26 0 6 71 581 646 7.71e-23 91.7
MS.gene29924.t1 MTR_3g085650 60.606 66 26 0 6 71 581 646 7.71e-23 91.7
MS.gene29924.t1 MTR_3g085650 60.606 66 26 0 6 71 581 646 7.74e-23 91.7
MS.gene29924.t1 MTR_8g080190 60.606 66 26 0 6 71 550 615 1.66e-22 90.9
MS.gene29924.t1 MTR_8g080190 60.606 66 26 0 6 71 550 615 1.67e-22 90.9
MS.gene29924.t1 MTR_4g103810 56.061 66 29 0 6 71 275 340 2.43e-21 87.0
MS.gene29924.t1 MTR_4g103810 56.061 66 29 0 6 71 385 450 3.21e-21 87.0
MS.gene29924.t1 MTR_3g040810 58.730 63 26 0 6 68 203 265 5.94e-21 86.3
MS.gene29924.t1 MTR_3g040520 57.812 64 27 0 6 69 205 268 1.05e-20 85.5
MS.gene29924.t1 MTR_8g461270 44.444 90 49 1 6 95 217 305 2.32e-20 84.0
MS.gene29924.t1 MTR_6g087920 44.330 97 53 1 1 96 275 371 1.28e-19 82.0
MS.gene29924.t1 MTR_7g011800 53.333 60 28 0 6 65 286 345 1.29e-17 76.6
MS.gene29924.t1 MTR_6g013030 51.667 60 29 0 6 65 276 335 2.87e-17 75.9
MS.gene29924.t1 MTR_8g103240 43.011 93 52 1 1 92 288 380 3.78e-17 75.5
MS.gene29924.t1 MTR_3g096960 45.946 74 32 1 6 71 196 269 7.57e-17 74.7
MS.gene29924.t1 MTR_1g098300 50.000 60 30 0 6 65 292 351 1.83e-16 73.6
MS.gene29924.t1 MTR_4g061320 55.172 58 26 0 6 63 206 263 2.02e-16 73.2
MS.gene29924.t1 MTR_5g008860 50.000 60 30 0 6 65 306 365 2.54e-16 73.2
MS.gene29924.t1 MTR_4g061330 55.172 58 26 0 6 63 10 67 3.23e-16 69.7
MS.gene29924.t1 MTR_4g109090 50.000 60 30 0 6 65 123 182 3.54e-16 72.8
MS.gene29924.t1 MTR_4g109090 50.000 60 30 0 6 65 271 330 3.63e-16 72.8
MS.gene29924.t1 MTR_4g118780 48.333 60 31 0 6 65 270 329 1.81e-15 70.5
MS.gene29924.t1 MTR_7g076030 51.724 58 28 0 6 63 307 364 1.83e-15 70.5
MS.gene29924.t1 MTR_8g099770 51.667 60 29 0 6 65 256 315 1.99e-15 70.5
MS.gene29924.t1 MTR_2g085200 50.000 60 30 0 6 65 300 359 2.52e-15 70.1
MS.gene29924.t1 MTR_2g083940 51.724 58 28 0 6 63 254 311 3.15e-15 70.1
MS.gene29924.t1 MTR_2g083940 51.724 58 28 0 6 63 200 257 3.71e-15 69.7
MS.gene29924.t1 MTR_1g084760 51.724 58 28 0 6 63 241 298 3.76e-15 69.7
MS.gene29924.t1 MTR_4g087620 48.276 58 30 0 6 63 221 278 4.21e-15 69.3
MS.gene29924.t1 MTR_7g076030 51.724 58 28 0 6 63 200 257 5.17e-15 69.3
MS.gene29924.t1 MTR_2g020210 48.333 60 31 0 6 65 268 327 8.15e-15 68.9
MS.gene29924.t1 MTR_7g110060 51.724 58 28 0 6 63 241 298 8.63e-15 68.6
MS.gene29924.t1 MTR_2g016490 51.724 58 28 0 6 63 206 263 9.13e-15 68.6
MS.gene29924.t1 MTR_2g005620 53.448 58 27 0 6 63 256 313 1.05e-14 68.6
MS.gene29924.t1 MTR_3g460950 45.763 59 32 0 6 64 199 257 1.38e-14 67.8
MS.gene29924.t1 MTR_3g060330 45.763 59 32 0 6 64 199 257 1.38e-14 67.8
MS.gene29924.t1 MTR_7g110060 51.724 58 28 0 6 63 241 298 1.79e-14 67.8
MS.gene29924.t1 MTR_3g098760 48.333 60 31 0 6 65 263 322 2.43e-14 67.4
MS.gene29924.t1 MTR_5g010030 49.123 57 29 0 6 62 207 263 3.81e-14 66.6
MS.gene29924.t1 MTR_1g086370 50.000 58 29 0 6 63 208 265 4.91e-14 66.6
MS.gene29924.t1 MTR_1g081870 45.000 60 33 0 6 65 288 347 4.97e-14 66.6
MS.gene29924.t1 MTR_8g432510 48.276 58 30 0 6 63 305 362 5.28e-14 66.6
MS.gene29924.t1 MTR_1g086370 50.000 58 29 0 6 63 241 298 5.62e-14 66.2
MS.gene29924.t1 MTR_8g098845 47.368 57 30 0 6 62 218 274 9.32e-14 65.9
MS.gene29924.t1 MTR_7g114300 43.333 60 34 0 6 65 273 332 9.79e-14 65.9
MS.gene29924.t1 MTR_7g114300 43.333 60 34 0 6 65 273 332 9.95e-14 65.5
MS.gene29924.t1 MTR_4g078290 45.000 60 33 0 6 65 295 354 1.02e-13 65.9
MS.gene29924.t1 MTR_4g078290 45.000 60 33 0 6 65 295 354 1.02e-13 65.9
MS.gene29924.t1 MTR_6g080470 37.931 87 52 1 6 92 177 261 1.17e-13 65.5
MS.gene29924.t1 MTR_2g090405 42.105 76 42 1 6 81 307 380 1.17e-13 65.5
MS.gene29924.t1 MTR_7g114300 43.333 60 34 0 6 65 273 332 1.23e-13 65.5
MS.gene29924.t1 MTR_7g114300 43.333 60 34 0 6 65 273 332 1.38e-13 65.5
MS.gene29924.t1 MTR_1g086370 50.000 58 29 0 6 63 122 179 2.52e-13 63.9
MS.gene29924.t1 MTR_8g071230 45.000 60 33 0 6 65 164 223 4.47e-13 63.9
MS.gene29924.t1 MTR_3g054080 40.984 61 36 0 6 66 179 239 5.31e-13 63.5
MS.gene29924.t1 MTR_8g092290 46.552 58 31 0 6 63 307 364 6.57e-13 63.5
MS.gene29924.t1 MTR_3g112210 48.276 58 30 0 6 63 199 256 1.29e-12 62.4
MS.gene29924.t1 MTR_7g078690 45.614 57 31 0 6 62 204 260 1.57e-12 62.0
MS.gene29924.t1 MTR_8g086000 45.614 57 31 0 6 62 199 255 2.55e-12 61.6
MS.gene29924.t1 MTR_8g086000 45.614 57 31 0 6 62 242 298 2.61e-12 61.6
MS.gene29924.t1 MTR_2g072840 53.846 65 27 2 6 68 195 258 4.34e-12 61.2
MS.gene29924.t1 MTR_8g028720 43.860 57 32 0 6 62 203 259 9.52e-12 60.1
MS.gene29924.t1 MTR_2g072840 53.846 65 27 2 6 68 195 258 9.83e-12 60.1
MS.gene29924.t1 MTR_8g012450 45.455 55 30 0 6 60 164 218 9.86e-12 60.1
MS.gene29924.t1 MTR_8g012450 45.455 55 30 0 6 60 164 218 1.14e-11 59.7
MS.gene29924.t1 MTR_4g087620 51.111 45 22 0 6 50 221 265 1.25e-11 59.3
MS.gene29924.t1 MTR_2g072840 53.846 65 27 2 6 68 105 168 1.26e-11 59.7
MS.gene29924.t1 MTR_6g079470 53.333 60 25 2 6 63 259 317 1.50e-11 59.7
MS.gene29924.t1 MTR_5g026960 35.632 87 56 0 6 92 164 250 1.52e-11 59.3
MS.gene29924.t1 MTR_8g461040 48.438 64 32 1 6 68 196 259 1.86e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29924.t1 AT2G38620 55.056 89 38 1 6 94 124 210 7.55e-27 99.4
MS.gene29924.t1 AT2G38620 55.056 89 38 1 6 94 186 272 2.07e-26 99.4
MS.gene29924.t1 AT1G76540 50.549 91 43 1 6 96 187 275 3.29e-26 99.0
MS.gene29924.t1 AT3G54180 53.933 89 39 1 6 94 184 270 1.07e-25 97.4
MS.gene29924.t1 AT1G20930 49.451 91 44 1 6 96 189 277 1.87e-25 97.1
MS.gene29924.t1 AT3G48750 50.000 90 44 1 6 95 169 257 2.18e-23 91.3
MS.gene29924.t1 AT5G63370 51.111 90 41 2 6 94 467 554 6.69e-23 92.0
MS.gene29924.t1 AT5G63370 51.111 90 41 2 6 94 467 554 6.69e-23 92.0
MS.gene29924.t1 AT5G63370 51.111 90 41 2 6 94 467 554 6.69e-23 92.0
MS.gene29924.t1 AT5G63370 51.111 90 41 2 6 94 467 554 6.69e-23 92.0
MS.gene29924.t1 AT5G63370 51.111 90 41 2 6 94 467 554 6.69e-23 92.0
MS.gene29924.t1 AT5G63370 56.164 73 32 0 6 78 467 539 1.09e-22 91.3
MS.gene29924.t1 AT5G63370 56.164 73 32 0 6 78 467 539 1.09e-22 91.3
MS.gene29924.t1 AT5G63370 51.111 90 41 2 6 94 333 420 5.02e-22 89.4
MS.gene29924.t1 AT5G63370 51.111 90 41 2 6 94 333 420 5.02e-22 89.4
MS.gene29924.t1 AT5G63370 56.164 73 32 0 6 78 333 405 6.88e-22 88.6
MS.gene29924.t1 AT1G67580 59.091 66 27 0 6 71 571 636 1.19e-21 88.2
MS.gene29924.t1 AT1G67580 59.091 66 27 0 6 71 571 636 1.19e-21 88.2
MS.gene29924.t1 AT5G10270 51.515 66 32 0 6 71 206 271 1.50e-19 82.4
MS.gene29924.t1 AT3G01085 56.667 60 26 0 6 65 281 340 2.75e-18 79.0
MS.gene29924.t1 AT3G01085 56.667 60 26 0 6 65 281 340 2.75e-18 79.0
MS.gene29924.t1 AT3G01085 56.667 60 26 0 6 65 281 340 2.75e-18 79.0
MS.gene29924.t1 AT5G64960 50.000 66 33 0 6 71 206 271 1.02e-17 77.0
MS.gene29924.t1 AT5G64960 50.000 66 33 0 6 71 153 218 1.27e-17 76.6
MS.gene29924.t1 AT2G38620 65.385 52 18 0 6 57 186 237 1.94e-17 74.7
MS.gene29924.t1 AT2G38620 65.385 52 18 0 6 57 186 237 1.94e-17 74.7
MS.gene29924.t1 AT4G28980 49.254 67 34 0 1 67 293 359 4.34e-17 75.5
MS.gene29924.t1 AT4G28980 49.254 67 34 0 1 67 293 359 4.34e-17 75.5
MS.gene29924.t1 AT4G28980 49.254 67 34 0 1 67 293 359 4.34e-17 75.5
MS.gene29924.t1 AT3G59790 53.448 58 27 0 6 63 226 283 4.84e-17 75.1
MS.gene29924.t1 AT1G33770 50.000 60 30 0 6 65 307 366 9.75e-17 74.3
MS.gene29924.t1 AT5G63610 49.275 69 27 1 6 66 201 269 1.24e-16 73.9
MS.gene29924.t1 AT1G18040 42.254 71 41 0 6 76 175 245 1.49e-16 73.6
MS.gene29924.t1 AT5G39420 50.000 60 30 0 6 65 271 330 2.11e-16 73.6
MS.gene29924.t1 AT1G73690 43.662 71 40 0 6 76 174 244 2.89e-16 72.8
MS.gene29924.t1 AT1G74330 48.333 60 31 0 6 65 289 348 6.78e-16 72.0
MS.gene29924.t1 AT1G74330 48.333 60 31 0 6 65 289 348 6.82e-16 72.0
MS.gene29924.t1 AT1G74330 48.333 60 31 0 6 65 289 348 6.82e-16 72.0
MS.gene29924.t1 AT1G57700 50.000 60 30 0 6 65 312 371 7.89e-16 71.6
MS.gene29924.t1 AT1G09600 50.000 60 30 0 6 65 329 388 1.07e-15 71.2
MS.gene29924.t1 AT1G53050 43.158 95 51 2 6 99 300 392 1.13e-15 71.2
MS.gene29924.t1 AT1G53050 43.158 95 51 2 6 99 300 392 1.13e-15 71.2
MS.gene29924.t1 AT3G45640 50.877 57 28 0 6 62 204 260 1.65e-15 70.5
MS.gene29924.t1 AT1G18670 48.333 60 31 0 6 65 298 357 1.80e-15 70.9
MS.gene29924.t1 AT1G18670 48.333 60 31 0 6 65 298 357 1.81e-15 70.9
MS.gene29924.t1 AT1G18670 48.333 60 31 0 6 65 298 357 1.81e-15 70.9
MS.gene29924.t1 AT1G07880 56.140 57 25 0 6 62 199 255 2.28e-15 70.1
MS.gene29924.t1 AT1G54610 46.667 60 32 0 6 65 284 343 3.47e-15 70.1
MS.gene29924.t1 AT1G54610 46.667 60 32 0 6 65 284 343 3.47e-15 70.1
MS.gene29924.t1 AT1G54610 46.667 60 32 0 6 65 284 343 3.47e-15 70.1
MS.gene29924.t1 AT4G11330 52.727 55 26 0 6 60 209 263 4.84e-15 69.3
MS.gene29924.t1 AT4G18710 51.724 58 28 0 6 63 206 263 5.90e-15 68.9
MS.gene29924.t1 AT1G57870 53.448 58 27 0 6 63 248 305 8.31e-15 68.9
MS.gene29924.t1 AT5G26751 51.724 58 28 0 6 63 235 292 8.72e-15 68.6
MS.gene29924.t1 AT3G05840 51.724 58 28 0 6 63 239 296 8.77e-15 68.6
MS.gene29924.t1 AT3G05840 51.724 58 28 0 6 63 239 296 8.77e-15 68.6
MS.gene29924.t1 AT1G57870 53.448 58 27 0 6 63 248 305 9.07e-15 68.6
MS.gene29924.t1 AT1G57870 53.448 58 27 0 6 63 248 305 9.07e-15 68.6
MS.gene29924.t1 AT1G57870 53.448 58 27 0 6 63 248 305 9.07e-15 68.6
MS.gene29924.t1 AT5G50860 48.333 60 31 0 6 65 280 339 9.48e-15 68.6
MS.gene29924.t1 AT5G50860 48.333 60 31 0 6 65 280 339 1.01e-14 68.6
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 249 306 1.59e-14 67.8
MS.gene29924.t1 AT5G14640 51.724 58 28 0 6 63 240 297 1.96e-14 67.8
MS.gene29924.t1 AT5G14640 51.724 58 28 0 6 63 240 297 1.96e-14 67.8
MS.gene29924.t1 AT1G71530 45.000 60 33 0 6 65 313 372 1.97e-14 67.8
MS.gene29924.t1 AT1G71530 45.000 60 33 0 6 65 313 372 4.74e-14 66.6
MS.gene29924.t1 AT1G06390 50.000 58 29 0 6 63 236 293 4.86e-14 66.6
MS.gene29924.t1 AT1G06390 50.000 58 29 0 6 63 236 293 4.86e-14 66.6
MS.gene29924.t1 AT2G30980 50.000 58 29 0 6 63 238 295 5.50e-14 66.2
MS.gene29924.t1 AT4G19110 41.975 81 45 1 6 84 164 244 5.58e-14 66.6
MS.gene29924.t1 AT5G44290 45.000 60 33 0 6 65 303 362 6.13e-14 66.2
MS.gene29924.t1 AT5G44290 45.000 60 33 0 6 65 303 362 6.13e-14 66.2
MS.gene29924.t1 AT5G44290 45.000 60 33 0 6 65 303 362 6.13e-14 66.2
MS.gene29924.t1 AT5G44290 45.000 60 33 0 6 65 303 362 6.13e-14 66.2
MS.gene29924.t1 AT5G44290 45.000 60 33 0 6 65 303 362 6.13e-14 66.2
MS.gene29924.t1 AT1G09840 51.724 58 28 0 6 63 122 179 6.46e-14 65.9
MS.gene29924.t1 AT4G19110 41.975 81 45 1 6 84 164 244 6.83e-14 66.2
MS.gene29924.t1 AT4G18710 50.000 58 29 0 6 63 200 257 6.85e-14 65.5
MS.gene29924.t1 AT4G00720 50.000 58 29 0 6 63 304 361 7.00e-14 66.2
MS.gene29924.t1 AT2G43790 48.214 56 29 0 6 61 229 284 7.30e-14 66.2
MS.gene29924.t1 AT5G44290 45.000 60 33 0 6 65 303 362 8.11e-14 65.9
MS.gene29924.t1 AT3G61160 46.552 58 31 0 6 63 268 325 8.65e-14 65.9
MS.gene29924.t1 AT3G61160 46.552 58 31 0 6 63 275 332 8.81e-14 65.9
MS.gene29924.t1 AT1G71530 45.000 60 33 0 6 65 313 372 9.16e-14 65.9
MS.gene29924.t1 AT3G61160 46.552 58 31 0 6 63 268 325 9.27e-14 65.9
MS.gene29924.t1 AT1G03740 45.000 60 33 0 6 65 379 438 9.56e-14 65.9
MS.gene29924.t1 AT1G03740 45.000 60 33 0 6 65 379 438 9.60e-14 65.9
MS.gene29924.t1 AT1G66750 40.230 87 50 1 6 92 176 260 9.62e-14 65.5
MS.gene29924.t1 AT1G01560 49.123 57 29 0 6 62 206 262 9.76e-14 65.5
MS.gene29924.t1 AT3G61160 46.552 58 31 0 6 63 275 332 9.79e-14 65.9
MS.gene29924.t1 AT3G61160 46.552 58 31 0 6 63 268 325 1.05e-13 65.5
MS.gene29924.t1 AT3G61160 46.552 58 31 0 6 63 268 325 1.26e-13 65.5
MS.gene29924.t1 AT5G44290 45.000 60 33 0 6 65 303 362 1.50e-13 65.1
MS.gene29924.t1 AT4G19110 41.975 81 45 1 6 84 108 188 1.65e-13 65.1
MS.gene29924.t1 AT1G01560 49.123 57 29 0 6 62 206 262 1.80e-13 65.1
MS.gene29924.t1 AT5G45430 46.667 60 32 0 6 65 164 223 2.18e-13 64.7
MS.gene29924.t1 AT5G45430 46.667 60 32 0 6 65 164 223 2.43e-13 64.7
MS.gene29924.t1 AT3G05050 44.444 63 35 0 6 68 304 366 2.80e-13 64.3
MS.gene29924.t1 AT3G05050 44.444 63 35 0 6 68 304 366 2.80e-13 64.3
MS.gene29924.t1 AT3G05050 44.444 63 35 0 6 68 304 366 2.80e-13 64.3
MS.gene29924.t1 AT4G10010 40.000 60 36 0 6 65 142 201 3.77e-13 63.9
MS.gene29924.t1 AT4G10010 40.000 60 36 0 6 65 322 381 4.17e-13 63.9
MS.gene29924.t1 AT1G10210 48.276 58 30 0 6 63 199 256 7.49e-13 63.2
MS.gene29924.t1 AT1G10210 48.276 58 30 0 6 63 199 256 7.49e-13 63.2
MS.gene29924.t1 AT1G10210 48.276 58 30 0 6 63 199 256 7.49e-13 63.2
MS.gene29924.t1 AT4G01370 47.368 57 30 0 6 62 209 265 1.20e-12 62.8
MS.gene29924.t1 AT1G07880 58.333 48 20 0 6 53 199 246 1.42e-12 61.6
MS.gene29924.t1 AT4G22940 40.000 60 36 0 6 65 270 329 1.85e-12 62.0
MS.gene29924.t1 AT1G59580 46.552 58 31 0 6 63 199 256 2.40e-12 61.6
MS.gene29924.t1 AT1G59580 46.552 58 31 0 6 63 199 256 2.40e-12 61.6
MS.gene29924.t1 AT4G22940 40.000 60 36 0 6 65 270 329 2.44e-12 61.6
MS.gene29924.t1 AT2G46070 47.273 55 29 0 6 60 207 261 3.20e-12 61.2
MS.gene29924.t1 AT2G46070 47.273 55 29 0 6 60 207 261 3.54e-12 61.2
MS.gene29924.t1 AT2G46070 47.273 55 29 0 6 60 241 295 3.65e-12 61.2
MS.gene29924.t1 AT4G13020 42.857 70 40 0 6 75 164 233 6.15e-12 60.5
MS.gene29924.t1 AT3G14720 52.308 65 28 2 6 68 195 258 6.49e-12 60.5
MS.gene29924.t1 AT3G14720 52.308 65 28 2 6 68 195 258 6.49e-12 60.5
MS.gene29924.t1 AT4G13020 42.857 70 40 0 6 75 172 241 6.67e-12 60.5
MS.gene29924.t1 AT4G13020 42.857 70 40 0 6 75 172 241 6.67e-12 60.5
MS.gene29924.t1 AT4G13020 42.857 70 40 0 6 75 173 242 6.74e-12 60.5
MS.gene29924.t1 AT4G13020 42.857 70 40 0 6 75 164 233 6.88e-12 60.5
MS.gene29924.t1 AT4G13020 42.857 70 40 0 6 75 164 233 7.66e-12 60.5
MS.gene29924.t1 AT4G13020 42.857 70 40 0 6 75 164 233 7.68e-12 60.5
MS.gene29924.t1 AT4G13020 42.857 70 40 0 6 75 173 242 8.30e-12 60.1
MS.gene29924.t1 AT2G01450 53.448 58 24 2 6 61 186 242 9.59e-12 60.1
MS.gene29924.t1 AT2G01450 53.448 58 24 2 6 61 186 242 9.59e-12 60.1
MS.gene29924.t1 AT2G01450 53.448 58 24 2 6 61 186 242 9.59e-12 60.1
MS.gene29924.t1 AT2G01450 53.448 58 24 2 6 61 186 242 9.59e-12 60.1
MS.gene29924.t1 AT3G14720 52.308 65 28 2 6 68 195 258 1.36e-11 59.7
MS.gene29924.t1 AT1G53510 50.769 65 29 2 6 68 195 258 1.46e-11 59.7
MS.gene29924.t1 AT3G18040 53.333 60 25 2 6 63 302 360 1.54e-11 59.7
MS.gene29924.t1 AT3G18040 53.333 60 25 2 6 63 193 251 1.54e-11 59.7
MS.gene29924.t1 AT3G18040 53.333 60 25 2 6 63 302 360 1.54e-11 59.7
MS.gene29924.t1 AT3G18040 53.333 60 25 2 6 63 188 246 1.58e-11 59.3
MS.gene29924.t1 AT2G18170 45.614 57 31 0 6 62 199 255 1.67e-11 59.3
MS.gene29924.t1 AT4G36450 46.296 54 29 0 6 59 196 249 3.49e-11 58.5
MS.gene29924.t1 AT3G18040 53.333 60 25 2 6 63 105 163 3.50e-11 58.5

Find 25 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATTGGCTGCGATATTT+TGG 0.233067 8.3:-45825058 MS.gene29924:intron
TGCAGTTGATATCTGGTCTT+TGG 0.256878 8.3:-45825141 MS.gene29924:CDS
ATCAACTGCAGTTGAGTAAT+TGG 0.289792 8.3:+45825154 None:intergenic
ATGAATACCTTTGGAACAAT+TGG 0.311260 8.3:+45824865 None:intergenic
AGATGGTCTTGATCTTCTTT+CGG 0.382199 8.3:-45824732 MS.gene29924:CDS
ACTCAACTGCAGTTGATATC+TGG 0.396574 8.3:-45825148 MS.gene29924:CDS
TAATGATGAACCGCAGATAT+TGG 0.411947 8.3:-45825072 MS.gene29924:CDS
GCATATTTGCTGAGATGCTT+AGG 0.419785 8.3:-45825115 MS.gene29924:CDS
AGGCTCGAACCTCTGTTCAT+TGG 0.422138 8.3:-45825095 MS.gene29924:CDS
GCAGTTGATATCTGGTCTTT+GGG 0.432779 8.3:-45825140 MS.gene29924:CDS
AAGACCATCTGTTCGAGCTC+AGG 0.436151 8.3:+45824745 None:intergenic
GTACGCCAACTGAAGAAATC+TGG 0.446682 8.3:-45824933 MS.gene29924:CDS
GTAGAACCCATCAAAAGTTC+AGG 0.451436 8.3:+45825176 None:intergenic
AATACCTTTGGAACAATTGG+AGG 0.500345 8.3:+45824868 None:intergenic
CCAGGCCAGATTTCTTCAGT+TGG 0.518287 8.3:+45824928 None:intergenic
AGACCATCTGTTCGAGCTCA+GGG 0.521043 8.3:+45824746 None:intergenic
AGTTCAGGTGCTTTATAGCA+CGG 0.527126 8.3:+45825191 None:intergenic
CAACCCTCCAATTGTTCCAA+AGG 0.531079 8.3:-45824872 MS.gene29924:intron
ATTCCCTGAGCTCGAACAGA+TGG 0.548425 8.3:-45824749 MS.gene29924:CDS
CCAACTGAAGAAATCTGGCC+TGG 0.559077 8.3:-45824928 MS.gene29924:CDS
GCTCAGGGAATTCTGCTGCT+AGG 0.577996 8.3:+45824761 None:intergenic
ATACCTTTGGAACAATTGGA+GGG 0.612490 8.3:+45824869 None:intergenic
TTGCATATAGAAGACACACC+AGG 0.683383 8.3:+45824910 None:intergenic
TCATCATTACCAATGAACAG+AGG 0.709071 8.3:+45825086 None:intergenic
AATATCGCAGCCAATATCTG+CGG 0.714594 8.3:+45825062 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGCTTATTTATAAA+TGG + chr8.3:45825122-45825141 None:intergenic 10.0%
!! AGAAATCATAAAAATAGTTA+TGG + chr8.3:45824913-45824932 None:intergenic 15.0%
!! CAATATTATATGCAAACTAT+TGG - chr8.3:45825134-45825153 MS.gene29924:CDS 20.0%
!! TGCTTATTTATAAATGGTAA+TGG + chr8.3:45825116-45825135 None:intergenic 20.0%
!!! TTTTATATGTAAAGCTTGCT+TGG - chr8.3:45824974-45824993 MS.gene29924:intron 25.0%
ATGTAGAACATGAATACCTT+TGG + chr8.3:45825076-45825095 None:intergenic 30.0%
! GCAAACTATTGGATTTTGTA+GGG - chr8.3:45825145-45825164 MS.gene29924:CDS 30.0%
! TGCAAACTATTGGATTTTGT+AGG - chr8.3:45825144-45825163 MS.gene29924:CDS 30.0%
!! ATGAATACCTTTGGAACAAT+TGG + chr8.3:45825067-45825086 None:intergenic 30.0%
ATCAACTGCAGTTGAGTAAT+TGG + chr8.3:45824778-45824797 None:intergenic 35.0%
TAATGATGAACCGCAGATAT+TGG - chr8.3:45824857-45824876 MS.gene29924:intron 35.0%
TCATCATTACCAATGAACAG+AGG + chr8.3:45824846-45824865 None:intergenic 35.0%
! AGATGGTCTTGATCTTCTTT+CGG - chr8.3:45825197-45825216 MS.gene29924:CDS 35.0%
!! AAAGCACCTGAACTTTTGAT+GGG - chr8.3:45824747-45824766 MS.gene29924:CDS 35.0%
!! AATACCTTTGGAACAATTGG+AGG + chr8.3:45825064-45825083 None:intergenic 35.0%
!! AGATATTGGCTGCGATATTT+TGG - chr8.3:45824871-45824890 MS.gene29924:intron 35.0%
!! ATACCTTTGGAACAATTGGA+GGG + chr8.3:45825063-45825082 None:intergenic 35.0%
!! TAAAGCACCTGAACTTTTGA+TGG - chr8.3:45824746-45824765 MS.gene29924:CDS 35.0%
AATATCGCAGCCAATATCTG+CGG + chr8.3:45824870-45824889 None:intergenic 40.0%
AGTTCAGGTGCTTTATAGCA+CGG + chr8.3:45824741-45824760 None:intergenic 40.0%
GTAGAACCCATCAAAAGTTC+AGG + chr8.3:45824756-45824775 None:intergenic 40.0%
TTGCATATAGAAGACACACC+AGG + chr8.3:45825022-45825041 None:intergenic 40.0%
! ACTCAACTGCAGTTGATATC+TGG - chr8.3:45824781-45824800 MS.gene29924:intron 40.0%
! GCAGTTGATATCTGGTCTTT+GGG - chr8.3:45824789-45824808 MS.gene29924:intron 40.0%
! GCATATTTGCTGAGATGCTT+AGG - chr8.3:45824814-45824833 MS.gene29924:intron 40.0%
! TGCAGTTGATATCTGGTCTT+TGG - chr8.3:45824788-45824807 MS.gene29924:intron 40.0%
CAACCCTCCAATTGTTCCAA+AGG - chr8.3:45825057-45825076 MS.gene29924:intron 45.0%
GTACGCCAACTGAAGAAATC+TGG - chr8.3:45824996-45825015 MS.gene29924:intron 45.0%
AAGACCATCTGTTCGAGCTC+AGG + chr8.3:45825187-45825206 None:intergenic 50.0%
AGACCATCTGTTCGAGCTCA+GGG + chr8.3:45825186-45825205 None:intergenic 50.0%
AGGCTCGAACCTCTGTTCAT+TGG - chr8.3:45824834-45824853 MS.gene29924:intron 50.0%
ATTCCCTGAGCTCGAACAGA+TGG - chr8.3:45825180-45825199 MS.gene29924:CDS 50.0%
CCAACTGAAGAAATCTGGCC+TGG - chr8.3:45825001-45825020 MS.gene29924:intron 50.0%
CCAGGCCAGATTTCTTCAGT+TGG + chr8.3:45825004-45825023 None:intergenic 50.0%
GCTCAGGGAATTCTGCTGCT+AGG + chr8.3:45825171-45825190 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 45824729 45825222 45824729 ID=MS.gene29924
chr8.3 mRNA 45824729 45825222 45824729 ID=MS.gene29924.t1;Parent=MS.gene29924
chr8.3 exon 45825059 45825222 45825059 ID=MS.gene29924.t1.exon1;Parent=MS.gene29924.t1
chr8.3 CDS 45825059 45825222 45825059 ID=cds.MS.gene29924.t1;Parent=MS.gene29924.t1
chr8.3 exon 45824873 45824963 45824873 ID=MS.gene29924.t1.exon2;Parent=MS.gene29924.t1
chr8.3 CDS 45824873 45824963 45824873 ID=cds.MS.gene29924.t1;Parent=MS.gene29924.t1
chr8.3 exon 45824729 45824785 45824729 ID=MS.gene29924.t1.exon3;Parent=MS.gene29924.t1
chr8.3 CDS 45824729 45824785 45824729 ID=cds.MS.gene29924.t1;Parent=MS.gene29924.t1
Gene Sequence

>MS.gene29924

ATGGGTAATCCGTGCTATAAAGCACCTGAACTTTTGATGGGTTCTACCAATTACTCAACTGCAGTTGATATCTGGTCTTTGGGATGCATATTTGCTGAGATGCTTAGGCTCGAACCTCTGTTCATTGGTAATGATGAACCGCAGATATTGGCTGCGATATTTTGGTAATGTTATCAAAACACCATAACTATTTTTATGATTTCTCTGTACTTATATGAAACAAATCAAATTAATGAGTTGAACATTTTTATATGTAAAGCTTGCTTGGTACGCCAACTGAAGAAATCTGGCCTGGTGTGTCTTCTATATGCAACTGCATTGAAGCATTCAACCCTCCAATTGTTCCAAAGGTATTCATGTTCTACATTTGATCAATTTTTTGTTCCATTACCATTTATAAATAAGCAATATTATATGCAAACTATTGGATTTTGTAGGGCCTAGCAGCAGAATTCCCTGAGCTCGAACAGATGGTCTTGATCTTCTTTCGGTAA
Protein sequence

>MS.gene29924.t1

MGNPCYKAPELLMGSTNYSTAVDIWSLGCIFAEMLRLEPLFIGNDEPQILAAIFCLLGTPTEEIWPGVSSICNCIEAFNPPIVPKGLAAEFPELEQMVLIFFR