Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29950.t1 | XP_024632961.1 | 84.7 | 793 | 93 | 4 | 1 | 765 | 1 | 793 | 0.00E+00 | 1337.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29950.t1 | Q9SZL8 | 26.7 | 636 | 396 | 11 | 32 | 665 | 70 | 637 | 9.0e-62 | 240.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29950.t1 | D3YBB9 | 76.7 | 774 | 160 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1186.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29950.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29950.t1 | MTR_0558s0020 | 87.162 | 296 | 37 | 1 | 1 | 295 | 1 | 296 | 0.0 | 547 |
| MS.gene29950.t1 | MTR_1g083640 | 82.746 | 284 | 33 | 1 | 1 | 268 | 1 | 284 | 6.49e-172 | 495 |
| MS.gene29950.t1 | MTR_8g446020 | 73.559 | 295 | 39 | 1 | 1 | 295 | 1 | 256 | 3.69e-152 | 444 |
| MS.gene29950.t1 | MTR_6g090505 | 69.000 | 300 | 68 | 2 | 65 | 364 | 1 | 275 | 1.05e-142 | 424 |
| MS.gene29950.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 3.29e-34 | 135 |
| MS.gene29950.t1 | MTR_6g090505 | 77.551 | 49 | 11 | 0 | 567 | 615 | 314 | 362 | 9.48e-12 | 67.8 |
| MS.gene29950.t1 | MTR_2g014100 | 81.633 | 245 | 36 | 1 | 1 | 236 | 1 | 245 | 5.71e-141 | 415 |
| MS.gene29950.t1 | MTR_0337s0040 | 71.923 | 260 | 33 | 2 | 1 | 259 | 1 | 221 | 1.64e-123 | 369 |
| MS.gene29950.t1 | MTR_3g008240 | 83.744 | 203 | 32 | 1 | 1 | 202 | 1 | 203 | 1.90e-117 | 352 |
| MS.gene29950.t1 | MTR_4g040430 | 83.168 | 202 | 30 | 1 | 1 | 202 | 1 | 198 | 7.30e-117 | 351 |
| MS.gene29950.t1 | MTR_0337s0060 | 59.177 | 316 | 29 | 4 | 447 | 759 | 21 | 239 | 3.39e-109 | 332 |
| MS.gene29950.t1 | MTR_5g071590 | 72.778 | 180 | 36 | 2 | 1 | 167 | 1 | 180 | 8.39e-89 | 277 |
| MS.gene29950.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 4.09e-87 | 272 |
| MS.gene29950.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 82 | 233 | 9 | 160 | 2.13e-86 | 270 |
| MS.gene29950.t1 | MTR_3g028680 | 81.457 | 151 | 25 | 1 | 618 | 765 | 1 | 151 | 1.13e-80 | 256 |
| MS.gene29950.t1 | MTR_2g067090 | 78.378 | 148 | 29 | 1 | 621 | 765 | 99 | 246 | 1.10e-71 | 236 |
| MS.gene29950.t1 | MTR_4g133495 | 63.536 | 181 | 40 | 2 | 576 | 753 | 88 | 245 | 5.05e-68 | 226 |
| MS.gene29950.t1 | MTR_4g133340 | 63.536 | 181 | 40 | 2 | 576 | 753 | 88 | 245 | 5.05e-68 | 226 |
| MS.gene29950.t1 | MTR_1281s0010 | 79.817 | 109 | 22 | 0 | 19 | 127 | 1 | 109 | 1.02e-55 | 186 |
| MS.gene29950.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.94e-38 | 146 |
| MS.gene29950.t1 | MTR_4g008820 | 69.000 | 100 | 30 | 1 | 1 | 99 | 125 | 224 | 6.20e-31 | 129 |
| MS.gene29950.t1 | MTR_8g046060 | 76.136 | 88 | 12 | 2 | 1 | 79 | 91 | 178 | 1.25e-30 | 120 |
| MS.gene29950.t1 | MTR_1g070355 | 27.888 | 251 | 162 | 4 | 41 | 291 | 80 | 311 | 8.32e-19 | 91.3 |
| MS.gene29950.t1 | MTR_2g067130 | 62.162 | 74 | 22 | 2 | 695 | 765 | 46 | 116 | 2.03e-18 | 83.2 |
| MS.gene29950.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 2.01e-14 | 77.0 |
| MS.gene29950.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.69e-13 | 66.6 |
| MS.gene29950.t1 | MTR_4g035820 | 22.183 | 284 | 190 | 6 | 21 | 299 | 67 | 324 | 1.75e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29950.t1 | AT4G38180 | 27.457 | 641 | 385 | 13 | 32 | 665 | 70 | 637 | 3.65e-68 | 240 |
| MS.gene29950.t1 | AT4G15090 | 24.965 | 721 | 447 | 17 | 50 | 753 | 66 | 709 | 4.96e-59 | 215 |
| MS.gene29950.t1 | AT4G15090 | 24.965 | 721 | 447 | 17 | 50 | 753 | 66 | 709 | 4.96e-59 | 215 |
| MS.gene29950.t1 | AT4G15090 | 24.965 | 721 | 447 | 17 | 50 | 753 | 66 | 709 | 4.96e-59 | 215 |
| MS.gene29950.t1 | AT4G15090 | 24.965 | 721 | 447 | 17 | 50 | 753 | 66 | 709 | 4.96e-59 | 215 |
| MS.gene29950.t1 | AT4G15090 | 24.965 | 721 | 447 | 17 | 50 | 753 | 66 | 709 | 4.96e-59 | 215 |
| MS.gene29950.t1 | AT2G27110 | 26.131 | 597 | 367 | 15 | 127 | 719 | 108 | 634 | 7.61e-52 | 194 |
| MS.gene29950.t1 | AT2G27110 | 26.131 | 597 | 367 | 15 | 127 | 719 | 108 | 634 | 7.61e-52 | 194 |
| MS.gene29950.t1 | AT2G27110 | 27.112 | 509 | 314 | 11 | 213 | 719 | 36 | 489 | 2.12e-51 | 191 |
| MS.gene29950.t1 | AT3G06250 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 7.52e-50 | 187 |
| MS.gene29950.t1 | AT3G06250 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 7.52e-50 | 187 |
| MS.gene29950.t1 | AT3G06250 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 7.52e-50 | 187 |
| MS.gene29950.t1 | AT1G76320 | 24.704 | 676 | 413 | 19 | 50 | 719 | 12 | 597 | 3.92e-49 | 184 |
| MS.gene29950.t1 | AT1G76320 | 24.704 | 676 | 413 | 19 | 50 | 719 | 12 | 597 | 1.22e-48 | 184 |
| MS.gene29950.t1 | AT1G76320 | 24.704 | 676 | 413 | 19 | 50 | 719 | 12 | 597 | 1.22e-48 | 184 |
| MS.gene29950.t1 | AT1G76320 | 24.704 | 676 | 413 | 19 | 50 | 719 | 12 | 597 | 1.45e-48 | 183 |
| MS.gene29950.t1 | AT3G22170 | 22.853 | 687 | 422 | 17 | 34 | 708 | 69 | 659 | 2.89e-45 | 175 |
| MS.gene29950.t1 | AT3G22170 | 22.853 | 687 | 422 | 17 | 34 | 708 | 69 | 659 | 2.89e-45 | 175 |
| MS.gene29950.t1 | AT5G18960 | 24.496 | 645 | 359 | 18 | 26 | 661 | 202 | 727 | 4.23e-44 | 171 |
| MS.gene29950.t1 | AT5G18960 | 24.496 | 645 | 359 | 18 | 26 | 661 | 202 | 727 | 4.23e-44 | 171 |
| MS.gene29950.t1 | AT1G10240 | 25.240 | 626 | 370 | 20 | 49 | 659 | 62 | 604 | 6.20e-43 | 166 |
| MS.gene29950.t1 | AT1G10240 | 25.240 | 626 | 370 | 20 | 49 | 659 | 62 | 604 | 6.20e-43 | 166 |
| MS.gene29950.t1 | AT4G38170 | 25.290 | 431 | 264 | 11 | 235 | 662 | 24 | 399 | 7.31e-43 | 164 |
| MS.gene29950.t1 | AT5G28530 | 23.631 | 639 | 391 | 17 | 40 | 660 | 60 | 619 | 1.01e-39 | 157 |
| MS.gene29950.t1 | AT5G28530 | 23.474 | 639 | 388 | 18 | 40 | 660 | 60 | 615 | 2.93e-39 | 155 |
| MS.gene29950.t1 | AT5G28530 | 23.474 | 639 | 388 | 18 | 40 | 660 | 60 | 615 | 2.93e-39 | 155 |
| MS.gene29950.t1 | AT2G32250 | 24.194 | 744 | 429 | 21 | 4 | 743 | 10 | 622 | 3.79e-39 | 155 |
| MS.gene29950.t1 | AT2G32250 | 24.194 | 744 | 429 | 21 | 4 | 743 | 10 | 622 | 4.30e-39 | 155 |
| MS.gene29950.t1 | AT2G32250 | 24.194 | 744 | 429 | 21 | 4 | 743 | 10 | 622 | 4.30e-39 | 155 |
| MS.gene29950.t1 | AT2G32250 | 24.194 | 744 | 429 | 21 | 4 | 743 | 10 | 622 | 4.88e-39 | 155 |
| MS.gene29950.t1 | AT2G32250 | 24.194 | 744 | 429 | 21 | 4 | 743 | 10 | 622 | 4.88e-39 | 155 |
| MS.gene29950.t1 | AT2G32250 | 24.194 | 744 | 429 | 21 | 4 | 743 | 10 | 622 | 4.88e-39 | 155 |
| MS.gene29950.t1 | AT2G32250 | 24.212 | 698 | 397 | 19 | 50 | 743 | 12 | 581 | 1.69e-38 | 154 |
| MS.gene29950.t1 | AT2G32250 | 24.212 | 698 | 397 | 19 | 50 | 743 | 12 | 581 | 2.00e-38 | 153 |
| MS.gene29950.t1 | AT1G80010 | 24.413 | 639 | 388 | 22 | 41 | 662 | 101 | 661 | 7.96e-38 | 151 |
| MS.gene29950.t1 | AT1G52520 | 22.311 | 623 | 408 | 16 | 41 | 662 | 91 | 638 | 2.16e-31 | 131 |
| MS.gene29950.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 5.60e-26 | 114 |
| MS.gene29950.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 1.22e-12 | 72.0 |
| MS.gene29950.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 6.36e-26 | 114 |
| MS.gene29950.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.31e-12 | 72.0 |
| MS.gene29950.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 177 | 440 | 6.63e-26 | 114 |
| MS.gene29950.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 1.37e-12 | 72.0 |
| MS.gene29950.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 6.96e-26 | 114 |
| MS.gene29950.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.25e-12 | 72.0 |
| MS.gene29950.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 6.96e-26 | 114 |
| MS.gene29950.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.25e-12 | 72.0 |
| MS.gene29950.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 7.16e-26 | 114 |
| MS.gene29950.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.19e-12 | 72.0 |
| MS.gene29950.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 7.16e-26 | 114 |
| MS.gene29950.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.19e-12 | 72.0 |
| MS.gene29950.t1 | AT5G28530 | 21.304 | 629 | 355 | 20 | 40 | 660 | 60 | 556 | 1.34e-20 | 97.1 |
Find 113 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3.4:+1314119 | MS.gene29950:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 3.4:+1313810 | MS.gene29950:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 3.4:-1314945 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3.4:+1314077 | MS.gene29950:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 3.4:+1313026 | MS.gene29950:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 3.4:+1313529 | MS.gene29950:intron |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 3.4:-1313656 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 3.4:-1314939 | None:intergenic |
| CATCGTATGAGTGTGTTATT+TGG | 0.302142 | 3.4:+1313562 | MS.gene29950:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 3.4:+1313851 | MS.gene29950:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 3.4:+1314791 | MS.gene29950:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 3.4:-1313076 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 3.4:+1314374 | MS.gene29950:CDS |
| ACTAGCCTGGTCTGTGTATA+TGG | 0.360230 | 3.4:-1313674 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 3.4:+1313951 | MS.gene29950:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 3.4:+1314783 | MS.gene29950:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 3.4:+1313083 | MS.gene29950:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 3.4:+1313075 | MS.gene29950:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 3.4:+1313950 | MS.gene29950:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 3.4:-1314667 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 3.4:-1312546 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 3.4:+1314931 | MS.gene29950:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3.4:-1314921 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3.4:+1314251 | MS.gene29950:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 3.4:+1314816 | MS.gene29950:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 3.4:+1312317 | MS.gene29950:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 3.4:+1314499 | MS.gene29950:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 3.4:-1314422 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 3.4:+1312388 | MS.gene29950:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 3.4:+1314457 | MS.gene29950:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 3.4:-1314423 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3.4:+1312723 | MS.gene29950:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 3.4:+1312605 | MS.gene29950:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 3.4:-1313667 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3.4:+1312588 | MS.gene29950:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 3.4:-1314600 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 3.4:+1312471 | MS.gene29950:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 3.4:+1312753 | MS.gene29950:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 3.4:+1312242 | MS.gene29950:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 3.4:+1313741 | MS.gene29950:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 3.4:+1314500 | MS.gene29950:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 3.4:+1312437 | MS.gene29950:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 3.4:+1312798 | MS.gene29950:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3.4:-1314253 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 3.4:-1312582 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 3.4:+1312375 | MS.gene29950:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 3.4:+1312866 | MS.gene29950:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 3.4:-1312693 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 3.4:+1312431 | MS.gene29950:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3.4:+1314267 | MS.gene29950:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 3.4:-1313542 | None:intergenic |
| CTGTCTATGAACCATCTGTT+GGG | 0.491412 | 3.4:+1314892 | MS.gene29950:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 3.4:+1313852 | MS.gene29950:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 3.4:+1312879 | MS.gene29950:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3.4:+1314091 | MS.gene29950:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 3.4:-1314171 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 3.4:+1312785 | MS.gene29950:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3.4:-1312971 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 3.4:-1312681 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 3.4:+1313938 | MS.gene29950:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 3.4:+1314436 | MS.gene29950:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 3.4:-1312837 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3.4:+1314110 | MS.gene29950:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 3.4:+1313956 | MS.gene29950:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 3.4:+1312641 | MS.gene29950:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 3.4:-1314416 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3.4:-1314059 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 3.4:+1314437 | MS.gene29950:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3.4:-1314248 | None:intergenic |
| ACTTCAACAACGCACTAGCC+TGG | 0.534735 | 3.4:-1313687 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 3.4:+1312482 | MS.gene29950:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3.4:-1314054 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3.4:+1314268 | MS.gene29950:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3.4:+1312483 | MS.gene29950:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 3.4:+1312307 | MS.gene29950:CDS |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 3.4:+1314657 | MS.gene29950:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 3.4:+1312933 | MS.gene29950:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 3.4:+1312266 | MS.gene29950:CDS |
| GCTGTCTATGAACCATCTGT+TGG | 0.568181 | 3.4:+1314891 | MS.gene29950:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 3.4:+1312801 | MS.gene29950:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 3.4:+1314743 | MS.gene29950:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 3.4:+1312640 | MS.gene29950:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 3.4:-1314172 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 3.4:-1314903 | None:intergenic |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 3.4:-1314193 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 3.4:+1312231 | MS.gene29950:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 3.4:+1312792 | MS.gene29950:CDS |
| AGACACTTAAAGTCCGAAGT+AGG | 0.589084 | 3.4:-1313907 | None:intergenic |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 3.4:+1314784 | MS.gene29950:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 3.4:+1314779 | MS.gene29950:CDS |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 3.4:+1314406 | MS.gene29950:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 3.4:-1314859 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 3.4:+1312872 | MS.gene29950:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 3.4:-1314691 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 3.4:+1312786 | MS.gene29950:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 3.4:+1312875 | MS.gene29950:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 3.4:+1314746 | MS.gene29950:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 3.4:+1314169 | MS.gene29950:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3.4:+1314254 | MS.gene29950:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 3.4:-1312531 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 3.4:+1312806 | MS.gene29950:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 3.4:-1314421 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 3.4:+1313742 | MS.gene29950:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 3.4:-1314664 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3.4:+1314092 | MS.gene29950:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 3.4:-1314642 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 3.4:-1314213 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 3.4:+1314768 | MS.gene29950:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 3.4:-1314518 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 3.4:+1314501 | MS.gene29950:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 3.4:+1314352 | MS.gene29950:CDS |
| TCAAACCATATACACAGACC+AGG | 0.683597 | 3.4:+1313669 | MS.gene29950:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 3.4:+1314353 | MS.gene29950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCTATAAGATATATAAG+TGG | + | chr3.4:1312640-1312659 | MS.gene29950:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr3.4:1312431-1312450 | MS.gene29950:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | + | chr3.4:1312641-1312660 | MS.gene29950:CDS | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr3.4:1312375-1312394 | MS.gene29950:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr3.4:1313258-1313277 | MS.gene29950:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr3.4:1313880-1313899 | MS.gene29950:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr3.4:1313230-1313249 | MS.gene29950:intron | 20.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr3.4:1312437-1312456 | MS.gene29950:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr3.4:1313075-1313094 | MS.gene29950:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr3.4:1313101-1313120 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr3.4:1314251-1314270 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | + | chr3.4:1312307-1312326 | MS.gene29950:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr3.4:1314077-1314096 | MS.gene29950:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr3.4:1312266-1312285 | MS.gene29950:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr3.4:1313148-1313167 | MS.gene29950:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr3.4:1314216-1314235 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr3.4:1314251-1314270 | MS.gene29950:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr3.4:1313810-1313829 | MS.gene29950:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr3.4:1313250-1313269 | MS.gene29950:intron | 25.0% |
| !! | TCAATTTCGAATGTTTTTCA+AGG | + | chr3.4:1313709-1313728 | MS.gene29950:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr3.4:1313506-1313525 | MS.gene29950:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr3.4:1314352-1314371 | MS.gene29950:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr3.4:1312427-1312446 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr3.4:1313257-1313276 | MS.gene29950:intron | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr3.4:1312753-1312772 | MS.gene29950:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr3.4:1313884-1313903 | MS.gene29950:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr3.4:1314353-1314372 | MS.gene29950:CDS | 25.0% |
| AAACACATATGATCTTTCCA+TGG | - | chr3.4:1313321-1313340 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr3.4:1312483-1312502 | MS.gene29950:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr3.4:1313083-1313102 | MS.gene29950:CDS | 30.0% | |
| AAGAAAGACCAAATCCAATT+AGG | + | chr3.4:1314931-1314950 | MS.gene29950:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr3.4:1313851-1313870 | MS.gene29950:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr3.4:1312786-1312805 | MS.gene29950:CDS | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | + | chr3.4:1312231-1312250 | MS.gene29950:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr3.4:1313852-1313871 | MS.gene29950:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr3.4:1313545-1313564 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr3.4:1314424-1314443 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr3.4:1313026-1313045 | MS.gene29950:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr3.4:1314256-1314275 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | + | chr3.4:1313187-1313206 | MS.gene29950:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr3.4:1314254-1314273 | MS.gene29950:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr3.4:1313766-1313785 | MS.gene29950:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr3.4:1314425-1314444 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr3.4:1313079-1313098 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr3.4:1312572-1312591 | MS.gene29950:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr3.4:1312317-1312336 | MS.gene29950:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr3.4:1314062-1314081 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr3.4:1312482-1312501 | MS.gene29950:CDS | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr3.4:1312954-1312973 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr3.4:1314196-1314215 | None:intergenic | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr3.4:1314942-1314961 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr3.4:1312840-1312859 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr3.4:1313465-1313484 | MS.gene29950:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr3.4:1312684-1312703 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr3.4:1312605-1312624 | MS.gene29950:CDS | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr3.4:1314311-1314330 | MS.gene29950:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr3.4:1312830-1312849 | MS.gene29950:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr3.4:1314768-1314787 | MS.gene29950:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr3.4:1313659-1313678 | None:intergenic | 30.0% |
| ! | TGAGGCTTTAACAATTTAAG+CGG | + | chr3.4:1315040-1315059 | MS.gene29950:intron | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr3.4:1314924-1314943 | None:intergenic | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr3.4:1314536-1314555 | MS.gene29950:CDS | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr3.4:1314436-1314455 | MS.gene29950:CDS | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr3.4:1313162-1313181 | MS.gene29950:intron | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr3.4:1314816-1314835 | MS.gene29950:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr3.4:1314437-1314456 | MS.gene29950:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr3.4:1314533-1314552 | MS.gene29950:CDS | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | + | chr3.4:1312988-1313007 | MS.gene29950:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | + | chr3.4:1312989-1313008 | MS.gene29950:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr3.4:1314601-1314620 | MS.gene29950:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr3.4:1313721-1313740 | MS.gene29950:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr3.4:1314091-1314110 | MS.gene29950:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr3.4:1312388-1312407 | MS.gene29950:CDS | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | - | chr3.4:1313288-1313307 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr3.4:1314092-1314111 | MS.gene29950:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr3.4:1312723-1312742 | MS.gene29950:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr3.4:1314426-1314445 | None:intergenic | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr3.4:1312471-1312490 | MS.gene29950:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr3.4:1312571-1312590 | MS.gene29950:CDS | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | + | chr3.4:1313938-1313957 | MS.gene29950:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr3.4:1312566-1312585 | MS.gene29950:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr3.4:1315022-1315041 | MS.gene29950:intron | 35.0% | |
| GACAGAAATTCCTTATAGCT+CGG | + | chr3.4:1314997-1315016 | MS.gene29950:intron | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr3.4:1312785-1312804 | MS.gene29950:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr3.4:1312508-1312527 | MS.gene29950:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr3.4:1312866-1312885 | MS.gene29950:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | - | chr3.4:1313297-1313316 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr3.4:1312549-1312568 | None:intergenic | 35.0% | |
| ! | CATCGTATGAGTGTGTTATT+TGG | + | chr3.4:1313562-1313581 | MS.gene29950:CDS | 35.0% |
| ! | GAGGCTTTAACAATTTAAGC+GGG | + | chr3.4:1315041-1315060 | MS.gene29950:intron | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr3.4:1314374-1314393 | MS.gene29950:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3.4:1314021-1314040 | MS.gene29950:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr3.4:1313168-1313187 | MS.gene29950:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr3.4:1313894-1313913 | MS.gene29950:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr3.4:1313734-1313753 | MS.gene29950:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr3.4:1314870-1314889 | None:intergenic | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr3.4:1314603-1314622 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr3.4:1313951-1313970 | MS.gene29950:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr3.4:1314543-1314562 | MS.gene29950:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr3.4:1313605-1313624 | MS.gene29950:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr3.4:1314604-1314623 | MS.gene29950:CDS | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr3.4:1314057-1314076 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr3.4:1313415-1313434 | None:intergenic | 40.0% | |
| AGACACTTAAAGTCCGAAGT+AGG | - | chr3.4:1313910-1313929 | None:intergenic | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr3.4:1314948-1314967 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr3.4:1312242-1312261 | MS.gene29950:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr3.4:1314268-1314287 | MS.gene29950:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr3.4:1314500-1314519 | MS.gene29950:CDS | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | + | chr3.4:1313301-1313320 | MS.gene29950:intron | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr3.4:1314779-1314798 | MS.gene29950:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr3.4:1314499-1314518 | MS.gene29950:CDS | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | + | chr3.4:1314657-1314676 | MS.gene29950:CDS | 40.0% | |
| CTGTCTATGAACCATCTGTT+GGG | + | chr3.4:1314892-1314911 | MS.gene29950:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | chr3.4:1314645-1314664 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr3.4:1314670-1314689 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr3.4:1314267-1314286 | MS.gene29950:CDS | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr3.4:1313669-1313688 | MS.gene29950:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr3.4:1313411-1313430 | MS.gene29950:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | - | chr3.4:1313000-1313019 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr3.4:1313670-1313689 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | + | chr3.4:1313529-1313548 | MS.gene29950:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr3.4:1314406-1314425 | MS.gene29950:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr3.4:1314694-1314713 | None:intergenic | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | - | chr3.4:1314667-1314686 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr3.4:1315010-1315029 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr3.4:1314119-1314138 | MS.gene29950:CDS | 40.0% |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr3.4:1314862-1314881 | None:intergenic | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr3.4:1314546-1314565 | MS.gene29950:CDS | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr3.4:1313950-1313969 | MS.gene29950:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr3.4:1312522-1312541 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr3.4:1312792-1312811 | MS.gene29950:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr3.4:1312875-1312894 | MS.gene29950:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr3.4:1312933-1312952 | MS.gene29950:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr3.4:1312534-1312553 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr3.4:1314169-1314188 | MS.gene29950:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr3.4:1314521-1314540 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | - | chr3.4:1312696-1312715 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr3.4:1312576-1312595 | MS.gene29950:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr3.4:1312872-1312891 | MS.gene29950:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr3.4:1314110-1314129 | MS.gene29950:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr3.4:1314419-1314438 | None:intergenic | 45.0% | |
| GCTGTCTATGAACCATCTGT+TGG | + | chr3.4:1314891-1314910 | MS.gene29950:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr3.4:1314501-1314520 | MS.gene29950:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr3.4:1312974-1312993 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr3.4:1314791-1314810 | MS.gene29950:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr3.4:1312585-1312604 | None:intergenic | 45.0% | |
| ! | ACTAGCCTGGTCTGTGTATA+TGG | - | chr3.4:1313677-1313696 | None:intergenic | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr3.4:1313973-1313992 | MS.gene29950:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr3.4:1313956-1313975 | MS.gene29950:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3.4:1312588-1312607 | MS.gene29950:CDS | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr3.4:1312996-1313015 | MS.gene29950:CDS | 45.0% |
| ACTTCAACAACGCACTAGCC+TGG | - | chr3.4:1313690-1313709 | None:intergenic | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr3.4:1314174-1314193 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | + | chr3.4:1314457-1314476 | MS.gene29950:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr3.4:1313742-1313761 | MS.gene29950:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | + | chr3.4:1314743-1314762 | MS.gene29950:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr3.4:1314784-1314803 | MS.gene29950:CDS | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | + | chr3.4:1313277-1313296 | MS.gene29950:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr3.4:1313741-1313760 | MS.gene29950:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr3.4:1314906-1314925 | None:intergenic | 50.0% |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr3.4:1312798-1312817 | MS.gene29950:CDS | 50.0% |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr3.4:1314783-1314802 | MS.gene29950:CDS | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr3.4:1314175-1314194 | None:intergenic | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | + | chr3.4:1314797-1314816 | MS.gene29950:CDS | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr3.4:1312879-1312898 | MS.gene29950:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr3.4:1312801-1312820 | MS.gene29950:CDS | 55.0% |
| ACGTGTTTGCGCAGATGCGG+AGG | + | chr3.4:1314746-1314765 | MS.gene29950:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr3.4:1312806-1312825 | MS.gene29950:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 1312222 | 1315069 | 1312222 | ID=MS.gene29950 |
| chr3.4 | mRNA | 1312222 | 1315069 | 1312222 | ID=MS.gene29950.t1;Parent=MS.gene29950 |
| chr3.4 | exon | 1312222 | 1313104 | 1312222 | ID=MS.gene29950.t1.exon1;Parent=MS.gene29950.t1 |
| chr3.4 | CDS | 1312222 | 1313104 | 1312222 | ID=cds.MS.gene29950.t1;Parent=MS.gene29950.t1 |
| chr3.4 | exon | 1313539 | 1314952 | 1313539 | ID=MS.gene29950.t1.exon2;Parent=MS.gene29950.t1 |
| chr3.4 | CDS | 1313539 | 1314952 | 1313539 | ID=cds.MS.gene29950.t1;Parent=MS.gene29950.t1 |
| chr3.4 | exon | 1315060 | 1315069 | 1315060 | ID=MS.gene29950.t1.exon3;Parent=MS.gene29950.t1 |
| chr3.4 | CDS | 1315060 | 1315069 | 1315060 | ID=cds.MS.gene29950.t1;Parent=MS.gene29950.t1 |
| Gene Sequence |
| Protein sequence |