Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30101.t1 | XP_003600003.2 | 80.1 | 246 | 36 | 2 | 2 | 247 | 3 | 235 | 1.00E-114 | 422.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30101.t1 | Q9LT81 | 38.2 | 285 | 112 | 8 | 22 | 243 | 93 | 376 | 1.3e-43 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30101.t1 | G7J1X0 | 80.1 | 246 | 36 | 2 | 2 | 247 | 3 | 235 | 7.2e-115 | 422.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene30101.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30101.t1 | MTR_3g050390 | 80.081 | 246 | 36 | 2 | 2 | 247 | 3 | 235 | 7.02e-144 | 402 |
| MS.gene30101.t1 | MTR_4g113860 | 51.880 | 266 | 102 | 7 | 6 | 247 | 51 | 314 | 5.72e-81 | 246 |
| MS.gene30101.t1 | MTR_4g113970 | 56.585 | 205 | 63 | 6 | 6 | 185 | 44 | 247 | 2.53e-69 | 214 |
| MS.gene30101.t1 | MTR_4g113940 | 47.951 | 244 | 102 | 6 | 16 | 240 | 33 | 270 | 5.83e-68 | 211 |
| MS.gene30101.t1 | MTR_4g113890 | 41.736 | 242 | 83 | 6 | 14 | 239 | 31 | 230 | 3.97e-47 | 156 |
| MS.gene30101.t1 | MTR_8g066730 | 26.829 | 287 | 129 | 6 | 32 | 240 | 91 | 374 | 3.25e-25 | 102 |
| MS.gene30101.t1 | MTR_8g066730 | 31.000 | 200 | 92 | 4 | 32 | 188 | 91 | 287 | 2.66e-24 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30101.t1 | AT3G19360 | 37.676 | 284 | 115 | 7 | 22 | 243 | 93 | 376 | 1.25e-49 | 167 |
| MS.gene30101.t1 | AT3G19360 | 37.676 | 284 | 115 | 7 | 22 | 243 | 93 | 376 | 1.25e-49 | 167 |
| MS.gene30101.t1 | AT1G32360 | 27.027 | 296 | 126 | 6 | 32 | 240 | 90 | 382 | 2.94e-22 | 94.7 |
Find 73 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGAATGGATGCAGTTTC+TGG | 0.193826 | 3.2:+42505782 | MS.gene30101:CDS |
| ATTCTTGCCCTCTTGTTCTT+TGG | 0.226992 | 3.2:-42505558 | None:intergenic |
| CGGAGATGGTTCTAATAGTT+TGG | 0.293400 | 3.2:+42505959 | MS.gene30101:CDS |
| TCCTCTGCACTTGGCTAGTT+GGG | 0.297541 | 3.2:-42507316 | None:intergenic |
| ATAGACTTAGGGATGATTCT+TGG | 0.310304 | 3.2:+42505898 | MS.gene30101:CDS |
| TTTGCCACACTTAGACTTGC+TGG | 0.314187 | 3.2:-42507190 | None:intergenic |
| AAACAGGGCGCTGTCCCTTT+GGG | 0.316622 | 3.2:+42506054 | MS.gene30101:CDS |
| CTCGTATTTGTCATAAGTTC+AGG | 0.326388 | 3.2:+42505658 | MS.gene30101:CDS |
| ACCAAATGTCTTGCCAGTTT+CGG | 0.332974 | 3.2:+42507144 | MS.gene30101:CDS |
| TTACAGTAAGTCTCCCTTGC+TGG | 0.338395 | 3.2:-42506005 | None:intergenic |
| CAAACAGGGCGCTGTCCCTT+TGG | 0.348807 | 3.2:+42506053 | MS.gene30101:CDS |
| TTAATACTATATATGTTGAT+TGG | 0.349170 | 3.2:+42507269 | MS.gene30101:CDS |
| CTCCTCTGCACTTGGCTAGT+TGG | 0.355356 | 3.2:-42507317 | None:intergenic |
| TAAGGAAGCCATTGCCGAAT+TGG | 0.366423 | 3.2:+42505736 | MS.gene30101:CDS |
| GCCGAAACTGGCAAGACATT+TGG | 0.372288 | 3.2:-42507145 | None:intergenic |
| GGTGCATCATTGGCCGAAAC+TGG | 0.373504 | 3.2:-42507157 | None:intergenic |
| TCGACTGTTTCTTTGTTTGA+TGG | 0.382645 | 3.2:-42505621 | None:intergenic |
| AGACTTGCTGGGATGCTTGT+AGG | 0.406856 | 3.2:-42507178 | None:intergenic |
| TGTCCCATGTGGAAGCAAAC+AGG | 0.413714 | 3.2:+42506038 | MS.gene30101:CDS |
| CTAATAGTTTGGAAGGCAAC+AGG | 0.423700 | 3.2:+42505970 | MS.gene30101:CDS |
| ATTTGTCATAAGTTCAGGTT+TGG | 0.439137 | 3.2:+42505663 | MS.gene30101:CDS |
| TTTAATTTCCACCAAAGTAA+AGG | 0.443077 | 3.2:-42507238 | None:intergenic |
| TTGCCACACTTAGACTTGCT+GGG | 0.445723 | 3.2:-42507189 | None:intergenic |
| AATGGTGAGGAATGTCCTTA+TGG | 0.454214 | 3.2:+42505855 | MS.gene30101:CDS |
| CACTATGCTCACGGAGAAGC+AGG | 0.461007 | 3.2:+42506086 | MS.gene30101:CDS |
| AGACGAAGCCTTTACTTTGG+TGG | 0.462105 | 3.2:+42507230 | MS.gene30101:CDS |
| CAGAAAATCATTCACAAGAT+GGG | 0.463529 | 3.2:+42505813 | MS.gene30101:CDS |
| GGCTAGTTGGGTAGAATAAG+AGG | 0.468838 | 3.2:-42507304 | None:intergenic |
| TCAGAAAATCATTCACAAGA+TGG | 0.481007 | 3.2:+42505812 | MS.gene30101:CDS |
| CTCACGGGGTTGGTGAGATA+AGG | 0.482058 | 3.2:+42505718 | MS.gene30101:CDS |
| GATGCTTGTAGGTGCATCAT+TGG | 0.488672 | 3.2:-42507167 | None:intergenic |
| CCAGCTAGCTCCTTCCAATT+CGG | 0.489768 | 3.2:-42505750 | None:intergenic |
| TAGGTACAATGTTCACCTTT+CGG | 0.492110 | 3.2:-42505693 | None:intergenic |
| AAACAACACTTATCACCATA+AGG | 0.495083 | 3.2:-42505870 | None:intergenic |
| TCTAAGTGTGGCAAAGGAAG+TGG | 0.499183 | 3.2:+42507198 | MS.gene30101:CDS |
| CTAAGACGAAGCCTTTACTT+TGG | 0.500430 | 3.2:+42507227 | MS.gene30101:CDS |
| CTGGCTCTCGCAGCAAGGAA+TGG | 0.502304 | 3.2:+42505769 | MS.gene30101:CDS |
| ACTTCCAATGTTTAATGCAC+AGG | 0.503756 | 3.2:-42505934 | None:intergenic |
| GTTTCTTTGTTTGATGGAAG+AGG | 0.506318 | 3.2:-42505615 | None:intergenic |
| AACATTGTACCTATGCTCAC+GGG | 0.508915 | 3.2:+42505703 | MS.gene30101:CDS |
| CGCCCTGTTTGCTTCCACAT+GGG | 0.512778 | 3.2:-42506041 | None:intergenic |
| CCGAATTGGAAGGAGCTAGC+TGG | 0.513357 | 3.2:+42505750 | MS.gene30101:CDS |
| AGCTCCTTCCAATTCGGCAA+TGG | 0.514329 | 3.2:-42505744 | None:intergenic |
| TTTCTTTGTTTGATGGAAGA+GGG | 0.528979 | 3.2:-42505614 | None:intergenic |
| GATGGTTCTAATAGTTTGGA+AGG | 0.532918 | 3.2:+42505963 | MS.gene30101:CDS |
| TGTACCTATGCTCACGGGGT+TGG | 0.546278 | 3.2:+42505708 | MS.gene30101:CDS |
| GCGCCCTGTTTGCTTCCACA+TGG | 0.548498 | 3.2:-42506042 | None:intergenic |
| GCATTAAACATTGGAAGTAT+CGG | 0.556102 | 3.2:+42505939 | MS.gene30101:CDS |
| AGCAAGTCTAAGTGTGGCAA+AGG | 0.556244 | 3.2:+42507192 | MS.gene30101:CDS |
| AACAGGGCGCTGTCCCTTTG+GGG | 0.562619 | 3.2:+42506055 | MS.gene30101:CDS |
| AGGTTTGGTAATTGTCCGAA+AGG | 0.564006 | 3.2:+42505678 | MS.gene30101:CDS |
| TAGTGGCAGTCGTCCCCAAA+GGG | 0.568125 | 3.2:-42506068 | None:intergenic |
| AACATTGGAAGTATCGGAGA+TGG | 0.569972 | 3.2:+42505945 | MS.gene30101:CDS |
| GACGACTGCCACTATGCTCA+CGG | 0.575629 | 3.2:+42506077 | MS.gene30101:CDS |
| GAACATTGTACCTATGCTCA+CGG | 0.579167 | 3.2:+42505702 | MS.gene30101:CDS |
| GGTCTGTGAACAAGCCAGCA+AGG | 0.586365 | 3.2:+42505991 | MS.gene30101:CDS |
| GTCTGTGAACAAGCCAGCAA+GGG | 0.590502 | 3.2:+42505992 | MS.gene30101:CDS |
| GAAGCCATTGCCGAATTGGA+AGG | 0.591683 | 3.2:+42505740 | MS.gene30101:CDS |
| TCATGTTTCCAAAGAACAAG+AGG | 0.592600 | 3.2:+42505550 | None:intergenic |
| GTCCCATGTGGAAGCAAACA+GGG | 0.595288 | 3.2:+42506039 | MS.gene30101:CDS |
| AGAAAATCATTCACAAGATG+GGG | 0.602501 | 3.2:+42505814 | MS.gene30101:CDS |
| GAGGCCTGTGCATTAAACAT+TGG | 0.604839 | 3.2:+42505930 | MS.gene30101:CDS |
| GCTAGCTGGCTCTCGCAGCA+AGG | 0.609767 | 3.2:+42505764 | MS.gene30101:CDS |
| CTGCTTCTCCGTGAGCATAG+TGG | 0.615620 | 3.2:-42506085 | None:intergenic |
| CTCACCAACCCCGTGAGCAT+AGG | 0.617079 | 3.2:-42505712 | None:intergenic |
| ATAGTGGCAGTCGTCCCCAA+AGG | 0.626422 | 3.2:-42506069 | None:intergenic |
| CATGTTTCCAAAGAACAAGA+GGG | 0.650159 | 3.2:+42505551 | None:intergenic |
| CATCCCAGCAAGTCTAAGTG+TGG | 0.664369 | 3.2:+42507186 | MS.gene30101:CDS |
| CAAGAAATACTACAATGGTG+AGG | 0.666991 | 3.2:+42505842 | MS.gene30101:CDS |
| CTATGCAAGAAATACTACAA+TGG | 0.669884 | 3.2:+42505837 | MS.gene30101:CDS |
| TGATTCTTGGAAATCAAGAG+AGG | 0.676002 | 3.2:+42505911 | MS.gene30101:CDS |
| ACATTGTACCTATGCTCACG+GGG | 0.692970 | 3.2:+42505704 | MS.gene30101:CDS |
| AGACTAAGCTGTGTCCCATG+TGG | 0.715051 | 3.2:+42506027 | MS.gene30101:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATACTATATATGTTGAT+TGG | + | chr3.2:42507269-42507288 | MS.gene30101:CDS | 15.0% |
| !!! | ACAATATTTTATACTAGATA+GGG | + | chr3.2:42506722-42506741 | MS.gene30101:intron | 15.0% |
| !! | TATAAAATATTGTGAAACAG+CGG | - | chr3.2:42506715-42506734 | None:intergenic | 20.0% |
| !! | TTATAACAATCAAATCTGTT+TGG | + | chr3.2:42507084-42507103 | MS.gene30101:intron | 20.0% |
| !!! | CACAATATTTTATACTAGAT+AGG | + | chr3.2:42506721-42506740 | MS.gene30101:intron | 20.0% |
| ! | AACAACATTCACATAAAGTA+AGG | - | chr3.2:42506430-42506449 | None:intergenic | 25.0% |
| ! | GGTAATGATAATATTGGTAT+TGG | + | chr3.2:42506107-42506126 | MS.gene30101:intron | 25.0% |
| ! | TTATACTAGATAGGGTATAA+TGG | + | chr3.2:42506730-42506749 | MS.gene30101:intron | 25.0% |
| ! | TTGAACAAATCAAAACAGAA+CGG | - | chr3.2:42506153-42506172 | None:intergenic | 25.0% |
| !! | TTGTTTTCTTCATAGACTTA+GGG | + | chr3.2:42505887-42505906 | MS.gene30101:CDS | 25.0% |
| !! | TTTAATTTCCACCAAAGTAA+AGG | - | chr3.2:42507241-42507260 | None:intergenic | 25.0% |
| !!! | GTGTGTGATATTTTTATGTT+TGG | + | chr3.2:42506278-42506297 | MS.gene30101:intron | 25.0% |
| AAACAACACTTATCACCATA+AGG | - | chr3.2:42505873-42505892 | None:intergenic | 30.0% | |
| AAGAATCAGAAGAAGATACA+AGG | - | chr3.2:42507113-42507132 | None:intergenic | 30.0% | |
| AGAAAATCATTCACAAGATG+GGG | + | chr3.2:42505814-42505833 | MS.gene30101:CDS | 30.0% | |
| AGAATATGATCAACTACCTT+AGG | - | chr3.2:42506326-42506345 | None:intergenic | 30.0% | |
| CAGAAAATCATTCACAAGAT+GGG | + | chr3.2:42505813-42505832 | MS.gene30101:CDS | 30.0% | |
| CTATGCAAGAAATACTACAA+TGG | + | chr3.2:42505837-42505856 | MS.gene30101:CDS | 30.0% | |
| GAAGCAGGTAATGATAATAT+TGG | + | chr3.2:42506101-42506120 | MS.gene30101:intron | 30.0% | |
| TATGTTTGACTGCAACATTA+CGG | - | chr3.2:42506908-42506927 | None:intergenic | 30.0% | |
| TCAGAAAATCATTCACAAGA+TGG | + | chr3.2:42505812-42505831 | MS.gene30101:CDS | 30.0% | |
| TTATAGTGTTTGATTGAGTG+TGG | + | chr3.2:42506244-42506263 | MS.gene30101:intron | 30.0% | |
| TTGTTAAATTGTCGCCATAA+CGG | + | chr3.2:42506445-42506464 | MS.gene30101:intron | 30.0% | |
| ! | ATTTGTCATAAGTTCAGGTT+TGG | + | chr3.2:42505663-42505682 | MS.gene30101:CDS | 30.0% |
| ! | GCATTAAACATTGGAAGTAT+CGG | + | chr3.2:42505939-42505958 | MS.gene30101:CDS | 30.0% |
| ! | TTTCTTTGTTTGATGGAAGA+GGG | - | chr3.2:42505617-42505636 | None:intergenic | 30.0% |
| !! | GTTGTTTTCTTCATAGACTT+AGG | + | chr3.2:42505886-42505905 | MS.gene30101:CDS | 30.0% |
| !! | TCATATTCTGAAAGAGCATT+TGG | + | chr3.2:42506337-42506356 | MS.gene30101:intron | 30.0% |
| AAAAACCAAGAGGAGAAACA+GGG | - | chr3.2:42506794-42506813 | None:intergenic | 35.0% | |
| AAAAATCTGGCATACAAGCA+TGG | - | chr3.2:42506555-42506574 | None:intergenic | 35.0% | |
| AATCATCAGCAAAAACCAAG+AGG | - | chr3.2:42506804-42506823 | None:intergenic | 35.0% | |
| ACTTCCAATGTTTAATGCAC+AGG | - | chr3.2:42505937-42505956 | None:intergenic | 35.0% | |
| ATAGACTTAGGGATGATTCT+TGG | + | chr3.2:42505898-42505917 | MS.gene30101:CDS | 35.0% | |
| ATATGATCAACTACCTTAGG+AGG | - | chr3.2:42506323-42506342 | None:intergenic | 35.0% | |
| CAAGAAATACTACAATGGTG+AGG | + | chr3.2:42505842-42505861 | MS.gene30101:CDS | 35.0% | |
| CTCGTATTTGTCATAAGTTC+AGG | + | chr3.2:42505658-42505677 | MS.gene30101:CDS | 35.0% | |
| GCTACAATGGCTATTATATC+CGG | + | chr3.2:42506505-42506524 | MS.gene30101:intron | 35.0% | |
| TAGGTACAATGTTCACCTTT+CGG | - | chr3.2:42505696-42505715 | None:intergenic | 35.0% | |
| TATGATCAACTACCTTAGGA+GGG | - | chr3.2:42506322-42506341 | None:intergenic | 35.0% | |
| TGACAACAGTATGTAAACCT+CGG | - | chr3.2:42506625-42506644 | None:intergenic | 35.0% | |
| TGATTCTTGGAAATCAAGAG+AGG | + | chr3.2:42505911-42505930 | MS.gene30101:CDS | 35.0% | |
| TGTCTGACTCATCAATAAGT+TGG | + | chr3.2:42506835-42506854 | MS.gene30101:intron | 35.0% | |
| TGTTATCATAAGTGGAAGGA+AGG | - | chr3.2:42506593-42506612 | None:intergenic | 35.0% | |
| ! | ATGCTTGTATGCCAGATTTT+TGG | + | chr3.2:42506554-42506573 | MS.gene30101:intron | 35.0% |
| ! | GTTTCTTTGTTTGATGGAAG+AGG | - | chr3.2:42505618-42505637 | None:intergenic | 35.0% |
| ! | TCGACTGTTTCTTTGTTTGA+TGG | - | chr3.2:42505624-42505643 | None:intergenic | 35.0% |
| !! | GATGGTTCTAATAGTTTGGA+AGG | + | chr3.2:42505963-42505982 | MS.gene30101:CDS | 35.0% |
| AACATTGTACCTATGCTCAC+GGG | + | chr3.2:42505703-42505722 | MS.gene30101:CDS | 40.0% | |
| AACATTTGCAACCACGATTG+TGG | - | chr3.2:42506984-42507003 | None:intergenic | 40.0% | |
| AATGGTGAGGAATGTCCTTA+TGG | + | chr3.2:42505855-42505874 | MS.gene30101:CDS | 40.0% | |
| ACCAAATGTCTTGCCAGTTT+CGG | + | chr3.2:42507144-42507163 | MS.gene30101:CDS | 40.0% | |
| ATAGCCATTGTAGCCTATAG+CGG | - | chr3.2:42506499-42506518 | None:intergenic | 40.0% | |
| ATGATCAACTACCTTAGGAG+GGG | - | chr3.2:42506321-42506340 | None:intergenic | 40.0% | |
| ATTCTTGCCCTCTTGTTCTT+TGG | - | chr3.2:42505561-42505580 | None:intergenic | 40.0% | |
| CAAAAACCAAGAGGAGAAAC+AGG | - | chr3.2:42506795-42506814 | None:intergenic | 40.0% | |
| CAGAGCAGTGTTATCATAAG+TGG | - | chr3.2:42506601-42506620 | None:intergenic | 40.0% | |
| CTAAGACGAAGCCTTTACTT+TGG | + | chr3.2:42507227-42507246 | MS.gene30101:CDS | 40.0% | |
| CTAATAGTTTGGAAGGCAAC+AGG | + | chr3.2:42505970-42505989 | MS.gene30101:CDS | 40.0% | |
| CTGTTGTCAATTGTAGATCG+CGG | + | chr3.2:42506636-42506655 | MS.gene30101:intron | 40.0% | |
| GAACATTGTACCTATGCTCA+CGG | + | chr3.2:42505702-42505721 | MS.gene30101:CDS | 40.0% | |
| GAGGTACATTTCTCATTGCA+AGG | + | chr3.2:42506857-42506876 | MS.gene30101:intron | 40.0% | |
| GCAATAGAATTGTTGTGCAG+CGG | - | chr3.2:42506684-42506703 | None:intergenic | 40.0% | |
| GCAGTGTTATCATAAGTGGA+AGG | - | chr3.2:42506597-42506616 | None:intergenic | 40.0% | |
| ! | AGGTTTGGTAATTGTCCGAA+AGG | + | chr3.2:42505678-42505697 | MS.gene30101:CDS | 40.0% |
| ! | CTGACTCATCAATAAGTTGG+AGG | + | chr3.2:42506838-42506857 | MS.gene30101:intron | 40.0% |
| !! | AACATTGGAAGTATCGGAGA+TGG | + | chr3.2:42505945-42505964 | MS.gene30101:CDS | 40.0% |
| !! | CGGAGATGGTTCTAATAGTT+TGG | + | chr3.2:42505959-42505978 | MS.gene30101:CDS | 40.0% |
| !! | TAACGTTTTAGCCACAATCG+TGG | + | chr3.2:42506970-42506989 | MS.gene30101:intron | 40.0% |
| ACATAAACTTGCCCCTCCTA+AGG | + | chr3.2:42506307-42506326 | MS.gene30101:intron | 45.0% | |
| ACATTGTACCTATGCTCACG+GGG | + | chr3.2:42505704-42505723 | MS.gene30101:CDS | 45.0% | |
| AGACGAAGCCTTTACTTTGG+TGG | + | chr3.2:42507230-42507249 | MS.gene30101:CDS | 45.0% | |
| AGCAAGTCTAAGTGTGGCAA+AGG | + | chr3.2:42507192-42507211 | MS.gene30101:CDS | 45.0% | |
| ATGGCAGCTAGCCAAAAATC+TGG | - | chr3.2:42506568-42506587 | None:intergenic | 45.0% | |
| CAAGGAATGGATGCAGTTTC+TGG | + | chr3.2:42505782-42505801 | MS.gene30101:CDS | 45.0% | |
| CATAAGTGGAAGGAAGGCTA+TGG | - | chr3.2:42506587-42506606 | None:intergenic | 45.0% | |
| GAGGCCTGTGCATTAAACAT+TGG | + | chr3.2:42505930-42505949 | MS.gene30101:CDS | 45.0% | |
| GATGCTTGTAGGTGCATCAT+TGG | - | chr3.2:42507170-42507189 | None:intergenic | 45.0% | |
| GTTATCACACGAAAACGAGC+AGG | - | chr3.2:42507017-42507036 | None:intergenic | 45.0% | |
| TAAGGAAGCCATTGCCGAAT+TGG | + | chr3.2:42505736-42505755 | MS.gene30101:CDS | 45.0% | |
| TCTAAGTGTGGCAAAGGAAG+TGG | + | chr3.2:42507198-42507217 | MS.gene30101:CDS | 45.0% | |
| TTACAGTAAGTCTCCCTTGC+TGG | - | chr3.2:42506008-42506027 | None:intergenic | 45.0% | |
| TTTGCCACACTTAGACTTGC+TGG | - | chr3.2:42507193-42507212 | None:intergenic | 45.0% | |
| ! | TTGCCACACTTAGACTTGCT+GGG | - | chr3.2:42507192-42507211 | None:intergenic | 45.0% |
| AACCAAGAGGAGAAACAGGG+TGG | - | chr3.2:42506791-42506810 | None:intergenic | 50.0% | |
| AGACTAAGCTGTGTCCCATG+TGG | + | chr3.2:42506027-42506046 | MS.gene30101:CDS | 50.0% | |
| AGCTCCTTCCAATTCGGCAA+TGG | - | chr3.2:42505747-42505766 | None:intergenic | 50.0% | |
| CATCCCAGCAAGTCTAAGTG+TGG | + | chr3.2:42507186-42507205 | MS.gene30101:CDS | 50.0% | |
| CCAGCTAGCTCCTTCCAATT+CGG | - | chr3.2:42505753-42505772 | None:intergenic | 50.0% | |
| GAAGCCATTGCCGAATTGGA+AGG | + | chr3.2:42505740-42505759 | MS.gene30101:CDS | 50.0% | |
| GCACAAAATCCTCCATGCCT+TGG | - | chr3.2:42506473-42506492 | None:intergenic | 50.0% | |
| GCCGAAACTGGCAAGACATT+TGG | - | chr3.2:42507148-42507167 | None:intergenic | 50.0% | |
| GTCCCATGTGGAAGCAAACA+GGG | + | chr3.2:42506039-42506058 | MS.gene30101:CDS | 50.0% | |
| GTCTGTGAACAAGCCAGCAA+GGG | + | chr3.2:42505992-42506011 | MS.gene30101:CDS | 50.0% | |
| TGATAACACTGCTCTGTCCG+AGG | + | chr3.2:42506605-42506624 | MS.gene30101:intron | 50.0% | |
| TGCAACTGCAGTTGTGATCG+CGG | + | chr3.2:42506933-42506952 | MS.gene30101:intron | 50.0% | |
| TGTCCCATGTGGAAGCAAAC+AGG | + | chr3.2:42506038-42506057 | MS.gene30101:CDS | 50.0% | |
| ! | ATCCGGCATGTTTCTGCCAT+AGG | + | chr3.2:42506522-42506541 | MS.gene30101:intron | 50.0% |
| ! | GATTTTGTGCCAGCCGCTAT+AGG | + | chr3.2:42506483-42506502 | MS.gene30101:intron | 50.0% |
| ! | TGGCATACAAGCATGGACTG+TGG | - | chr3.2:42506548-42506567 | None:intergenic | 50.0% |
| ! | TTCCACCCTGTTTCTCCTCT+TGG | + | chr3.2:42506786-42506805 | MS.gene30101:intron | 50.0% |
| !! | AGACTTGCTGGGATGCTTGT+AGG | - | chr3.2:42507181-42507200 | None:intergenic | 50.0% |
| ATAACGGCACCAAGGCATGG+AGG | + | chr3.2:42506461-42506480 | MS.gene30101:intron | 55.0% | |
| ATAGTGGCAGTCGTCCCCAA+AGG | - | chr3.2:42506072-42506091 | None:intergenic | 55.0% | |
| CACTATGCTCACGGAGAAGC+AGG | + | chr3.2:42506086-42506105 | MS.gene30101:CDS | 55.0% | |
| CCAGCCGCTATAGGCTACAA+TGG | + | chr3.2:42506492-42506511 | MS.gene30101:intron | 55.0% | |
| CCATTGTAGCCTATAGCGGC+TGG | - | chr3.2:42506495-42506514 | None:intergenic | 55.0% | |
| CCGAATTGGAAGGAGCTAGC+TGG | + | chr3.2:42505750-42505769 | MS.gene30101:CDS | 55.0% | |
| CGCCCTGTTTGCTTCCACAT+GGG | - | chr3.2:42506044-42506063 | None:intergenic | 55.0% | |
| CTGCTTCTCCGTGAGCATAG+TGG | - | chr3.2:42506088-42506107 | None:intergenic | 55.0% | |
| GACGACTGCCACTATGCTCA+CGG | + | chr3.2:42506077-42506096 | MS.gene30101:CDS | 55.0% | |
| GGCCTATGGCAGAAACATGC+CGG | - | chr3.2:42506527-42506546 | None:intergenic | 55.0% | |
| GGTCTGTGAACAAGCCAGCA+AGG | + | chr3.2:42505991-42506010 | MS.gene30101:CDS | 55.0% | |
| GGTGCATCATTGGCCGAAAC+TGG | - | chr3.2:42507160-42507179 | None:intergenic | 55.0% | |
| TAGTGGCAGTCGTCCCCAAA+GGG | - | chr3.2:42506071-42506090 | None:intergenic | 55.0% | |
| TGTACCTATGCTCACGGGGT+TGG | + | chr3.2:42505708-42505727 | MS.gene30101:CDS | 55.0% | |
| TTGTCGCCATAACGGCACCA+AGG | + | chr3.2:42506453-42506472 | MS.gene30101:intron | 55.0% | |
| ! | CAAGCATGGACTGTGGCCTA+TGG | - | chr3.2:42506541-42506560 | None:intergenic | 55.0% |
| !! | AAACAGGGCGCTGTCCCTTT+GGG | + | chr3.2:42506054-42506073 | MS.gene30101:CDS | 55.0% |
| !! | CTCACGGGGTTGGTGAGATA+AGG | + | chr3.2:42505718-42505737 | MS.gene30101:CDS | 55.0% |
| !! | TCCATGCCTTGGTGCCGTTA+TGG | - | chr3.2:42506462-42506481 | None:intergenic | 55.0% |
| CTCACCAACCCCGTGAGCAT+AGG | - | chr3.2:42505715-42505734 | None:intergenic | 60.0% | |
| GCCATAACGGCACCAAGGCA+TGG | + | chr3.2:42506458-42506477 | MS.gene30101:intron | 60.0% | |
| GCGCCCTGTTTGCTTCCACA+TGG | - | chr3.2:42506045-42506064 | None:intergenic | 60.0% | |
| ! | CTGGCTCTCGCAGCAAGGAA+TGG | + | chr3.2:42505769-42505788 | MS.gene30101:CDS | 60.0% |
| !! | AACAGGGCGCTGTCCCTTTG+GGG | + | chr3.2:42506055-42506074 | MS.gene30101:CDS | 60.0% |
| !! | CAAACAGGGCGCTGTCCCTT+TGG | + | chr3.2:42506053-42506072 | MS.gene30101:CDS | 60.0% |
| ! | GCTAGCTGGCTCTCGCAGCA+AGG | + | chr3.2:42505764-42505783 | MS.gene30101:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 42505552 | 42507324 | 42505552 | ID=MS.gene30101 |
| chr3.2 | mRNA | 42505552 | 42507324 | 42505552 | ID=MS.gene30101.t1;Parent=MS.gene30101 |
| chr3.2 | exon | 42505552 | 42506107 | 42505552 | ID=MS.gene30101.t1.exon1;Parent=MS.gene30101.t1 |
| chr3.2 | CDS | 42505552 | 42506107 | 42505552 | ID=cds.MS.gene30101.t1;Parent=MS.gene30101.t1 |
| chr3.2 | exon | 42507137 | 42507324 | 42507137 | ID=MS.gene30101.t1.exon2;Parent=MS.gene30101.t1 |
| chr3.2 | CDS | 42507137 | 42507324 | 42507137 | ID=cds.MS.gene30101.t1;Parent=MS.gene30101.t1 |
| Gene Sequence |
| Protein sequence |
