AlfalfaGEDB | MS.gene30123

M. sativa cultivar XinJiangDaYe / MS.gene30123

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30123.t1	XP_013462287.1	59.1	335	122	5	7	327	32	365	3.50E-99	371.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30123.t1	Q9SII6	52.6	308	125	7	35	324	64	368	4.8e-81	302.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30123.t1	A0A072V3B8	59.1	335	122	5	7	327	32	365	2.5e-99	371.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30123.t1	MTR_3g115490	61.111	324	110	6	18	327	44	365	8.99e-128	371
MS.gene30123.t1	MTR_8g073560	51.299	308	131	5	35	324	55	361	8.46e-104	310
MS.gene30123.t1	MTR_5g023980	49.524	315	138	6	30	324	49	362	1.05e-101	304
MS.gene30123.t1	MTR_5g099130	49.375	320	136	7	26	327	64	375	4.53e-97	292
MS.gene30123.t1	MTR_5g099130	49.375	320	136	7	26	327	75	386	9.82e-97	292
MS.gene30123.t1	MTR_5g099130	49.375	320	136	7	26	327	71	382	1.38e-96	291
MS.gene30123.t1	MTR_5g038870	48.333	300	141	4	41	327	62	360	1.07e-93	284
MS.gene30123.t1	MTR_2g096950	46.823	299	143	4	41	324	60	357	6.95e-92	280
MS.gene30123.t1	MTR_3g067795	45.695	302	148	4	41	327	62	362	4.21e-90	275
MS.gene30123.t1	MTR_3g067795	45.695	302	148	4	41	327	62	362	5.70e-90	275

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30123.t1	AT2G17220	51.724	319	127	8	30	324	52	367	4.39e-102	306
MS.gene30123.t1	AT1G76360	51.125	311	136	5	29	324	135	444	4.66e-102	308
MS.gene30123.t1	AT2G17220	51.724	319	127	8	30	324	53	368	4.84e-102	306
MS.gene30123.t1	AT4G35600	45.513	312	154	5	31	327	60	370	3.66e-97	293
MS.gene30123.t1	AT4G35600	45.513	312	154	5	31	327	59	369	3.75e-97	293
MS.gene30123.t1	AT5G02290	48.161	299	139	4	41	324	54	351	6.95e-94	284
MS.gene30123.t1	AT5G02290	48.161	299	139	4	41	324	54	351	6.95e-94	284
MS.gene30123.t1	AT2G28930	46.689	302	145	4	41	327	55	355	2.48e-89	273
MS.gene30123.t1	AT2G28930	46.689	302	145	4	41	327	58	358	2.74e-89	273
MS.gene30123.t1	AT2G28930	46.689	302	145	4	41	327	66	366	6.77e-89	273

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Find 75 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGATGTGTACAGTTT+TGG	0.331284	3.2:+43066345	MS.gene30123:CDS
AAACTTCAAAAGATAATGGA+TGG	0.537309	3.2:+43066474	MS.gene30123:CDS
AAAGAAACTTCAAAAGATAA+TGG	0.371874	3.2:+43066470	MS.gene30123:CDS
AAAGATAATGGATGGAAGGT+TGG	0.473062	3.2:+43066482	MS.gene30123:CDS
AAAGTTGTCCGACTTTGGGT+TGG	0.528541	3.2:+43066026	MS.gene30123:CDS
AAATAGACCGGCTATGGAGC+AGG	0.514766	3.2:+43066578	MS.gene30123:CDS
AACCACTGCCTTGGGAAATA+AGG	0.300180	3.2:+43065744	MS.gene30123:CDS
AACGCAAAGTTGTCCGACTT+TGG	0.357753	3.2:+43066021	MS.gene30123:CDS
AAGGCTGAAGATAATGATAG+GGG	0.634596	3.2:+43065763	MS.gene30123:CDS
AAGTCTTCCCAACCCAAAGT+CGG	0.642979	3.2:-43066034	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAATATGTTAATCGGTGA+AGG	+	chr3.2:43065212-43065231	MS.gene30123:CDS	30.0%
AGAAGTCTTAACAGGTTTAA+TGG	+	chr3.2:43066380-43066399	MS.gene30123:CDS	30.0%
ATAAGGCTGAAGATAATGAT+AGG	+	chr3.2:43065761-43065780	MS.gene30123:CDS	30.0%
ATGACAATTTCAAAGGATCT+AGG	+	chr3.2:43065270-43065289	MS.gene30123:CDS	30.0%
ATGTAACCCAAAAAATAGAC+CGG	+	chr3.2:43066566-43066585	MS.gene30123:CDS	30.0%
CACTTCAAGATTCAGAAAAA+TGG	+	chr3.2:43065068-43065087	MS.gene30123:CDS	30.0%
GTTTATGAATTCATGCGAAA+GGG	+	chr3.2:43065618-43065637	MS.gene30123:CDS	30.0%
TAAGGCTGAAGATAATGATA+GGG	+	chr3.2:43065762-43065781	MS.gene30123:CDS	30.0%
TGACAATTTCAAAGGATCTA+GGG	+	chr3.2:43065271-43065290	MS.gene30123:CDS	30.0%
TTCAAGATTCAGAAAAATGG+TGG	+	chr3.2:43065071-43065090	MS.gene30123:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	43065044	43066629	43065044	ID=MS.gene30123
chr3.2	mRNA	43065044	43066629	43065044	ID=MS.gene30123.t1;Parent=MS.gene30123
chr3.2	exon	43065044	43065364	43065044	ID=MS.gene30123.t1.exon1;Parent=MS.gene30123.t1
chr3.2	CDS	43065044	43065364	43065044	ID=cds.MS.gene30123.t1;Parent=MS.gene30123.t1
chr3.2	exon	43065531	43065639	43065531	ID=MS.gene30123.t1.exon2;Parent=MS.gene30123.t1
chr3.2	CDS	43065531	43065639	43065531	ID=cds.MS.gene30123.t1;Parent=MS.gene30123.t1
chr3.2	exon	43065738	43065871	43065738	ID=MS.gene30123.t1.exon3;Parent=MS.gene30123.t1
chr3.2	CDS	43065738	43065871	43065738	ID=cds.MS.gene30123.t1;Parent=MS.gene30123.t1
chr3.2	exon	43066015	43066135	43066015	ID=MS.gene30123.t1.exon4;Parent=MS.gene30123.t1
chr3.2	CDS	43066015	43066135	43066015	ID=cds.MS.gene30123.t1;Parent=MS.gene30123.t1
chr3.2	exon	43066331	43066629	43066331	ID=MS.gene30123.t1.exon5;Parent=MS.gene30123.t1
chr3.2	CDS	43066331	43066629	43066331	ID=cds.MS.gene30123.t1;Parent=MS.gene30123.t1

Gene Sequence

>MS.gene30123

ATGGGTAACTGTTTGGTAAACTATCACTTCAAGATTCAGAAAAATGGTGGTGTGGAAGATGAGAGAAATGAAGCAGTAGATGATAGAAGCATAGCATGTGGTGGACAAATTGTGCATCCAAAAAATTTCACATTGCAAGAGTTGAGATCGGTCACAAGAAACTTCAGTACAAATATGTTAATCGGTGAAGGTGACTTCGGGAGGGTCTACAAAGGATGGATCAACAATGACAATTTCAAAGGATCTAGGGTTAATGATCGTATTTGTGTTGCTGTGAAGAGGTGTAGCCCCAAAAGCCGACATGACTTTACAGAATGGAAGGTTTGTATTCCTCCACAATGTAGGAGTGTTCTTTATAAATAGTTAGCAGTCTGGTAAATTCTCAATATACACATATAATCATACAAGAAAAAAATGAAAGTTTTAGGTTTAGTTTGAATGAAAATTTTGTTTGGTTTTATAACATACATAATATGTTTGGGTGCAGAGTGAAGTGGAGTTTTTGGGGAAATACGGTCATCCAAATCTGCTTAAACTACTTGGCTATTGCAAAGATGATGACGAATACCTGCTGGTTTATGAATTCATGCGAAAGGGTAGCATGAAAAACCACCTCTTCAGAAGTACGACATTAATTAATTAATATGTATAAGAAAATTATGTTTATGCATATGAATTGTGTGTTGTTTTCCAGGCCCGCAACCACTGCCTTGGGAAATAAGGCTGAAGATAATGATAGGGGCTGCTAGAGGTTTATGTTTCTTGCATACAACAACAAAGTCTGTTGTATATAGATACTTCAACTCCTCCAACATTTTGCTGGATGAGGTAAGCAGCATGTAATAAAGTTTAATTTTGTGATGATTTTTGAAATGTGGTGAATGCTTAACTCATCAATTATTGAGACACGACAATGTTACATGTTTTCTTACAAATTTATTGTTGATATGCAATTTTTTTTTTAATAATAGGACTATAACGCAAAGTTGTCCGACTTTGGGTTGGGAAGACTTGGGCAACCCATAGTTAAAGAGTCAGGATGCTCTCCATTGGGAACCCTTGATTACGCAGCACCCGAGTATACAACTACAGGTAAATGCCACATTAATTATTCAAACACTTTTCTTTTTGATAATTTGTTAAACACCTTGGTTTTGCAAATATTTCATGAAAATATGTTGTTATATATGCCAGATTTTCATGAAAATATTCCTCCAAAACACAAGTAATAAAATAAGTAAGGCCTGCAACACAGCAAATTATTTTATTTACATCATTAATTAACAGGTCATCTCTACGTGAAAAGCGATGTGTACAGTTTTGGAGTTGTTCTTCTAGAAGTCTTAACAGGTTTAATGGTGTACGACCAGAATAGGCTAAATGAGAAGAATTTCGTGGTGTTTGCAAAGAAGTCTCCAAGTGACGAAAAGAAACTTCAAAAGATAATGGATGGAAGGTTGGAAGGGCGGTATTCATCAACATCAGCATTTCAAATAGCCCAACTTATACTCAAATGTTTAGAATGTAACCCAAAAAATAGACCGGCTATGGAGCAGGTCTTGAAAACTTTAGAAAATGCTCAATGA

Protein sequence

>MS.gene30123.t1

MGNCLVNYHFKIQKNGGVEDERNEAVDDRSIACGGQIVHPKNFTLQELRSVTRNFSTNMLIGEGDFGRVYKGWINNDNFKGSRVNDRICVAVKRCSPKSRHDFTEWKSEVEFLGKYGHPNLLKLLGYCKDDDEYLLVYEFMRKGPQPLPWEIRLKIMIGAARGLCFLHTTTKSVVYRYFNSSNILLDEDYNAKLSDFGLGRLGQPIVKESGCSPLGTLDYAAPEYTTTGHLYVKSDVYSFGVVLLEVLTGLMVYDQNRLNEKNFVVFAKKSPSDEKKLQKIMDGRLEGRYSSTSAFQIAQLILKCLECNPKNRPAMEQVLKTLENAQ