Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30219.t1 | XP_013451264.1 | 88.1 | 318 | 30 | 1 | 1 | 318 | 100 | 409 | 4.90E-114 | 421 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30219.t1 | Q9SBV6 | 58.0 | 119 | 38 | 2 | 20 | 137 | 72 | 179 | 1.1e-24 | 115.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30219.t1 | G7ZY44 | 88.1 | 318 | 30 | 1 | 1 | 318 | 100 | 409 | 3.5e-114 | 421.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene30219.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30219.t1 | MTR_6g017055 | 94.340 | 318 | 10 | 2 | 1 | 318 | 100 | 409 | 0.0 | 616 |
| MS.gene30219.t1 | MTR_7g018500 | 47.368 | 323 | 111 | 16 | 1 | 312 | 93 | 367 | 9.91e-54 | 180 |
| MS.gene30219.t1 | MTR_1g103380 | 37.830 | 341 | 135 | 12 | 9 | 302 | 175 | 485 | 3.14e-34 | 130 |
| MS.gene30219.t1 | MTR_4g111935 | 44.444 | 153 | 70 | 3 | 23 | 173 | 128 | 267 | 6.87e-29 | 114 |
| MS.gene30219.t1 | MTR_4g079580 | 52.239 | 67 | 32 | 0 | 21 | 87 | 16 | 82 | 5.19e-17 | 80.9 |
| MS.gene30219.t1 | MTR_6g015350 | 43.810 | 105 | 54 | 3 | 28 | 131 | 50 | 150 | 1.92e-16 | 79.0 |
| MS.gene30219.t1 | MTR_2g090960 | 52.308 | 65 | 31 | 0 | 21 | 85 | 18 | 82 | 2.08e-16 | 79.0 |
| MS.gene30219.t1 | MTR_2g078200 | 58.333 | 60 | 25 | 0 | 27 | 86 | 20 | 79 | 8.01e-16 | 77.0 |
| MS.gene30219.t1 | MTR_8g463380 | 50.769 | 65 | 32 | 0 | 21 | 85 | 48 | 112 | 1.78e-15 | 77.0 |
| MS.gene30219.t1 | MTR_7g015010 | 41.237 | 97 | 53 | 2 | 28 | 123 | 58 | 151 | 1.74e-14 | 73.6 |
| MS.gene30219.t1 | MTR_3g026050 | 51.724 | 58 | 28 | 0 | 28 | 85 | 58 | 115 | 1.60e-12 | 67.8 |
| MS.gene30219.t1 | MTR_4g109660 | 48.276 | 58 | 30 | 0 | 28 | 85 | 57 | 114 | 6.91e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30219.t1 | AT1G67260 | 47.059 | 153 | 71 | 3 | 23 | 170 | 83 | 230 | 2.88e-31 | 120 |
| MS.gene30219.t1 | AT1G67260 | 47.059 | 153 | 71 | 3 | 23 | 170 | 83 | 230 | 2.88e-31 | 120 |
| MS.gene30219.t1 | AT1G67260 | 47.059 | 153 | 71 | 3 | 23 | 170 | 83 | 230 | 3.38e-31 | 120 |
| MS.gene30219.t1 | AT1G68800 | 69.863 | 73 | 19 | 1 | 27 | 99 | 112 | 181 | 2.95e-25 | 104 |
| MS.gene30219.t1 | AT1G68800 | 69.863 | 73 | 19 | 1 | 27 | 99 | 112 | 181 | 3.01e-25 | 104 |
| MS.gene30219.t1 | AT3G18550 | 39.103 | 156 | 85 | 4 | 23 | 170 | 144 | 297 | 3.52e-23 | 99.4 |
| MS.gene30219.t1 | AT3G18550 | 38.125 | 160 | 85 | 4 | 23 | 170 | 144 | 301 | 2.55e-22 | 97.1 |
| MS.gene30219.t1 | AT3G18550 | 38.125 | 160 | 85 | 4 | 23 | 170 | 144 | 301 | 3.04e-22 | 96.7 |
| MS.gene30219.t1 | AT3G18550 | 38.125 | 160 | 85 | 4 | 23 | 170 | 144 | 301 | 3.04e-22 | 96.7 |
| MS.gene30219.t1 | AT1G53230 | 59.016 | 61 | 25 | 0 | 27 | 87 | 49 | 109 | 1.01e-17 | 83.6 |
| MS.gene30219.t1 | AT1G53230 | 59.016 | 61 | 25 | 0 | 27 | 87 | 49 | 109 | 1.01e-17 | 83.6 |
| MS.gene30219.t1 | AT4G18390 | 34.211 | 152 | 64 | 3 | 28 | 171 | 43 | 166 | 3.64e-16 | 78.6 |
| MS.gene30219.t1 | AT4G18390 | 34.211 | 152 | 64 | 3 | 28 | 171 | 43 | 166 | 3.64e-16 | 78.6 |
| MS.gene30219.t1 | AT2G31070 | 57.627 | 59 | 25 | 0 | 27 | 85 | 29 | 87 | 3.86e-16 | 78.6 |
| MS.gene30219.t1 | AT1G30210 | 56.897 | 58 | 25 | 0 | 28 | 85 | 51 | 108 | 5.35e-16 | 77.8 |
| MS.gene30219.t1 | AT1G30210 | 56.897 | 58 | 25 | 0 | 28 | 85 | 51 | 108 | 5.35e-16 | 77.8 |
| MS.gene30219.t1 | AT3G15030 | 54.098 | 61 | 28 | 0 | 27 | 87 | 45 | 105 | 1.36e-15 | 77.4 |
| MS.gene30219.t1 | AT3G15030 | 54.098 | 61 | 28 | 0 | 27 | 87 | 45 | 105 | 1.36e-15 | 77.4 |
| MS.gene30219.t1 | AT3G15030 | 54.098 | 61 | 28 | 0 | 27 | 87 | 45 | 105 | 1.36e-15 | 77.4 |
| MS.gene30219.t1 | AT3G15030 | 54.098 | 61 | 28 | 0 | 27 | 87 | 45 | 105 | 1.36e-15 | 77.4 |
| MS.gene30219.t1 | AT3G02150 | 53.448 | 58 | 27 | 0 | 28 | 85 | 75 | 132 | 6.42e-14 | 71.2 |
| MS.gene30219.t1 | AT3G02150 | 53.448 | 58 | 27 | 0 | 28 | 85 | 75 | 132 | 1.04e-13 | 71.2 |
| MS.gene30219.t1 | AT5G60970 | 50.000 | 58 | 29 | 0 | 28 | 85 | 64 | 121 | 1.65e-12 | 67.8 |
| MS.gene30219.t1 | AT5G08070 | 39.773 | 88 | 47 | 2 | 28 | 110 | 34 | 120 | 2.04e-11 | 63.5 |
| MS.gene30219.t1 | AT5G08070 | 39.773 | 88 | 47 | 2 | 28 | 110 | 34 | 120 | 2.04e-11 | 63.5 |
Find 58 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAAATTCATCTCCAAAT+TGG | 0.181237 | 6.3:+12650741 | MS.gene30219:CDS |
| TCCCAATTTGGAGATGAATT+TGG | 0.249636 | 6.3:-12650743 | None:intergenic |
| AGAATTATTGGTAGCAATTT+CGG | 0.262708 | 6.3:-12650276 | None:intergenic |
| AAAATCTAAGAAAGCAATTA+AGG | 0.291671 | 6.3:+12650166 | MS.gene30219:CDS |
| ATAACATTAAAATCATTTCT+TGG | 0.292170 | 6.3:-12650569 | None:intergenic |
| AATTGGGATGCTAGTAATAA+TGG | 0.323689 | 6.3:+12650758 | MS.gene30219:CDS |
| TTATTACTAGCATCCCAATT+TGG | 0.332918 | 6.3:-12650755 | None:intergenic |
| TTCGATCTTCAAGACATGTT+AGG | 0.334610 | 6.3:+12650104 | MS.gene30219:CDS |
| AAACTTGTTGATGATTCCTT+AGG | 0.334977 | 6.3:-12650692 | None:intergenic |
| CGGTTTCTTTGTGAGGAAAC+AGG | 0.347458 | 6.3:-12649991 | None:intergenic |
| AAGAATCAATTGTGATTAAG+AGG | 0.356771 | 6.3:+12650594 | MS.gene30219:CDS |
| GCCAAATTCATCTCCAAATT+GGG | 0.359624 | 6.3:+12650742 | MS.gene30219:CDS |
| CTTGGTGGTTCTTCTCACTA+TGG | 0.377341 | 6.3:+12649963 | MS.gene30219:CDS |
| CTGTGTCGGTCTTTCTTCAC+CGG | 0.395195 | 6.3:-12650011 | None:intergenic |
| AAGCTAGCAACACACTTGAT+TGG | 0.410299 | 6.3:+12650135 | MS.gene30219:CDS |
| GTAACAAGATCTCCAACATA+AGG | 0.410529 | 6.3:+12650450 | MS.gene30219:CDS |
| CTGTTTCCTCACAAAGAAAC+CGG | 0.419889 | 6.3:+12649992 | MS.gene30219:CDS |
| TAACAAGATCTCCAACATAA+GGG | 0.432336 | 6.3:+12650451 | MS.gene30219:CDS |
| AGAGTTGAAGGATCTTGTTT+AGG | 0.436434 | 6.3:-12649942 | None:intergenic |
| TCCAAATCTTTGGAAAATCA+TGG | 0.441718 | 6.3:+12651899 | MS.gene30219:CDS |
| TCGATCTTCAAGACATGTTA+GGG | 0.442491 | 6.3:+12650105 | MS.gene30219:CDS |
| TTCAAACCTAAAACAACAAA+AGG | 0.450238 | 6.3:+12650298 | MS.gene30219:CDS |
| GAAGAACCACCAAGAGTTGA+AGG | 0.453282 | 6.3:-12649954 | None:intergenic |
| GAAGGATCTTGTTTAGGCAT+TGG | 0.460193 | 6.3:-12649936 | None:intergenic |
| AAACAAGATCCTTCAACTCT+TGG | 0.465675 | 6.3:+12649945 | MS.gene30219:CDS |
| CAAGATCCTTCAACTCTTGG+TGG | 0.475230 | 6.3:+12649948 | MS.gene30219:CDS |
| AGAAACAACAATAGTGAAGT+TGG | 0.485365 | 6.3:+12650209 | MS.gene30219:CDS |
| AACTTGTTGATGATTCCTTA+GGG | 0.488719 | 6.3:-12650691 | None:intergenic |
| AACAAGATCTCCAACATAAG+GGG | 0.504539 | 6.3:+12650452 | MS.gene30219:CDS |
| GCCAGCATGAATCTCTCTAC+AGG | 0.519767 | 6.3:+12650818 | MS.gene30219:CDS |
| AGCAAGATTTACACTTCTCA+AGG | 0.521241 | 6.3:+12650032 | MS.gene30219:CDS |
| TCTTCACCGGTTTCTTTGTG+AGG | 0.525305 | 6.3:-12649998 | None:intergenic |
| ATACTAATGTAGACGTGGAT+TGG | 0.530503 | 6.3:-12651932 | None:intergenic |
| TGTTAGAGCAAGTAAGATGA+AGG | 0.539973 | 6.3:+12650385 | MS.gene30219:CDS |
| CAAGTAAGATGAAGGAGTCA+AGG | 0.547238 | 6.3:+12650393 | MS.gene30219:CDS |
| CCAAATCTTTGGAAAATCAT+GGG | 0.551226 | 6.3:+12651900 | MS.gene30219:CDS |
| TTCGGAATCTTCGCAATCTG+AGG | 0.558441 | 6.3:-12650258 | None:intergenic |
| TTACTTGCTCTAACACAAGC+AGG | 0.558716 | 6.3:-12650377 | None:intergenic |
| AAACAACAAAAGGAAGGTGC+AGG | 0.560333 | 6.3:+12650308 | MS.gene30219:CDS |
| CTCAAGGTTTGAGAGATCGA+AGG | 0.562321 | 6.3:+12650048 | MS.gene30219:CDS |
| AAGTAAGATGAAGGAGTCAA+GGG | 0.565392 | 6.3:+12650394 | MS.gene30219:CDS |
| GAAGTTGAAACCATCCATGA+TGG | 0.569011 | 6.3:+12650616 | MS.gene30219:CDS |
| AAAAGCAAGAGCAAGAGCAA+GGG | 0.571859 | 6.3:+12650418 | MS.gene30219:CDS |
| TCAAAATCATGTGATCCCTA+AGG | 0.574457 | 6.3:+12650676 | MS.gene30219:CDS |
| ACCTGTAGAGAGATTCATGC+TGG | 0.574595 | 6.3:-12650819 | None:intergenic |
| AAGTGTAAATCTTGCTGTGT+CGG | 0.576609 | 6.3:-12650025 | None:intergenic |
| TCAACAAGTTTCAACAACAA+TGG | 0.583307 | 6.3:+12650704 | MS.gene30219:CDS |
| TCAAGGTTTGAGAGATCGAA+GGG | 0.597780 | 6.3:+12650049 | MS.gene30219:CDS |
| AACCTAAAACAACAAAAGGA+AGG | 0.605705 | 6.3:+12650302 | MS.gene30219:CDS |
| GTTTGAGAGATCGAAGGGTG+AGG | 0.608622 | 6.3:+12650054 | MS.gene30219:CDS |
| AACAACAATAGTGAAGTTGG+TGG | 0.611334 | 6.3:+12650212 | MS.gene30219:CDS |
| GTTGTTGTGAGTAGTAGTGA+AGG | 0.624220 | 6.3:+12650545 | MS.gene30219:CDS |
| ACAAGATCTCCAACATAAGG+GGG | 0.625167 | 6.3:+12650453 | MS.gene30219:CDS |
| CTAACATACTAATGTAGACG+TGG | 0.657496 | 6.3:-12651937 | None:intergenic |
| TGATGAGAAACCATCATGGA+TGG | 0.661344 | 6.3:-12650626 | None:intergenic |
| AATCTTTGGAAAATCATGGG+AGG | 0.671370 | 6.3:+12651903 | MS.gene30219:CDS |
| ATGATGATGAGAAACCATCA+TGG | 0.672178 | 6.3:-12650630 | None:intergenic |
| CAAGATCTCCAACATAAGGG+GGG | 0.714806 | 6.3:+12650454 | MS.gene30219:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATACAAAATTTTGA+AGG | + | chr6.3:12651668-12651687 | MS.gene30219:intron | 10.0% |
| !!! | GTCTTATTTAAATTTAAATA+TGG | - | chr6.3:12651829-12651848 | None:intergenic | 10.0% |
| !!! | TAAAAAAATTCTTCAATTTT+TGG | + | chr6.3:12651375-12651394 | MS.gene30219:intron | 10.0% |
| !! | AATTATCAACGAAAATTAAA+AGG | - | chr6.3:12651022-12651041 | None:intergenic | 15.0% |
| !! | ATAACATTAAAATCATTTCT+TGG | - | chr6.3:12650572-12650591 | None:intergenic | 15.0% |
| !! | ATTATCAACGAAAATTAAAA+GGG | - | chr6.3:12651021-12651040 | None:intergenic | 15.0% |
| !! | TGAAATTAGAAAATTTCATA+GGG | + | chr6.3:12651785-12651804 | MS.gene30219:intron | 15.0% |
| !! | TTAAATTTAAATAAGACCTA+GGG | + | chr6.3:12651832-12651851 | MS.gene30219:intron | 15.0% |
| !! | TTGAAATTAGAAAATTTCAT+AGG | + | chr6.3:12651784-12651803 | MS.gene30219:intron | 15.0% |
| !! | TTTAAATTTAAATAAGACCT+AGG | + | chr6.3:12651831-12651850 | MS.gene30219:intron | 15.0% |
| !!! | TTTTTTTTAATACTTAGAGT+TGG | - | chr6.3:12650969-12650988 | None:intergenic | 15.0% |
| !! | AAAATCTAAGAAAGCAATTA+AGG | + | chr6.3:12650166-12650185 | MS.gene30219:CDS | 20.0% |
| !! | TAAATTTAAATAAGACCTAG+GGG | + | chr6.3:12651833-12651852 | MS.gene30219:intron | 20.0% |
| !!! | ACATGATTTAATTTAAAAGC+AGG | - | chr6.3:12651434-12651453 | None:intergenic | 20.0% |
| !!! | CATGATTTAATTTAAAAGCA+GGG | - | chr6.3:12651433-12651452 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTGAAGAATTAT+TGG | - | chr6.3:12650291-12650310 | None:intergenic | 20.0% |
| ! | AAGAATCAATTGTGATTAAG+AGG | + | chr6.3:12650594-12650613 | MS.gene30219:CDS | 25.0% |
| ! | AGCAGAAAAATGAAGTTAAT+TGG | - | chr6.3:12651224-12651243 | None:intergenic | 25.0% |
| ! | ATGATATATAGTGATCTAAG+TGG | + | chr6.3:12651862-12651881 | MS.gene30219:intron | 25.0% |
| ! | CATATTTAACCCATTAAAGA+TGG | - | chr6.3:12651312-12651331 | None:intergenic | 25.0% |
| ! | TTAAAAGGGAAAAATCACTA+TGG | - | chr6.3:12651007-12651026 | None:intergenic | 25.0% |
| ! | TTCAAACCTAAAACAACAAA+AGG | + | chr6.3:12650298-12650317 | MS.gene30219:CDS | 25.0% |
| !! | ACATGATTTAACTTAAATGC+AGG | + | chr6.3:12651695-12651714 | MS.gene30219:intron | 25.0% |
| !! | AGAATTATTGGTAGCAATTT+CGG | - | chr6.3:12650279-12650298 | None:intergenic | 25.0% |
| !! | ATCTAAGTGGTAATTTTTCA+GGG | + | chr6.3:12651875-12651894 | MS.gene30219:intron | 25.0% |
| !! | CCATCTTTTATACTCAAAAA+AGG | - | chr6.3:12651189-12651208 | None:intergenic | 25.0% |
| !! | TTGCCGAAGAAAATTTTTAA+GGG | - | chr6.3:12651402-12651421 | None:intergenic | 25.0% |
| !! | TTTCTAGTACCATCTTTAAT+GGG | + | chr6.3:12651300-12651319 | MS.gene30219:intron | 25.0% |
| !!! | CCTTTTTTGAGTATAAAAGA+TGG | + | chr6.3:12651186-12651205 | MS.gene30219:intron | 25.0% |
| !!! | CTAGTACTTCTTTTAGAAAA+GGG | + | chr6.3:12651273-12651292 | MS.gene30219:intron | 25.0% |
| !!! | TAATGGGTTAAATATGTTCT+TGG | + | chr6.3:12651316-12651335 | MS.gene30219:intron | 25.0% |
| !!! | TCTAGTACTTCTTTTAGAAA+AGG | + | chr6.3:12651272-12651291 | MS.gene30219:intron | 25.0% |
| !!! | TTTTCTAGTACCATCTTTAA+TGG | + | chr6.3:12651299-12651318 | MS.gene30219:intron | 25.0% |
| AACCTAAAACAACAAAAGGA+AGG | + | chr6.3:12650302-12650321 | MS.gene30219:CDS | 30.0% | |
| AATTGGGATGCTAGTAATAA+TGG | + | chr6.3:12650758-12650777 | MS.gene30219:CDS | 30.0% | |
| AGAAACAACAATAGTGAAGT+TGG | + | chr6.3:12650209-12650228 | MS.gene30219:CDS | 30.0% | |
| ATATATCATCAAAATCCCCT+AGG | - | chr6.3:12651851-12651870 | None:intergenic | 30.0% | |
| TAACAAGATCTCCAACATAA+GGG | + | chr6.3:12650451-12650470 | MS.gene30219:CDS | 30.0% | |
| TCAACAAGTTTCAACAACAA+TGG | + | chr6.3:12650704-12650723 | MS.gene30219:CDS | 30.0% | |
| TTATTACTAGCATCCCAATT+TGG | - | chr6.3:12650758-12650777 | None:intergenic | 30.0% | |
| ! | AAAGTTGTGACGAATTTTTG+AGG | + | chr6.3:12651723-12651742 | MS.gene30219:intron | 30.0% |
| ! | AAATTTTCTTCGGCAACTTA+TGG | + | chr6.3:12651406-12651425 | MS.gene30219:intron | 30.0% |
| ! | AAGTTGTGACGAATTTTTGA+GGG | + | chr6.3:12651724-12651743 | MS.gene30219:intron | 30.0% |
| ! | CAAAAATTCGTCACAACTTT+TGG | - | chr6.3:12651723-12651742 | None:intergenic | 30.0% |
| ! | CCAAATCTTTGGAAAATCAT+GGG | + | chr6.3:12651900-12651919 | MS.gene30219:CDS | 30.0% |
| ! | GATCTAAGTGGTAATTTTTC+AGG | + | chr6.3:12651874-12651893 | MS.gene30219:intron | 30.0% |
| ! | GGTCCCTTAAAAATTTTCTT+CGG | + | chr6.3:12651396-12651415 | MS.gene30219:intron | 30.0% |
| ! | GTTGCCGAAGAAAATTTTTA+AGG | - | chr6.3:12651403-12651422 | None:intergenic | 30.0% |
| ! | TCCAAATCTTTGGAAAATCA+TGG | + | chr6.3:12651899-12651918 | MS.gene30219:CDS | 30.0% |
| !! | AAACTTGTTGATGATTCCTT+AGG | - | chr6.3:12650695-12650714 | None:intergenic | 30.0% |
| !! | AACTTGTTGATGATTCCTTA+GGG | - | chr6.3:12650694-12650713 | None:intergenic | 30.0% |
| !! | ACATGATTTTGATGGTAATG+AGG | - | chr6.3:12650668-12650687 | None:intergenic | 30.0% |
| AAACAAGATCCTTCAACTCT+TGG | + | chr6.3:12649945-12649964 | MS.gene30219:CDS | 35.0% | |
| AACAACAATAGTGAAGTTGG+TGG | + | chr6.3:12650212-12650231 | MS.gene30219:CDS | 35.0% | |
| AACAAGATCTCCAACATAAG+GGG | + | chr6.3:12650452-12650471 | MS.gene30219:CDS | 35.0% | |
| AAGTAAGATGAAGGAGTCAA+GGG | + | chr6.3:12650394-12650413 | MS.gene30219:CDS | 35.0% | |
| AGCAAGATTTACACTTCTCA+AGG | + | chr6.3:12650032-12650051 | MS.gene30219:CDS | 35.0% | |
| GCCAAATTCATCTCCAAATT+GGG | + | chr6.3:12650742-12650761 | MS.gene30219:CDS | 35.0% | |
| GTAACAAGATCTCCAACATA+AGG | + | chr6.3:12650450-12650469 | MS.gene30219:CDS | 35.0% | |
| TCAAAATCATGTGATCCCTA+AGG | + | chr6.3:12650676-12650695 | MS.gene30219:CDS | 35.0% | |
| TCCCAATTTGGAGATGAATT+TGG | - | chr6.3:12650746-12650765 | None:intergenic | 35.0% | |
| TCGATCTTCAAGACATGTTA+GGG | + | chr6.3:12650105-12650124 | MS.gene30219:CDS | 35.0% | |
| TGCCAAATTCATCTCCAAAT+TGG | + | chr6.3:12650741-12650760 | MS.gene30219:CDS | 35.0% | |
| TGTTAGAGCAAGTAAGATGA+AGG | + | chr6.3:12650385-12650404 | MS.gene30219:CDS | 35.0% | |
| TTCGATCTTCAAGACATGTT+AGG | + | chr6.3:12650104-12650123 | MS.gene30219:CDS | 35.0% | |
| ! | AAGTGTAAATCTTGCTGTGT+CGG | - | chr6.3:12650028-12650047 | None:intergenic | 35.0% |
| ! | AATCTTTGGAAAATCATGGG+AGG | + | chr6.3:12651903-12651922 | MS.gene30219:CDS | 35.0% |
| ! | AGAGTTGAAGGATCTTGTTT+AGG | - | chr6.3:12649945-12649964 | None:intergenic | 35.0% |
| ! | ATGATGATGAGAAACCATCA+TGG | - | chr6.3:12650633-12650652 | None:intergenic | 35.0% |
| ! | CCCATGATTTTCCAAAGATT+TGG | - | chr6.3:12651903-12651922 | None:intergenic | 35.0% |
| ! | CTTTTCAACTTCTTCTCTTC+AGG | - | chr6.3:12650341-12650360 | None:intergenic | 35.0% |
| ! | TAGGGATCACATGATTTTGA+TGG | - | chr6.3:12650676-12650695 | None:intergenic | 35.0% |
| !! | TGATTTTGATGGTAATGAGG+AGG | - | chr6.3:12650665-12650684 | None:intergenic | 35.0% |
| !!! | CACCTTCCTTTTGTTGTTTT+AGG | - | chr6.3:12650307-12650326 | None:intergenic | 35.0% |
| AAAAAGCAAGAGCAAGAGCA+AGG | + | chr6.3:12650417-12650436 | MS.gene30219:CDS | 40.0% | |
| AAAAGCAAGAGCAAGAGCAA+GGG | + | chr6.3:12650418-12650437 | MS.gene30219:CDS | 40.0% | |
| AAGCTAGCAACACACTTGAT+TGG | + | chr6.3:12650135-12650154 | MS.gene30219:CDS | 40.0% | |
| ACAAAAAGTGGAGCGATTAG+TGG | - | chr6.3:12650792-12650811 | None:intergenic | 40.0% | |
| ACAAGATCTCCAACATAAGG+GGG | + | chr6.3:12650453-12650472 | MS.gene30219:CDS | 40.0% | |
| CAAGTAAGATGAAGGAGTCA+AGG | + | chr6.3:12650393-12650412 | MS.gene30219:CDS | 40.0% | |
| CTGTTTCCTCACAAAGAAAC+CGG | + | chr6.3:12649992-12650011 | MS.gene30219:CDS | 40.0% | |
| GAAGTTGAAACCATCCATGA+TGG | + | chr6.3:12650616-12650635 | MS.gene30219:CDS | 40.0% | |
| GTTGTTGTGAGTAGTAGTGA+AGG | + | chr6.3:12650545-12650564 | MS.gene30219:CDS | 40.0% | |
| TCAAGGTTTGAGAGATCGAA+GGG | + | chr6.3:12650049-12650068 | MS.gene30219:CDS | 40.0% | |
| TGATGAGAAACCATCATGGA+TGG | - | chr6.3:12650629-12650648 | None:intergenic | 40.0% | |
| TTACTTGCTCTAACACAAGC+AGG | - | chr6.3:12650380-12650399 | None:intergenic | 40.0% | |
| ! | AAACAACAAAAGGAAGGTGC+AGG | + | chr6.3:12650308-12650327 | MS.gene30219:CDS | 40.0% |
| !! | TTTTCAGGGCTCCAAATCTT+TGG | + | chr6.3:12651889-12651908 | MS.gene30219:intron | 40.0% |
| ACCTGTAGAGAGATTCATGC+TGG | - | chr6.3:12650822-12650841 | None:intergenic | 45.0% | |
| CAAGATCCTTCAACTCTTGG+TGG | + | chr6.3:12649948-12649967 | MS.gene30219:CDS | 45.0% | |
| CAAGATCTCCAACATAAGGG+GGG | + | chr6.3:12650454-12650473 | MS.gene30219:CDS | 45.0% | |
| CGGTTTCTTTGTGAGGAAAC+AGG | - | chr6.3:12649994-12650013 | None:intergenic | 45.0% | |
| CTCAAGGTTTGAGAGATCGA+AGG | + | chr6.3:12650048-12650067 | MS.gene30219:CDS | 45.0% | |
| GAAGAACCACCAAGAGTTGA+AGG | - | chr6.3:12649957-12649976 | None:intergenic | 45.0% | |
| GCTGGCTATAGCACAAAAAG+TGG | - | chr6.3:12650804-12650823 | None:intergenic | 45.0% | |
| TTCGGAATCTTCGCAATCTG+AGG | - | chr6.3:12650261-12650280 | None:intergenic | 45.0% | |
| ! | CTTGGTGGTTCTTCTCACTA+TGG | + | chr6.3:12649963-12649982 | MS.gene30219:CDS | 45.0% |
| !! | TCTTCACCGGTTTCTTTGTG+AGG | - | chr6.3:12650001-12650020 | None:intergenic | 45.0% |
| !!! | TAAATTTTAACTTTTTTTTT+TGG | - | chr6.3:12651090-12651109 | None:intergenic | 5.0% |
| !!! | TCTTATTTAAATTTAAATAT+GGG | - | chr6.3:12651828-12651847 | None:intergenic | 5.0% |
| GCCAGCATGAATCTCTCTAC+AGG | + | chr6.3:12650818-12650837 | MS.gene30219:CDS | 50.0% | |
| GTTTGAGAGATCGAAGGGTG+AGG | + | chr6.3:12650054-12650073 | MS.gene30219:CDS | 50.0% | |
| TTCTTGCACCCCCCTTATGT+TGG | - | chr6.3:12650465-12650484 | None:intergenic | 50.0% | |
| ! | CTGTGTCGGTCTTTCTTCAC+CGG | - | chr6.3:12650014-12650033 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 12649939 | 12651951 | 12649939 | ID=MS.gene30219 |
| chr6.3 | mRNA | 12649939 | 12651951 | 12649939 | ID=MS.gene30219.t1;Parent=MS.gene30219 |
| chr6.3 | exon | 12649939 | 12650839 | 12649939 | ID=MS.gene30219.t1.exon1;Parent=MS.gene30219.t1 |
| chr6.3 | CDS | 12649939 | 12650839 | 12649939 | ID=cds.MS.gene30219.t1;Parent=MS.gene30219.t1 |
| chr6.3 | exon | 12651896 | 12651951 | 12651896 | ID=MS.gene30219.t1.exon2;Parent=MS.gene30219.t1 |
| chr6.3 | CDS | 12651896 | 12651951 | 12651896 | ID=cds.MS.gene30219.t1;Parent=MS.gene30219.t1 |
| Gene Sequence |
| Protein sequence |
