Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30415.t1 | XP_024629356.1 | 44.7 | 727 | 29 | 1 | 1 | 354 | 1 | 727 | 5.20E-140 | 507.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30415.t1 | Q9SZL8 | 32.5 | 191 | 124 | 3 | 7 | 193 | 70 | 259 | 1.3e-19 | 99.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30415.t1 | A0A396JHA3 | 90.0 | 190 | 19 | 0 | 1 | 190 | 1 | 190 | 1.7e-92 | 349.4 |
| MS.gene30415.t1 | A0A396JHA3 | 91.2 | 34 | 3 | 0 | 187 | 220 | 560 | 593 | 2.0e-08 | 70.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene30415.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30415.t1 | MTR_5g039760 | 63.351 | 191 | 45 | 2 | 1 | 190 | 1 | 167 | 2.25e-79 | 243 |
| MS.gene30415.t1 | MTR_7g074790 | 56.140 | 228 | 72 | 3 | 1 | 219 | 1 | 209 | 8.30e-79 | 243 |
| MS.gene30415.t1 | MTR_7g074790 | 37.097 | 124 | 60 | 4 | 244 | 351 | 97 | 218 | 9.55e-12 | 64.7 |
| MS.gene30415.t1 | MTR_7g061980 | 84.034 | 119 | 19 | 0 | 1 | 119 | 1 | 119 | 1.50e-65 | 205 |
| MS.gene30415.t1 | MTR_0402s0040 | 43.646 | 181 | 97 | 4 | 10 | 187 | 26 | 204 | 7.92e-35 | 135 |
| MS.gene30415.t1 | MTR_4g069880 | 70.588 | 68 | 20 | 0 | 1 | 68 | 1 | 68 | 8.54e-25 | 97.1 |
| MS.gene30415.t1 | MTR_4g102720 | 33.333 | 171 | 80 | 2 | 5 | 175 | 2 | 138 | 1.60e-24 | 101 |
| MS.gene30415.t1 | MTR_3g058090 | 44.954 | 109 | 36 | 2 | 187 | 295 | 22 | 106 | 2.27e-19 | 83.2 |
| MS.gene30415.t1 | MTR_5g015480 | 43.089 | 123 | 66 | 3 | 10 | 129 | 56 | 177 | 1.07e-16 | 80.1 |
| MS.gene30415.t1 | MTR_2g099430 | 46.591 | 88 | 45 | 2 | 33 | 119 | 26 | 112 | 7.93e-16 | 73.6 |
| MS.gene30415.t1 | MTR_2g070590 | 42.453 | 106 | 57 | 3 | 10 | 112 | 17 | 121 | 1.64e-15 | 72.8 |
| MS.gene30415.t1 | MTR_7g113010 | 40.157 | 127 | 60 | 3 | 10 | 134 | 457 | 569 | 6.10e-15 | 77.0 |
| MS.gene30415.t1 | MTR_6g051425 | 29.189 | 185 | 119 | 5 | 9 | 183 | 13 | 195 | 1.36e-14 | 74.7 |
| MS.gene30415.t1 | MTR_4g117620 | 84.848 | 33 | 5 | 0 | 319 | 351 | 35 | 67 | 8.92e-14 | 66.6 |
| MS.gene30415.t1 | MTR_1g019850 | 31.915 | 141 | 87 | 3 | 3 | 141 | 63 | 196 | 1.09e-12 | 67.8 |
| MS.gene30415.t1 | MTR_2g014100 | 25.481 | 208 | 132 | 5 | 3 | 190 | 40 | 244 | 4.07e-12 | 66.2 |
| MS.gene30415.t1 | MTR_0558s0020 | 25.238 | 210 | 134 | 5 | 3 | 192 | 32 | 238 | 7.62e-12 | 66.2 |
| MS.gene30415.t1 | MTR_1g083640 | 24.286 | 210 | 136 | 5 | 3 | 192 | 47 | 253 | 1.18e-11 | 65.5 |
| MS.gene30415.t1 | MTR_1g013060 | 28.488 | 172 | 117 | 3 | 5 | 170 | 19 | 190 | 8.60e-11 | 62.0 |
| MS.gene30415.t1 | MTR_1g057920 | 42.222 | 90 | 48 | 3 | 10 | 96 | 34 | 122 | 9.25e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30415.t1 | AT4G38180 | 34.031 | 191 | 121 | 5 | 7 | 193 | 70 | 259 | 5.27e-20 | 93.2 |
| MS.gene30415.t1 | AT5G18960 | 36.842 | 114 | 52 | 4 | 9 | 116 | 42 | 141 | 1.42e-12 | 70.1 |
| MS.gene30415.t1 | AT5G18960 | 36.842 | 114 | 52 | 4 | 9 | 116 | 42 | 141 | 1.42e-12 | 70.1 |
| MS.gene30415.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 3.55e-12 | 68.9 |
| MS.gene30415.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 3.55e-12 | 68.9 |
| MS.gene30415.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 3.55e-12 | 68.9 |
| MS.gene30415.t1 | AT4G15090 | 25.000 | 196 | 142 | 5 | 3 | 195 | 44 | 237 | 2.80e-11 | 65.9 |
| MS.gene30415.t1 | AT4G15090 | 25.000 | 196 | 142 | 5 | 3 | 195 | 44 | 237 | 2.80e-11 | 65.9 |
| MS.gene30415.t1 | AT4G15090 | 25.000 | 196 | 142 | 5 | 3 | 195 | 44 | 237 | 2.80e-11 | 65.9 |
| MS.gene30415.t1 | AT4G15090 | 25.000 | 196 | 142 | 5 | 3 | 195 | 44 | 237 | 2.80e-11 | 65.9 |
| MS.gene30415.t1 | AT4G15090 | 25.000 | 196 | 142 | 5 | 3 | 195 | 44 | 237 | 2.80e-11 | 65.9 |
Find 86 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGAGGCTAGTAAATTT+TGG | 0.221773 | 8.1:-78303556 | MS.gene30415:CDS |
| TCAAATCCCATTCCAATCTT+TGG | 0.252212 | 8.1:+78303584 | None:intergenic |
| ACATCCGAACTCACAATTTC+TGG | 0.277637 | 8.1:+78301678 | None:intergenic |
| TTATGGCCGCTGCAGGTGCC+TGG | 0.293604 | 8.1:-78301007 | MS.gene30415:CDS |
| TTATGCAAGCAAAGGGGTTC+AGG | 0.309393 | 8.1:-78301656 | MS.gene30415:CDS |
| TTGTTATTAATGTAGGCAAT+AGG | 0.319287 | 8.1:-78301122 | MS.gene30415:intron |
| TGGCTAATGACTCTGGATTA+AGG | 0.326845 | 8.1:-78303208 | MS.gene30415:CDS |
| TGGAATGGGATTTGATTCTA+TGG | 0.332757 | 8.1:-78303576 | MS.gene30415:CDS |
| TGCATTCATTCCATTCAAAT+AGG | 0.333189 | 8.1:+78301090 | None:intergenic |
| TCGCTTAATTCTCTTTGAAC+CGG | 0.337380 | 8.1:+78301626 | None:intergenic |
| TGTTATTAATGTAGGCAATA+GGG | 0.344986 | 8.1:-78301121 | MS.gene30415:intron |
| TGGCTCAAGTTTCTTGATAA+TGG | 0.349009 | 8.1:-78301777 | MS.gene30415:CDS |
| ATTCGATTTCTAGACAAGTT+AGG | 0.350154 | 8.1:+78301861 | None:intergenic |
| AACTTGAGCCATTCTTCCTT+GGG | 0.383639 | 8.1:+78301789 | None:intergenic |
| AAACTTGAGCCATTCTTCCT+TGG | 0.386061 | 8.1:+78301788 | None:intergenic |
| TTTAGGGGAAGGGAGGTTGA+AGG | 0.387913 | 8.1:-78301888 | MS.gene30415:CDS |
| TCTCTGAAATTTGTAGATCA+TGG | 0.390016 | 8.1:+78303291 | None:intergenic |
| TGACATGTTCAAGAAAATAA+TGG | 0.392454 | 8.1:-78301748 | MS.gene30415:CDS |
| ATCTTGCACAACGCCATAAC+GGG | 0.394237 | 8.1:+78301911 | None:intergenic |
| TATGGCCGCTGCAGGTGCCT+GGG | 0.395065 | 8.1:-78301006 | MS.gene30415:CDS |
| ATGTCGATTGGTTTGTTGTA+AGG | 0.397901 | 8.1:-78303456 | MS.gene30415:CDS |
| GCAAGCATATGAGATTGATT+TGG | 0.403796 | 8.1:-78303228 | MS.gene30415:CDS |
| ATGGACAATAACGGTGATAA+TGG | 0.410451 | 8.1:-78301708 | MS.gene30415:CDS |
| CTTGATCCTCATGAACTTGT+GGG | 0.416691 | 8.1:+78301238 | None:intergenic |
| ATTACACTTTCTCGTAAGAA+TGG | 0.418220 | 8.1:-78303350 | MS.gene30415:CDS |
| ATTGATTTGGCTAATGACTC+TGG | 0.429637 | 8.1:-78303215 | MS.gene30415:CDS |
| GTTATTAATGTAGGCAATAG+GGG | 0.433597 | 8.1:-78301120 | MS.gene30415:intron |
| AGTATGGCGTATGGCGAGAT+TGG | 0.439808 | 8.1:-78303080 | MS.gene30415:CDS |
| TGGCATCTTCAGATGATGAT+TGG | 0.443033 | 8.1:-78303610 | MS.gene30415:CDS |
| GATGATTGGAAACCAAAGAT+TGG | 0.443445 | 8.1:-78303596 | MS.gene30415:CDS |
| TGGAAACCAAAGATTGGAAT+GGG | 0.444346 | 8.1:-78303590 | MS.gene30415:CDS |
| GCTTGCTTATAGTTTCCGTA+TGG | 0.448607 | 8.1:-78303534 | MS.gene30415:CDS |
| CGCTTAATTCTCTTTGAACC+GGG | 0.451079 | 8.1:+78301627 | None:intergenic |
| TAAGCGACACAAAAGTTGTC+TGG | 0.459328 | 8.1:-78301610 | MS.gene30415:CDS |
| TTCATTCCATTCAAATAGGC+TGG | 0.465343 | 8.1:+78301094 | None:intergenic |
| GTTGTAAGGAAGGGCTAAAG+AGG | 0.472997 | 8.1:-78303442 | MS.gene30415:CDS |
| GTGTCTGTTATGGCCGCTGC+AGG | 0.473723 | 8.1:-78301014 | MS.gene30415:CDS |
| GGAACTTCACGCACAAGCTA+TGG | 0.478357 | 8.1:-78301727 | MS.gene30415:CDS |
| TTCTCGTAAGAATGGAAAGT+TGG | 0.483302 | 8.1:-78303342 | MS.gene30415:CDS |
| CAGAGACAACACACATGCTT+CGG | 0.486204 | 8.1:-78303274 | MS.gene30415:CDS |
| TTGAATGGAATGAATGCATA+GGG | 0.487076 | 8.1:-78301085 | MS.gene30415:CDS |
| CAATTACACAGCCATGCTAA+TGG | 0.488206 | 8.1:-78301214 | MS.gene30415:intron |
| TCGTCCAGAAATTGTGAGTT+CGG | 0.488854 | 8.1:-78301682 | MS.gene30415:CDS |
| ATGGCCGCTGCAGGTGCCTG+GGG | 0.492557 | 8.1:-78301005 | MS.gene30415:CDS |
| ACAAAACAGCAGCAGAAAAC+AGG | 0.492964 | 8.1:+78301035 | None:intergenic |
| GGGATTTGATTCTATGGAAG+AGG | 0.495105 | 8.1:-78303570 | MS.gene30415:CDS |
| TGGACAAGAGAAGCCCGTTA+TGG | 0.496786 | 8.1:-78301924 | MS.gene30415:CDS |
| TCGGATGTTATGCAAGCAAA+GGG | 0.497034 | 8.1:-78301663 | MS.gene30415:CDS |
| AATCTTGCACAACGCCATAA+CGG | 0.497648 | 8.1:+78301910 | None:intergenic |
| GCAGAAAACAACCTGCAAAC+CGG | 0.498164 | 8.1:+78300978 | None:intergenic |
| GAGAAAAGATATGCATATGA+AGG | 0.500242 | 8.1:-78303416 | MS.gene30415:CDS |
| CTCTAACTTCGAAGCCCATA+CGG | 0.502833 | 8.1:+78303519 | None:intergenic |
| TAAGGAAGGGCTAAAGAGGA+AGG | 0.502968 | 8.1:-78303438 | MS.gene30415:CDS |
| CGATTGGTTTGTTGTAAGGA+AGG | 0.503555 | 8.1:-78303452 | MS.gene30415:CDS |
| AAGCATCACCCAAGGAAGAA+TGG | 0.505676 | 8.1:-78301797 | MS.gene30415:CDS |
| ACTTGATCCTCATGAACTTG+TGG | 0.509737 | 8.1:+78301237 | None:intergenic |
| TATGTTTGTCTTCAAAGTCA+TGG | 0.512296 | 8.1:+78303315 | None:intergenic |
| CTTGCTTATAGTTTCCGTAT+GGG | 0.515014 | 8.1:-78303533 | MS.gene30415:CDS |
| GCGAGATTGGATGTCTTTCA+CGG | 0.526117 | 8.1:-78303067 | MS.gene30415:intron |
| CAACTTATGAGCACACAAGC+AGG | 0.527478 | 8.1:-78303170 | MS.gene30415:CDS |
| TATGCAAGCAAAGGGGTTCA+GGG | 0.531086 | 8.1:-78301655 | MS.gene30415:CDS |
| TTGGAAACCAAAGATTGGAA+TGG | 0.532585 | 8.1:-78303591 | MS.gene30415:CDS |
| TGGCCGCTGCAGGTGCCTGG+GGG | 0.550886 | 8.1:-78301004 | MS.gene30415:CDS |
| TTATTAATGTAGGCAATAGG+GGG | 0.552804 | 8.1:-78301119 | MS.gene30415:intron |
| TAGTGTATCGTCATGTCGAT+TGG | 0.553968 | 8.1:-78303468 | MS.gene30415:CDS |
| TTGATCCTCATGAACTTGTG+GGG | 0.556767 | 8.1:+78301239 | None:intergenic |
| GAGAAAGTGTAATTCTTGCA+AGG | 0.558104 | 8.1:+78303360 | None:intergenic |
| TTTGAATGGAATGAATGCAT+AGG | 0.559346 | 8.1:-78301086 | MS.gene30415:CDS |
| TTCGGATGTTATGCAAGCAA+AGG | 0.563515 | 8.1:-78301664 | MS.gene30415:CDS |
| TGTCTCTAAGTTCATTAAAG+CGG | 0.564647 | 8.1:-78301826 | MS.gene30415:CDS |
| GGCCGCTGCAGGTGCCTGGG+GGG | 0.582902 | 8.1:-78301003 | MS.gene30415:CDS |
| GATTGGTTTGTTGTAAGGAA+GGG | 0.585108 | 8.1:-78303451 | MS.gene30415:CDS |
| GCAGGGCATAGAGCTAATGT+TGG | 0.587433 | 8.1:-78303152 | MS.gene30415:CDS |
| TGATCCTCATGAACTTGTGG+GGG | 0.590826 | 8.1:+78301240 | None:intergenic |
| AAGGCAATTTGTTCTAACAT+CGG | 0.596957 | 8.1:+78303379 | None:intergenic |
| AACTTATGAGCACACAAGCA+GGG | 0.601558 | 8.1:-78303169 | MS.gene30415:CDS |
| GCACAAGCTATGGACAATAA+CGG | 0.605835 | 8.1:-78301717 | MS.gene30415:CDS |
| GGCAACTGAAGCATCACCCA+AGG | 0.632035 | 8.1:-78301805 | MS.gene30415:CDS |
| GAATGGAATGAATGCATAGG+GGG | 0.638687 | 8.1:-78301083 | MS.gene30415:CDS |
| AAGGGGTTCAGGGTACGACC+CGG | 0.640993 | 8.1:-78301645 | MS.gene30415:CDS |
| AGCTAATGTTGGATTTACAG+AGG | 0.647899 | 8.1:-78303141 | MS.gene30415:CDS |
| TAATGTTGGATTTACAGAGG+TGG | 0.664199 | 8.1:-78303138 | MS.gene30415:CDS |
| TATTAATGTAGGCAATAGGG+GGG | 0.676073 | 8.1:-78301118 | MS.gene30415:intron |
| CGGATGTTATGCAAGCAAAG+GGG | 0.705294 | 8.1:-78301662 | MS.gene30415:CDS |
| TGAATGGAATGAATGCATAG+GGG | 0.716012 | 8.1:-78301084 | MS.gene30415:CDS |
| ATTAATGTAGGCAATAGGGG+GGG | 0.720496 | 8.1:-78301117 | MS.gene30415:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAAAAACAAATTCATA+AGG | - | chr8.1:78303351-78303370 | MS.gene30415:CDS | 15.0% |
| !! | TTATGAGCTTAAAAAAAAAT+GGG | - | chr8.1:78302072-78302091 | MS.gene30415:intron | 15.0% |
| !!! | ATAACTATATTTTAAAAAGG+TGG | - | chr8.1:78302596-78302615 | MS.gene30415:intron | 15.0% |
| !!! | CTGATAACTATATTTTAAAA+AGG | - | chr8.1:78302593-78302612 | MS.gene30415:intron | 15.0% |
| !!! | CTTTTTAAAATATAGTTATC+AGG | + | chr8.1:78302595-78302614 | None:intergenic | 15.0% |
| !!! | TAATTTGACATAATCATTTT+AGG | - | chr8.1:78303239-78303258 | MS.gene30415:CDS | 15.0% |
| !!! | TGTTTTAATTTTACTTGTTT+TGG | - | chr8.1:78303038-78303057 | MS.gene30415:intron | 15.0% |
| !!! | TTTTAAGTTGTTATTAATGT+AGG | - | chr8.1:78303411-78303430 | MS.gene30415:CDS | 15.0% |
| !! | CTTATGAGCTTAAAAAAAAA+TGG | - | chr8.1:78302071-78302090 | MS.gene30415:intron | 20.0% |
| !! | TGTCATGAATATTAAATTTG+TGG | + | chr8.1:78302033-78302052 | None:intergenic | 20.0% |
| !! | TTAATATTCATGACAAATCT+TGG | - | chr8.1:78302038-78302057 | MS.gene30415:intron | 20.0% |
| !! | TTCGTAAACAAAAAAAAAGA+TGG | - | chr8.1:78301049-78301068 | MS.gene30415:CDS | 20.0% |
| !!! | AACATATTACAAATGTGTTT+TGG | - | chr8.1:78301560-78301579 | MS.gene30415:CDS | 20.0% |
| ! | AAAATGGAGTTAAACATCTT+GGG | - | chr8.1:78301906-78301925 | MS.gene30415:CDS | 25.0% |
| ! | CTAAGATACATGTAAAATCA+TGG | + | chr8.1:78303214-78303233 | None:intergenic | 25.0% |
| ! | GTTTGAATTGAATGATGTTA+AGG | - | chr8.1:78302564-78302583 | MS.gene30415:intron | 25.0% |
| ! | TGACATGTTCAAGAAAATAA+TGG | - | chr8.1:78302792-78302811 | MS.gene30415:intron | 25.0% |
| ! | TGTTATTAATGTAGGCAATA+GGG | - | chr8.1:78303419-78303438 | MS.gene30415:CDS | 25.0% |
| !! | AAATGATGGAATTTGAAACA+CGG | + | chr8.1:78302489-78302508 | None:intergenic | 25.0% |
| !! | TTGTTATTAATGTAGGCAAT+AGG | - | chr8.1:78303418-78303437 | MS.gene30415:CDS | 25.0% |
| !!! | AATTCTAGGATATTCACATT+CGG | + | chr8.1:78302190-78302209 | None:intergenic | 25.0% |
| !!! | ACATAATCATTTTAGGTTGA+TGG | - | chr8.1:78303246-78303265 | MS.gene30415:CDS | 25.0% |
| !!! | TTTTGAAATTACCATTAGCA+TGG | + | chr8.1:78303340-78303359 | None:intergenic | 25.0% |
| AACCAGAAAAAAAAAGCAAG+TGG | + | chr8.1:78301673-78301692 | None:intergenic | 30.0% | |
| ACCTAAAGAAAAAAGTTCAC+AGG | - | chr8.1:78302990-78303009 | MS.gene30415:intron | 30.0% | |
| ATAGAGGTTCAGTCATATTT+GGG | - | chr8.1:78301702-78301721 | MS.gene30415:CDS | 30.0% | |
| ATATGACTGAACCTCTATAA+TGG | + | chr8.1:78301700-78301719 | None:intergenic | 30.0% | |
| ATTACACTTTCTCGTAAGAA+TGG | - | chr8.1:78301190-78301209 | MS.gene30415:intron | 30.0% | |
| ATTCCATCATTTGTAGTTGT+AGG | - | chr8.1:78302497-78302516 | MS.gene30415:intron | 30.0% | |
| CAAAATGGAGTTAAACATCT+TGG | - | chr8.1:78301905-78301924 | MS.gene30415:CDS | 30.0% | |
| CAAAATGGTTGAAGAATTCT+AGG | + | chr8.1:78302204-78302223 | None:intergenic | 30.0% | |
| CCTCAACAACTATTTCAAAA+TGG | + | chr8.1:78302219-78302238 | None:intergenic | 30.0% | |
| GAGAAAAGATATGCATATGA+AGG | - | chr8.1:78301124-78301143 | MS.gene30415:intron | 30.0% | |
| GTTATTAATGTAGGCAATAG+GGG | - | chr8.1:78303420-78303439 | MS.gene30415:CDS | 30.0% | |
| GTTGTTTGATACATTCTTAC+AGG | - | chr8.1:78301766-78301785 | MS.gene30415:CDS | 30.0% | |
| TATAGAGGTTCAGTCATATT+TGG | - | chr8.1:78301701-78301720 | MS.gene30415:CDS | 30.0% | |
| TATGTTTGTCTTCAAAGTCA+TGG | + | chr8.1:78301228-78301247 | None:intergenic | 30.0% | |
| TGAGAGAAGAAAAAGAAGTA+TGG | - | chr8.1:78301444-78301463 | MS.gene30415:intron | 30.0% | |
| TGCATTCATTCCATTCAAAT+AGG | + | chr8.1:78303453-78303472 | None:intergenic | 30.0% | |
| TGTCTCTAAGTTCATTAAAG+CGG | - | chr8.1:78302714-78302733 | MS.gene30415:intron | 30.0% | |
| TTATTAATGTAGGCAATAGG+GGG | - | chr8.1:78303421-78303440 | MS.gene30415:CDS | 30.0% | |
| TTGAATGGAATGAATGCATA+GGG | - | chr8.1:78303455-78303474 | MS.gene30415:CDS | 30.0% | |
| TTTGAATGGAATGAATGCAT+AGG | - | chr8.1:78303454-78303473 | MS.gene30415:CDS | 30.0% | |
| ! | AAGGCAATTTGTTCTAACAT+CGG | + | chr8.1:78301164-78301183 | None:intergenic | 30.0% |
| ! | ACATGGCATTTGTTACAAAA+TGG | - | chr8.1:78301890-78301909 | MS.gene30415:CDS | 30.0% |
| ! | ATTCGATTTCTAGACAAGTT+AGG | + | chr8.1:78302682-78302701 | None:intergenic | 30.0% |
| ! | ATTTTGGATTACGGGTATTT+TGG | - | chr8.1:78301598-78301617 | MS.gene30415:CDS | 30.0% |
| ! | CACATATGATTTTGGATTAC+GGG | - | chr8.1:78301590-78301609 | MS.gene30415:CDS | 30.0% |
| ! | GCACATATGATTTTGGATTA+CGG | - | chr8.1:78301589-78301608 | MS.gene30415:CDS | 30.0% |
| ! | GTATTTTCAACGACAATTGT+TGG | - | chr8.1:78301495-78301514 | MS.gene30415:intron | 30.0% |
| ! | GTGTGTATATTTTTCCCATT+TGG | + | chr8.1:78302327-78302346 | None:intergenic | 30.0% |
| ! | TGTAGGAAGTTTGATACTTT+TGG | - | chr8.1:78302514-78302533 | MS.gene30415:intron | 30.0% |
| !! | TCTCTGAAATTTGTAGATCA+TGG | + | chr8.1:78301252-78301271 | None:intergenic | 30.0% |
| !! | TTTCCCATTTGGATTAGTAT+TGG | + | chr8.1:78302316-78302335 | None:intergenic | 30.0% |
| !!! | AAGCAGATTTTGAGATACTT+TGG | - | chr8.1:78301996-78302015 | MS.gene30415:intron | 30.0% |
| !!! | ACCTGTGAACTTTTTTCTTT+AGG | + | chr8.1:78302994-78303013 | None:intergenic | 30.0% |
| !!! | CCATTTTGAAATAGTTGTTG+AGG | - | chr8.1:78302216-78302235 | MS.gene30415:intron | 30.0% |
| !!! | TGTGAACTTTTTTCTTTAGG+TGG | + | chr8.1:78302991-78303010 | None:intergenic | 30.0% |
| AAGTTCACAGGTATATGAGT+TGG | - | chr8.1:78303002-78303021 | MS.gene30415:intron | 35.0% | |
| AGACAAGTGAGTCATTTAGA+TGG | - | chr8.1:78301744-78301763 | MS.gene30415:CDS | 35.0% | |
| AGCTAATGTTGGATTTACAG+AGG | - | chr8.1:78301399-78301418 | MS.gene30415:intron | 35.0% | |
| ATGCAGTAGCAGAAAATAGA+TGG | + | chr8.1:78303071-78303090 | None:intergenic | 35.0% | |
| ATGGACAATAACGGTGATAA+TGG | - | chr8.1:78302832-78302851 | MS.gene30415:intron | 35.0% | |
| CATAAACCATGATGAGTCTT+GGG | + | chr8.1:78301869-78301888 | None:intergenic | 35.0% | |
| CATCTGATATGCATGAAAGA+AGG | + | chr8.1:78301530-78301549 | None:intergenic | 35.0% | |
| CTTCCTACAACTACAAATGA+TGG | + | chr8.1:78302503-78302522 | None:intergenic | 35.0% | |
| CTTCTTTCATGCATATCAGA+TGG | - | chr8.1:78301528-78301547 | MS.gene30415:intron | 35.0% | |
| CTTGCTTATAGTTTCCGTAT+GGG | - | chr8.1:78301007-78301026 | MS.gene30415:CDS | 35.0% | |
| GAGTCAGATTCATGTCTAAT+TGG | + | chr8.1:78302406-78302425 | None:intergenic | 35.0% | |
| GATGATTGGAAACCAAAGAT+TGG | - | chr8.1:78300944-78300963 | MS.gene30415:CDS | 35.0% | |
| GCAAGCATATGAGATTGATT+TGG | - | chr8.1:78301312-78301331 | MS.gene30415:intron | 35.0% | |
| GCACCAATACTAATCCAAAT+GGG | - | chr8.1:78302310-78302329 | MS.gene30415:intron | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | - | chr8.1:78301402-78301421 | MS.gene30415:intron | 35.0% | |
| TAGAGGTTCAGTCATATTTG+GGG | - | chr8.1:78301703-78301722 | MS.gene30415:CDS | 35.0% | |
| TATTAATGTAGGCAATAGGG+GGG | - | chr8.1:78303422-78303441 | MS.gene30415:CDS | 35.0% | |
| TCAAATCCCATTCCAATCTT+TGG | + | chr8.1:78300959-78300978 | None:intergenic | 35.0% | |
| TCGCTTAATTCTCTTTGAAC+CGG | + | chr8.1:78302917-78302936 | None:intergenic | 35.0% | |
| TGAATGGAATGAATGCATAG+GGG | - | chr8.1:78303456-78303475 | MS.gene30415:CDS | 35.0% | |
| TGATATGCATGAAAGAAGGA+TGG | + | chr8.1:78301526-78301545 | None:intergenic | 35.0% | |
| TGCACCAATACTAATCCAAA+TGG | - | chr8.1:78302309-78302328 | MS.gene30415:intron | 35.0% | |
| TGGAAACCAAAGATTGGAAT+GGG | - | chr8.1:78300950-78300969 | MS.gene30415:CDS | 35.0% | |
| TGGAATGGGATTTGATTCTA+TGG | - | chr8.1:78300964-78300983 | MS.gene30415:CDS | 35.0% | |
| TGGCTCAAGTTTCTTGATAA+TGG | - | chr8.1:78302763-78302782 | MS.gene30415:intron | 35.0% | |
| TTCATTCCATTCAAATAGGC+TGG | + | chr8.1:78303449-78303468 | None:intergenic | 35.0% | |
| TTCTCGTAAGAATGGAAAGT+TGG | - | chr8.1:78301198-78301217 | MS.gene30415:intron | 35.0% | |
| TTGGAAACCAAAGATTGGAA+TGG | - | chr8.1:78300949-78300968 | MS.gene30415:CDS | 35.0% | |
| TTGTGAATATGTCATCACTG+AGG | - | chr8.1:78302429-78302448 | MS.gene30415:intron | 35.0% | |
| ! | AGAAAAAGAAGTATGGCGTA+TGG | - | chr8.1:78301451-78301470 | MS.gene30415:intron | 35.0% |
| ! | GAGAAAGTGTAATTCTTGCA+AGG | + | chr8.1:78301183-78301202 | None:intergenic | 35.0% |
| ! | GTGTGATGCACATATGATTT+TGG | - | chr8.1:78301582-78301601 | MS.gene30415:CDS | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | - | chr8.1:78301686-78301705 | MS.gene30415:CDS | 35.0% |
| ! | TGGAAGAGGCTAGTAAATTT+TGG | - | chr8.1:78300984-78301003 | MS.gene30415:CDS | 35.0% |
| !! | ATGTCGATTGGTTTGTTGTA+AGG | - | chr8.1:78301084-78301103 | MS.gene30415:CDS | 35.0% |
| !! | ATTGATTTGGCTAATGACTC+TGG | - | chr8.1:78301325-78301344 | MS.gene30415:intron | 35.0% |
| !! | GATTGGTTTGTTGTAAGGAA+GGG | - | chr8.1:78301089-78301108 | MS.gene30415:CDS | 35.0% |
| !!! | TTTTGGCGATGTTGTTTCTT+TGG | - | chr8.1:78301615-78301634 | MS.gene30415:CDS | 35.0% |
| AAACTTGAGCCATTCTTCCT+TGG | + | chr8.1:78302755-78302774 | None:intergenic | 40.0% | |
| AACTTATGAGCACACAAGCA+GGG | - | chr8.1:78301371-78301390 | MS.gene30415:intron | 40.0% | |
| AACTTGAGCCATTCTTCCTT+GGG | + | chr8.1:78302754-78302773 | None:intergenic | 40.0% | |
| AATCCTCACATAAGCTTGCA+AGG | - | chr8.1:78302272-78302291 | MS.gene30415:intron | 40.0% | |
| AATCTTGCACAACGCCATAA+CGG | + | chr8.1:78302633-78302652 | None:intergenic | 40.0% | |
| ACAAAACAGCAGCAGAAAAC+AGG | + | chr8.1:78303508-78303527 | None:intergenic | 40.0% | |
| ACATCCGAACTCACAATTTC+TGG | + | chr8.1:78302865-78302884 | None:intergenic | 40.0% | |
| ACATCTTGGGAACTTGATGA+CGG | - | chr8.1:78301919-78301938 | MS.gene30415:CDS | 40.0% | |
| ACTGTACCAACCATGTCAAT+AGG | - | chr8.1:78301647-78301666 | MS.gene30415:CDS | 40.0% | |
| ACTTGATCCTCATGAACTTG+TGG | + | chr8.1:78303306-78303325 | None:intergenic | 40.0% | |
| AGGCAAAACATGAAGGATCT+TGG | - | chr8.1:78302449-78302468 | MS.gene30415:intron | 40.0% | |
| ATCACTGAGGCAAAACATGA+AGG | - | chr8.1:78302442-78302461 | MS.gene30415:intron | 40.0% | |
| ATTAATGTAGGCAATAGGGG+GGG | - | chr8.1:78303423-78303442 | MS.gene30415:CDS | 40.0% | |
| CAATTACACAGCCATGCTAA+TGG | - | chr8.1:78303326-78303345 | MS.gene30415:CDS | 40.0% | |
| CGCTTAATTCTCTTTGAACC+GGG | + | chr8.1:78302916-78302935 | None:intergenic | 40.0% | |
| CTCATCATGGTTTATGCACA+TGG | - | chr8.1:78301873-78301892 | MS.gene30415:CDS | 40.0% | |
| CTTGATCCTCATGAACTTGT+GGG | + | chr8.1:78303305-78303324 | None:intergenic | 40.0% | |
| GAATGGAATGAATGCATAGG+GGG | - | chr8.1:78303457-78303476 | MS.gene30415:CDS | 40.0% | |
| GCACAAGCTATGGACAATAA+CGG | - | chr8.1:78302823-78302842 | MS.gene30415:intron | 40.0% | |
| GCATAAACCATGATGAGTCT+TGG | + | chr8.1:78301870-78301889 | None:intergenic | 40.0% | |
| GCTTGCTTATAGTTTCCGTA+TGG | - | chr8.1:78301006-78301025 | MS.gene30415:CDS | 40.0% | |
| GGGATTTGATTCTATGGAAG+AGG | - | chr8.1:78300970-78300989 | MS.gene30415:CDS | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | + | chr8.1:78302278-78302297 | None:intergenic | 40.0% | |
| TAAGCGACACAAAAGTTGTC+TGG | - | chr8.1:78302930-78302949 | MS.gene30415:intron | 40.0% | |
| TAGTGTATCGTCATGTCGAT+TGG | - | chr8.1:78301072-78301091 | MS.gene30415:CDS | 40.0% | |
| TCGGATGTTATGCAAGCAAA+GGG | - | chr8.1:78302877-78302896 | MS.gene30415:intron | 40.0% | |
| TCGTCCAGAAATTGTGAGTT+CGG | - | chr8.1:78302858-78302877 | MS.gene30415:intron | 40.0% | |
| TGGCATCTTCAGATGATGAT+TGG | - | chr8.1:78300930-78300949 | MS.gene30415:CDS | 40.0% | |
| TGGCTAATGACTCTGGATTA+AGG | - | chr8.1:78301332-78301351 | MS.gene30415:intron | 40.0% | |
| TGGGCTGCATGTTATATGAA+GGG | - | chr8.1:78302091-78302110 | MS.gene30415:intron | 40.0% | |
| TGGTCAGTGAAGATTGTCTT+TGG | + | chr8.1:78301809-78301828 | None:intergenic | 40.0% | |
| TTCGGATGTTATGCAAGCAA+AGG | - | chr8.1:78302876-78302895 | MS.gene30415:intron | 40.0% | |
| TTGATCCTCATGAACTTGTG+GGG | + | chr8.1:78303304-78303323 | None:intergenic | 40.0% | |
| ! | AAGCAATAGCAGCTTTGTCA+AGG | + | chr8.1:78303171-78303190 | None:intergenic | 40.0% |
| ! | ATGGCGTTGTGCAAGATTTT+AGG | - | chr8.1:78302635-78302654 | MS.gene30415:intron | 40.0% |
| ! | ATGGGCTGCATGTTATATGA+AGG | - | chr8.1:78302090-78302109 | MS.gene30415:intron | 40.0% |
| ! | TGGCGTTGTGCAAGATTTTA+GGG | - | chr8.1:78302636-78302655 | MS.gene30415:intron | 40.0% |
| !! | ATGAAGGGAGTGTTAACACT+TGG | - | chr8.1:78302106-78302125 | MS.gene30415:intron | 40.0% |
| !! | CGATTGGTTTGTTGTAAGGA+AGG | - | chr8.1:78301088-78301107 | MS.gene30415:CDS | 40.0% |
| !! | TGTGCAAGATTTTAGGGGAA+GGG | - | chr8.1:78302642-78302661 | MS.gene30415:intron | 40.0% |
| !! | TTGTGCAAGATTTTAGGGGA+AGG | - | chr8.1:78302641-78302660 | MS.gene30415:intron | 40.0% |
| !!! | CTGCTGTTTTGTGTCTGTTA+TGG | - | chr8.1:78303516-78303535 | MS.gene30415:CDS | 40.0% |
| !!! | GGCCACTTGCTTTTTTTTTC+TGG | - | chr8.1:78301668-78301687 | MS.gene30415:CDS | 40.0% |
| !!! | TTTTTTCTTTAGGTGGAGCG+CGG | + | chr8.1:78302984-78303003 | None:intergenic | 40.0% |
| AAGCAAGTGGCCTATTGACA+TGG | + | chr8.1:78301660-78301679 | None:intergenic | 45.0% | |
| AAGCATCACCCAAGGAAGAA+TGG | - | chr8.1:78302743-78302762 | MS.gene30415:intron | 45.0% | |
| AAGTGGCCTATTGACATGGT+TGG | + | chr8.1:78301656-78301675 | None:intergenic | 45.0% | |
| ATCTTGCACAACGCCATAAC+GGG | + | chr8.1:78302632-78302651 | None:intergenic | 45.0% | |
| CAACTTATGAGCACACAAGC+AGG | - | chr8.1:78301370-78301389 | MS.gene30415:intron | 45.0% | |
| CACTGACCAAGATCAAGCAA+TGG | - | chr8.1:78301820-78301839 | MS.gene30415:CDS | 45.0% | |
| CAGAGACAACACACATGCTT+CGG | - | chr8.1:78301266-78301285 | MS.gene30415:CDS | 45.0% | |
| CCAAGATCAAGCAATGGCAA+TGG | - | chr8.1:78301826-78301845 | MS.gene30415:CDS | 45.0% | |
| CCATTGCCATTGCTTGATCT+TGG | + | chr8.1:78301829-78301848 | None:intergenic | 45.0% | |
| CGGATGTTATGCAAGCAAAG+GGG | - | chr8.1:78302878-78302897 | MS.gene30415:intron | 45.0% | |
| CTCTAACTTCGAAGCCCATA+CGG | + | chr8.1:78301024-78301043 | None:intergenic | 45.0% | |
| GCAGAAAACAACCTGCAAAC+CGG | + | chr8.1:78303565-78303584 | None:intergenic | 45.0% | |
| GCGAGATTGGATGTCTTTCA+CGG | - | chr8.1:78301473-78301492 | MS.gene30415:intron | 45.0% | |
| GTTGTAAGGAAGGGCTAAAG+AGG | - | chr8.1:78301098-78301117 | MS.gene30415:CDS | 45.0% | |
| TAAGGAAGGGCTAAAGAGGA+AGG | - | chr8.1:78301102-78301121 | MS.gene30415:CDS | 45.0% | |
| TATGCAAGCAAAGGGGTTCA+GGG | - | chr8.1:78302885-78302904 | MS.gene30415:intron | 45.0% | |
| TGATCCTCATGAACTTGTGG+GGG | + | chr8.1:78303303-78303322 | None:intergenic | 45.0% | |
| TTATGCAAGCAAAGGGGTTC+AGG | - | chr8.1:78302884-78302903 | MS.gene30415:intron | 45.0% | |
| ! | CATCTTGGGAACTTGATGAC+GGG | - | chr8.1:78301920-78301939 | MS.gene30415:CDS | 45.0% |
| ! | GGCGTTGTGCAAGATTTTAG+GGG | - | chr8.1:78302637-78302656 | MS.gene30415:intron | 45.0% |
| !! | CAGGTTGTTTTCTGCTGTTC+AGG | - | chr8.1:78303570-78303589 | MS.gene30415:CDS | 45.0% |
| ACTTGTGGGGGCTCATAAGT+TGG | + | chr8.1:78303291-78303310 | None:intergenic | 50.0% | |
| AGTATGGCGTATGGCGAGAT+TGG | - | chr8.1:78301460-78301479 | MS.gene30415:intron | 50.0% | |
| GCAGGGCATAGAGCTAATGT+TGG | - | chr8.1:78301388-78301407 | MS.gene30415:intron | 50.0% | |
| GGAACTTCACGCACAAGCTA+TGG | - | chr8.1:78302813-78302832 | MS.gene30415:intron | 50.0% | |
| GTGATGCCCAAGACTCATCA+TGG | - | chr8.1:78301860-78301879 | MS.gene30415:CDS | 50.0% | |
| TGGACAAGAGAAGCCCGTTA+TGG | - | chr8.1:78302616-78302635 | MS.gene30415:intron | 50.0% | |
| TTTAGGGGAAGGGAGGTTGA+AGG | - | chr8.1:78302652-78302671 | MS.gene30415:intron | 50.0% | |
| ! | AATGAATGCATAGGGGGCAC+TGG | - | chr8.1:78303463-78303482 | MS.gene30415:CDS | 50.0% |
| ! | GACATGGTTGGTACAGTACG+TGG | + | chr8.1:78301644-78301663 | None:intergenic | 50.0% |
| ! | TGTTTTCTGCTGTTCAGGCG+CGG | - | chr8.1:78303575-78303594 | MS.gene30415:CDS | 50.0% |
| !! | GCAAGATTTTAGGGGAAGGG+AGG | - | chr8.1:78302645-78302664 | MS.gene30415:intron | 50.0% |
| TGAGCCCCCACAAGTTCATG+AGG | - | chr8.1:78303296-78303315 | MS.gene30415:CDS | 55.0% | |
| ! | GGCAACTGAAGCATCACCCA+AGG | - | chr8.1:78302735-78302754 | MS.gene30415:intron | 55.0% |
| ! | TGTGGGGGCTCATAAGTTGG+AGG | + | chr8.1:78303288-78303307 | None:intergenic | 55.0% |
| !! | CTTGGGAACTTGATGACGGG+AGG | - | chr8.1:78301923-78301942 | MS.gene30415:CDS | 55.0% |
| AAGGGGTTCAGGGTACGACC+CGG | - | chr8.1:78302895-78302914 | MS.gene30415:intron | 60.0% | |
| GGGGGGCCAGCCTATTTGAA+TGG | - | chr8.1:78303440-78303459 | MS.gene30415:CDS | 60.0% | |
| GTGTCTGTTATGGCCGCTGC+AGG | - | chr8.1:78303526-78303545 | MS.gene30415:CDS | 60.0% | |
| ! | GCTGTTCAGGCGCGGCTTTT+TGG | - | chr8.1:78303583-78303602 | MS.gene30415:CDS | 60.0% |
| !!! | AGGCGCGGCTTTTTGGAGCA+TGG | - | chr8.1:78303590-78303609 | MS.gene30415:CDS | 60.0% |
| !!! | GGCGCGGCTTTTTGGAGCAT+GGG | - | chr8.1:78303591-78303610 | MS.gene30415:CDS | 60.0% |
| TATGGCCGCTGCAGGTGCCT+GGG | - | chr8.1:78303534-78303553 | MS.gene30415:CDS | 65.0% | |
| TTATGGCCGCTGCAGGTGCC+TGG | - | chr8.1:78303533-78303552 | MS.gene30415:CDS | 65.0% | |
| AACCCCCCAGGCACCTGCAG+CGG | + | chr8.1:78303542-78303561 | None:intergenic | 70.0% | |
| ATGGCCGCTGCAGGTGCCTG+GGG | - | chr8.1:78303535-78303554 | MS.gene30415:CDS | 70.0% | |
| CCTGCAAACCGGAACCCCCC+AGG | + | chr8.1:78303554-78303573 | None:intergenic | 70.0% | |
| TGCAGGTGCCTGGGGGGTTC+CGG | - | chr8.1:78303543-78303562 | MS.gene30415:CDS | 70.0% | |
| ! | CCTGGGGGGTTCCGGTTTGC+AGG | - | chr8.1:78303551-78303570 | MS.gene30415:CDS | 70.0% |
| TGGCCGCTGCAGGTGCCTGG+GGG | - | chr8.1:78303536-78303555 | MS.gene30415:CDS | 75.0% | |
| ! | GGCCGCTGCAGGTGCCTGGG+GGG | - | chr8.1:78303537-78303556 | MS.gene30415:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 78300929 | 78303633 | 78300929 | ID=MS.gene30415 |
| chr8.1 | mRNA | 78300929 | 78303633 | 78300929 | ID=MS.gene30415.t1;Parent=MS.gene30415 |
| chr8.1 | exon | 78303068 | 78303633 | 78303068 | ID=MS.gene30415.t1.exon1;Parent=MS.gene30415.t1 |
| chr8.1 | CDS | 78303068 | 78303633 | 78303068 | ID=cds.MS.gene30415.t1;Parent=MS.gene30415.t1 |
| chr8.1 | exon | 78301551 | 78301947 | 78301551 | ID=MS.gene30415.t1.exon2;Parent=MS.gene30415.t1 |
| chr8.1 | CDS | 78301551 | 78301947 | 78301551 | ID=cds.MS.gene30415.t1;Parent=MS.gene30415.t1 |
| chr8.1 | exon | 78301215 | 78301301 | 78301215 | ID=MS.gene30415.t1.exon3;Parent=MS.gene30415.t1 |
| chr8.1 | CDS | 78301215 | 78301301 | 78301215 | ID=cds.MS.gene30415.t1;Parent=MS.gene30415.t1 |
| chr8.1 | exon | 78300929 | 78301129 | 78300929 | ID=MS.gene30415.t1.exon4;Parent=MS.gene30415.t1 |
| chr8.1 | CDS | 78300929 | 78301129 | 78300929 | ID=cds.MS.gene30415.t1;Parent=MS.gene30415.t1 |
| Gene Sequence |
| Protein sequence |
