Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30577.t1 | XP_013444424.1 | 78.8 | 320 | 64 | 3 | 1 | 318 | 1 | 318 | 1.80E-129 | 472.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30577.t1 | Q9LVJ7 | 55.2 | 172 | 64 | 6 | 132 | 295 | 135 | 301 | 8.3e-38 | 159.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30577.t1 | A0A072TLS7 | 78.8 | 320 | 64 | 3 | 1 | 318 | 1 | 318 | 1.3e-129 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene30577.t1 | TF | NF-YA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30577.t1 | MTR_8g019540 | 92.500 | 320 | 20 | 3 | 1 | 318 | 1 | 318 | 0.0 | 565 |
| MS.gene30577.t1 | MTR_2g099490 | 53.049 | 328 | 119 | 10 | 7 | 318 | 23 | 331 | 6.67e-89 | 269 |
| MS.gene30577.t1 | MTR_2g099490 | 50.733 | 341 | 123 | 10 | 7 | 318 | 23 | 347 | 1.44e-87 | 266 |
| MS.gene30577.t1 | MTR_2g041090 | 48.404 | 188 | 86 | 6 | 111 | 287 | 17 | 204 | 3.92e-45 | 154 |
| MS.gene30577.t1 | MTR_2g030170 | 62.222 | 90 | 33 | 1 | 138 | 227 | 85 | 173 | 8.92e-33 | 120 |
| MS.gene30577.t1 | MTR_3g061510 | 53.774 | 106 | 45 | 2 | 118 | 222 | 124 | 226 | 9.62e-32 | 121 |
| MS.gene30577.t1 | MTR_2g030170 | 67.532 | 77 | 25 | 0 | 151 | 227 | 130 | 206 | 1.18e-31 | 119 |
| MS.gene30577.t1 | MTR_3g061510 | 53.774 | 106 | 45 | 2 | 118 | 222 | 144 | 246 | 1.25e-31 | 121 |
| MS.gene30577.t1 | MTR_8g037270 | 44.444 | 171 | 73 | 7 | 130 | 280 | 115 | 283 | 6.81e-31 | 118 |
| MS.gene30577.t1 | MTR_7g106450 | 67.123 | 73 | 22 | 1 | 157 | 227 | 154 | 226 | 5.87e-26 | 105 |
| MS.gene30577.t1 | MTR_1g056530 | 47.899 | 119 | 43 | 4 | 112 | 226 | 120 | 223 | 5.90e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30577.t1 | AT3G14020 | 45.695 | 302 | 135 | 13 | 4 | 294 | 17 | 300 | 8.73e-57 | 186 |
| MS.gene30577.t1 | AT3G14020 | 45.695 | 302 | 135 | 13 | 4 | 294 | 17 | 300 | 8.73e-57 | 186 |
| MS.gene30577.t1 | AT1G72830 | 37.273 | 330 | 176 | 9 | 4 | 316 | 23 | 338 | 6.94e-51 | 172 |
| MS.gene30577.t1 | AT1G72830 | 37.160 | 331 | 176 | 10 | 4 | 316 | 23 | 339 | 4.42e-49 | 167 |
| MS.gene30577.t1 | AT1G54160 | 48.889 | 225 | 97 | 7 | 17 | 230 | 24 | 241 | 5.28e-48 | 163 |
| MS.gene30577.t1 | AT1G17590 | 37.615 | 327 | 162 | 12 | 7 | 316 | 25 | 326 | 1.99e-46 | 160 |
| MS.gene30577.t1 | AT1G17590 | 37.615 | 327 | 162 | 12 | 7 | 316 | 25 | 326 | 1.99e-46 | 160 |
| MS.gene30577.t1 | AT1G17590 | 37.615 | 327 | 162 | 12 | 7 | 316 | 25 | 326 | 1.99e-46 | 160 |
| MS.gene30577.t1 | AT1G17590 | 37.615 | 327 | 162 | 12 | 7 | 316 | 25 | 326 | 1.99e-46 | 160 |
| MS.gene30577.t1 | AT1G72830 | 33.739 | 329 | 164 | 9 | 4 | 316 | 23 | 313 | 3.18e-37 | 135 |
| MS.gene30577.t1 | AT1G30500 | 52.632 | 114 | 53 | 1 | 118 | 231 | 52 | 164 | 1.59e-35 | 127 |
| MS.gene30577.t1 | AT1G30500 | 50.877 | 114 | 51 | 1 | 118 | 231 | 52 | 160 | 3.28e-34 | 124 |
| MS.gene30577.t1 | AT2G34720 | 47.059 | 119 | 53 | 2 | 115 | 227 | 44 | 158 | 8.02e-31 | 115 |
| MS.gene30577.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 112 | 233 | 2.59e-30 | 116 |
| MS.gene30577.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 112 | 233 | 2.59e-30 | 116 |
| MS.gene30577.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 113 | 234 | 2.93e-30 | 115 |
| MS.gene30577.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 113 | 234 | 2.93e-30 | 115 |
| MS.gene30577.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 113 | 234 | 2.93e-30 | 115 |
| MS.gene30577.t1 | AT2G34720 | 49.123 | 114 | 48 | 2 | 120 | 227 | 14 | 123 | 7.85e-30 | 111 |
| MS.gene30577.t1 | AT2G34720 | 49.123 | 114 | 48 | 2 | 120 | 227 | 14 | 123 | 7.85e-30 | 111 |
| MS.gene30577.t1 | AT3G20910 | 45.802 | 131 | 43 | 4 | 106 | 222 | 105 | 221 | 3.51e-29 | 114 |
| MS.gene30577.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 93 | 190 | 2.08e-24 | 100 |
| MS.gene30577.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 93 | 190 | 2.08e-24 | 100 |
| MS.gene30577.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 93 | 190 | 2.08e-24 | 100 |
| MS.gene30577.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 93 | 190 | 2.08e-24 | 100 |
| MS.gene30577.t1 | AT3G05690 | 46.667 | 135 | 50 | 6 | 109 | 235 | 90 | 210 | 3.62e-24 | 100 |
| MS.gene30577.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 44 | 141 | 4.20e-24 | 98.2 |
| MS.gene30577.t1 | AT5G06510 | 54.369 | 103 | 33 | 5 | 125 | 226 | 6 | 95 | 8.19e-24 | 96.3 |
| MS.gene30577.t1 | AT5G06510 | 54.369 | 103 | 33 | 5 | 125 | 226 | 6 | 95 | 8.19e-24 | 96.3 |
| MS.gene30577.t1 | AT3G05690 | 46.667 | 135 | 50 | 6 | 109 | 235 | 127 | 247 | 9.30e-24 | 99.8 |
Find 0 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAAGTTTTTTCCTATA+CGG | + | 57447:15656-15675 | None:intergenic | 15.0% |
| !! | AATATTTGCAAGAAAAACTA+TGG | - | 57447:16291-16310 | MS.gene30577:intron | 20.0% |
| !! | ATCATATTTATGTCTTTATC+TGG | - | 57447:16315-16334 | MS.gene30577:CDS | 20.0% |
| !! | ATTTAATTACGAATAGTTAC+CGG | + | 57447:15061-15080 | None:intergenic | 20.0% |
| !! | TGTATGTATATTTCAGAATT+CGG | + | 57447:16714-16733 | None:intergenic | 20.0% |
| !!! | AAATTCTATCTAAAATCTGT+TGG | - | 57447:15349-15368 | MS.gene30577:CDS | 20.0% |
| !!! | AATTCTATCTAAAATCTGTT+GGG | - | 57447:15350-15369 | MS.gene30577:CDS | 20.0% |
| !!! | TACAAAGTGTTTATAAATAG+AGG | + | 57447:16027-16046 | None:intergenic | 20.0% |
| ! | AAAGTAGATTATTAGAGATG+TGG | - | 57447:15143-15162 | MS.gene30577:CDS | 25.0% |
| ! | AATACTCATCAATATGCATT+AGG | + | 57447:15741-15760 | None:intergenic | 25.0% |
| ! | AATGAAGTGATACAAATTTG+TGG | - | 57447:15582-15601 | MS.gene30577:intron | 25.0% |
| ! | AGAATTCGTTCAAATTCAAA+AGG | + | 57447:16527-16546 | None:intergenic | 25.0% |
| ! | CATATATACTTACAAGTGAT+TGG | + | 57447:15911-15930 | None:intergenic | 25.0% |
| ! | CTGAAAATGAGTTTATAAGT+GGG | - | 57447:15453-15472 | MS.gene30577:intron | 25.0% |
| ! | GAATTACATCAAGTCTAAAT+AGG | + | 57447:15206-15225 | None:intergenic | 25.0% |
| ! | TGTTTATAGATTCTATTGGT+TGG | - | 57447:16625-16644 | MS.gene30577:intron | 25.0% |
| !! | GAAGTGTTTATAGATTCTAT+TGG | - | 57447:16621-16640 | MS.gene30577:intron | 25.0% |
| !! | TTGTATGTTTCTGATATTTG+AGG | - | 57447:16346-16365 | MS.gene30577:CDS | 25.0% |
| !!! | TTAATTTGTGATACGCTATT+TGG | + | 57447:16050-16069 | None:intergenic | 25.0% |
| !!! | TTGCAAATATTTTTGACACA+AGG | + | 57447:16282-16301 | None:intergenic | 25.0% |
| AAAAAGAGAAACACCTTTGT+AGG | - | 57447:16473-16492 | MS.gene30577:intron | 30.0% | |
| AACTAGTATTAGAAAGCTGT+TGG | - | 57447:15688-15707 | MS.gene30577:intron | 30.0% | |
| AACTTAACACATACATAAGG+CGG | + | 57447:16391-16410 | None:intergenic | 30.0% | |
| AGAACAAACTCGTCAAAAAT+CGG | - | 57447:16896-16915 | MS.gene30577:intron | 30.0% | |
| ATAAATCTCCCTTAGAGAAA+AGG | + | 57447:16944-16963 | None:intergenic | 30.0% | |
| ATTGAGTAGAAGAAGAATCT+TGG | + | 57447:14996-15015 | None:intergenic | 30.0% | |
| CCAAACTTAACACATACATA+AGG | + | 57447:16394-16413 | None:intergenic | 30.0% | |
| CCTGAAAATGAGTTTATAAG+TGG | - | 57447:15452-15471 | MS.gene30577:intron | 30.0% | |
| CCTTATGTATGTGTTAAGTT+TGG | - | 57447:16391-16410 | MS.gene30577:CDS | 30.0% | |
| GTATATATGTGTTTGTGTGT+TGG | - | 57447:15922-15941 | MS.gene30577:intron | 30.0% | |
| TAATTCAACCCCTACAAAAT+AGG | + | 57447:15500-15519 | None:intergenic | 30.0% | |
| TATTGATGAGTATTTGCTCT+AGG | - | 57447:15747-15766 | MS.gene30577:intron | 30.0% | |
| TCTTGAAATTGAAAACCTAG+TGG | + | 57447:14973-14992 | None:intergenic | 30.0% | |
| TGAGTACTCTCTTTGAATTT+GGG | + | 57447:15530-15549 | None:intergenic | 30.0% | |
| TTAAGAGTCACACAATTGAT+GGG | - | 57447:15423-15442 | MS.gene30577:CDS | 30.0% | |
| TTGTTATACTGGACAGAAAT+TGG | + | 57447:15774-15793 | None:intergenic | 30.0% | |
| ! | AATAGCATGTTTTCCTACAA+AGG | + | 57447:16489-16508 | None:intergenic | 30.0% |
| ! | AGTTAGATTTTCTGACATAG+AGG | + | 57447:14908-14927 | None:intergenic | 30.0% |
| ! | CAAGTAGAAAAGTATAGAGA+TGG | - | 57447:17163-17182 | MS.gene30577:CDS | 30.0% |
| ! | CCACTTATAAACTCATTTTC+AGG | + | 57447:15455-15474 | None:intergenic | 30.0% |
| ! | CTTCTAAGAAGCTAAGTAAA+AGG | + | 57447:16605-16624 | None:intergenic | 30.0% |
| ! | GCTAAGTAAAAGGCATAAAT+AGG | + | 57447:16595-16614 | None:intergenic | 30.0% |
| ! | GTAGCGGAATTTGAATAAAT+TGG | + | 57447:16075-16094 | None:intergenic | 30.0% |
| ! | TATTTTGTAGGGGTTGAATT+AGG | - | 57447:15499-15518 | MS.gene30577:intron | 30.0% |
| ! | TTCTGTTTCCTTTTCTCTAA+GGG | - | 57447:16933-16952 | MS.gene30577:intron | 30.0% |
| ! | TTTCTGTTTCCTTTTCTCTA+AGG | - | 57447:16932-16951 | MS.gene30577:intron | 30.0% |
| ! | TTTCTTATAGTTTGCCTTTC+AGG | - | 57447:16149-16168 | MS.gene30577:intron | 30.0% |
| AAACATTAAAGCCATGGTCT+TGG | + | 57447:17090-17109 | None:intergenic | 35.0% | |
| AAGCAGAGGAATTGTTATAC+TGG | + | 57447:15785-15804 | None:intergenic | 35.0% | |
| ACAAATCCTGCATATGAGAA+GGG | + | 57447:17282-17301 | None:intergenic | 35.0% | |
| ACAAGAGTCAAATGCAGATA+TGG | + | 57447:15089-15108 | None:intergenic | 35.0% | |
| ACATTATTCCGTGATCCATA+TGG | + | 57447:16228-16247 | None:intergenic | 35.0% | |
| AGAAAACATGATATCCACGA+AGG | + | 57447:15323-15342 | None:intergenic | 35.0% | |
| CATGCTATAAAAATCTTGCC+AGG | - | 57447:16732-16751 | MS.gene30577:intron | 35.0% | |
| GGTTCTTCACAAAGATTAAG+AGG | + | 57447:16805-16824 | None:intergenic | 35.0% | |
| GTGAGTACTCTCTTTGAATT+TGG | + | 57447:15531-15550 | None:intergenic | 35.0% | |
| GTTAAGAGTCACACAATTGA+TGG | - | 57447:15422-15441 | MS.gene30577:CDS | 35.0% | |
| TCAAGTAACTCAATGGCATT+TGG | + | 57447:16665-16684 | None:intergenic | 35.0% | |
| TCACAAAGATTAAGAGGCAA+AGG | + | 57447:16799-16818 | None:intergenic | 35.0% | |
| TCTTCTTCTACTCAATCAAC+TGG | - | 57447:15000-15019 | MS.gene30577:CDS | 35.0% | |
| TGCTTTGCATTCACGTATAT+TGG | + | 57447:16826-16845 | None:intergenic | 35.0% | |
| TGGTACATCAAGTAACTCAA+TGG | + | 57447:16672-16691 | None:intergenic | 35.0% | |
| TTAATGTTTCCACCACTACT+CGG | - | 57447:17101-17120 | MS.gene30577:intron | 35.0% | |
| TTGAGTTACTTGATGTACCA+TGG | - | 57447:16672-16691 | MS.gene30577:intron | 35.0% | |
| ! | ACAGTAAGTGTTGTCAATTG+TGG | - | 57447:15955-15974 | MS.gene30577:intron | 35.0% |
| ! | ACCTTACAAGCCTATTTTGT+AGG | - | 57447:15487-15506 | MS.gene30577:intron | 35.0% |
| ! | ATCTTATCTGGAAGTTGGTT+CGG | - | 57447:15029-15048 | MS.gene30577:CDS | 35.0% |
| ! | CCTTACAAGCCTATTTTGTA+GGG | - | 57447:15488-15507 | MS.gene30577:intron | 35.0% |
| ! | CTTACAAGCCTATTTTGTAG+GGG | - | 57447:15489-15508 | MS.gene30577:intron | 35.0% |
| AACTGGTGGTCAATCTTATC+TGG | - | 57447:15017-15036 | MS.gene30577:CDS | 40.0% | |
| AGCGACACTATAACATTGGA+AGG | + | 57447:16000-16019 | None:intergenic | 40.0% | |
| CATGCTGAGACATACTCTAA+TGG | - | 57447:16189-16208 | MS.gene30577:intron | 40.0% | |
| CCCTACAAAATAGGCTTGTA+AGG | + | 57447:15491-15510 | None:intergenic | 40.0% | |
| CGATAGCGACACTATAACAT+TGG | + | 57447:16004-16023 | None:intergenic | 40.0% | |
| CTCTGCATTGAATACCGTAT+AGG | - | 57447:15639-15658 | MS.gene30577:intron | 40.0% | |
| GACAAATCCTGCATATGAGA+AGG | + | 57447:17283-17302 | None:intergenic | 40.0% | |
| GGTCAATCTTATCTGGAAGT+TGG | - | 57447:15024-15043 | MS.gene30577:CDS | 40.0% | |
| GTCTACGTCTCATAATAGCA+TGG | + | 57447:16852-16871 | None:intergenic | 40.0% | |
| GTGATAGACAGAATTCACCA+TGG | + | 57447:16692-16711 | None:intergenic | 40.0% | |
| TAGAGTATGTCTCAGCATGA+GGG | + | 57447:16188-16207 | None:intergenic | 40.0% | |
| TCTTCTACTCAATCAACTGG+TGG | - | 57447:15003-15022 | MS.gene30577:CDS | 40.0% | |
| TGAAGTCGGATTCATGTTGT+TGG | + | 57447:17246-17265 | None:intergenic | 40.0% | |
| TGCAACAAGTCTAAACCACT+AGG | - | 57447:14955-14974 | MS.gene30577:CDS | 40.0% | |
| TGGAAATGTGCTGGAATCAA+GGG | - | 57447:17135-17154 | MS.gene30577:intron | 40.0% | |
| TGGTGGAAACATTAAAGCCA+TGG | + | 57447:17096-17115 | None:intergenic | 40.0% | |
| TGTTCAACACTTAGCGAAAC+CGG | - | 57447:15804-15823 | MS.gene30577:intron | 40.0% | |
| TTAGAGTATGTCTCAGCATG+AGG | + | 57447:16189-16208 | None:intergenic | 40.0% | |
| ! | GTAACCACATGATCTGAAGT+CGG | + | 57447:17260-17279 | None:intergenic | 40.0% |
| ! | TTTTCTCTCTTCTACCTTCG+TGG | - | 57447:15306-15325 | MS.gene30577:CDS | 40.0% |
| !! | ATGTCTAGTCTTGGATGCAA+GGG | - | 57447:15393-15412 | MS.gene30577:CDS | 40.0% |
| !! | ATTAGAAGCACTTGTGACGT+CGG | + | 57447:17209-17228 | None:intergenic | 40.0% |
| AAGAGGCAAAGGAATCCGAA+CGG | + | 57447:16788-16807 | None:intergenic | 45.0% | |
| ACCAAAAAGCTCCAAGACCA+TGG | - | 57447:17076-17095 | MS.gene30577:intron | 45.0% | |
| ACTAAAACGCTGTAGCGTAG+CGG | + | 57447:16091-16110 | None:intergenic | 45.0% | |
| ATCCATATGGAGCTGCTAGT+AGG | + | 57447:16215-16234 | None:intergenic | 45.0% | |
| CATGCATTGAAGAGAGCTAG+AGG | - | 57447:17031-17050 | MS.gene30577:intron | 45.0% | |
| CTAAAATCTGTTGGGCCACT+CGG | - | 57447:15358-15377 | MS.gene30577:CDS | 45.0% | |
| CTCTCTTCAATGCATGCAGA+TGG | + | 57447:17027-17046 | None:intergenic | 45.0% | |
| GAATCCGACTTCAGATCATG+TGG | - | 57447:17253-17272 | MS.gene30577:CDS | 45.0% | |
| GAATGCAACATGAGCCTGAA+AGG | + | 57447:16166-16185 | None:intergenic | 45.0% | |
| GATTCCAGCACATTTCCACT+CGG | + | 57447:17133-17152 | None:intergenic | 45.0% | |
| GTCACACAATTGATGGGATG+TGG | - | 57447:15429-15448 | MS.gene30577:CDS | 45.0% | |
| GTGGAAATGTGCTGGAATCA+AGG | - | 57447:17134-17153 | MS.gene30577:intron | 45.0% | |
| GTTAATCATGCTGAGCCAGT+AGG | - | 57447:16754-16773 | MS.gene30577:intron | 45.0% | |
| TAAAATCTGTTGGGCCACTC+GGG | - | 57447:15359-15378 | MS.gene30577:CDS | 45.0% | |
| TACTTTGCCTCCTTCTCAAC+TGG | - | 57447:15878-15897 | MS.gene30577:intron | 45.0% | |
| TAGCAGCTCCATATGGATCA+CGG | - | 57447:16217-16236 | MS.gene30577:intron | 45.0% | |
| TGCATCCAAGACTAGACATC+TGG | + | 57447:15392-15411 | None:intergenic | 45.0% | |
| TGGTTACCCTTCTCATATGC+AGG | - | 57447:17273-17292 | MS.gene30577:CDS | 45.0% | |
| TGGTTGTGATCCAGTTGAGA+AGG | + | 57447:15891-15910 | None:intergenic | 45.0% | |
| TTGTGATCCAGTTGAGAAGG+AGG | + | 57447:15888-15907 | None:intergenic | 45.0% | |
| !! | AGAGTGTGGAAGGTATCATC+AGG | - | 57447:15832-15851 | MS.gene30577:intron | 45.0% |
| !! | GAAGTTGGTTCGGAACAATC+CGG | - | 57447:15039-15058 | MS.gene30577:CDS | 45.0% |
| !! | GATGTCTAGTCTTGGATGCA+AGG | - | 57447:15392-15411 | MS.gene30577:CDS | 45.0% |
| !! | GCTAAGTGTTGAACAAGCAG+AGG | + | 57447:15799-15818 | None:intergenic | 45.0% |
| !! | TGTCTAGTCTTGGATGCAAG+GGG | - | 57447:15394-15413 | MS.gene30577:CDS | 45.0% |
| ACGCTCCAGATGTCTAGTCT+TGG | - | 57447:15384-15403 | MS.gene30577:CDS | 50.0% | |
| ACTTGTGACGTCGGAACAAG+TGG | + | 57447:17200-17219 | None:intergenic | 50.0% | |
| AGAGGCAAAGGAATCCGAAC+GGG | + | 57447:16787-16806 | None:intergenic | 50.0% | |
| CTGGCTCAGCATGATTAACC+TGG | + | 57447:16753-16772 | None:intergenic | 50.0% | |
| GAATCCGAGTGGAAATGTGC+TGG | - | 57447:17126-17145 | MS.gene30577:intron | 50.0% | |
| GATTCAGAACAAGTCCCCCA+TGG | + | 57447:14871-14890 | None:intergenic | 50.0% | |
| GGTATCATCAGGTCATCTGC+AGG | - | 57447:15843-15862 | MS.gene30577:intron | 50.0% | |
| TCAACACTTAGCGAAACCGG+CGG | - | 57447:15807-15826 | MS.gene30577:intron | 50.0% | |
| TGGCGCGACTCATGTAGATA+TGG | + | 57447:17007-17026 | None:intergenic | 50.0% | |
| TTGAAGAGAGCTAGAGGCTC+TGG | - | 57447:17037-17056 | MS.gene30577:intron | 50.0% | |
| ! | ATGAAGCACTCATGGCCATG+GGG | - | 57447:14853-14872 | MS.gene30577:CDS | 50.0% |
| ! | TGGGGGACTTGTTCTGAATC+TGG | - | 57447:14871-14890 | MS.gene30577:CDS | 50.0% |
| !! | GCCATGGTCTTGGAGCTTTT+TGG | + | 57447:17080-17099 | None:intergenic | 50.0% |
| ACCTTCCACACTCTTTCCGC+CGG | + | 57447:15826-15845 | None:intergenic | 55.0% | |
| ACTACTCGGCTGAATCCGAG+TGG | - | 57447:17115-17134 | MS.gene30577:intron | 55.0% | |
| ACTCGGATTCAGCCGAGTAG+TGG | + | 57447:17116-17135 | None:intergenic | 55.0% | |
| CAGGATTTGTCAGCCGATGC+CGG | - | 57447:17292-17311 | MS.gene30577:CDS | 55.0% | |
| CAGGTCATCTGCAGGAAGTC+AGG | - | 57447:15851-15870 | MS.gene30577:intron | 55.0% | |
| CAGTAGGAATGCCTCCCGTT+CGG | - | 57447:16770-16789 | MS.gene30577:intron | 55.0% | |
| GACGTCGGAACAAGTGGTTG+TGG | + | 57447:17194-17213 | None:intergenic | 55.0% | |
| GGCCTACTAGCAGCTCCATA+TGG | - | 57447:16210-16229 | MS.gene30577:intron | 55.0% | |
| ! | AAGAGAGCTAGAGGCTCTGG+TGG | - | 57447:17040-17059 | MS.gene30577:intron | 55.0% |
| ! | TGAAGCACTCATGGCCATGG+GGG | - | 57447:14854-14873 | MS.gene30577:CDS | 55.0% |
| ATTCCGACCACCACCACCAC+CGG | + | 57447:17314-17333 | None:intergenic | 60.0% | |
| CGAAACCGGCGGAAAGAGTG+TGG | - | 57447:15818-15837 | MS.gene30577:intron | 60.0% | |
| CGGATTCAGCCGAGTAGTGG+TGG | + | 57447:17113-17132 | None:intergenic | 60.0% | |
| GATTTGTCAGCCGATGCCGG+TGG | - | 57447:17295-17314 | MS.gene30577:CDS | 60.0% | |
| GGCAAAGGAATCCGAACGGG+AGG | + | 57447:16784-16803 | None:intergenic | 60.0% | |
| ! | ACCGGCGGAAAGAGTGTGGA+AGG | - | 57447:15822-15841 | MS.gene30577:intron | 60.0% |
| !! | CGAACGGGAGGCATTCCTAC+TGG | + | 57447:16772-16791 | None:intergenic | 60.0% |
| ACCACCACCACCACCGGCAT+CGG | + | 57447:17308-17327 | None:intergenic | 65.0% | |
| TTGTCAGCCGATGCCGGTGG+TGG | - | 57447:17298-17317 | MS.gene30577:CDS | 65.0% | |
| ! | CATCTGGAGCGTGACCCGAG+TGG | + | 57447:15376-15395 | None:intergenic | 65.0% |
| !! | ATGCCGGTGGTGGTGGTGGT+CGG | - | 57447:17308-17327 | MS.gene30577:CDS | 65.0% |
| ! | TCAGCCGATGCCGGTGGTGG+TGG | - | 57447:17301-17320 | MS.gene30577:CDS | 70.0% |
| !! | GCCGATGCCGGTGGTGGTGG+TGG | - | 57447:17304-17323 | MS.gene30577:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57447 | gene | 14853 | 17360 | 14853 | ID=MS.gene30577 |
| 57447 | mRNA | 14853 | 17360 | 14853 | ID=MS.gene30577.t1;Parent=MS.gene30577 |
| 57447 | exon | 17153 | 17360 | 17153 | ID=MS.gene30577.t1.exon1;Parent=MS.gene30577.t1 |
| 57447 | CDS | 17153 | 17360 | 17153 | ID=cds.MS.gene30577.t1;Parent=MS.gene30577.t1 |
| 57447 | exon | 16296 | 16444 | 16296 | ID=MS.gene30577.t1.exon2;Parent=MS.gene30577.t1 |
| 57447 | CDS | 16296 | 16444 | 16296 | ID=cds.MS.gene30577.t1;Parent=MS.gene30577.t1 |
| 57447 | exon | 15968 | 16042 | 15968 | ID=MS.gene30577.t1.exon3;Parent=MS.gene30577.t1 |
| 57447 | CDS | 15968 | 16042 | 15968 | ID=cds.MS.gene30577.t1;Parent=MS.gene30577.t1 |
| 57447 | exon | 15292 | 15459 | 15292 | ID=MS.gene30577.t1.exon4;Parent=MS.gene30577.t1 |
| 57447 | CDS | 15292 | 15459 | 15292 | ID=cds.MS.gene30577.t1;Parent=MS.gene30577.t1 |
| 57447 | exon | 14853 | 15209 | 14853 | ID=MS.gene30577.t1.exon5;Parent=MS.gene30577.t1 |
| 57447 | CDS | 14853 | 15209 | 14853 | ID=cds.MS.gene30577.t1;Parent=MS.gene30577.t1 |
| Gene Sequence |
| Protein sequence |
