AlfalfaGEDB | MS.gene30641

M. sativa cultivar XinJiangDaYe / MS.gene30641

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30641.t1	XP_024629356.1	93.8	737	45	1	14	750	1	736	0.00E+00	1423.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30641.t1	Q9SZL8	32.5	576	379	9	19	588	69	640	8.1e-92	339.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30641.t1	A0A396JHA3	94.3	594	33	1	14	607	1	593	0.0e+00	1164.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene30641.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30641.t1	MTR_5g039760	65.534	206	46	2	14	218	1	182	1.29e-86	271
MS.gene30641.t1	MTR_7g061980	89.076	119	13	0	14	132	1	119	1.38e-68	221
MS.gene30641.t1	MTR_7g074790	61.236	178	51	1	14	191	1	160	1.14e-66	220
MS.gene30641.t1	MTR_0402s0040	44.199	181	96	4	23	200	26	204	1.08e-34	139
MS.gene30641.t1	MTR_6g051425	32.740	281	174	7	22	291	13	289	1.63e-34	135
MS.gene30641.t1	MTR_0558s0020	30.418	263	160	5	21	263	37	296	4.09e-34	132
MS.gene30641.t1	MTR_3g058090	46.825	126	43	2	557	682	5	106	7.35e-28	108
MS.gene30641.t1	MTR_8g446020	34.868	152	99	0	112	263	105	256	4.23e-26	108
MS.gene30641.t1	MTR_4g069880	73.529	68	18	0	14	81	1	68	2.37e-25	100
MS.gene30641.t1	MTR_4g102720	33.136	169	79	2	20	188	4	138	5.50e-25	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30641.t1	AT4G38180	32.465	576	379	9	19	588	69	640	1.54e-102	333
MS.gene30641.t1	AT4G15090	27.903	620	435	8	9	625	37	647	3.53e-93	309
MS.gene30641.t1	AT4G15090	27.903	620	435	8	9	625	37	647	3.53e-93	309
MS.gene30641.t1	AT4G15090	27.903	620	435	8	9	625	37	647	3.53e-93	309
MS.gene30641.t1	AT4G15090	27.903	620	435	8	9	625	37	647	3.53e-93	309
MS.gene30641.t1	AT4G15090	27.903	620	435	8	9	625	37	647	3.53e-93	309
MS.gene30641.t1	AT1G76320	30.851	564	360	12	27	581	1	543	3.66e-81	273
MS.gene30641.t1	AT1G76320	30.851	564	360	12	27	581	1	543	7.15e-81	273
MS.gene30641.t1	AT1G76320	30.851	564	360	12	27	581	1	543	7.59e-81	273
MS.gene30641.t1	AT1G76320	30.851	564	360	12	27	581	1	543	7.59e-81	273

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Find 0 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGCAAGTGGTCTAT+TGG	-	43372:17470-17489	None:intergenic	30.0%
AACATACAGTAGCAGAAAAT+AGG	-	43372:18881-18900	None:intergenic	30.0%
ACCTAAAGAAAAAAGTTCAC+AGG	+	43372:18797-18816	MS.gene30641:CDS	30.0%
ATAGAGGTTCAGTCATATTT+GGG	+	43372:17509-17528	MS.gene30641:CDS	30.0%
ATATGACTGAACCTCTATAA+TGG	-	43372:17507-17526	None:intergenic	30.0%
CAAAATGGAGTTAAACATCT+TGG	+	43372:17712-17731	MS.gene30641:CDS	30.0%
CAAAATGGTTGAAGAATTCT+AGG	-	43372:18011-18030	None:intergenic	30.0%
CATCTGATATGCATGAAAAA+AGG	-	43372:17335-17354	None:intergenic	30.0%
CCAGAAAAAAAAAAAGCAAG+TGG	-	43372:17478-17497	None:intergenic	30.0%
GAGAAAAGATATGCATATGA+AGG	+	43372:16929-16948	MS.gene30641:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
43372	gene	16309	19281	16309	ID=MS.gene30641
43372	mRNA	16309	19281	16309	ID=MS.gene30641.t1;Parent=MS.gene30641
43372	exon	16309	16323	16309	ID=MS.gene30641.t1.exon1;Parent=MS.gene30641.t1
43372	CDS	16309	16323	16309	ID=cds.MS.gene30641.t1;Parent=MS.gene30641.t1
43372	exon	16710	18818	16710	ID=MS.gene30641.t1.exon2;Parent=MS.gene30641.t1
43372	CDS	16710	18818	16710	ID=cds.MS.gene30641.t1;Parent=MS.gene30641.t1
43372	exon	19068	19154	19068	ID=MS.gene30641.t1.exon3;Parent=MS.gene30641.t1
43372	CDS	19068	19154	19068	ID=cds.MS.gene30641.t1;Parent=MS.gene30641.t1
43372	exon	19240	19281	19240	ID=MS.gene30641.t1.exon4;Parent=MS.gene30641.t1
43372	CDS	19240	19281	19240	ID=cds.MS.gene30641.t1;Parent=MS.gene30641.t1

Gene Sequence

>MS.gene30641

ATGTGTCATCATAAGGTATTTTTTTCTTTTATCTTTTTCTTTAGAATGATTGAAATGTTCATAGAAATAAGATTAACCCATAATAAAAATCAAAATTTCTATGAAAATAGAGAATAACAACACTTGATAAAGAAGATAAAACAATCGTTTTTGAACTAGTTTCAATTTATTAGGATTTGATTTTAGGAAATTTAGGGTTTTATTTAAGGATGTATAGAACCCATTGCAATGTCTACCTATACTCTGTTTCTTTTTTTTTTTTAAAGCTTGACTCATGTTATTTTGAAATAGGCAAAGGGGATTGATTGATCCTTGAATTTTTTTGTTCTTATAGTTCATTCTGTTTTAACGTTTTATTTCTTAATATTTTTTATGCCTTATGTTTTTTATTTACTTTTTAGGTTCCTTGGATAGGTTGGTCAAATATGGCATCTTCAGATGTTGATTGGAAACCAAAGATTGGAATGGGATTTGATTCCATGGAAGAGGCTAGTAAATTTTGGCATGATTATAGTTTCCGTGTTGGCTTCGGAGTTAGAGTACGTTTCACAAACAAAAAAGAAGACGGTAGTGTATCGTCATGTCGATTGGTTTGTTGTAAGGAAGGGCTAAAGAGGAAGGAGAAAAGATATGCATATGAAGGAAAATATACGAGAGCCGATATTAGAACAAATTGCCCTGTAAGAATTACACTTTCACGTAAGAATAGAAAGTTGGTCATCCATGACTTTGAAGAAGAACATAACCATGATCTACAAAATTCAGAGACAACACACATGCTTCGGTCACATAGAAAGATAACTGAAGTGCAAGCATATGAGATTGATTTGGCTCATGACTCTGGATTAAGGCAGAAGTCAACATTTCAACTTTTGAGCACACAAGCAGGGCATAGAGCTAATGTTGGATTTACAGAGGTGGATGTAAGAAACTACATCAGTGAAAGAAGAAAAAGAAGTATGGCGTATGGTGAGATTGGATGTCTTTCACGATATTTTCAACGACAATTGTTGGAGAATCCATCCTTTTTTCATGCATATCAGATGGATGTAGAAGAACATATTACAAATGTGTTTTGGTGTGATGCACAGATGATTTTGGATTACGGGTATTTTGGTGATGTTGTTTCTTTGGACACCACGTACTGTACCAACCATGCCAATAGACCACTTGCTTTTTTTTTTTCTGGTTTCAACCATTATAGAGGTTCAGTCATATTTGGGGCGGCACTAATGTATGATGAGACAAGTGAGTCATTTAGATGGTTGTTTGATACATTCTTACAGGCACACAACAACAAAAAACCAAAGACGATCTTCACTGACCAAGATCAAGCAATGGCAAGGGCAGTTGTAGATGTGATGCCCGAGACTCATCATGGTTTATGCACATGGCATTTGTTACAAAATGGAGTTAAACATCTTGGGAACTTGATGAAGGGAGGATCTTCGTTGCTTAGTGATATCAAAAAATGCATGTATGATATTGACATTGAAGCAGATTTTGAGAAACTTTGGTTTGACATCATCCACGAATTTAATATTCACGACAAATCTTGGATCAAGTCCACTTATGAACTTAAAAAAAAATGGGCTGCATGTTATATGAAGGGAGTGTTAACACTTGGCATCCGTAGTACACAAGTTAGTGAAAGTTTGAATGCTCACTTTAAGTCTTGTATGAAACCGAATGTGAATATCCTAGAATTCTTCAACCATTTTGAAAGAGTTGTTGAGGACAAGAGAGCAAAAGAATTGAGTTGTGTGTATGAATCCTCACATAAGCTTGCAAAGTTAGCATATGAAACTGCACCAATACTAATCCAAATGGGAAAAATATACACACACACTGTATTTGAATTGTTTCAAGATGAGTTTAAGTTATTCTTAACTTTAAATGTACCAACTAGACATGAATCTGAATCTCTTTGTGAATATGTCATCACTAAGGCAAAACATGAAGGATCTTGGAGAGTTTCATTTAACCGTGTTTCAAACTCCATCACTTGTAGTTGTAGGAAGTTTGATGCTTTTGGCATACTTTGTTCACATGCTTTAAAAGTGTTTGAATTGAATGATGTTAAGGTAGTTCCTGAGAACTATATTTTAAAAAGGTGGACAAGAGAAGCCCATTATGGCGTTGTGCAAGATTTTAGGGGAAAGGAGGTTGAAGGAGATCCTAACTTGTCTAGAAATCGAATGTTCAGACAAGTTGTCTCTAAGTTCATTAAAGCGGCAACTGAAGCATCACCCAAGGAAGAATGGCTCAAGTTTCTTGATAATGGTGTAGATGACATGTTCAAGAAAATAATGGAACTTCGCGCACAAGCTATGGACAATAACGGTGATAATGGTGCTCGTCCAGAAATTGTGAGTTCGGATGTTATGCAAGCAAAGGGGTTCAGGGTACGACCCGGTTCAAAGAGAATTAAGCGATACAAAAGTTGTCTGGAAAAACAGCATAGTCGCGCTACATCTAGCCGCGCTCCACCTAAAGAAAAAAGTTCACAGGTATATGAGTTGGTATTTAGAGTACTTGTTTTAATTTTACTTGTTTTGGTGACTGTCCACCTATTTTCTGCTACTGTATGTTTATATGTTCAATAGAGATTATTTAAATTGAATCACTAATATTAGTTATAGTATTATTATGTTATTGATCATATGCCTTGACAAAGCTGCTATTGCTTGTTTATATTTTCTGCTACTGCCATGATTTTACATGTATCTTAGCTTAATAATTTTACATAATCATTTTAGGTTGATGGAGTATCTTGTTCTGCGCCTCCGACTTATGAGTCCCCACAAGTACATGAGGATCAAGTCAATTACACAGCCATGCTAATGGTAATTTCAAAAACAAATTCATAAGGAACTATTCATACATTTAACAAGTATCGTGATGCTAATTTTTAAGTTGTTATTAATGTAGGCAATAGGGGGGCCAACCTATTTGGATGGAATGAATGCATAG

Protein sequence

>MS.gene30641.t1

MCHHKVPWIGWSNMASSDVDWKPKIGMGFDSMEEASKFWHDYSFRVGFGVRVRFTNKKEDGSVSSCRLVCCKEGLKRKEKRYAYEGKYTRADIRTNCPVRITLSRKNRKLVIHDFEEEHNHDLQNSETTHMLRSHRKITEVQAYEIDLAHDSGLRQKSTFQLLSTQAGHRANVGFTEVDVRNYISERRKRSMAYGEIGCLSRYFQRQLLENPSFFHAYQMDVEEHITNVFWCDAQMILDYGYFGDVVSLDTTYCTNHANRPLAFFFSGFNHYRGSVIFGAALMYDETSESFRWLFDTFLQAHNNKKPKTIFTDQDQAMARAVVDVMPETHHGLCTWHLLQNGVKHLGNLMKGGSSLLSDIKKCMYDIDIEADFEKLWFDIIHEFNIHDKSWIKSTYELKKKWAACYMKGVLTLGIRSTQVSESLNAHFKSCMKPNVNILEFFNHFERVVEDKRAKELSCVYESSHKLAKLAYETAPILIQMGKIYTHTVFELFQDEFKLFLTLNVPTRHESESLCEYVITKAKHEGSWRVSFNRVSNSITCSCRKFDAFGILCSHALKVFELNDVKVVPENYILKRWTREAHYGVVQDFRGKEVEGDPNLSRNRMFRQVVSKFIKAATEASPKEEWLKFLDNGVDDMFKKIMELRAQAMDNNGDNGARPEIVSSDVMQAKGFRVRPGSKRIKRYKSCLEKQHSRATSSRAPPKEKSSQVDGVSCSAPPTYESPQVHEDQVNYTAMLMAIGGPTYLDGMNA