Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30641.t1 | XP_024629356.1 | 93.8 | 737 | 45 | 1 | 14 | 750 | 1 | 736 | 0.00E+00 | 1423.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30641.t1 | Q9SZL8 | 32.5 | 576 | 379 | 9 | 19 | 588 | 69 | 640 | 8.1e-92 | 339.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30641.t1 | A0A396JHA3 | 94.3 | 594 | 33 | 1 | 14 | 607 | 1 | 593 | 0.0e+00 | 1164.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene30641.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30641.t1 | MTR_5g039760 | 65.534 | 206 | 46 | 2 | 14 | 218 | 1 | 182 | 1.29e-86 | 271 |
| MS.gene30641.t1 | MTR_7g061980 | 89.076 | 119 | 13 | 0 | 14 | 132 | 1 | 119 | 1.38e-68 | 221 |
| MS.gene30641.t1 | MTR_7g074790 | 61.236 | 178 | 51 | 1 | 14 | 191 | 1 | 160 | 1.14e-66 | 220 |
| MS.gene30641.t1 | MTR_0402s0040 | 44.199 | 181 | 96 | 4 | 23 | 200 | 26 | 204 | 1.08e-34 | 139 |
| MS.gene30641.t1 | MTR_6g051425 | 32.740 | 281 | 174 | 7 | 22 | 291 | 13 | 289 | 1.63e-34 | 135 |
| MS.gene30641.t1 | MTR_0558s0020 | 30.418 | 263 | 160 | 5 | 21 | 263 | 37 | 296 | 4.09e-34 | 132 |
| MS.gene30641.t1 | MTR_3g058090 | 46.825 | 126 | 43 | 2 | 557 | 682 | 5 | 106 | 7.35e-28 | 108 |
| MS.gene30641.t1 | MTR_8g446020 | 34.868 | 152 | 99 | 0 | 112 | 263 | 105 | 256 | 4.23e-26 | 108 |
| MS.gene30641.t1 | MTR_4g069880 | 73.529 | 68 | 18 | 0 | 14 | 81 | 1 | 68 | 2.37e-25 | 100 |
| MS.gene30641.t1 | MTR_4g102720 | 33.136 | 169 | 79 | 2 | 20 | 188 | 4 | 138 | 5.50e-25 | 104 |
| MS.gene30641.t1 | MTR_6g090505 | 35.099 | 151 | 98 | 0 | 112 | 262 | 80 | 230 | 9.25e-25 | 107 |
| MS.gene30641.t1 | MTR_1g070355 | 27.311 | 238 | 164 | 4 | 29 | 260 | 80 | 314 | 5.00e-22 | 101 |
| MS.gene30641.t1 | MTR_1g083640 | 25.514 | 243 | 158 | 5 | 16 | 238 | 47 | 286 | 4.78e-21 | 94.7 |
| MS.gene30641.t1 | MTR_7g446510 | 29.319 | 191 | 134 | 1 | 82 | 272 | 140 | 329 | 1.25e-16 | 82.4 |
| MS.gene30641.t1 | MTR_2g070590 | 42.857 | 105 | 56 | 3 | 23 | 124 | 17 | 120 | 2.31e-16 | 76.3 |
| MS.gene30641.t1 | MTR_5g015480 | 40.152 | 132 | 74 | 4 | 23 | 151 | 56 | 185 | 5.95e-16 | 79.0 |
| MS.gene30641.t1 | MTR_6g022070 | 28.571 | 175 | 118 | 3 | 318 | 491 | 1 | 169 | 6.03e-16 | 80.5 |
| MS.gene30641.t1 | MTR_7g446480 | 30.460 | 174 | 120 | 1 | 99 | 272 | 142 | 314 | 7.65e-16 | 79.7 |
| MS.gene30641.t1 | MTR_4g035820 | 24.845 | 322 | 220 | 10 | 23 | 333 | 75 | 385 | 1.33e-15 | 81.3 |
| MS.gene30641.t1 | MTR_2g099430 | 47.727 | 88 | 44 | 2 | 46 | 132 | 26 | 112 | 1.78e-15 | 73.6 |
| MS.gene30641.t1 | MTR_7g113010 | 40.157 | 127 | 60 | 3 | 23 | 147 | 457 | 569 | 3.06e-15 | 80.1 |
| MS.gene30641.t1 | MTR_7g446520 | 26.050 | 238 | 161 | 2 | 29 | 266 | 94 | 316 | 8.10e-15 | 77.0 |
| MS.gene30641.t1 | MTR_6g017200 | 43.750 | 96 | 50 | 3 | 23 | 115 | 58 | 152 | 2.30e-14 | 71.6 |
| MS.gene30641.t1 | MTR_5g076070 | 23.144 | 229 | 171 | 3 | 26 | 251 | 56 | 282 | 2.52e-13 | 71.6 |
| MS.gene30641.t1 | MTR_1g013060 | 26.267 | 217 | 153 | 4 | 14 | 224 | 15 | 230 | 5.99e-13 | 69.3 |
| MS.gene30641.t1 | MTR_1g086270 | 29.688 | 128 | 71 | 2 | 318 | 445 | 1 | 109 | 6.39e-13 | 66.2 |
| MS.gene30641.t1 | MTR_0337s0040 | 27.731 | 119 | 86 | 0 | 112 | 230 | 106 | 224 | 1.58e-12 | 68.2 |
| MS.gene30641.t1 | MTR_4g117620 | 81.818 | 33 | 6 | 0 | 706 | 738 | 35 | 67 | 3.89e-12 | 62.8 |
| MS.gene30641.t1 | MTR_1g019850 | 34.375 | 128 | 75 | 3 | 13 | 138 | 60 | 180 | 3.96e-12 | 67.4 |
| MS.gene30641.t1 | MTR_5g045210 | 30.508 | 118 | 75 | 2 | 559 | 670 | 20 | 136 | 5.28e-12 | 65.9 |
| MS.gene30641.t1 | MTR_1g057920 | 40.964 | 83 | 47 | 2 | 23 | 104 | 34 | 115 | 6.27e-12 | 63.5 |
| MS.gene30641.t1 | MTR_2g014100 | 24.762 | 210 | 133 | 6 | 16 | 204 | 40 | 245 | 1.17e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30641.t1 | AT4G38180 | 32.465 | 576 | 379 | 9 | 19 | 588 | 69 | 640 | 1.54e-102 | 333 |
| MS.gene30641.t1 | AT4G15090 | 27.903 | 620 | 435 | 8 | 9 | 625 | 37 | 647 | 3.53e-93 | 309 |
| MS.gene30641.t1 | AT4G15090 | 27.903 | 620 | 435 | 8 | 9 | 625 | 37 | 647 | 3.53e-93 | 309 |
| MS.gene30641.t1 | AT4G15090 | 27.903 | 620 | 435 | 8 | 9 | 625 | 37 | 647 | 3.53e-93 | 309 |
| MS.gene30641.t1 | AT4G15090 | 27.903 | 620 | 435 | 8 | 9 | 625 | 37 | 647 | 3.53e-93 | 309 |
| MS.gene30641.t1 | AT4G15090 | 27.903 | 620 | 435 | 8 | 9 | 625 | 37 | 647 | 3.53e-93 | 309 |
| MS.gene30641.t1 | AT1G76320 | 30.851 | 564 | 360 | 12 | 27 | 581 | 1 | 543 | 3.66e-81 | 273 |
| MS.gene30641.t1 | AT1G76320 | 30.851 | 564 | 360 | 12 | 27 | 581 | 1 | 543 | 7.15e-81 | 273 |
| MS.gene30641.t1 | AT1G76320 | 30.851 | 564 | 360 | 12 | 27 | 581 | 1 | 543 | 7.59e-81 | 273 |
| MS.gene30641.t1 | AT1G76320 | 30.851 | 564 | 360 | 12 | 27 | 581 | 1 | 543 | 7.59e-81 | 273 |
| MS.gene30641.t1 | AT3G22170 | 27.955 | 626 | 396 | 12 | 19 | 625 | 66 | 655 | 1.29e-77 | 267 |
| MS.gene30641.t1 | AT3G22170 | 27.955 | 626 | 396 | 12 | 19 | 625 | 66 | 655 | 1.29e-77 | 267 |
| MS.gene30641.t1 | AT3G06250 | 28.336 | 607 | 380 | 13 | 22 | 623 | 189 | 745 | 1.66e-77 | 265 |
| MS.gene30641.t1 | AT3G06250 | 35.780 | 109 | 54 | 3 | 17 | 123 | 22 | 116 | 5.57e-12 | 69.7 |
| MS.gene30641.t1 | AT3G06250 | 28.336 | 607 | 380 | 13 | 22 | 623 | 189 | 745 | 1.66e-77 | 265 |
| MS.gene30641.t1 | AT3G06250 | 35.780 | 109 | 54 | 3 | 17 | 123 | 22 | 116 | 5.57e-12 | 69.7 |
| MS.gene30641.t1 | AT3G06250 | 28.336 | 607 | 380 | 13 | 22 | 623 | 189 | 745 | 1.66e-77 | 265 |
| MS.gene30641.t1 | AT3G06250 | 35.780 | 109 | 54 | 3 | 17 | 123 | 22 | 116 | 5.57e-12 | 69.7 |
| MS.gene30641.t1 | AT5G18960 | 27.467 | 608 | 387 | 12 | 22 | 623 | 210 | 769 | 4.31e-73 | 253 |
| MS.gene30641.t1 | AT5G18960 | 27.467 | 608 | 387 | 12 | 22 | 623 | 210 | 769 | 4.31e-73 | 253 |
| MS.gene30641.t1 | AT2G27110 | 27.703 | 592 | 394 | 12 | 22 | 610 | 48 | 608 | 4.60e-67 | 238 |
| MS.gene30641.t1 | AT2G27110 | 27.703 | 592 | 394 | 12 | 22 | 610 | 48 | 608 | 4.60e-67 | 238 |
| MS.gene30641.t1 | AT4G19990 | 26.190 | 588 | 379 | 9 | 26 | 596 | 24 | 573 | 3.68e-64 | 228 |
| MS.gene30641.t1 | AT4G19990 | 26.190 | 588 | 379 | 9 | 26 | 596 | 24 | 573 | 3.68e-64 | 228 |
| MS.gene30641.t1 | AT4G19990 | 26.190 | 588 | 379 | 9 | 26 | 596 | 24 | 573 | 5.50e-64 | 228 |
| MS.gene30641.t1 | AT4G19990 | 26.190 | 588 | 379 | 9 | 26 | 596 | 24 | 573 | 6.17e-64 | 228 |
| MS.gene30641.t1 | AT4G19990 | 26.190 | 588 | 379 | 9 | 26 | 596 | 24 | 573 | 6.17e-64 | 228 |
| MS.gene30641.t1 | AT4G19990 | 26.190 | 588 | 379 | 9 | 26 | 596 | 38 | 587 | 6.51e-64 | 228 |
| MS.gene30641.t1 | AT2G32250 | 26.667 | 645 | 399 | 15 | 26 | 660 | 41 | 621 | 1.34e-63 | 227 |
| MS.gene30641.t1 | AT2G32250 | 26.667 | 645 | 399 | 15 | 26 | 660 | 41 | 621 | 2.84e-63 | 226 |
| MS.gene30641.t1 | AT2G32250 | 26.667 | 645 | 399 | 15 | 26 | 660 | 41 | 621 | 2.84e-63 | 226 |
| MS.gene30641.t1 | AT2G32250 | 26.667 | 645 | 399 | 15 | 26 | 660 | 41 | 621 | 2.84e-63 | 226 |
| MS.gene30641.t1 | AT2G32250 | 26.667 | 645 | 399 | 15 | 26 | 660 | 41 | 621 | 3.09e-63 | 226 |
| MS.gene30641.t1 | AT2G32250 | 26.667 | 645 | 399 | 15 | 26 | 660 | 41 | 621 | 3.09e-63 | 226 |
| MS.gene30641.t1 | AT2G32250 | 26.553 | 644 | 399 | 15 | 27 | 660 | 1 | 580 | 9.41e-63 | 224 |
| MS.gene30641.t1 | AT2G32250 | 26.553 | 644 | 399 | 15 | 27 | 660 | 1 | 580 | 1.10e-62 | 224 |
| MS.gene30641.t1 | AT4G19990 | 26.796 | 515 | 335 | 7 | 86 | 596 | 40 | 516 | 4.84e-59 | 213 |
| MS.gene30641.t1 | AT4G38170 | 28.825 | 451 | 291 | 9 | 203 | 641 | 24 | 456 | 1.85e-58 | 208 |
| MS.gene30641.t1 | AT1G52520 | 26.132 | 574 | 386 | 15 | 23 | 580 | 85 | 636 | 6.38e-58 | 210 |
| MS.gene30641.t1 | AT2G27110 | 28.814 | 413 | 288 | 5 | 200 | 610 | 55 | 463 | 1.09e-56 | 206 |
| MS.gene30641.t1 | AT1G80010 | 25.042 | 591 | 414 | 12 | 23 | 595 | 95 | 674 | 1.33e-49 | 186 |
| MS.gene30641.t1 | AT1G10240 | 25.044 | 571 | 400 | 12 | 23 | 579 | 48 | 604 | 7.82e-47 | 177 |
| MS.gene30641.t1 | AT1G10240 | 25.044 | 571 | 400 | 12 | 23 | 579 | 48 | 604 | 7.82e-47 | 177 |
| MS.gene30641.t1 | AT5G28530 | 23.052 | 616 | 405 | 15 | 18 | 597 | 50 | 632 | 9.72e-43 | 166 |
| MS.gene30641.t1 | AT5G28530 | 23.052 | 616 | 405 | 15 | 18 | 597 | 50 | 632 | 9.72e-43 | 166 |
| MS.gene30641.t1 | AT5G28530 | 21.967 | 610 | 423 | 12 | 18 | 597 | 50 | 636 | 1.30e-42 | 165 |
| MS.gene30641.t1 | AT5G28530 | 21.429 | 602 | 369 | 16 | 18 | 597 | 50 | 569 | 3.73e-29 | 124 |
| MS.gene30641.t1 | AT5G28530 | 20.302 | 596 | 387 | 13 | 18 | 597 | 50 | 573 | 4.60e-29 | 123 |
Find 0 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTAAATAAAAAACATA+AGG | - | 43372:16687-16706 | None:intergenic | 10.0% |
| !! | TTATGAACTTAAAAAAAAAT+GGG | + | 43372:17879-17898 | MS.gene30641:CDS | 10.0% |
| !!! | AGAAATTTTGATTTTTATTA+TGG | - | 43372:16389-16408 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTATTTACTTTTT+AGG | + | 43372:16688-16707 | MS.gene30641:intron | 10.0% |
| !!! | GAAATTTTGATTTTTATTAT+GGG | - | 43372:16388-16407 | None:intergenic | 10.0% |
| !!! | TAATTTTACATAATCATTTT+AGG | + | 43372:19046-19065 | MS.gene30641:intron | 10.0% |
| !! | ATTTCAAAAACAAATTCATA+AGG | + | 43372:19158-19177 | MS.gene30641:intron | 15.0% |
| !! | CTTATGAACTTAAAAAAAAA+TGG | + | 43372:17878-17897 | MS.gene30641:CDS | 15.0% |
| !! | TATAAGAACAAAAAAATTCA+AGG | - | 43372:16622-16641 | None:intergenic | 15.0% |
| !!! | ATTTATTAGGATTTGATTTT+AGG | + | 43372:16473-16492 | MS.gene30641:intron | 15.0% |
| !!! | ATTTGATTTTAGGAAATTTA+GGG | + | 43372:16483-16502 | MS.gene30641:intron | 15.0% |
| !!! | TGTTTTAATTTTACTTGTTT+TGG | + | 43372:18845-18864 | MS.gene30641:intron | 15.0% |
| !!! | TTTTAAGTTGTTATTAATGT+AGG | + | 43372:19218-19237 | MS.gene30641:intron | 15.0% |
| !!! | TTTTTTTTTAAGTTCATAAG+TGG | - | 43372:17878-17897 | None:intergenic | 15.0% |
| !! | AAAAAAAAGAAACAGAGTAT+AGG | - | 43372:16547-16566 | None:intergenic | 20.0% |
| !!! | AACATATTACAAATGTGTTT+TGG | + | 43372:17365-17384 | MS.gene30641:CDS | 20.0% |
| !!! | AGAACTATATTTTAAAAAGG+TGG | + | 43372:18403-18422 | MS.gene30641:CDS | 20.0% |
| !!! | CTGAGAACTATATTTTAAAA+AGG | + | 43372:18400-18419 | MS.gene30641:CDS | 20.0% |
| !!! | CTTTTTAAAATATAGTTCTC+AGG | - | 43372:18402-18421 | None:intergenic | 20.0% |
| !!! | GAAATTTAGGGTTTTATTTA+AGG | + | 43372:16495-16514 | MS.gene30641:intron | 20.0% |
| !!! | GATTTGATTTTAGGAAATTT+AGG | + | 43372:16482-16501 | MS.gene30641:intron | 20.0% |
| !!! | TGAACTAGTTTCAATTTATT+AGG | + | 43372:16460-16479 | MS.gene30641:intron | 20.0% |
| ! | AAAATGGAGTTAAACATCTT+GGG | + | 43372:17713-17732 | MS.gene30641:CDS | 25.0% |
| ! | CTAAGATACATGTAAAATCA+TGG | - | 43372:19021-19040 | None:intergenic | 25.0% |
| ! | GTTTGAATTGAATGATGTTA+AGG | + | 43372:18371-18390 | MS.gene30641:CDS | 25.0% |
| ! | TGAAAGAAGAAAAAGAAGTA+TGG | + | 43372:17249-17268 | MS.gene30641:CDS | 25.0% |
| ! | TGACATGTTCAAGAAAATAA+TGG | + | 43372:18599-18618 | MS.gene30641:CDS | 25.0% |
| ! | TGTTATTAATGTAGGCAATA+GGG | + | 43372:19226-19245 | MS.gene30641:intron | 25.0% |
| ! | TTAATATTCACGACAAATCT+TGG | + | 43372:17845-17864 | MS.gene30641:CDS | 25.0% |
| ! | TTCACAAACAAAAAAGAAGA+CGG | + | 43372:16854-16873 | MS.gene30641:CDS | 25.0% |
| !! | ATATTTTCAACGACAATTGT+TGG | + | 43372:17300-17319 | MS.gene30641:CDS | 25.0% |
| !! | TTGTTATTAATGTAGGCAAT+AGG | + | 43372:19225-19244 | MS.gene30641:intron | 25.0% |
| !!! | AATTCTAGGATATTCACATT+CGG | - | 43372:17997-18016 | None:intergenic | 25.0% |
| !!! | ACATAATCATTTTAGGTTGA+TGG | + | 43372:19053-19072 | MS.gene30641:intron | 25.0% |
| !!! | GACTCATGTTATTTTGAAAT+AGG | + | 43372:16578-16597 | MS.gene30641:intron | 25.0% |
| !!! | GTTATTTTGAAATAGGCAAA+GGG | + | 43372:16585-16604 | MS.gene30641:intron | 25.0% |
| !!! | TATTTACTTTTTAGGTTCCT+TGG | + | 43372:16696-16715 | MS.gene30641:intron | 25.0% |
| !!! | TGTTATTTTGAAATAGGCAA+AGG | + | 43372:16584-16603 | MS.gene30641:intron | 25.0% |
| !!! | TTATTTTGAAATAGGCAAAG+GGG | + | 43372:16586-16605 | MS.gene30641:intron | 25.0% |
| !!! | TTTTGAAATTACCATTAGCA+TGG | - | 43372:19147-19166 | None:intergenic | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | - | 43372:17470-17489 | None:intergenic | 30.0% | |
| AACATACAGTAGCAGAAAAT+AGG | - | 43372:18881-18900 | None:intergenic | 30.0% | |
| ACCTAAAGAAAAAAGTTCAC+AGG | + | 43372:18797-18816 | MS.gene30641:CDS | 30.0% | |
| ATAGAGGTTCAGTCATATTT+GGG | + | 43372:17509-17528 | MS.gene30641:CDS | 30.0% | |
| ATATGACTGAACCTCTATAA+TGG | - | 43372:17507-17526 | None:intergenic | 30.0% | |
| CAAAATGGAGTTAAACATCT+TGG | + | 43372:17712-17731 | MS.gene30641:CDS | 30.0% | |
| CAAAATGGTTGAAGAATTCT+AGG | - | 43372:18011-18030 | None:intergenic | 30.0% | |
| CATCTGATATGCATGAAAAA+AGG | - | 43372:17335-17354 | None:intergenic | 30.0% | |
| CCAGAAAAAAAAAAAGCAAG+TGG | - | 43372:17478-17497 | None:intergenic | 30.0% | |
| GAGAAAAGATATGCATATGA+AGG | + | 43372:16929-16948 | MS.gene30641:CDS | 30.0% | |
| GTTATTAATGTAGGCAATAG+GGG | + | 43372:19227-19246 | MS.gene30641:intron | 30.0% | |
| GTTGTTTGATACATTCTTAC+AGG | + | 43372:17573-17592 | MS.gene30641:CDS | 30.0% | |
| TATAGAGGTTCAGTCATATT+TGG | + | 43372:17508-17527 | MS.gene30641:CDS | 30.0% | |
| TATGTTCTTCTTCAAAGTCA+TGG | - | 43372:17033-17052 | None:intergenic | 30.0% | |
| TGATATGCATGAAAAAAGGA+TGG | - | 43372:17331-17350 | None:intergenic | 30.0% | |
| TGTCGTGAATATTAAATTCG+TGG | - | 43372:17840-17859 | None:intergenic | 30.0% | |
| TGTCTCTAAGTTCATTAAAG+CGG | + | 43372:18521-18540 | MS.gene30641:CDS | 30.0% | |
| TTATTAATGTAGGCAATAGG+GGG | + | 43372:19228-19247 | MS.gene30641:intron | 30.0% | |
| TTCACGTAAGAATAGAAAGT+TGG | + | 43372:17003-17022 | MS.gene30641:CDS | 30.0% | |
| TTGTGAATATGTCATCACTA+AGG | + | 43372:18236-18255 | MS.gene30641:CDS | 30.0% | |
| ! | ACATGGCATTTGTTACAAAA+TGG | + | 43372:17697-17716 | MS.gene30641:CDS | 30.0% |
| ! | AGGGCAATTTGTTCTAATAT+CGG | - | 43372:16969-16988 | None:intergenic | 30.0% |
| ! | ATTCGATTTCTAGACAAGTT+AGG | - | 43372:18489-18508 | None:intergenic | 30.0% |
| ! | ATTTTGGATTACGGGTATTT+TGG | + | 43372:17403-17422 | MS.gene30641:CDS | 30.0% |
| ! | GTGAAAGTGTAATTCTTACA+GGG | - | 43372:16988-17007 | None:intergenic | 30.0% |
| ! | GTGTGTATATTTTTCCCATT+TGG | - | 43372:18134-18153 | None:intergenic | 30.0% |
| ! | TCTCTGAATTTTGTAGATCA+TGG | - | 43372:17057-17076 | None:intergenic | 30.0% |
| ! | TTTCACTAACTTGTGTACTA+CGG | - | 43372:17942-17961 | None:intergenic | 30.0% |
| !! | AAGCAGATTTTGAGAAACTT+TGG | + | 43372:17803-17822 | MS.gene30641:CDS | 30.0% |
| !! | TTTCCCATTTGGATTAGTAT+TGG | - | 43372:18123-18142 | None:intergenic | 30.0% |
| !!! | ACCTGTGAACTTTTTTCTTT+AGG | - | 43372:18801-18820 | None:intergenic | 30.0% |
| !!! | CCACTTGCTTTTTTTTTTTC+TGG | + | 43372:17475-17494 | MS.gene30641:CDS | 30.0% |
| !!! | CTTTTTTCATGCATATCAGA+TGG | + | 43372:17333-17352 | MS.gene30641:CDS | 30.0% |
| !!! | TGTGAACTTTTTTCTTTAGG+TGG | - | 43372:18798-18817 | None:intergenic | 30.0% |
| !!! | TTTTGGTGATGTTGTTTCTT+TGG | + | 43372:17420-17439 | MS.gene30641:CDS | 30.0% |
| AAGTTCACAGGTATATGAGT+TGG | + | 43372:18809-18828 | MS.gene30641:intron | 35.0% | |
| AGACAAGTGAGTCATTTAGA+TGG | + | 43372:17551-17570 | MS.gene30641:CDS | 35.0% | |
| AGCTAATGTTGGATTTACAG+AGG | + | 43372:17204-17223 | MS.gene30641:CDS | 35.0% | |
| AGTATAGGTAGACATTGCAA+TGG | - | 43372:16532-16551 | None:intergenic | 35.0% | |
| ATACAGTAGCAGAAAATAGG+TGG | - | 43372:18878-18897 | None:intergenic | 35.0% | |
| ATATTTGACCAACCTATCCA+AGG | - | 43372:16716-16735 | None:intergenic | 35.0% | |
| ATCACTAAGGCAAAACATGA+AGG | + | 43372:18249-18268 | MS.gene30641:CDS | 35.0% | |
| ATGGACAATAACGGTGATAA+TGG | + | 43372:18639-18658 | MS.gene30641:CDS | 35.0% | |
| CATGATTATAGTTTCCGTGT+TGG | + | 43372:16812-16831 | MS.gene30641:CDS | 35.0% | |
| CCTCAACAACTCTTTCAAAA+TGG | - | 43372:18026-18045 | None:intergenic | 35.0% | |
| GATTCAGATTCATGTCTAGT+TGG | - | 43372:18213-18232 | None:intergenic | 35.0% | |
| GCAAGCATATGAGATTGATT+TGG | + | 43372:17117-17136 | MS.gene30641:CDS | 35.0% | |
| GCACCAATACTAATCCAAAT+GGG | + | 43372:18117-18136 | MS.gene30641:CDS | 35.0% | |
| GTATAGGTAGACATTGCAAT+GGG | - | 43372:16531-16550 | None:intergenic | 35.0% | |
| GTTGATTGGAAACCAAAGAT+TGG | + | 43372:16749-16768 | MS.gene30641:CDS | 35.0% | |
| TAACTTTGCAAGCTTATGTG+AGG | - | 43372:18085-18104 | None:intergenic | 35.0% | |
| TAAGCGATACAAAAGTTGTC+TGG | + | 43372:18737-18756 | MS.gene30641:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | + | 43372:17207-17226 | MS.gene30641:CDS | 35.0% | |
| TAGAGGTTCAGTCATATTTG+GGG | + | 43372:17510-17529 | MS.gene30641:CDS | 35.0% | |
| TATTAATGTAGGCAATAGGG+GGG | + | 43372:19229-19248 | MS.gene30641:intron | 35.0% | |
| TCAAATCCCATTCCAATCTT+TGG | - | 43372:16764-16783 | None:intergenic | 35.0% | |
| TCGCTTAATTCTCTTTGAAC+CGG | - | 43372:18724-18743 | None:intergenic | 35.0% | |
| TGCACCAATACTAATCCAAA+TGG | + | 43372:18116-18135 | MS.gene30641:CDS | 35.0% | |
| TGCATTCATTCCATCCAAAT+AGG | - | 43372:19259-19278 | None:intergenic | 35.0% | |
| TGGAAACCAAAGATTGGAAT+GGG | + | 43372:16755-16774 | MS.gene30641:CDS | 35.0% | |
| TGGCTCAAGTTTCTTGATAA+TGG | + | 43372:18570-18589 | MS.gene30641:CDS | 35.0% | |
| TTCATTCCATCCAAATAGGT+TGG | - | 43372:19255-19274 | None:intergenic | 35.0% | |
| TTGGAAACCAAAGATTGGAA+TGG | + | 43372:16754-16773 | MS.gene30641:CDS | 35.0% | |
| ! | AAATTTACTAGCCTCTTCCA+TGG | - | 43372:16789-16808 | None:intergenic | 35.0% |
| ! | AAGTGATGGAGTTTGAAACA+CGG | - | 43372:18296-18315 | None:intergenic | 35.0% |
| ! | AGAAAAAGAAGTATGGCGTA+TGG | + | 43372:17256-17275 | MS.gene30641:CDS | 35.0% |
| ! | CACAGATGATTTTGGATTAC+GGG | + | 43372:17395-17414 | MS.gene30641:CDS | 35.0% |
| ! | CGTGAAAGTGTAATTCTTAC+AGG | - | 43372:16989-17008 | None:intergenic | 35.0% |
| ! | GCACAGATGATTTTGGATTA+CGG | + | 43372:17394-17413 | MS.gene30641:CDS | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | + | 43372:17493-17512 | MS.gene30641:CDS | 35.0% |
| ! | TGGAAGAGGCTAGTAAATTT+TGG | + | 43372:16789-16808 | MS.gene30641:CDS | 35.0% |
| ! | TGTAGGAAGTTTGATGCTTT+TGG | + | 43372:18321-18340 | MS.gene30641:CDS | 35.0% |
| !! | ATGTCGATTGGTTTGTTGTA+AGG | + | 43372:16889-16908 | MS.gene30641:CDS | 35.0% |
| !! | CCATTTTGAAAGAGTTGTTG+AGG | + | 43372:18023-18042 | MS.gene30641:CDS | 35.0% |
| !! | GATTGGTTTGTTGTAAGGAA+GGG | + | 43372:16894-16913 | MS.gene30641:CDS | 35.0% |
| !! | TTGGATAGGTTGGTCAAATA+TGG | + | 43372:16715-16734 | MS.gene30641:CDS | 35.0% |
| !!! | ACTTTTTAGGTTCCTTGGAT+AGG | + | 43372:16701-16720 | MS.gene30641:intron | 35.0% |
| AAACTTGAGCCATTCTTCCT+TGG | - | 43372:18562-18581 | None:intergenic | 40.0% | |
| AACTTGAGCCATTCTTCCTT+GGG | - | 43372:18561-18580 | None:intergenic | 40.0% | |
| AATCTTGCACAACGCCATAA+TGG | - | 43372:18440-18459 | None:intergenic | 40.0% | |
| ACATCCGAACTCACAATTTC+TGG | - | 43372:18672-18691 | None:intergenic | 40.0% | |
| ACATCTTGGGAACTTGATGA+AGG | + | 43372:17726-17745 | MS.gene30641:CDS | 40.0% | |
| ACTCCATCACTTGTAGTTGT+AGG | + | 43372:18304-18323 | MS.gene30641:CDS | 40.0% | |
| ACTTGATCCTCATGTACTTG+TGG | - | 43372:19113-19132 | None:intergenic | 40.0% | |
| AGGCAAAACATGAAGGATCT+TGG | + | 43372:18256-18275 | MS.gene30641:CDS | 40.0% | |
| ATCTTGCACAACGCCATAAT+GGG | - | 43372:18439-18458 | None:intergenic | 40.0% | |
| CAATTACACAGCCATGCTAA+TGG | + | 43372:19133-19152 | MS.gene30641:CDS | 40.0% | |
| CATAAACCATGATGAGTCTC+GGG | - | 43372:17676-17695 | None:intergenic | 40.0% | |
| CATCTTGGGAACTTGATGAA+GGG | + | 43372:17727-17746 | MS.gene30641:CDS | 40.0% | |
| CGCTTAATTCTCTTTGAACC+GGG | - | 43372:18723-18742 | None:intergenic | 40.0% | |
| CTCATCATGGTTTATGCACA+TGG | + | 43372:17680-17699 | MS.gene30641:CDS | 40.0% | |
| CTTCCTACAACTACAAGTGA+TGG | - | 43372:18310-18329 | None:intergenic | 40.0% | |
| CTTGATCCTCATGTACTTGT+GGG | - | 43372:19112-19131 | None:intergenic | 40.0% | |
| GCACAAGCTATGGACAATAA+CGG | + | 43372:18630-18649 | MS.gene30641:CDS | 40.0% | |
| GCATAAACCATGATGAGTCT+CGG | - | 43372:17677-17696 | None:intergenic | 40.0% | |
| TAGTGTATCGTCATGTCGAT+TGG | + | 43372:16877-16896 | MS.gene30641:CDS | 40.0% | |
| TCGGATGTTATGCAAGCAAA+GGG | + | 43372:18684-18703 | MS.gene30641:CDS | 40.0% | |
| TCGTCCAGAAATTGTGAGTT+CGG | + | 43372:18665-18684 | MS.gene30641:CDS | 40.0% | |
| TGGAATGGGATTTGATTCCA+TGG | + | 43372:16769-16788 | MS.gene30641:CDS | 40.0% | |
| TGGCATCTTCAGATGTTGAT+TGG | + | 43372:16735-16754 | MS.gene30641:CDS | 40.0% | |
| TGGGCTGCATGTTATATGAA+GGG | + | 43372:17898-17917 | MS.gene30641:CDS | 40.0% | |
| TTCGGATGTTATGCAAGCAA+AGG | + | 43372:18683-18702 | MS.gene30641:CDS | 40.0% | |
| TTGATCCTCATGTACTTGTG+GGG | - | 43372:19111-19130 | None:intergenic | 40.0% | |
| ! | AACTTTTGAGCACACAAGCA+GGG | + | 43372:17176-17195 | MS.gene30641:CDS | 40.0% |
| ! | AAGCAATAGCAGCTTTGTCA+AGG | - | 43372:18978-18997 | None:intergenic | 40.0% |
| ! | ATGGCGTTGTGCAAGATTTT+AGG | + | 43372:18442-18461 | MS.gene30641:CDS | 40.0% |
| ! | ATGGGCTGCATGTTATATGA+AGG | + | 43372:17897-17916 | MS.gene30641:CDS | 40.0% |
| ! | GTGTGATGCACAGATGATTT+TGG | + | 43372:17387-17406 | MS.gene30641:CDS | 40.0% |
| ! | TGGCGTTGTGCAAGATTTTA+GGG | + | 43372:18443-18462 | MS.gene30641:CDS | 40.0% |
| ! | TTTAGGTTCCTTGGATAGGT+TGG | + | 43372:16705-16724 | MS.gene30641:intron | 40.0% |
| !! | ATGAAGGGAGTGTTAACACT+TGG | + | 43372:17913-17932 | MS.gene30641:CDS | 40.0% |
| !! | ATTGATTTGGCTCATGACTC+TGG | + | 43372:17130-17149 | MS.gene30641:CDS | 40.0% |
| !! | CGATTGGTTTGTTGTAAGGA+AGG | + | 43372:16893-16912 | MS.gene30641:CDS | 40.0% |
| !! | TATAGTTTCCGTGTTGGCTT+CGG | + | 43372:16818-16837 | MS.gene30641:CDS | 40.0% |
| !! | TGTGCAAGATTTTAGGGGAA+AGG | + | 43372:18449-18468 | MS.gene30641:CDS | 40.0% |
| !!! | TTTTTTCTTTAGGTGGAGCG+CGG | - | 43372:18791-18810 | None:intergenic | 40.0% |
| AAGCAAGTGGTCTATTGGCA+TGG | - | 43372:17465-17484 | None:intergenic | 45.0% | |
| AAGCATCACCCAAGGAAGAA+TGG | + | 43372:18550-18569 | MS.gene30641:CDS | 45.0% | |
| AAGTGGTCTATTGGCATGGT+TGG | - | 43372:17461-17480 | None:intergenic | 45.0% | |
| ACCAAGATCAAGCAATGGCA+AGG | + | 43372:17632-17651 | MS.gene30641:CDS | 45.0% | |
| ACTTGTGGGGACTCATAAGT+CGG | - | 43372:19098-19117 | None:intergenic | 45.0% | |
| AGGTTCAGTCATATTTGGGG+CGG | + | 43372:17513-17532 | MS.gene30641:CDS | 45.0% | |
| AGTATGGCGTATGGTGAGAT+TGG | + | 43372:17265-17284 | MS.gene30641:CDS | 45.0% | |
| CACTGACCAAGATCAAGCAA+TGG | + | 43372:17627-17646 | MS.gene30641:CDS | 45.0% | |
| CAGAGACAACACACATGCTT+CGG | + | 43372:17071-17090 | MS.gene30641:CDS | 45.0% | |
| CCAAGATCAAGCAATGGCAA+GGG | + | 43372:17633-17652 | MS.gene30641:CDS | 45.0% | |
| CGGATGTTATGCAAGCAAAG+GGG | + | 43372:18685-18704 | MS.gene30641:CDS | 45.0% | |
| GGGATTTGATTCCATGGAAG+AGG | + | 43372:16775-16794 | MS.gene30641:CDS | 45.0% | |
| GTTGTAAGGAAGGGCTAAAG+AGG | + | 43372:16903-16922 | MS.gene30641:CDS | 45.0% | |
| TAAGGAAGGGCTAAAGAGGA+AGG | + | 43372:16907-16926 | MS.gene30641:CDS | 45.0% | |
| TATGCAAGCAAAGGGGTTCA+GGG | + | 43372:18692-18711 | MS.gene30641:CDS | 45.0% | |
| TGGACAAGAGAAGCCCATTA+TGG | + | 43372:18423-18442 | MS.gene30641:CDS | 45.0% | |
| TGGCTCATGACTCTGGATTA+AGG | + | 43372:17137-17156 | MS.gene30641:CDS | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | - | 43372:17616-17635 | None:intergenic | 45.0% | |
| TTATGCAAGCAAAGGGGTTC+AGG | + | 43372:18691-18710 | MS.gene30641:CDS | 45.0% | |
| TTTAGGGGAAAGGAGGTTGA+AGG | + | 43372:18459-18478 | MS.gene30641:CDS | 45.0% | |
| ! | CAACTTTTGAGCACACAAGC+AGG | + | 43372:17175-17194 | MS.gene30641:CDS | 45.0% |
| ! | GGCGTTGTGCAAGATTTTAG+GGG | + | 43372:18444-18463 | MS.gene30641:CDS | 45.0% |
| !! | GCAAGATTTTAGGGGAAAGG+AGG | + | 43372:18452-18471 | MS.gene30641:CDS | 45.0% |
| AATAGGGGGGCCAACCTATT+TGG | + | 43372:19242-19261 | MS.gene30641:CDS | 50.0% | |
| CCCTTGCCATTGCTTGATCT+TGG | - | 43372:17636-17655 | None:intergenic | 50.0% | |
| CTCTAACTCCGAAGCCAACA+CGG | - | 43372:16829-16848 | None:intergenic | 50.0% | |
| CTTGGGAACTTGATGAAGGG+AGG | + | 43372:17730-17749 | MS.gene30641:CDS | 50.0% | |
| GCAGGGCATAGAGCTAATGT+TGG | + | 43372:17193-17212 | MS.gene30641:CDS | 50.0% | |
| TGAGTCCCCACAAGTACATG+AGG | + | 43372:19103-19122 | MS.gene30641:CDS | 50.0% | |
| GGAACTTCGCGCACAAGCTA+TGG | + | 43372:18620-18639 | MS.gene30641:CDS | 55.0% | |
| GTGATGCCCGAGACTCATCA+TGG | + | 43372:17667-17686 | MS.gene30641:CDS | 55.0% | |
| TGTGGGGACTCATAAGTCGG+AGG | - | 43372:19095-19114 | None:intergenic | 55.0% | |
| ! | GGCAACTGAAGCATCACCCA+AGG | + | 43372:18542-18561 | MS.gene30641:CDS | 55.0% |
| ! | GGCATGGTTGGTACAGTACG+TGG | - | 43372:17449-17468 | None:intergenic | 55.0% |
| AAGGGGTTCAGGGTACGACC+CGG | + | 43372:18702-18721 | MS.gene30641:CDS | 60.0% | |
| GGGGGGCCAACCTATTTGGA+TGG | + | 43372:19246-19265 | MS.gene30641:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43372 | gene | 16309 | 19281 | 16309 | ID=MS.gene30641 |
| 43372 | mRNA | 16309 | 19281 | 16309 | ID=MS.gene30641.t1;Parent=MS.gene30641 |
| 43372 | exon | 16309 | 16323 | 16309 | ID=MS.gene30641.t1.exon1;Parent=MS.gene30641.t1 |
| 43372 | CDS | 16309 | 16323 | 16309 | ID=cds.MS.gene30641.t1;Parent=MS.gene30641.t1 |
| 43372 | exon | 16710 | 18818 | 16710 | ID=MS.gene30641.t1.exon2;Parent=MS.gene30641.t1 |
| 43372 | CDS | 16710 | 18818 | 16710 | ID=cds.MS.gene30641.t1;Parent=MS.gene30641.t1 |
| 43372 | exon | 19068 | 19154 | 19068 | ID=MS.gene30641.t1.exon3;Parent=MS.gene30641.t1 |
| 43372 | CDS | 19068 | 19154 | 19068 | ID=cds.MS.gene30641.t1;Parent=MS.gene30641.t1 |
| 43372 | exon | 19240 | 19281 | 19240 | ID=MS.gene30641.t1.exon4;Parent=MS.gene30641.t1 |
| 43372 | CDS | 19240 | 19281 | 19240 | ID=cds.MS.gene30641.t1;Parent=MS.gene30641.t1 |
| Gene Sequence |
| Protein sequence |
