AlfalfaGEDB | MS.gene30695

M. sativa cultivar XinJiangDaYe / MS.gene30695

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30695.t1	XP_013452200.1	57.1	147	35	3	1	119	565	711	6.00E-33	150.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30695.t1	Q9FLW0	53.7	147	39	4	1	119	558	703	5.2e-33	141.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30695.t1	A0A072UAW4	57.1	147	35	3	1	119	565	711	4.3e-33	150.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30695.t1	MTR_6g048090	57.823	147	34	4	1	119	565	711	4.21e-45	155
MS.gene30695.t1	MTR_2g080220	47.619	147	48	4	1	119	571	716	1.11e-35	129
MS.gene30695.t1	MTR_2g096160	48.299	147	47	4	1	119	572	717	1.98e-35	128
MS.gene30695.t1	MTR_4g061833	47.619	147	48	4	1	119	418	563	5.94e-35	126
MS.gene30695.t1	MTR_4g061833	47.619	147	48	4	1	119	569	714	1.05e-34	126
MS.gene30695.t1	MTR_4g061930	47.619	147	48	4	1	119	569	714	1.05e-34	126
MS.gene30695.t1	MTR_7g073660	67.949	78	25	0	42	119	679	756	1.02e-31	117
MS.gene30695.t1	MTR_8g037700	43.537	147	53	5	1	119	600	744	3.45e-30	113
MS.gene30695.t1	MTR_2g030310	42.466	146	57	4	1	119	590	735	7.41e-30	112
MS.gene30695.t1	MTR_2g030310	42.466	146	57	4	1	119	590	735	8.02e-30	112

Showing 1 to 10 of 171 entries

Previous1 2 3 4 5…18Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30695.t1	AT5G24010	53.741	147	39	4	1	119	558	703	1.61e-41	145
MS.gene30695.t1	AT5G54380	47.619	147	48	4	1	119	579	724	1.65e-35	128
MS.gene30695.t1	AT3G46290	47.619	147	48	4	1	119	554	699	4.19e-35	127
MS.gene30695.t1	AT5G59700	48.299	147	47	4	1	119	551	696	6.43e-35	127
MS.gene30695.t1	AT5G61350	45.098	153	48	5	1	119	594	744	1.70e-33	122
MS.gene30695.t1	AT2G39360	43.919	148	53	4	1	119	556	702	1.09e-32	120
MS.gene30695.t1	AT3G51550	42.857	147	55	4	1	119	606	751	1.58e-31	117
MS.gene30695.t1	AT2G21480	44.898	147	51	5	1	119	594	738	1.89e-31	117
MS.gene30695.t1	AT4G39110	44.218	147	52	5	1	119	595	739	6.24e-31	115
MS.gene30695.t1	AT1G30570	41.781	146	58	2	1	119	589	734	1.61e-30	114

Showing 1 to 10 of 210 entries

Previous1 2 3 4 5…21Next

Find 22 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGAATGTTTATTCATT+TGG	0.292521	6.3:+43293559	MS.gene30695:CDS
AACCGTTCCCTATCAAGTTG+TGG	0.553803	6.3:-43293625	None:intergenic
AAGGACTTCAAACTCTGTCC+TGG	0.487023	6.3:+43293292	MS.gene30695:CDS
ACGTGAGTTTCATCAATACA+AGG	0.618901	6.3:-43293466	None:intergenic
ACTAATGCGAATGCTAGTTT+TGG	0.371237	6.3:+43293493	MS.gene30695:CDS
ATATTCATCGGTACAGCTCG+AGG	0.605279	6.3:+43293331	MS.gene30695:CDS
ATCATATTATATGGTTCAGA+AGG	0.533250	6.3:+43293273	MS.gene30695:CDS
ATCCACAACTTGATAGGGAA+CGG	0.573261	6.3:+43293623	MS.gene30695:CDS
ATCTCGAGACGCTGCTTTCC+AGG	0.275534	6.3:-43293310	None:intergenic
ATTTCGGTCTCTCAAGATCT+GGG	0.516862	6.3:+43293443	MS.gene30695:CDS

Showing 1 to 10 of 22 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACGTGAGTTTCATCAATACA+AGG	-	chr6.3:43293469-43293488	None:intergenic	35.0%
TGTTGATCCACAACTTGATA+GGG	+	chr6.3:43293618-43293637	MS.gene30695:CDS	35.0%
ATCCACAACTTGATAGGGAA+CGG	+	chr6.3:43293623-43293642	MS.gene30695:CDS	40.0%
ATTTCGGTCTCTCAAGATCT+GGG	+	chr6.3:43293443-43293462	MS.gene30695:CDS	40.0%
CATCAAGCGATTTAATGTCG+CGG	-	chr6.3:43293399-43293418	None:intergenic	40.0%
CTGTTGATCCACAACTTGAT+AGG	+	chr6.3:43293617-43293636	MS.gene30695:CDS	40.0%
GGTCTATACTATCTTCACAC+TGG	+	chr6.3:43293352-43293371	MS.gene30695:intron	40.0%
AAGGACTTCAAACTCTGTCC+TGG	+	chr6.3:43293292-43293311	MS.gene30695:CDS	45.0%
ATATTCATCGGTACAGCTCG+AGG	+	chr6.3:43293331-43293350	MS.gene30695:CDS	45.0%
CAGCGTCTCGAGATATTCAT+CGG	+	chr6.3:43293319-43293338	MS.gene30695:CDS	45.0%

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	43293230	43293663	43293230	ID=MS.gene30695
chr6.3	mRNA	43293230	43293663	43293230	ID=MS.gene30695.t1;Parent=MS.gene30695
chr6.3	exon	43293230	43293352	43293230	ID=MS.gene30695.t1.exon1;Parent=MS.gene30695.t1
chr6.3	CDS	43293230	43293352	43293230	ID=cds.MS.gene30695.t1;Parent=MS.gene30695.t1
chr6.3	exon	43293427	43293663	43293427	ID=MS.gene30695.t1.exon2;Parent=MS.gene30695.t1
chr6.3	CDS	43293427	43293663	43293427	ID=cds.MS.gene30695.t1;Parent=MS.gene30695.t1

Gene Sequence

>MS.gene30695

ATGATACTTGTCTATGAGTATTTCGAAAAAGATCCACTCAAAGATCATATTATATGGTTCAGAAGGACTTCAAACTCTGTCCTGGAAAGCAGCGTCTCGAGATATTCATCGGTACAGCTCGAGGTCTATACTATCTTCACACTGGTTTCACACAAGGAATCATCCACCGCGACATTAAATCGCTTGATGAAAATTAGGTTGCTATGGTTGCTGATTTCGGTCTCTCAAGATCTGGGCCTTGTATTGATGAAACTCACGTGAGTACTAATGCGAATGCTAGTTTTGGTTACCTTGATGCGGAGTACTTTCGAAGGCAACAACTTACGAATAAATTGAATGTTTATTCATTTGGAGCTGTGCTCTTCGAGGTTCTTTGTGTTAGACCTGCTGTTGATCCACAACTTGATAGGGAACGGTTGAATTTAGCAGAATGA

Protein sequence

>MS.gene30695.t1

MILVYEYFEKDPLKDHIIWFRRTSNSVLESSVSRYSSVQLEVAMVADFGLSRSGPCIDETHVSTNANASFGYLDAEYFRRQQLTNKLNVYSFGAVLFEVLCVRPAVDPQLDRERLNLAE