Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30736.t1 | RHN68580.1 | 93.1 | 203 | 10 | 1 | 1 | 203 | 1 | 199 | 8.30E-99 | 369.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30736.t1 | Q9FKZ3 | 76.5 | 115 | 27 | 0 | 6 | 120 | 4 | 118 | 4.1e-46 | 186.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30736.t1 | A0A072UZB6 | 93.1 | 203 | 10 | 1 | 1 | 203 | 1 | 199 | 6.0e-99 | 369.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene30736.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30736.t1 | MTR_3g073690 | 94.089 | 203 | 8 | 1 | 1 | 203 | 1 | 199 | 3.09e-127 | 357 |
| MS.gene30736.t1 | MTR_5g017950 | 76.423 | 123 | 29 | 0 | 2 | 124 | 1 | 123 | 1.17e-66 | 207 |
| MS.gene30736.t1 | MTR_3g452660 | 74.576 | 118 | 28 | 2 | 2 | 118 | 1 | 117 | 6.33e-57 | 182 |
| MS.gene30736.t1 | MTR_4g105170 | 66.957 | 115 | 38 | 0 | 8 | 122 | 10 | 124 | 2.00e-50 | 162 |
| MS.gene30736.t1 | MTR_7g033800 | 66.667 | 111 | 37 | 0 | 3 | 113 | 5 | 115 | 1.48e-49 | 159 |
| MS.gene30736.t1 | MTR_6g005070 | 66.972 | 109 | 36 | 0 | 1 | 109 | 1 | 109 | 1.00e-48 | 156 |
| MS.gene30736.t1 | MTR_3g077240 | 55.944 | 143 | 60 | 1 | 3 | 145 | 4 | 143 | 1.20e-48 | 157 |
| MS.gene30736.t1 | MTR_6g005080 | 62.832 | 113 | 42 | 0 | 1 | 113 | 2 | 114 | 6.27e-48 | 154 |
| MS.gene30736.t1 | MTR_5g083230 | 60.684 | 117 | 45 | 1 | 7 | 122 | 4 | 120 | 1.09e-46 | 151 |
| MS.gene30736.t1 | MTR_3g071590 | 61.111 | 108 | 42 | 0 | 2 | 109 | 1 | 108 | 1.27e-45 | 148 |
| MS.gene30736.t1 | MTR_3g031660 | 60.577 | 104 | 41 | 0 | 6 | 109 | 4 | 107 | 9.28e-45 | 147 |
| MS.gene30736.t1 | MTR_8g040900 | 58.394 | 137 | 54 | 2 | 2 | 138 | 1 | 134 | 1.36e-44 | 148 |
| MS.gene30736.t1 | MTR_5g083960 | 60.377 | 106 | 42 | 0 | 7 | 112 | 37 | 142 | 4.39e-43 | 143 |
| MS.gene30736.t1 | MTR_4g083680 | 60.784 | 102 | 40 | 0 | 7 | 108 | 13 | 114 | 9.96e-43 | 142 |
| MS.gene30736.t1 | MTR_2g093310 | 59.804 | 102 | 41 | 0 | 8 | 109 | 32 | 133 | 1.74e-42 | 142 |
| MS.gene30736.t1 | MTR_2g068760 | 60.784 | 102 | 40 | 0 | 8 | 109 | 12 | 113 | 5.01e-42 | 139 |
| MS.gene30736.t1 | MTR_3g094690 | 60.000 | 105 | 42 | 0 | 8 | 112 | 46 | 150 | 1.31e-41 | 140 |
| MS.gene30736.t1 | MTR_3g071420 | 62.745 | 102 | 38 | 0 | 6 | 107 | 11 | 112 | 5.14e-41 | 137 |
| MS.gene30736.t1 | MTR_8g079660 | 56.364 | 110 | 48 | 0 | 9 | 118 | 8 | 117 | 1.03e-40 | 139 |
| MS.gene30736.t1 | MTR_5g083010 | 60.952 | 105 | 41 | 0 | 6 | 110 | 8 | 112 | 3.41e-40 | 135 |
| MS.gene30736.t1 | MTR_3g094690 | 59.048 | 105 | 42 | 1 | 8 | 112 | 46 | 149 | 2.11e-39 | 135 |
| MS.gene30736.t1 | MTR_1g095850 | 56.863 | 102 | 44 | 0 | 10 | 111 | 73 | 174 | 4.01e-39 | 134 |
| MS.gene30736.t1 | MTR_8g079620 | 53.636 | 110 | 51 | 0 | 9 | 118 | 8 | 117 | 5.14e-39 | 134 |
| MS.gene30736.t1 | MTR_4g060950 | 56.311 | 103 | 44 | 1 | 8 | 109 | 23 | 125 | 6.16e-39 | 132 |
| MS.gene30736.t1 | MTR_5g075020 | 55.738 | 122 | 46 | 1 | 8 | 121 | 42 | 163 | 2.36e-38 | 132 |
| MS.gene30736.t1 | MTR_5g075020 | 55.738 | 122 | 46 | 1 | 8 | 121 | 46 | 167 | 3.73e-38 | 132 |
| MS.gene30736.t1 | MTR_8g079580 | 53.153 | 111 | 51 | 1 | 9 | 118 | 8 | 118 | 9.04e-36 | 125 |
| MS.gene30736.t1 | MTR_7g096530 | 53.571 | 112 | 51 | 1 | 3 | 113 | 8 | 119 | 1.22e-34 | 122 |
| MS.gene30736.t1 | MTR_7g028905 | 48.544 | 103 | 53 | 0 | 8 | 110 | 4 | 106 | 1.89e-34 | 119 |
| MS.gene30736.t1 | MTR_8g036085 | 54.717 | 106 | 47 | 1 | 8 | 112 | 22 | 127 | 7.16e-34 | 120 |
| MS.gene30736.t1 | MTR_7g074990 | 53.846 | 104 | 47 | 1 | 9 | 111 | 20 | 123 | 2.01e-33 | 119 |
| MS.gene30736.t1 | MTR_8g036105 | 41.436 | 181 | 99 | 2 | 6 | 185 | 15 | 189 | 1.06e-32 | 117 |
| MS.gene30736.t1 | MTR_5g093010 | 46.602 | 103 | 55 | 0 | 10 | 112 | 6 | 108 | 1.59e-32 | 114 |
| MS.gene30736.t1 | MTR_1g070205 | 41.139 | 158 | 75 | 3 | 9 | 152 | 12 | 165 | 1.75e-32 | 117 |
| MS.gene30736.t1 | MTR_1g070220 | 54.455 | 101 | 45 | 1 | 9 | 108 | 15 | 115 | 1.83e-32 | 116 |
| MS.gene30736.t1 | MTR_6g027710 | 36.000 | 200 | 109 | 4 | 8 | 199 | 39 | 227 | 1.92e-31 | 114 |
| MS.gene30736.t1 | MTR_7g096610 | 49.091 | 110 | 55 | 1 | 2 | 110 | 1 | 110 | 6.80e-31 | 113 |
| MS.gene30736.t1 | MTR_6g011200 | 36.757 | 185 | 97 | 6 | 10 | 189 | 10 | 179 | 5.91e-30 | 111 |
| MS.gene30736.t1 | MTR_5g080470 | 46.667 | 105 | 55 | 1 | 7 | 110 | 5 | 109 | 6.25e-30 | 109 |
| MS.gene30736.t1 | MTR_7g075230 | 41.667 | 168 | 82 | 5 | 6 | 166 | 9 | 167 | 4.39e-29 | 107 |
| MS.gene30736.t1 | MTR_6g011230 | 46.000 | 100 | 54 | 0 | 7 | 106 | 9 | 108 | 4.22e-28 | 105 |
| MS.gene30736.t1 | MTR_6g027700 | 46.602 | 103 | 54 | 1 | 7 | 108 | 5 | 107 | 1.88e-27 | 103 |
| MS.gene30736.t1 | MTR_6g011250 | 46.078 | 102 | 54 | 1 | 10 | 110 | 10 | 111 | 9.18e-27 | 101 |
| MS.gene30736.t1 | MTR_4g107450 | 45.000 | 100 | 55 | 0 | 10 | 109 | 11 | 110 | 4.32e-26 | 102 |
| MS.gene30736.t1 | MTR_4g099230 | 40.476 | 126 | 70 | 3 | 10 | 134 | 3 | 124 | 3.45e-25 | 96.3 |
| MS.gene30736.t1 | MTR_8g017090 | 38.835 | 103 | 63 | 0 | 10 | 112 | 13 | 115 | 6.32e-24 | 96.7 |
| MS.gene30736.t1 | MTR_5g085390 | 42.157 | 102 | 58 | 1 | 10 | 110 | 10 | 111 | 7.33e-22 | 89.7 |
| MS.gene30736.t1 | MTR_2g100020 | 36.634 | 101 | 64 | 0 | 10 | 110 | 20 | 120 | 3.08e-21 | 89.0 |
| MS.gene30736.t1 | MTR_4g088035 | 37.778 | 90 | 56 | 0 | 6 | 95 | 3 | 92 | 9.18e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30736.t1 | AT5G66870 | 77.193 | 114 | 26 | 0 | 7 | 120 | 5 | 118 | 4.01e-61 | 193 |
| MS.gene30736.t1 | AT2G23660 | 66.379 | 116 | 39 | 0 | 7 | 122 | 3 | 118 | 4.50e-56 | 180 |
| MS.gene30736.t1 | AT2G23660 | 66.379 | 116 | 39 | 0 | 7 | 122 | 3 | 118 | 4.50e-56 | 180 |
| MS.gene30736.t1 | AT2G23660 | 66.379 | 116 | 39 | 0 | 7 | 122 | 3 | 118 | 4.50e-56 | 180 |
| MS.gene30736.t1 | AT5G63090 | 69.298 | 114 | 33 | 1 | 1 | 112 | 1 | 114 | 4.35e-51 | 163 |
| MS.gene30736.t1 | AT5G63090 | 69.298 | 114 | 33 | 1 | 1 | 112 | 1 | 114 | 4.35e-51 | 163 |
| MS.gene30736.t1 | AT5G63090 | 69.298 | 114 | 33 | 1 | 1 | 112 | 1 | 114 | 4.35e-51 | 163 |
| MS.gene30736.t1 | AT5G63090 | 69.298 | 114 | 33 | 1 | 1 | 112 | 1 | 114 | 4.35e-51 | 163 |
| MS.gene30736.t1 | AT3G27650 | 64.602 | 113 | 40 | 0 | 2 | 114 | 32 | 144 | 5.45e-49 | 157 |
| MS.gene30736.t1 | AT1G65620 | 66.942 | 121 | 40 | 0 | 1 | 121 | 1 | 121 | 6.54e-48 | 155 |
| MS.gene30736.t1 | AT1G65620 | 66.942 | 121 | 40 | 0 | 1 | 121 | 1 | 121 | 6.54e-48 | 155 |
| MS.gene30736.t1 | AT1G65620 | 66.942 | 121 | 40 | 0 | 1 | 121 | 1 | 121 | 6.54e-48 | 155 |
| MS.gene30736.t1 | AT1G65620 | 66.942 | 121 | 40 | 0 | 1 | 121 | 1 | 121 | 6.54e-48 | 155 |
| MS.gene30736.t1 | AT1G65620 | 66.942 | 121 | 40 | 0 | 1 | 121 | 1 | 121 | 6.54e-48 | 155 |
| MS.gene30736.t1 | AT2G30130 | 62.963 | 108 | 40 | 0 | 2 | 109 | 1 | 108 | 1.21e-47 | 155 |
| MS.gene30736.t1 | AT1G07900 | 60.194 | 103 | 41 | 0 | 8 | 110 | 32 | 134 | 1.87e-43 | 144 |
| MS.gene30736.t1 | AT2G28500 | 46.452 | 155 | 78 | 2 | 8 | 162 | 54 | 203 | 1.61e-42 | 143 |
| MS.gene30736.t1 | AT2G30340 | 59.804 | 102 | 41 | 0 | 8 | 109 | 51 | 152 | 5.87e-41 | 140 |
| MS.gene30736.t1 | AT2G30340 | 59.804 | 102 | 41 | 0 | 8 | 109 | 52 | 153 | 6.84e-41 | 140 |
| MS.gene30736.t1 | AT3G11090 | 57.798 | 109 | 46 | 0 | 6 | 114 | 8 | 116 | 2.28e-40 | 135 |
| MS.gene30736.t1 | AT1G16530 | 59.223 | 103 | 41 | 1 | 8 | 109 | 13 | 115 | 2.83e-40 | 135 |
| MS.gene30736.t1 | AT1G31320 | 62.921 | 89 | 33 | 0 | 7 | 95 | 11 | 99 | 8.49e-39 | 131 |
| MS.gene30736.t1 | AT2G40470 | 60.000 | 105 | 42 | 0 | 8 | 112 | 19 | 123 | 9.85e-38 | 130 |
| MS.gene30736.t1 | AT2G40470 | 60.000 | 105 | 42 | 0 | 8 | 112 | 44 | 148 | 1.89e-37 | 130 |
| MS.gene30736.t1 | AT3G26660 | 50.476 | 105 | 52 | 0 | 6 | 110 | 2 | 106 | 3.70e-37 | 125 |
| MS.gene30736.t1 | AT3G26620 | 50.476 | 105 | 52 | 0 | 6 | 110 | 2 | 106 | 3.70e-37 | 125 |
| MS.gene30736.t1 | AT4G00210 | 55.556 | 117 | 47 | 2 | 7 | 122 | 9 | 121 | 4.26e-37 | 129 |
| MS.gene30736.t1 | AT3G50510 | 50.420 | 119 | 58 | 1 | 7 | 124 | 10 | 128 | 5.33e-37 | 128 |
| MS.gene30736.t1 | AT3G50510 | 50.420 | 119 | 58 | 1 | 7 | 124 | 10 | 128 | 5.33e-37 | 128 |
| MS.gene30736.t1 | AT5G35900 | 50.459 | 109 | 54 | 0 | 6 | 114 | 2 | 110 | 2.87e-36 | 126 |
| MS.gene30736.t1 | AT3G03760 | 54.369 | 103 | 46 | 1 | 8 | 109 | 50 | 152 | 2.35e-34 | 123 |
| MS.gene30736.t1 | AT3G58190 | 44.286 | 140 | 73 | 3 | 9 | 146 | 11 | 147 | 4.07e-34 | 121 |
| MS.gene30736.t1 | AT2G42430 | 52.336 | 107 | 50 | 1 | 7 | 112 | 13 | 119 | 5.20e-32 | 116 |
| MS.gene30736.t1 | AT4G00220 | 55.446 | 101 | 44 | 1 | 12 | 111 | 20 | 120 | 7.55e-32 | 115 |
| MS.gene30736.t1 | AT2G45420 | 54.455 | 101 | 45 | 1 | 12 | 111 | 40 | 140 | 1.10e-30 | 113 |
| MS.gene30736.t1 | AT2G42440 | 47.573 | 103 | 53 | 1 | 7 | 108 | 5 | 107 | 8.37e-30 | 110 |
| MS.gene30736.t1 | AT2G45410 | 44.361 | 133 | 68 | 2 | 12 | 138 | 19 | 151 | 4.44e-29 | 107 |
| MS.gene30736.t1 | AT2G31310 | 47.748 | 111 | 56 | 2 | 7 | 116 | 5 | 114 | 1.08e-28 | 106 |
| MS.gene30736.t1 | AT5G06080 | 44.444 | 108 | 59 | 1 | 6 | 112 | 4 | 111 | 2.95e-27 | 102 |
| MS.gene30736.t1 | AT1G72980 | 43.925 | 107 | 60 | 0 | 3 | 109 | 7 | 113 | 5.59e-27 | 102 |
| MS.gene30736.t1 | AT3G13850 | 39.806 | 103 | 62 | 0 | 10 | 112 | 37 | 139 | 1.83e-26 | 102 |
| MS.gene30736.t1 | AT3G47870 | 38.739 | 111 | 68 | 0 | 2 | 112 | 29 | 139 | 5.34e-26 | 102 |
| MS.gene30736.t1 | AT4G22700 | 37.500 | 144 | 79 | 5 | 7 | 140 | 3 | 145 | 3.47e-23 | 92.0 |
| MS.gene30736.t1 | AT1G06280 | 45.977 | 87 | 47 | 0 | 10 | 96 | 25 | 111 | 1.34e-20 | 85.9 |
| MS.gene30736.t1 | AT2G19820 | 34.021 | 97 | 63 | 1 | 8 | 103 | 11 | 107 | 4.06e-16 | 72.0 |
| MS.gene30736.t1 | AT3G27940 | 31.538 | 130 | 87 | 1 | 6 | 133 | 2 | 131 | 9.63e-15 | 68.9 |
| MS.gene30736.t1 | AT3G27940 | 31.538 | 130 | 87 | 1 | 6 | 133 | 2 | 131 | 9.63e-15 | 68.9 |
| MS.gene30736.t1 | AT3G27940 | 31.538 | 130 | 87 | 1 | 6 | 133 | 2 | 131 | 9.63e-15 | 68.9 |
| MS.gene30736.t1 | AT5G15060 | 41.096 | 73 | 41 | 1 | 10 | 80 | 18 | 90 | 1.26e-12 | 63.2 |
Find 24 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTGAGAGATCCTGTTTA+TGG | 0.254736 | 3.1:-60307411 | MS.gene30736:CDS |
| ACCATTAACTGATTCTGAAA+AGG | 0.386367 | 3.1:+60307153 | None:intergenic |
| AAAGAACTTGCTTCTTATGT+TGG | 0.411259 | 3.1:-60307318 | MS.gene30736:CDS |
| ACCTACGTTCACAAAGTGTT+TGG | 0.430629 | 3.1:-60307522 | MS.gene30736:CDS |
| CCATTAACTGATTCTGAAAA+GGG | 0.443959 | 3.1:+60307154 | None:intergenic |
| TTTGTCAAAGAAGGTGTTCA+AGG | 0.447907 | 3.1:-60307076 | MS.gene30736:CDS |
| AGACCAACACAACCATAAAC+AGG | 0.459225 | 3.1:+60307399 | None:intergenic |
| GAAGGTGTTCAAGGCTGAAA+GGG | 0.499007 | 3.1:-60307067 | MS.gene30736:CDS |
| GATCCTGTTTATGGTTGTGT+TGG | 0.503197 | 3.1:-60307402 | MS.gene30736:CDS |
| AGAAGGTGTTCAAGGCTGAA+AGG | 0.537227 | 3.1:-60307068 | MS.gene30736:CDS |
| GAACTCGAGGCCGCCGTCAT+CGG | 0.548413 | 3.1:+60307273 | None:intergenic |
| TGAATCTTGCACGCTGCACA+CGG | 0.560567 | 3.1:+60307612 | None:intergenic |
| GAGGCCGCCGTCATCGGTGT+AGG | 0.573201 | 3.1:+60307279 | None:intergenic |
| TGAAAGGGACAACCTTGGAG+AGG | 0.580000 | 3.1:-60307052 | MS.gene30736:CDS |
| AAGGCTGAAAGGGACAACCT+TGG | 0.597691 | 3.1:-60307057 | MS.gene30736:CDS |
| GAAAGGGACAACCTTGGAGA+GGG | 0.607182 | 3.1:-60307051 | MS.gene30736:intron |
| CATGCTTCCTACACCGATGA+CGG | 0.624741 | 3.1:-60307286 | MS.gene30736:CDS |
| TCAGCGTCGAAAATGCACTA+AGG | 0.629925 | 3.1:-60307592 | MS.gene30736:CDS |
| GATCATACATACCCTCTCCA+AGG | 0.634542 | 3.1:+60307040 | None:intergenic |
| GGTGTAGGAAGCATGATCTG+AGG | 0.695632 | 3.1:+60307294 | None:intergenic |
| GCTTCCTACACCGATGACGG+CGG | 0.718663 | 3.1:-60307283 | MS.gene30736:CDS |
| CGTGGCAAAGTTACTCAACG+AGG | 0.719799 | 3.1:-60307490 | MS.gene30736:CDS |
| AGTGTTTGGTGCTAGCAACG+TGG | 0.743523 | 3.1:-60307508 | MS.gene30736:CDS |
| ACCAAACACTTTGTGAACGT+AGG | 0.770701 | 3.1:+60307521 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTGTTAATTATTCTATT+AGG | - | chr3.1:60307629-60307648 | MS.gene30736:CDS | 15.0% |
| !! | ACAAAAGTAACAAACAAAAA+AGG | + | chr3.1:60307616-60307635 | None:intergenic | 20.0% |
| CAAACAAAAAAGGACAAAAG+TGG | + | chr3.1:60307606-60307625 | None:intergenic | 30.0% | |
| ! | AAAGAACTTGCTTCTTATGT+TGG | - | chr3.1:60307276-60307295 | MS.gene30736:CDS | 30.0% |
| ! | ACCATTAACTGATTCTGAAA+AGG | + | chr3.1:60307444-60307463 | None:intergenic | 30.0% |
| ! | CCATTAACTGATTCTGAAAA+GGG | + | chr3.1:60307443-60307462 | None:intergenic | 30.0% |
| ! | TTTGACAAAAATGCATCGAT+GGG | + | chr3.1:60307507-60307526 | None:intergenic | 30.0% |
| !! | GTAAACTTTTGAGGATTTTC+CGG | + | chr3.1:60307054-60307073 | None:intergenic | 30.0% |
| ATCATCATCATCATCATCAC+AGG | - | chr3.1:60307467-60307486 | MS.gene30736:CDS | 35.0% | |
| CACAGAAAAATAAGAACTCG+AGG | + | chr3.1:60307337-60307356 | None:intergenic | 35.0% | |
| CTTTGACAAAAATGCATCGA+TGG | + | chr3.1:60307508-60307527 | None:intergenic | 35.0% | |
| ! | CCCTTTTCAGAATCAGTTAA+TGG | - | chr3.1:60307440-60307459 | MS.gene30736:CDS | 35.0% |
| ! | CGATGCATTTTTGTCAAAGA+AGG | - | chr3.1:60307509-60307528 | MS.gene30736:CDS | 35.0% |
| ! | TGAACGTAGGTAAACTTTTG+AGG | + | chr3.1:60307063-60307082 | None:intergenic | 35.0% |
| !! | AAACGAGTTTTCAGCATTGA+AGG | + | chr3.1:60307400-60307419 | None:intergenic | 35.0% |
| !! | TTTGTCAAAGAAGGTGTTCA+AGG | - | chr3.1:60307518-60307537 | MS.gene30736:CDS | 35.0% |
| ACCAAACACTTTGTGAACGT+AGG | + | chr3.1:60307076-60307095 | None:intergenic | 40.0% | |
| AGACCAACACAACCATAAAC+AGG | + | chr3.1:60307198-60307217 | None:intergenic | 40.0% | |
| CGTTTGAGAGATCCTGTTTA+TGG | - | chr3.1:60307183-60307202 | MS.gene30736:CDS | 40.0% | |
| GATCCTGTTTATGGTTGTGT+TGG | - | chr3.1:60307192-60307211 | MS.gene30736:CDS | 40.0% | |
| ! | ACCTACGTTCACAAAGTGTT+TGG | - | chr3.1:60307072-60307091 | MS.gene30736:CDS | 40.0% |
| !! | AACTTTTGAGGATTTTCCGG+CGG | + | chr3.1:60307051-60307070 | None:intergenic | 40.0% |
| GATCATACATACCCTCTCCA+AGG | + | chr3.1:60307557-60307576 | None:intergenic | 45.0% | |
| ! | AGGATTTTCCGGCGGAAAAT+AGG | + | chr3.1:60307043-60307062 | None:intergenic | 45.0% |
| ! | GGATTTTCCGGCGGAAAATA+GGG | + | chr3.1:60307042-60307061 | None:intergenic | 45.0% |
| ! | TCAGCGTCGAAAATGCACTA+AGG | - | chr3.1:60307002-60307021 | MS.gene30736:intron | 45.0% |
| ! | TTTTGCACCCTATTTTCCGC+CGG | - | chr3.1:60307032-60307051 | MS.gene30736:intron | 45.0% |
| !! | AGAAGGTGTTCAAGGCTGAA+AGG | - | chr3.1:60307526-60307545 | MS.gene30736:CDS | 45.0% |
| !! | GAAGGTGTTCAAGGCTGAAA+GGG | - | chr3.1:60307527-60307546 | MS.gene30736:CDS | 45.0% |
| AAGGCTGAAAGGGACAACCT+TGG | - | chr3.1:60307537-60307556 | MS.gene30736:CDS | 50.0% | |
| CATGCTTCCTACACCGATGA+CGG | - | chr3.1:60307308-60307327 | MS.gene30736:CDS | 50.0% | |
| CGTGGCAAAGTTACTCAACG+AGG | - | chr3.1:60307104-60307123 | MS.gene30736:CDS | 50.0% | |
| GAAAGGGACAACCTTGGAGA+GGG | - | chr3.1:60307543-60307562 | MS.gene30736:CDS | 50.0% | |
| TGAAAGGGACAACCTTGGAG+AGG | - | chr3.1:60307542-60307561 | MS.gene30736:CDS | 50.0% | |
| TGAATCTTGCACGCTGCACA+CGG | + | chr3.1:60306985-60307004 | None:intergenic | 50.0% | |
| ! | GGTGTAGGAAGCATGATCTG+AGG | + | chr3.1:60307303-60307322 | None:intergenic | 50.0% |
| !! | AGTGTTTGGTGCTAGCAACG+TGG | - | chr3.1:60307086-60307105 | MS.gene30736:CDS | 50.0% |
| ! | GCTTCCTACACCGATGACGG+CGG | - | chr3.1:60307311-60307330 | MS.gene30736:CDS | 60.0% |
| GAACTCGAGGCCGCCGTCAT+CGG | + | chr3.1:60307324-60307343 | None:intergenic | 65.0% | |
| GAGGCCGCCGTCATCGGTGT+AGG | + | chr3.1:60307318-60307337 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 60306958 | 60307658 | 60306958 | ID=MS.gene30736 |
| chr3.1 | mRNA | 60306958 | 60307658 | 60306958 | ID=MS.gene30736.t1;Parent=MS.gene30736 |
| chr3.1 | exon | 60307052 | 60307658 | 60307052 | ID=MS.gene30736.t1.exon1;Parent=MS.gene30736.t1 |
| chr3.1 | CDS | 60307052 | 60307658 | 60307052 | ID=cds.MS.gene30736.t1;Parent=MS.gene30736.t1 |
| chr3.1 | exon | 60306958 | 60306965 | 60306958 | ID=MS.gene30736.t1.exon2;Parent=MS.gene30736.t1 |
| chr3.1 | CDS | 60306958 | 60306965 | 60306958 | ID=cds.MS.gene30736.t1;Parent=MS.gene30736.t1 |
| Gene Sequence |
| Protein sequence |
