AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30742

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30742.t1 MTR_3g073560 95.402 348 5 1 1 337 1 348 0.0 678
MS.gene30742.t1 MTR_5g060950 65.230 348 106 4 1 333 1 348 2.13e-155 440
MS.gene30742.t1 MTR_3g087940 49.713 348 159 3 1 334 14 359 1.47e-116 342
MS.gene30742.t1 MTR_8g091650 46.821 346 166 5 1 334 15 354 6.14e-99 296
MS.gene30742.t1 MTR_7g089800 47.416 329 161 3 13 334 98 421 2.93e-97 295
MS.gene30742.t1 MTR_7g089800 47.416 329 161 3 13 334 127 450 9.61e-97 294
MS.gene30742.t1 MTR_8g040120 50.331 302 139 2 42 336 169 466 3.58e-96 293
MS.gene30742.t1 MTR_8g091650 51.079 278 135 1 57 334 5 281 3.16e-93 280
MS.gene30742.t1 MTR_8g091650 42.175 377 174 4 1 334 15 390 1.99e-92 281
MS.gene30742.t1 MTR_2g086420 50.174 287 136 3 54 340 194 473 1.62e-88 275
MS.gene30742.t1 MTR_2g086420 50.174 287 136 3 54 340 193 472 1.65e-88 275
MS.gene30742.t1 MTR_7g092750 45.875 303 156 3 40 334 58 360 1.78e-84 260
MS.gene30742.t1 MTR_7g092750 45.875 303 156 3 40 334 159 461 1.92e-83 260
MS.gene30742.t1 MTR_4g053250 46.758 293 146 2 48 340 183 465 2.43e-82 258
MS.gene30742.t1 MTR_5g054900 44.138 290 151 2 52 334 66 351 7.24e-81 250
MS.gene30742.t1 MTR_5g054900 44.138 290 151 2 52 334 147 432 6.09e-80 251
MS.gene30742.t1 MTR_1g111310 43.894 303 160 4 39 334 406 705 1.09e-77 252
MS.gene30742.t1 MTR_1g111310 42.373 295 160 2 39 330 39 326 3.18e-69 229
MS.gene30742.t1 MTR_5g054900 43.448 290 149 3 52 334 66 347 3.11e-77 241
MS.gene30742.t1 MTR_5g054900 43.448 290 149 3 52 334 177 458 1.04e-75 240
MS.gene30742.t1 MTR_7g092750 41.914 303 142 4 40 334 159 435 6.59e-69 222
MS.gene30742.t1 MTR_0126s0080 47.390 249 123 2 49 289 211 459 7.09e-66 215
MS.gene30742.t1 MTR_3g044820 42.308 182 96 3 39 212 30 210 5.30e-43 148
MS.gene30742.t1 MTR_1g090370 35.329 167 89 5 156 321 72 220 1.73e-17 80.9
MS.gene30742.t1 MTR_1g111320 55.556 63 28 0 39 101 131 193 1.79e-14 72.0
MS.gene30742.t1 MTR_2g076140 29.082 196 103 5 143 318 23 202 3.95e-14 71.2
MS.gene30742.t1 MTR_7g068860 29.050 179 111 4 160 326 45 219 1.00e-12 67.4
MS.gene30742.t1 MTR_8g094690 26.383 235 136 5 125 323 14 247 9.36e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30742.t1 AT1G22070 49.448 362 155 2 1 334 19 380 1.29e-124 363
MS.gene30742.t1 AT1G77920 50.139 361 141 6 1 334 16 364 3.81e-118 346
MS.gene30742.t1 AT5G10030 49.275 345 162 3 1 332 14 358 9.49e-113 332
MS.gene30742.t1 AT5G10030 49.275 345 162 3 1 332 14 358 9.49e-113 332
MS.gene30742.t1 AT5G10030 49.275 345 162 3 1 332 14 358 9.49e-113 332
MS.gene30742.t1 AT5G10030 49.275 345 162 3 1 332 14 358 9.49e-113 332
MS.gene30742.t1 AT5G10030 49.275 345 162 3 1 332 14 358 9.49e-113 332
MS.gene30742.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.77e-111 329
MS.gene30742.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.77e-111 329
MS.gene30742.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.77e-111 329
MS.gene30742.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.77e-111 329
MS.gene30742.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.77e-111 329
MS.gene30742.t1 AT5G65210 47.851 349 161 2 3 332 16 362 1.77e-111 329
MS.gene30742.t1 AT5G65210 53.472 288 134 0 45 332 5 292 5.09e-107 315
MS.gene30742.t1 AT3G12250 48.161 299 145 2 42 334 7 301 1.38e-91 276
MS.gene30742.t1 AT3G12250 48.161 299 145 2 42 334 34 328 2.78e-91 276
MS.gene30742.t1 AT3G12250 48.161 299 145 2 42 334 34 328 2.78e-91 276
MS.gene30742.t1 AT3G12250 48.161 299 145 2 42 334 34 328 2.78e-91 276
MS.gene30742.t1 AT3G12250 48.161 299 145 2 42 334 34 328 2.78e-91 276
MS.gene30742.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.27e-91 276
MS.gene30742.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.27e-91 276
MS.gene30742.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.27e-91 276
MS.gene30742.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.27e-91 276
MS.gene30742.t1 AT5G06950 47.826 299 146 2 42 334 34 328 3.27e-91 276
MS.gene30742.t1 AT3G12250 48.161 299 145 2 42 334 28 322 4.27e-91 275
MS.gene30742.t1 AT3G12250 48.161 299 145 2 42 334 59 353 1.07e-90 276
MS.gene30742.t1 AT5G06960 49.481 289 136 2 52 334 24 308 2.79e-90 273
MS.gene30742.t1 AT5G06960 49.481 289 136 2 52 334 44 328 4.53e-90 273
MS.gene30742.t1 AT5G06960 49.481 289 136 2 52 334 44 328 4.53e-90 273
MS.gene30742.t1 AT1G08320 45.779 308 152 3 37 340 37 333 1.08e-88 270
MS.gene30742.t1 AT1G08320 45.779 308 152 3 37 340 37 333 1.08e-88 270
MS.gene30742.t1 AT1G08320 45.779 308 152 3 37 340 161 457 1.71e-86 269
MS.gene30742.t1 AT1G08320 45.779 308 152 3 37 340 161 457 1.71e-86 269
MS.gene30742.t1 AT1G08320 45.779 308 152 3 37 340 161 457 1.71e-86 269
MS.gene30742.t1 AT5G06839 42.817 355 164 7 1 334 120 456 5.33e-82 257
MS.gene30742.t1 AT5G06839 45.902 305 142 4 49 334 113 413 7.53e-82 255
MS.gene30742.t1 AT5G06839 45.752 306 142 4 49 334 113 414 1.26e-81 254
MS.gene30742.t1 AT1G68640 43.581 296 155 3 49 336 161 452 3.30e-75 239
MS.gene30742.t1 AT1G58330 26.816 179 118 4 160 326 46 223 2.02e-11 63.5
MS.gene30742.t1 AT3G14880 23.077 234 141 5 122 330 6 225 2.48e-11 63.5

Find 80 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATTTGCTGCATTTAA+TGG 0.080172 3.1:+60231597 None:intergenic
TTGAAATTGAATACGGAAAT+TGG 0.106575 3.1:-60232101 MS.gene30742:CDS
TTCGTACTATTTGTTCTCTA+TGG 0.263825 3.1:-60231204 MS.gene30742:CDS
CTAGGGGCTTGATTGCTCTT+GGG 0.318816 3.1:-60231243 MS.gene30742:CDS
GCTAGGGGCTTGATTGCTCT+TGG 0.321096 3.1:-60231244 MS.gene30742:CDS
TCCCATAAAACTGGTATCTA+AGG 0.348603 3.1:+60232235 None:intergenic
CACCCCACATGCTAACTTGC+TGG 0.350263 3.1:+60233153 None:intergenic
CACCTAGGATTACTCCTTAG+AGG 0.368350 3.1:-60231153 None:intergenic
GAAAAGCCGGGAGCGCAAAA+AGG 0.370740 3.1:-60232698 MS.gene30742:intron
GACAAATTTGAGGGACTAGA+AGG 0.370908 3.1:-60231552 MS.gene30742:CDS
ATGCAATTGGAGCTGGAGAT+TGG 0.373155 3.1:-60232405 MS.gene30742:CDS
TGAAATTGAATACGGAAATT+GGG 0.386776 3.1:-60232100 MS.gene30742:CDS
ACAAGAGACTACAAACAATA+AGG 0.391876 3.1:-60232871 MS.gene30742:intron
TTCAGATGATCCCATAAAAC+TGG 0.394744 3.1:+60232226 None:intergenic
TCCTTGTGAAAGAGCATCTT+CGG 0.402772 3.1:+60231665 None:intergenic
CAGATTGAAGCTCATGCAAT+TGG 0.405773 3.1:-60232418 MS.gene30742:CDS
GTTGCGTTTGAAATTGAATA+CGG 0.408058 3.1:-60232108 MS.gene30742:CDS
AAATAAACTCCAGGAGAGTC+TGG 0.422863 3.1:-60231640 MS.gene30742:CDS
TGAGCTCTTCGTTCCGCCTA+TGG 0.423220 3.1:+60232067 None:intergenic
TGCAATTGGAGCTGGAGATT+GGG 0.428890 3.1:-60232404 MS.gene30742:CDS
TCAGCTTCTGAATGATCCCT+TGG 0.431043 3.1:+60232894 None:intergenic
AGTAATCCTAGGTGATATCT+TGG 0.431819 3.1:+60231162 None:intergenic
GTCCGAAGTGCAGCTTCGTC+TGG 0.433393 3.1:-60232022 MS.gene30742:CDS
GTCTACACACCAAGCTGCTA+GGG 0.462470 3.1:-60231260 MS.gene30742:CDS
ATGGAACAAATGCCATGTCT+TGG 0.464262 3.1:+60231616 None:intergenic
GGTGACAGCTTTAAAGTTGA+AGG 0.469579 3.1:-60233134 MS.gene30742:CDS
CCATTAAATGCAGCAAATCA+TGG 0.469880 3.1:-60231597 MS.gene30742:CDS
GTCGACAGGCAGATCATCTC+AGG 0.470981 3.1:-60231315 MS.gene30742:intron
TAGGGGCTTGATTGCTCTTG+GGG 0.473329 3.1:-60231242 MS.gene30742:CDS
TGTCTTGGACCAGACTCTCC+TGG 0.474340 3.1:+60231631 None:intergenic
CACATGCTAACTTGCTGGAA+TGG 0.476844 3.1:+60233158 None:intergenic
TAGCAGCTTGGTGTGTAGAC+AGG 0.495952 3.1:+60231263 None:intergenic
ATCCTCCGATCCATAGGAAA+AGG 0.500037 3.1:+60231887 None:intergenic
CCATAGGAAAAGGCGCTCTA+CGG 0.507714 3.1:+60231897 None:intergenic
GATTGGGAGAGCAAGAAAGC+AGG 0.518438 3.1:-60232388 MS.gene30742:intron
TATTGCTATAGACAAATTTG+AGG 0.520557 3.1:-60231562 MS.gene30742:CDS
TAGTTGCAGGGTATTTGCAC+AGG 0.526630 3.1:-60232263 MS.gene30742:intron
TGTCTACACACCAAGCTGCT+AGG 0.531973 3.1:-60231261 MS.gene30742:CDS
TGTACATTTAGAAGTTGTGA+TGG 0.532177 3.1:+60231859 None:intergenic
GAAGCTCATGCAATTGGAGC+TGG 0.532336 3.1:-60232412 MS.gene30742:CDS
GAGAGGCTGCTAAGAAAAGC+CGG 0.533392 3.1:-60232711 MS.gene30742:CDS
AATGAAAACGGATGCTGCAA+AGG 0.533573 3.1:-60231959 MS.gene30742:CDS
GATCCCCTCTATTTAATCTC+CGG 0.535169 3.1:-60231934 MS.gene30742:CDS
CAATCAAGCCCCTAGCAGCT+TGG 0.546448 3.1:+60231251 None:intergenic
TTCCTCTAAGGAGTAATCCT+AGG 0.546737 3.1:+60231151 None:intergenic
CTTGGTGTGTAGACAGGATG+CGG 0.550201 3.1:+60231269 None:intergenic
TTACTGTTCACTAGTAACAT+TGG 0.550321 3.1:+60233089 None:intergenic
ATTGCTATAGACAAATTTGA+GGG 0.550505 3.1:-60231561 MS.gene30742:CDS
GTACATTTAGAAGTTGTGAT+GGG 0.555666 3.1:+60231860 None:intergenic
ACACACCGGAGATTAAATAG+AGG 0.563190 3.1:+60231929 None:intergenic
ATTGGGTTGACGAGAACCAT+AGG 0.567572 3.1:-60232083 MS.gene30742:CDS
GGTGATATCTTGGAATCGAA+TGG 0.569812 3.1:+60231172 None:intergenic
TCTATTTAATCTCCGGTGTG+TGG 0.577155 3.1:-60231927 MS.gene30742:CDS
AGGAAAAGGCGCTCTACGGA+TGG 0.579044 3.1:+60231901 None:intergenic
TCAGACAAAGGCTCAAGTTG+TGG 0.581334 3.1:+60231735 None:intergenic
CACACCGGAGATTAAATAGA+GGG 0.585253 3.1:+60231930 None:intergenic
GAATGATCCCTTGGTTCATG+AGG 0.586065 3.1:+60232903 None:intergenic
CATTCCAGCAAGTTAGCATG+TGG 0.586492 3.1:-60233157 MS.gene30742:CDS
AGAGGCTGCTAAGAAAAGCC+GGG 0.588682 3.1:-60232710 MS.gene30742:CDS
CAGCCTCTCGATTCTGTGCG+AGG 0.589111 3.1:+60232725 None:intergenic
ACAAGGACTAAATAAACTCC+AGG 0.589120 3.1:-60231649 MS.gene30742:CDS
GGCGAGATCCTCCGATCCAT+AGG 0.593085 3.1:+60231881 None:intergenic
TTCCAGCAAGTTAGCATGTG+GGG 0.599412 3.1:-60233155 MS.gene30742:CDS
AACCAGACGAAGCTGCACTT+CGG 0.601003 3.1:+60232020 None:intergenic
GCCGAAGATGCTCTTTCACA+AGG 0.601136 3.1:-60231666 MS.gene30742:CDS
AATATATTCCTCATGAACCA+AGG 0.603855 3.1:-60232911 MS.gene30742:CDS
AACATTTGTTCATCAGACAA+AGG 0.607845 3.1:+60231723 None:intergenic
GGAGAGTCTGGTCCAAGACA+TGG 0.608703 3.1:-60231628 MS.gene30742:CDS
AGCAAATCATGGAATTCAGA+TGG 0.610088 3.1:-60231586 MS.gene30742:CDS
TTGGTGTGTAGACAGGATGC+GGG 0.620480 3.1:+60231270 None:intergenic
TACGGATGGTTTCCACACAC+CGG 0.623678 3.1:+60231915 None:intergenic
ATATATTCCTCATGAACCAA+GGG 0.628071 3.1:-60232910 MS.gene30742:CDS
GACAGCTTTAAAGTTGAAGG+TGG 0.628685 3.1:-60233131 MS.gene30742:CDS
ATTCCAGCAAGTTAGCATGT+GGG 0.642837 3.1:-60233156 MS.gene30742:CDS
TCATCTGAAACAATTAACCC+AGG 0.648000 3.1:-60232212 MS.gene30742:intron
TCGATTCCAAGATATCACCT+AGG 0.670756 3.1:-60231168 MS.gene30742:CDS
TCTACACACCAAGCTGCTAG+GGG 0.671811 3.1:-60231259 MS.gene30742:CDS
ACGCCTCGCACAGAATCGAG+AGG 0.704571 3.1:-60232728 MS.gene30742:CDS
ACACCGGAGATTAAATAGAG+GGG 0.728769 3.1:+60231931 None:intergenic
GGGTTGACGAGAACCATAGG+CGG 0.739081 3.1:-60232080 MS.gene30742:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTAATATAATTTACTTAT+AGG - chr3.1:60231651-60231670 MS.gene30742:CDS 15.0%
!! TAGCGAATTAGATTAAAAAT+TGG - chr3.1:60232506-60232525 MS.gene30742:intron 20.0%
!! TCAATTTGATAAATTGTGAA+TGG - chr3.1:60232983-60233002 MS.gene30742:intron 20.0%
!!! ATGTTTTATCACAAACATTT+TGG + chr3.1:60231530-60231549 None:intergenic 20.0%
!!! GGTAAATAAATTGTTAGTTT+TGG + chr3.1:60231971-60231990 None:intergenic 20.0%
! AAAATTTCTACTTTAGTTGC+AGG - chr3.1:60232053-60232072 MS.gene30742:CDS 25.0%
! AAATTTCTACTTTAGTTGCA+GGG - chr3.1:60232054-60232073 MS.gene30742:CDS 25.0%
! AACTAAGTTAGTTAGTTAGT+TGG + chr3.1:60231809-60231828 None:intergenic 25.0%
! ATATAAATCAGAAGTGAAGA+TGG + chr3.1:60231992-60232011 None:intergenic 25.0%
! ATTGCTATAGACAAATTTGA+GGG - chr3.1:60232768-60232787 MS.gene30742:intron 25.0%
! CTAGTTATAATTTGAACATC+AGG + chr3.1:60232881-60232900 None:intergenic 25.0%
! GAACAATGTAATGATGAATA+TGG + chr3.1:60232965-60232984 None:intergenic 25.0%
! TATTGCTATAGACAAATTTG+AGG - chr3.1:60232767-60232786 MS.gene30742:intron 25.0%
! TGAAATTGAATACGGAAATT+GGG - chr3.1:60232229-60232248 MS.gene30742:CDS 25.0%
! TTGAAATTGAATACGGAAAT+TGG - chr3.1:60232228-60232247 MS.gene30742:CDS 25.0%
!! AGATCTTTTCAGAATGAAAA+CGG - chr3.1:60232358-60232377 MS.gene30742:intron 25.0%
!! AGCATATGTTTTCATATTTG+TGG + chr3.1:60231852-60231871 None:intergenic 25.0%
AACATTTGTTCATCAGACAA+AGG + chr3.1:60232609-60232628 None:intergenic 30.0%
AATATATTCCTCATGAACCA+AGG - chr3.1:60231418-60231437 MS.gene30742:intron 30.0%
ACAAGAGACTACAAACAATA+AGG - chr3.1:60231458-60231477 MS.gene30742:intron 30.0%
ATATATTCCTCATGAACCAA+GGG - chr3.1:60231419-60231438 MS.gene30742:intron 30.0%
ATATCAAGAATCACAAACCT+GGG + chr3.1:60232137-60232156 None:intergenic 30.0%
CCAAGAAATTTGAATCAACT+AGG - chr3.1:60232824-60232843 MS.gene30742:intron 30.0%
GTACATTTAGAAGTTGTGAT+GGG + chr3.1:60232472-60232491 None:intergenic 30.0%
TAATGATTAGTGATTCGTTG+AGG + chr3.1:60232543-60232562 None:intergenic 30.0%
TGTACATTTAGAAGTTGTGA+TGG + chr3.1:60232473-60232492 None:intergenic 30.0%
TTACTGTTCACTAGTAACAT+TGG + chr3.1:60231243-60231262 None:intergenic 30.0%
TTCGTACTATTTGTTCTCTA+TGG - chr3.1:60233125-60233144 MS.gene30742:CDS 30.0%
! CCTAGTTGATTCAAATTTCT+TGG + chr3.1:60232827-60232846 None:intergenic 30.0%
! GTTGCGTTTGAAATTGAATA+CGG - chr3.1:60232221-60232240 MS.gene30742:CDS 30.0%
! TGTTCCTTTGTTGTGTAAAA+CGG - chr3.1:60231689-60231708 MS.gene30742:CDS 30.0%
!! AACTGTTCTATTGAGTTGAA+TGG + chr3.1:60231744-60231763 None:intergenic 30.0%
!! ACTGTTCTATTGAGTTGAAT+GGG + chr3.1:60231743-60231762 None:intergenic 30.0%
ACAAGGACTAAATAAACTCC+AGG - chr3.1:60232680-60232699 MS.gene30742:intron 35.0%
ACATATGCTTGATATTGTGC+AGG - chr3.1:60231863-60231882 MS.gene30742:intron 35.0%
ACTGTCATCCCAAAATAATG+AGG + chr3.1:60232910-60232929 None:intergenic 35.0%
AGAGTCTGACTCATTTAATG+TGG - chr3.1:60231349-60231368 MS.gene30742:intron 35.0%
AGCAAATCATGGAATTCAGA+TGG - chr3.1:60232743-60232762 MS.gene30742:intron 35.0%
AGTAATCCTAGGTGATATCT+TGG + chr3.1:60233170-60233189 None:intergenic 35.0%
ATCTTTGTGTTCTGTTAACC+AGG - chr3.1:60232194-60232213 MS.gene30742:intron 35.0%
CATCCCAAAATAATGAGGAA+GGG + chr3.1:60232905-60232924 None:intergenic 35.0%
CCATTAAATGCAGCAAATCA+TGG - chr3.1:60232732-60232751 MS.gene30742:CDS 35.0%
GATATCAAGAATCACAAACC+TGG + chr3.1:60232138-60232157 None:intergenic 35.0%
GGTTGAGGAAATGAAAATTG+AGG - chr3.1:60231710-60231729 MS.gene30742:CDS 35.0%
TCATCCCAAAATAATGAGGA+AGG + chr3.1:60232906-60232925 None:intergenic 35.0%
TCCCATAAAACTGGTATCTA+AGG + chr3.1:60232097-60232116 None:intergenic 35.0%
TCTTTGTGTTCTGTTAACCA+GGG - chr3.1:60232195-60232214 MS.gene30742:intron 35.0%
TTCAGATGATCCCATAAAAC+TGG + chr3.1:60232106-60232125 None:intergenic 35.0%
! AGACCCTTCCTCATTATTTT+GGG - chr3.1:60232899-60232918 MS.gene30742:CDS 35.0%
! TAGACCCTTCCTCATTATTT+TGG - chr3.1:60232898-60232917 MS.gene30742:CDS 35.0%
! TCAACCGTTTTACACAACAA+AGG + chr3.1:60231696-60231715 None:intergenic 35.0%
! TCATCTGAAACAATTAACCC+AGG - chr3.1:60232117-60232136 MS.gene30742:intron 35.0%
! TTTGTTGTGTAAAACGGTTG+AGG - chr3.1:60231695-60231714 MS.gene30742:CDS 35.0%
!! ACTAGAAGGTTTTGTAATCC+AGG - chr3.1:60232791-60232810 MS.gene30742:intron 35.0%
!! CCATGATTTGCTGCATTTAA+TGG + chr3.1:60232735-60232754 None:intergenic 35.0%
!! GCCTTAGATACCAGTTTTAT+GGG - chr3.1:60232093-60232112 MS.gene30742:CDS 35.0%
!! TTTCTTGGTGTTACATTACC+TGG + chr3.1:60232812-60232831 None:intergenic 35.0%
AAATAAACTCCAGGAGAGTC+TGG - chr3.1:60232689-60232708 MS.gene30742:intron 40.0%
AATGAAAACGGATGCTGCAA+AGG - chr3.1:60232370-60232389 MS.gene30742:intron 40.0%
ACACACCGGAGATTAAATAG+AGG + chr3.1:60232403-60232422 None:intergenic 40.0%
ACACCGGAGATTAAATAGAG+GGG + chr3.1:60232401-60232420 None:intergenic 40.0%
ATGGAACAAATGCCATGTCT+TGG + chr3.1:60232716-60232735 None:intergenic 40.0%
ATTCCAGCAAGTTAGCATGT+GGG - chr3.1:60231173-60231192 MS.gene30742:CDS 40.0%
ATTTCAAACGCAACAATCCC+TGG + chr3.1:60232215-60232234 None:intergenic 40.0%
CACACCGGAGATTAAATAGA+GGG + chr3.1:60232402-60232421 None:intergenic 40.0%
CAGATTGAAGCTCATGCAAT+TGG - chr3.1:60231911-60231930 MS.gene30742:CDS 40.0%
GAACAGTAACACTACTAGCA+TGG - chr3.1:60231254-60231273 MS.gene30742:CDS 40.0%
GACAAATTTGAGGGACTAGA+AGG - chr3.1:60232777-60232796 MS.gene30742:intron 40.0%
GATCCCCTCTATTTAATCTC+CGG - chr3.1:60232395-60232414 MS.gene30742:CDS 40.0%
GGTGATATCTTGGAATCGAA+TGG + chr3.1:60233160-60233179 None:intergenic 40.0%
GTGTCTGTGACATTATGTGT+AGG - chr3.1:60231571-60231590 MS.gene30742:CDS 40.0%
TCGATTCCAAGATATCACCT+AGG - chr3.1:60233161-60233180 MS.gene30742:CDS 40.0%
TCTATTTAATCTCCGGTGTG+TGG - chr3.1:60232402-60232421 MS.gene30742:CDS 40.0%
! ATATTACCTTTTTGCGCTCC+CGG + chr3.1:60231640-60231659 None:intergenic 40.0%
! CGCCTTAGATACCAGTTTTA+TGG - chr3.1:60232092-60232111 MS.gene30742:CDS 40.0%
!! GACAGCTTTAAAGTTGAAGG+TGG - chr3.1:60231198-60231217 MS.gene30742:CDS 40.0%
!! GGTGACAGCTTTAAAGTTGA+AGG - chr3.1:60231195-60231214 MS.gene30742:CDS 40.0%
!! TCCTTGTGAAAGAGCATCTT+CGG + chr3.1:60232667-60232686 None:intergenic 40.0%
ATCCTCCGATCCATAGGAAA+AGG + chr3.1:60232445-60232464 None:intergenic 45.0%
ATGCAATTGGAGCTGGAGAT+TGG - chr3.1:60231924-60231943 MS.gene30742:CDS 45.0%
CACTACTAGCATGGAGAACA+AGG - chr3.1:60231263-60231282 MS.gene30742:CDS 45.0%
CATTCCAGCAAGTTAGCATG+TGG - chr3.1:60231172-60231191 MS.gene30742:CDS 45.0%
GAATGATCCCTTGGTTCATG+AGG + chr3.1:60231429-60231448 None:intergenic 45.0%
TCAGCTTCTGAATGATCCCT+TGG + chr3.1:60231438-60231457 None:intergenic 45.0%
TGCAATTGGAGCTGGAGATT+GGG - chr3.1:60231925-60231944 MS.gene30742:CDS 45.0%
TTCCAGCAAGTTAGCATGTG+GGG - chr3.1:60231174-60231193 MS.gene30742:CDS 45.0%
! GAATGGTTTGTGTTGTCGAC+AGG - chr3.1:60233000-60233019 MS.gene30742:intron 45.0%
! TAGTTGCAGGGTATTTGCAC+AGG - chr3.1:60232066-60232085 MS.gene30742:CDS 45.0%
! TCAGACAAAGGCTCAAGTTG+TGG + chr3.1:60232597-60232616 None:intergenic 45.0%
!! ATTGGGTTGACGAGAACCAT+AGG - chr3.1:60232246-60232265 MS.gene30742:CDS 45.0%
!! CACATGCTAACTTGCTGGAA+TGG + chr3.1:60231174-60231193 None:intergenic 45.0%
AACCAGACGAAGCTGCACTT+CGG + chr3.1:60232312-60232331 None:intergenic 50.0%
AGAGGCTGCTAAGAAAAGCC+GGG - chr3.1:60231619-60231638 MS.gene30742:CDS 50.0%
CTAGGGGCTTGATTGCTCTT+GGG - chr3.1:60233086-60233105 MS.gene30742:intron 50.0%
GAAGCTCATGCAATTGGAGC+TGG - chr3.1:60231917-60231936 MS.gene30742:CDS 50.0%
GAGAGGCTGCTAAGAAAAGC+CGG - chr3.1:60231618-60231637 MS.gene30742:CDS 50.0%
GATTGGGAGAGCAAGAAAGC+AGG - chr3.1:60231941-60231960 MS.gene30742:CDS 50.0%
GCCGAAGATGCTCTTTCACA+AGG - chr3.1:60232663-60232682 MS.gene30742:intron 50.0%
GTCTACACACCAAGCTGCTA+GGG - chr3.1:60233069-60233088 MS.gene30742:intron 50.0%
GTTGTGGCACAATGAGCTGT+AGG + chr3.1:60232581-60232600 None:intergenic 50.0%
TACGGATGGTTTCCACACAC+CGG + chr3.1:60232417-60232436 None:intergenic 50.0%
TAGGGGCTTGATTGCTCTTG+GGG - chr3.1:60233087-60233106 MS.gene30742:intron 50.0%
TCTACACACCAAGCTGCTAG+GGG - chr3.1:60233070-60233089 MS.gene30742:intron 50.0%
TGTCTACACACCAAGCTGCT+AGG - chr3.1:60233068-60233087 MS.gene30742:intron 50.0%
TTGGTGTGTAGACAGGATGC+GGG + chr3.1:60233062-60233081 None:intergenic 50.0%
! CTTGGTGTGTAGACAGGATG+CGG + chr3.1:60233063-60233082 None:intergenic 50.0%
! GAGCGCCTTTTCCTATGGAT+CGG - chr3.1:60232437-60232456 MS.gene30742:CDS 50.0%
!! CCATAGGAAAAGGCGCTCTA+CGG + chr3.1:60232435-60232454 None:intergenic 50.0%
!! TAGCAGCTTGGTGTGTAGAC+AGG + chr3.1:60233069-60233088 None:intergenic 50.0%
CAATCAAGCCCCTAGCAGCT+TGG + chr3.1:60233081-60233100 None:intergenic 55.0%
GCTAGGGGCTTGATTGCTCT+TGG - chr3.1:60233085-60233104 MS.gene30742:intron 55.0%
GGAGAGTCTGGTCCAAGACA+TGG - chr3.1:60232701-60232720 MS.gene30742:CDS 55.0%
GGGTTGACGAGAACCATAGG+CGG - chr3.1:60232249-60232268 MS.gene30742:CDS 55.0%
GTCGACAGGCAGATCATCTC+AGG - chr3.1:60233014-60233033 MS.gene30742:intron 55.0%
GTGGCACAATGAGCTGTAGG+AGG + chr3.1:60232578-60232597 None:intergenic 55.0%
TGAGCTCTTCGTTCCGCCTA+TGG + chr3.1:60232265-60232284 None:intergenic 55.0%
TGTCTTGGACCAGACTCTCC+TGG + chr3.1:60232701-60232720 None:intergenic 55.0%
! CACCCCACATGCTAACTTGC+TGG + chr3.1:60231179-60231198 None:intergenic 55.0%
! CGCCTTTTCCTATGGATCGG+AGG - chr3.1:60232440-60232459 MS.gene30742:CDS 55.0%
! GAAAAGCCGGGAGCGCAAAA+AGG - chr3.1:60231631-60231650 MS.gene30742:CDS 55.0%
!! AGGAAAAGGCGCTCTACGGA+TGG + chr3.1:60232431-60232450 None:intergenic 55.0%
!! CCGTAGAGCGCCTTTTCCTA+TGG - chr3.1:60232432-60232451 MS.gene30742:CDS 55.0%
ACGCCTCGCACAGAATCGAG+AGG - chr3.1:60231601-60231620 MS.gene30742:CDS 60.0%
CAGCCTCTCGATTCTGTGCG+AGG + chr3.1:60231607-60231626 None:intergenic 60.0%
GGCGAGATCCTCCGATCCAT+AGG + chr3.1:60232451-60232470 None:intergenic 60.0%
GTCCGAAGTGCAGCTTCGTC+TGG - chr3.1:60232307-60232326 MS.gene30742:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 60231156 60233195 60231156 ID=MS.gene30742
chr3.1 mRNA 60231156 60233195 60231156 ID=MS.gene30742.t1;Parent=MS.gene30742
chr3.1 exon 60233100 60233195 60233100 ID=MS.gene30742.t1.exon1;Parent=MS.gene30742.t1
chr3.1 CDS 60233100 60233195 60233100 ID=cds.MS.gene30742.t1;Parent=MS.gene30742.t1
chr3.1 exon 60232872 60232937 60232872 ID=MS.gene30742.t1.exon2;Parent=MS.gene30742.t1
chr3.1 CDS 60232872 60232937 60232872 ID=cds.MS.gene30742.t1;Parent=MS.gene30742.t1
chr3.1 exon 60232699 60232758 60232699 ID=MS.gene30742.t1.exon3;Parent=MS.gene30742.t1
chr3.1 CDS 60232699 60232758 60232699 ID=cds.MS.gene30742.t1;Parent=MS.gene30742.t1
chr3.1 exon 60232389 60232466 60232389 ID=MS.gene30742.t1.exon4;Parent=MS.gene30742.t1
chr3.1 CDS 60232389 60232466 60232389 ID=cds.MS.gene30742.t1;Parent=MS.gene30742.t1
chr3.1 exon 60232213 60232276 60232213 ID=MS.gene30742.t1.exon5;Parent=MS.gene30742.t1
chr3.1 CDS 60232213 60232276 60232213 ID=cds.MS.gene30742.t1;Parent=MS.gene30742.t1
chr3.1 exon 60231864 60232135 60231864 ID=MS.gene30742.t1.exon6;Parent=MS.gene30742.t1
chr3.1 CDS 60231864 60232135 60231864 ID=cds.MS.gene30742.t1;Parent=MS.gene30742.t1
chr3.1 exon 60231539 60231766 60231539 ID=MS.gene30742.t1.exon7;Parent=MS.gene30742.t1
chr3.1 CDS 60231539 60231766 60231539 ID=cds.MS.gene30742.t1;Parent=MS.gene30742.t1
chr3.1 exon 60231156 60231329 60231156 ID=MS.gene30742.t1.exon8;Parent=MS.gene30742.t1
chr3.1 CDS 60231156 60231329 60231156 ID=cds.MS.gene30742.t1;Parent=MS.gene30742.t1
Gene Sequence

>MS.gene30742

ATGGATATATACGAGCCATTCCAGCAAGTTAGCATGTGGGGTGACAGCTTTAAAGTTGAAGGTGGTCTTAATTCAATTGCTTCTCCAATGTTACTAGTGAACAGTAACACTACTAGCATGGAGAACAAGGTGAGTTATTATTATAACTAATAATTTGATTTTATTTATGTATTATTGTTACTTTTATGATTATAGAGTCTGACTCATTTAATGTGGAAACTAGATTATATAACAATCTTATGAATATGAATTTTGCAGTCTGAATATATTCCTCATGAACCAAGGGATCATTCAGAAGCTGAACAAGAGACTACAAACAATAAGGTAATGAAATTTGATCAAGACATAAATTGTGACATTTTGATTTTTGTCCAAAATGTTTGTGATAAAACATGAAAGTTTTTGAGTTGTTTATGTGTCTGTGACATTATGTGTAGGTACTTAGACGCCTCGCACAGAATCGAGAGGCTGCTAAGAAAAGCCGGGAGCGCAAAAAGGTAATATAATTTACTTATAGGAAAAGTCATTTGATTTGTTCCTTTGTTGTGTAAAACGGTTGAGGAAATGAAAATTGAGGTTTTTATCCCATTCAACTCAATAGAACAGTTTATAAAGATGTAAGCAGTTATAACTGACTAACAAACATATTTCCAACTAACTAACTAACTTAGTTCTAACTAGCTTTTAACTAATCCACAAATATGAAAACATATGCTTGATATTGTGCAGGCTTATGTTAAACAATTAGAATCAAGCAGATTGAAGCTCATGCAATTGGAGCTGGAGATTGGGAGAGCAAGAAAGCAGGTGAACCAAAACTAACAATTTATTTACCATCTTCACTTCTGATTTATATTTATGTTATGCTCTTTCAATTGTAAATTTTAAGCATATATTAAAATTTCTACTTTAGTTGCAGGGTATTTGCACAGGAAGCGCCTTAGATACCAGTTTTATGGGATCATCTGAAACAATTAACCCAGGTTTGTGATTCTTGATATCAATTGTAAGCATTCTTAATATCTTTTATTCTTATTGATCTTTGTGTTCTGTTAACCAGGGATTGTTGCGTTTGAAATTGAATACGGAAATTGGGTTGACGAGAACCATAGGCGGAACGAAGAGCTCAGAAATGCATTTCAAACTAATGCGTCCGAAGTGCAGCTTCGTCTGGTTGTTCAGAGTGTCTTGAATCATTACTCAGATCTTTTCAGAATGAAAACGGATGCTGCAAAGGCTGATCCCCTCTATTTAATCTCCGGTGTGTGGAAACCATCCGTAGAGCGCCTTTTCCTATGGATCGGAGGATCTCGCCCATCACAACTTCTAAATGTACAAATCTGATCTTAATAGCGAATTAGATTAAAAATTGGTACTGTCGAATCCTCAACGAATCACTAATCATTATTAGATTTTTTTCCTCCTACAGCTCATTGTGCCACAACTTGAGCCTTTGTCTGATGAACAAATGTTGAGCATTAAAAAACTTCATCTGTCGTCTCAGCAAGCCGAAGATGCTCTTTCACAAGGACTAAATAAACTCCAGGAGAGTCTGGTCCAAGACATGGCATTTGTTCCATTAAATGCAGCAAATCATGGAATTCAGATGGCTATTGCTATAGACAAATTTGAGGGACTAGAAGGTTTTGTAATCCAGGTAATGTAACACCAAGAAATTTGAATCAACTAGGAATTTTCTAATGCAACTCTTTTATTCTAAGTCCTGATGTTCAAATTATAACTAGACCCTTCCTCATTATTTTGGGATGACAGTTCATATATTATGAATTAGTATTTCTTTATGCTCCATATTCATCATTACATTGTTCAATTTGATAAATTGTGAATGGTTTGTGTTGTCGACAGGCAGATCATCTCAGGCAGCAAACTCTGATACACATGTCCCGCATCCTGTCTACACACCAAGCTGCTAGGGGCTTGATTGCTCTTGGGGAATACTTTCATCGTCTTCGTACTATTTGTTCTCTATGGACTTCTTGTCCATTCGATTCCAAGATATCACCTAGGATTACTCCTTAG
Protein sequence

>MS.gene30742.t1

MDIYEPFQQVSMWGDSFKVEGGLNSIASPMLLSEYIPHEPRDHSEAEQETTNNKVLRRLAQNREAAKKSRERKKAYVKQLESSRLKLMQLELEIGRARKQGICTGSALDTSFMGSSETINPGIVAFEIEYGNWVDENHRRNEELRNAFQTNASEVQLRLVVQSVLNHYSDLFRMKTDAAKADPLYLISGVWKPSVERLFLWIGGSRPSQLLNLIVPQLEPLSDEQMLSIKKLHLSSQQAEDALSQGLNKLQESLVQDMAFVPLNAANHGIQMAIAIDKFEGLEGFVIQADHLRQQTLIHMSRILSTHQAARGLIALGEYFHRLRTICSLWTSCPFDSKISPRITP