Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30987.t1 | XP_003602576.2 | 96.6 | 235 | 6 | 2 | 1 | 235 | 1 | 233 | 6.50E-103 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30987.t1 | B9RU15 | 50.5 | 188 | 89 | 3 | 51 | 238 | 37 | 220 | 3.4e-44 | 179.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30987.t1 | G7JBG7 | 96.6 | 235 | 6 | 2 | 1 | 235 | 1 | 233 | 4.7e-103 | 383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene30987.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30987.t1 | MTR_3g095840 | 97.872 | 235 | 3 | 2 | 1 | 235 | 1 | 233 | 1.24e-166 | 465 |
| MS.gene30987.t1 | MTR_1g007670 | 54.268 | 164 | 71 | 2 | 74 | 236 | 26 | 186 | 4.02e-51 | 169 |
| MS.gene30987.t1 | MTR_3g095830 | 59.649 | 114 | 37 | 3 | 8 | 121 | 3 | 107 | 2.80e-39 | 132 |
| MS.gene30987.t1 | MTR_1g007700 | 40.625 | 160 | 61 | 2 | 74 | 233 | 258 | 383 | 1.36e-33 | 127 |
| MS.gene30987.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 2.59e-11 | 63.5 |
| MS.gene30987.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 2.74e-11 | 63.5 |
| MS.gene30987.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 3.07e-11 | 63.2 |
| MS.gene30987.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 3.30e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30987.t1 | AT5G09790 | 60.000 | 165 | 63 | 2 | 72 | 236 | 62 | 223 | 2.74e-65 | 207 |
| MS.gene30987.t1 | AT5G09790 | 59.394 | 165 | 63 | 2 | 72 | 236 | 62 | 222 | 3.32e-64 | 204 |
| MS.gene30987.t1 | AT5G24330 | 54.037 | 161 | 72 | 1 | 76 | 236 | 34 | 192 | 1.00e-52 | 174 |
Find 78 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCACCGTTCTCTAAAA+TGG | 0.242537 | 3.3:-79363337 | None:intergenic |
| CGTAGGGATTCTCTTGATTC+CGG | 0.245953 | 3.3:+79361219 | MS.gene30987:CDS |
| AGAAAATTCTCCATTTCTTC+GGG | 0.303724 | 3.3:+79361193 | MS.gene30987:CDS |
| AAGAAAATTCTCCATTTCTT+CGG | 0.317251 | 3.3:+79361192 | MS.gene30987:CDS |
| ATTTGCTTCAGCCTCCTATC+AGG | 0.349536 | 3.3:-79363219 | None:intergenic |
| GTAGGGATTCTCTTGATTCC+GGG | 0.353728 | 3.3:+79361220 | MS.gene30987:CDS |
| AATAAGCTGACGTACTTTCC+AGG | 0.362677 | 3.3:+79363288 | MS.gene30987:CDS |
| CCCTACGAAGCCCGAAGAAA+TGG | 0.364855 | 3.3:-79361203 | None:intergenic |
| GAACAATCGTGCTTCTTCTC+AGG | 0.365882 | 3.3:+79361242 | MS.gene30987:CDS |
| TGCTACTGCTTTAACAGCAT+TGG | 0.399408 | 3.3:+79363251 | MS.gene30987:CDS |
| TTCTGTACCACCAGAGGTCT+TGG | 0.407511 | 3.3:-79363156 | None:intergenic |
| AGAAGAAGCACGATTGTTCC+CGG | 0.418393 | 3.3:-79361238 | None:intergenic |
| ATCGGAACTCGAACAACAAT+TGG | 0.420274 | 3.3:-79360995 | None:intergenic |
| GCAGATCTAGGAGCCATTCC+TGG | 0.421695 | 3.3:-79363306 | None:intergenic |
| CGCTTGTTAATATATATAAG+AGG | 0.428689 | 3.3:+79360837 | MS.gene30987:CDS |
| ATGTGGGTCCGGTGAACAAC+CGG | 0.439307 | 3.3:+79360916 | MS.gene30987:CDS |
| GGATCTTCTGTAGGAACAAA+TGG | 0.446011 | 3.3:-79363198 | None:intergenic |
| GATTAAGCTTGATAGCTTGA+TGG | 0.452643 | 3.3:-79360720 | None:intergenic |
| CTCTGGTGGTACAGAAGAAA+AGG | 0.456244 | 3.3:+79363163 | MS.gene30987:CDS |
| GACCTTGACATCAGAACACT+TGG | 0.458131 | 3.3:-79361035 | None:intergenic |
| ACCTCCTGTGTGAGCAATGT+GGG | 0.458530 | 3.3:+79360900 | MS.gene30987:CDS |
| GCTGAGGAGGAGGAGGATTA+CGG | 0.459874 | 3.3:+79360875 | MS.gene30987:CDS |
| CTCCACCTTCGAGGAGGAGG+AGG | 0.460011 | 3.3:+79360799 | MS.gene30987:CDS |
| GGCTGAGTACACGGTGGCTG+AGG | 0.462695 | 3.3:+79360859 | MS.gene30987:CDS |
| CTCCTCTTCCTCCACCTTCG+AGG | 0.464032 | 3.3:+79360790 | MS.gene30987:CDS |
| CTCCTCGAAGGTGGAGGAAG+AGG | 0.464573 | 3.3:-79360792 | None:intergenic |
| TTCCTCCACCTTCGAGGAGG+AGG | 0.469701 | 3.3:+79360796 | MS.gene30987:CDS |
| CCATTTCTTCGGGCTTCGTA+GGG | 0.472840 | 3.3:+79361203 | MS.gene30987:CDS |
| GGGCAAATCCACGGACCAAT+CGG | 0.479975 | 3.3:-79361013 | None:intergenic |
| TCACATAAAAGCAGCTCCTC+CGG | 0.483953 | 3.3:-79360935 | None:intergenic |
| TGATAGGAGGCTGAAGCAAA+TGG | 0.484670 | 3.3:+79363221 | MS.gene30987:CDS |
| TCCATTTCTTCGGGCTTCGT+AGG | 0.489521 | 3.3:+79361202 | MS.gene30987:CDS |
| TTCCTACAGAAGATCCTGAT+AGG | 0.493201 | 3.3:+79363205 | MS.gene30987:CDS |
| AATGGCTCCGGCGACAGCTC+CGG | 0.497607 | 3.3:+79360679 | None:intergenic |
| ATGGATCGATTAGCAGATCT+AGG | 0.502517 | 3.3:-79363318 | None:intergenic |
| CTGTGTGAGCAATGTGGGTC+CGG | 0.504059 | 3.3:+79360905 | MS.gene30987:CDS |
| CACGGTGGCTGAGGAGGAGG+AGG | 0.506420 | 3.3:+79360868 | MS.gene30987:CDS |
| CAGCTCCTCCGGTTGTTCAC+CGG | 0.511216 | 3.3:-79360924 | None:intergenic |
| TCGGAGACGTCCAAGACCTC+TGG | 0.514165 | 3.3:+79363146 | MS.gene30987:CDS |
| TGAGTACACGGTGGCTGAGG+AGG | 0.515374 | 3.3:+79360862 | MS.gene30987:CDS |
| CCCCAAGTGTTCTGATGTCA+AGG | 0.520959 | 3.3:+79361033 | MS.gene30987:CDS |
| CTCCTCCTCCTCGAAGGTGG+AGG | 0.525162 | 3.3:-79360798 | None:intergenic |
| TTTAGAGAACGGTGGCATGC+AGG | 0.534531 | 3.3:+79363341 | MS.gene30987:CDS |
| ACCTTGACATCAGAACACTT+GGG | 0.540926 | 3.3:-79361034 | None:intergenic |
| AACAATCGTGCTTCTTCTCA+GGG | 0.545517 | 3.3:+79361243 | MS.gene30987:CDS |
| GTACACGGTGGCTGAGGAGG+AGG | 0.545768 | 3.3:+79360865 | MS.gene30987:CDS |
| TTCGAGTTCCGATTGGTCCG+TGG | 0.546720 | 3.3:+79361005 | MS.gene30987:CDS |
| GGAGACGCCGGAGCTGTCGC+CGG | 0.559953 | 3.3:-79360686 | None:intergenic |
| ATTGTTGTTCGAGTTCCGAT+TGG | 0.560719 | 3.3:+79360998 | MS.gene30987:CDS |
| CTCGAAGGTGGAGGAAGAGG+AGG | 0.563327 | 3.3:-79360789 | None:intergenic |
| CCCCTCCTCCTCCTCGAAGG+TGG | 0.568245 | 3.3:-79360801 | None:intergenic |
| CAACCTCACCTGAATGGCTC+CGG | 0.568822 | 3.3:+79360667 | None:intergenic |
| ATGCTGTTAAAGCAGTAGCA+AGG | 0.571401 | 3.3:-79363248 | None:intergenic |
| TGCTGTTAAAGCAGTAGCAA+GGG | 0.574924 | 3.3:-79363247 | None:intergenic |
| CCACCTTCGAGGAGGAGGAG+GGG | 0.583605 | 3.3:+79360801 | MS.gene30987:CDS |
| TCCACCTTCGAGGAGGAGGA+GGG | 0.584045 | 3.3:+79360800 | MS.gene30987:CDS |
| CTTTAGATGCTATGAAGCGT+CGG | 0.589068 | 3.3:+79363127 | MS.gene30987:intron |
| ATTCCCCTCCTCCTCCTCGA+AGG | 0.589669 | 3.3:-79360804 | None:intergenic |
| CTTGATAGCTTGATGGAAGA+CGG | 0.590190 | 3.3:-79360713 | None:intergenic |
| GCTTGTTAATATATATAAGA+GGG | 0.591764 | 3.3:+79360838 | MS.gene30987:CDS |
| GCTGACGTACTTTCCAGGAA+TGG | 0.592256 | 3.3:+79363293 | MS.gene30987:CDS |
| CTCCTATCAGGATCTTCTGT+AGG | 0.592606 | 3.3:-79363207 | None:intergenic |
| GAACACTTGGGGCAAATCCA+CGG | 0.593747 | 3.3:-79361022 | None:intergenic |
| GAAGACGGCGATGGAGACGC+CGG | 0.596034 | 3.3:-79360698 | None:intergenic |
| CCTTGACATCAGAACACTTG+GGG | 0.598005 | 3.3:-79361033 | None:intergenic |
| ATATAAGAGGGCTGAGTACA+CGG | 0.598652 | 3.3:+79360850 | MS.gene30987:CDS |
| AGCTTGATGGAAGACGGCGA+TGG | 0.603823 | 3.3:-79360707 | None:intergenic |
| TTATGTGACAAATGTGACAA+TGG | 0.612992 | 3.3:+79360950 | MS.gene30987:CDS |
| TGTGAGGTGCATGGGTGCGG+CGG | 0.615402 | 3.3:-79360742 | None:intergenic |
| CTCTTCCTCCACCTTCGAGG+AGG | 0.618161 | 3.3:+79360793 | MS.gene30987:CDS |
| CGGACCCACATTGCTCACAC+AGG | 0.629732 | 3.3:-79360904 | None:intergenic |
| CTACAGAAGATCCTGATAGG+AGG | 0.635132 | 3.3:+79363208 | MS.gene30987:CDS |
| ACCCACATTGCTCACACAGG+AGG | 0.655882 | 3.3:-79360901 | None:intergenic |
| GACCTCCTGTGTGAGCAATG+TGG | 0.660393 | 3.3:+79360899 | MS.gene30987:CDS |
| TGGTACAGAAGAAAAGGAGA+AGG | 0.674031 | 3.3:+79363169 | MS.gene30987:CDS |
| GAGACGTCCAAGACCTCTGG+TGG | 0.674893 | 3.3:+79363149 | MS.gene30987:CDS |
| TGGGTCCGGTGAACAACCGG+AGG | 0.676363 | 3.3:+79360919 | MS.gene30987:CDS |
| TAAGAGGGCTGAGTACACGG+TGG | 0.812154 | 3.3:+79360853 | MS.gene30987:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAAATATTTTTTTAT+TGG | + | chr3.3:79361303-79361322 | MS.gene30987:intron | 0.0% |
| !! | AAACATATGAATTAATTATT+TGG | + | chr3.3:79361586-79361605 | MS.gene30987:intron | 10.0% |
| !!! | ATCTTTAGAAAATATTTAAT+TGG | + | chr3.3:79362872-79362891 | MS.gene30987:intron | 10.0% |
| !! | ATATATACATGATATCTAAT+TGG | + | chr3.3:79363071-79363090 | MS.gene30987:intron | 15.0% |
| !! | AAAAGATTAAGTGATTAAGT+TGG | + | chr3.3:79362460-79362479 | MS.gene30987:intron | 20.0% |
| !! | AAAAGTTGTAGGAAAAAAAA+AGG | - | chr3.3:79362928-79362947 | None:intergenic | 20.0% |
| !! | AGTATAATTTGACATTAATG+TGG | + | chr3.3:79362554-79362573 | MS.gene30987:intron | 20.0% |
| !! | TCAAAACATAAAAAAGTTGT+AGG | - | chr3.3:79362939-79362958 | None:intergenic | 20.0% |
| !! | TTCAAATCAAACAATAGAAT+AGG | - | chr3.3:79362096-79362115 | None:intergenic | 20.0% |
| !!! | CAAAAGAACTAGAATTTTTT+TGG | + | chr3.3:79362667-79362686 | MS.gene30987:intron | 20.0% |
| !!! | GCTTGTTAATATATATAAGA+GGG | + | chr3.3:79360838-79360857 | MS.gene30987:CDS | 20.0% |
| !!! | TATTCTATTGTTTGATTTGA+AGG | + | chr3.3:79362095-79362114 | MS.gene30987:intron | 20.0% |
| !!! | TCGTGGATTATAAATATTTT+TGG | + | chr3.3:79361510-79361529 | MS.gene30987:intron | 20.0% |
| !!! | TTAAATTTTTGTGTGAACAT+GGG | + | chr3.3:79361616-79361635 | MS.gene30987:intron | 20.0% |
| !!! | TTGATTTGTTGTAGTTATTT+TGG | + | chr3.3:79361753-79361772 | MS.gene30987:intron | 20.0% |
| !!! | TTTAAATTTTTGTGTGAACA+TGG | + | chr3.3:79361615-79361634 | MS.gene30987:intron | 20.0% |
| ! | AACATTACTATCGCAAAAAT+AGG | - | chr3.3:79361929-79361948 | None:intergenic | 25.0% |
| ! | AAGAAAATTCTCCATTTCTT+CGG | + | chr3.3:79361192-79361211 | MS.gene30987:CDS | 25.0% |
| ! | ATGAAGGAACAAATATCAAA+AGG | - | chr3.3:79362764-79362783 | None:intergenic | 25.0% |
| ! | ATTTCGTACAAAGTCATTTA+GGG | - | chr3.3:79362266-79362285 | None:intergenic | 25.0% |
| ! | CAAATCAAGCTTAAAATTTG+TGG | - | chr3.3:79361741-79361760 | None:intergenic | 25.0% |
| ! | CAATGTTTGGATATTTGATT+TGG | + | chr3.3:79361378-79361397 | MS.gene30987:intron | 25.0% |
| ! | CGATAGTAATGTTAATCTTA+AGG | + | chr3.3:79361936-79361955 | MS.gene30987:intron | 25.0% |
| ! | TATTTCGTACAAAGTCATTT+AGG | - | chr3.3:79362267-79362286 | None:intergenic | 25.0% |
| ! | TCTTCTTAATTTATCCATTC+TGG | + | chr3.3:79363103-79363122 | MS.gene30987:intron | 25.0% |
| ! | TGAAGGAACAAATATCAAAA+GGG | - | chr3.3:79362763-79362782 | None:intergenic | 25.0% |
| ! | TGTGATTGTGATTATTAATG+TGG | + | chr3.3:79361125-79361144 | MS.gene30987:intron | 25.0% |
| ! | TGTTTCTTTACAAATTGTGT+TGG | + | chr3.3:79361683-79361702 | MS.gene30987:intron | 25.0% |
| !! | CGCTTGTTAATATATATAAG+AGG | + | chr3.3:79360837-79360856 | MS.gene30987:CDS | 25.0% |
| !! | TAAATTTTTGTGTGAACATG+GGG | + | chr3.3:79361617-79361636 | MS.gene30987:intron | 25.0% |
| !! | TTTTGTCAATATGCAATGTT+TGG | + | chr3.3:79361365-79361384 | MS.gene30987:intron | 25.0% |
| !!! | AGATTGTTTCTGAAAATTTG+TGG | + | chr3.3:79362210-79362229 | MS.gene30987:intron | 25.0% |
| !!! | ATTGTTTCTGAAAATTTGTG+GGG | + | chr3.3:79362212-79362231 | MS.gene30987:intron | 25.0% |
| !!! | GATTGTTTCTGAAAATTTGT+GGG | + | chr3.3:79362211-79362230 | MS.gene30987:intron | 25.0% |
| !!! | TAGAATTTTTTTGGCTTACT+AGG | + | chr3.3:79362676-79362695 | MS.gene30987:intron | 25.0% |
| ACTTATTCTCTAGCAAATCA+TGG | - | chr3.3:79362601-79362620 | None:intergenic | 30.0% | |
| AGAAAATTCTCCATTTCTTC+GGG | + | chr3.3:79361193-79361212 | MS.gene30987:CDS | 30.0% | |
| ATAGAGATACCATCGTTTAA+TGG | + | chr3.3:79362392-79362411 | MS.gene30987:intron | 30.0% | |
| ATGCTTATGTTTACCTAGAA+TGG | + | chr3.3:79362807-79362826 | MS.gene30987:intron | 30.0% | |
| ATTACTATCGCAAAAATAGG+AGG | - | chr3.3:79361926-79361945 | None:intergenic | 30.0% | |
| ATTCCTTCACAAATTGGTTA+TGG | + | chr3.3:79361876-79361895 | MS.gene30987:intron | 30.0% | |
| CAATTTCAGCAAAAACATGA+AGG | - | chr3.3:79362780-79362799 | None:intergenic | 30.0% | |
| GTAAATGTGTTTACCATTCT+AGG | - | chr3.3:79362823-79362842 | None:intergenic | 30.0% | |
| TAAAGAAACATTGCCACAAA+CGG | - | chr3.3:79361673-79361692 | None:intergenic | 30.0% | |
| TGCATGACAAGTTATATGTA+AGG | + | chr3.3:79362013-79362032 | MS.gene30987:intron | 30.0% | |
| TTATATGTAAGGCAGCTATA+AGG | + | chr3.3:79362024-79362043 | MS.gene30987:intron | 30.0% | |
| TTATGTGACAAATGTGACAA+TGG | + | chr3.3:79360950-79360969 | MS.gene30987:CDS | 30.0% | |
| TTGCTAGAGAATAAGTTACT+AGG | + | chr3.3:79362605-79362624 | MS.gene30987:intron | 30.0% | |
| TTTAATGGCACTTGAAATAG+AGG | + | chr3.3:79362407-79362426 | MS.gene30987:intron | 30.0% | |
| TTTACAAATTGTGTTGGACA+TGG | + | chr3.3:79361689-79361708 | MS.gene30987:intron | 30.0% | |
| ! | AGCTTCTTTTGAATTTTGTG+AGG | - | chr3.3:79360761-79360780 | None:intergenic | 30.0% |
| ! | CTATAGATTTTTCCATCATC+AGG | + | chr3.3:79361713-79361732 | MS.gene30987:intron | 30.0% |
| !! | AATCGATCCATTTTAGAGAA+CGG | + | chr3.3:79363330-79363349 | MS.gene30987:CDS | 30.0% |
| !! | ATCTTTTGTGTCACTAAACA+TGG | - | chr3.3:79362447-79362466 | None:intergenic | 30.0% |
| !! | GTTCTAACTTCAAAAGTACT+CGG | + | chr3.3:79362965-79362984 | MS.gene30987:intron | 30.0% |
| !! | GTTTTTGATCAGTTGTTGTT+TGG | + | chr3.3:79361414-79361433 | MS.gene30987:intron | 30.0% |
| !! | TATTGTTTGATTTGAAGGCA+AGG | + | chr3.3:79362100-79362119 | MS.gene30987:intron | 30.0% |
| !! | TTCTAACTTCAAAAGTACTC+GGG | + | chr3.3:79362966-79362985 | MS.gene30987:intron | 30.0% |
| !!! | TGTAGTTATTTTGGTGTCTT+GGG | + | chr3.3:79361762-79361781 | MS.gene30987:intron | 30.0% |
| !!! | TTGTAGTTATTTTGGTGTCT+TGG | + | chr3.3:79361761-79361780 | MS.gene30987:intron | 30.0% |
| AAAGAAACATTGCCACAAAC+GGG | - | chr3.3:79361672-79361691 | None:intergenic | 35.0% | |
| AGAAGAATTGAAATGGATGC+TGG | + | chr3.3:79362498-79362517 | MS.gene30987:intron | 35.0% | |
| ATGACAATTGCTAAGCAGTT+AGG | - | chr3.3:79362141-79362160 | None:intergenic | 35.0% | |
| ATGGTATCTCTATTGTCAAG+TGG | - | chr3.3:79362385-79362404 | None:intergenic | 35.0% | |
| CGGAACAAGAAGAATTGAAA+TGG | + | chr3.3:79362491-79362510 | MS.gene30987:intron | 35.0% | |
| GCTATCTGTTAAGGTAATAC+TGG | - | chr3.3:79362355-79362374 | None:intergenic | 35.0% | |
| ! | ATAGCATCTAAAGTCCAGAA+TGG | - | chr3.3:79363120-79363139 | None:intergenic | 35.0% |
| ! | GATTAAGCTTGATAGCTTGA+TGG | - | chr3.3:79360723-79360742 | None:intergenic | 35.0% |
| ! | GTACATTGAATCTTGATTCG+TGG | + | chr3.3:79361493-79361512 | MS.gene30987:intron | 35.0% |
| ! | TTGAATTTTGTGAGGTGCAT+GGG | - | chr3.3:79360753-79360772 | None:intergenic | 35.0% |
| ! | TTTCAAGTGCCATTAAACGA+TGG | - | chr3.3:79362404-79362423 | None:intergenic | 35.0% |
| ! | TTTGAATTTTGTGAGGTGCA+TGG | - | chr3.3:79360754-79360773 | None:intergenic | 35.0% |
| !! | CTTGAAATAGAGGCATCAAA+AGG | + | chr3.3:79362417-79362436 | MS.gene30987:intron | 35.0% |
| !! | TGATTAAGTTGGAGTCTTCA+CGG | + | chr3.3:79362471-79362490 | MS.gene30987:intron | 35.0% |
| !! | TTTCACTAGCTTGCAGATTT+TGG | + | chr3.3:79362052-79362071 | MS.gene30987:intron | 35.0% |
| !!! | TTTTGGCTTACTAGGTGTAT+AGG | + | chr3.3:79362684-79362703 | MS.gene30987:intron | 35.0% |
| AAATTTGTGGAGCCTGATGA+TGG | - | chr3.3:79361728-79361747 | None:intergenic | 40.0% | |
| AACAATCGTGCTTCTTCTCA+GGG | + | chr3.3:79361243-79361262 | MS.gene30987:CDS | 40.0% | |
| AATAAGCTGACGTACTTTCC+AGG | + | chr3.3:79363288-79363307 | MS.gene30987:CDS | 40.0% | |
| ACAAACGGGCAACTTTCATA+AGG | - | chr3.3:79361658-79361677 | None:intergenic | 40.0% | |
| ACCAATTTGTGAAGGAATGC+CGG | - | chr3.3:79361874-79361893 | None:intergenic | 40.0% | |
| ACCTTGACATCAGAACACTT+GGG | - | chr3.3:79361037-79361056 | None:intergenic | 40.0% | |
| ATATAAGAGGGCTGAGTACA+CGG | + | chr3.3:79360850-79360869 | MS.gene30987:CDS | 40.0% | |
| ATCGGAACTCGAACAACAAT+TGG | - | chr3.3:79360998-79361017 | None:intergenic | 40.0% | |
| ATGCTGTTAAAGCAGTAGCA+AGG | - | chr3.3:79363251-79363270 | None:intergenic | 40.0% | |
| ATGGATCGATTAGCAGATCT+AGG | - | chr3.3:79363321-79363340 | None:intergenic | 40.0% | |
| CCACCATAACCAATTTGTGA+AGG | - | chr3.3:79361882-79361901 | None:intergenic | 40.0% | |
| CCTTCACAAATTGGTTATGG+TGG | + | chr3.3:79361879-79361898 | MS.gene30987:intron | 40.0% | |
| CTTTAGATGCTATGAAGCGT+CGG | + | chr3.3:79363127-79363146 | MS.gene30987:intron | 40.0% | |
| GGATCTTCTGTAGGAACAAA+TGG | - | chr3.3:79363201-79363220 | None:intergenic | 40.0% | |
| GGTTCTTGAGCTATCTGTTA+AGG | - | chr3.3:79362364-79362383 | None:intergenic | 40.0% | |
| GTTGCAATGGCGTGTTTATA+TGG | - | chr3.3:79361833-79361852 | None:intergenic | 40.0% | |
| TAAGCAGTTAGGCGTTTGAT+CGG | - | chr3.3:79362130-79362149 | None:intergenic | 40.0% | |
| TGCTACTGCTTTAACAGCAT+TGG | + | chr3.3:79363251-79363270 | MS.gene30987:CDS | 40.0% | |
| TGCTGTTAAAGCAGTAGCAA+GGG | - | chr3.3:79363250-79363269 | None:intergenic | 40.0% | |
| TGGTACAGAAGAAAAGGAGA+AGG | + | chr3.3:79363169-79363188 | MS.gene30987:CDS | 40.0% | |
| TTATGAAAGTTGCCCGTTTG+TGG | + | chr3.3:79361657-79361676 | MS.gene30987:intron | 40.0% | |
| TTCCTACAGAAGATCCTGAT+AGG | + | chr3.3:79363205-79363224 | MS.gene30987:CDS | 40.0% | |
| ! | ATTGTTGTTCGAGTTCCGAT+TGG | + | chr3.3:79360998-79361017 | MS.gene30987:CDS | 40.0% |
| ! | CTTGATAGCTTGATGGAAGA+CGG | - | chr3.3:79360716-79360735 | None:intergenic | 40.0% |
| !! | TGTTTGATTTGAAGGCAAGG+AGG | + | chr3.3:79362103-79362122 | MS.gene30987:intron | 40.0% |
| !! | TTGGCTTTGTGAAAGTGATG+TGG | + | chr3.3:79361433-79361452 | MS.gene30987:intron | 40.0% |
| AAACACGCCATTGCAACCTA+AGG | + | chr3.3:79361836-79361855 | MS.gene30987:intron | 45.0% | |
| AAGCAGTTAGGCGTTTGATC+GGG | - | chr3.3:79362129-79362148 | None:intergenic | 45.0% | |
| ATCGCAAAAATAGGAGGCCA+TGG | - | chr3.3:79361920-79361939 | None:intergenic | 45.0% | |
| ATTTGCTTCAGCCTCCTATC+AGG | - | chr3.3:79363222-79363241 | None:intergenic | 45.0% | |
| CCTTGACATCAGAACACTTG+GGG | - | chr3.3:79361036-79361055 | None:intergenic | 45.0% | |
| CGTAGGGATTCTCTTGATTC+CGG | + | chr3.3:79361219-79361238 | MS.gene30987:CDS | 45.0% | |
| CTACAGAAGATCCTGATAGG+AGG | + | chr3.3:79363208-79363227 | MS.gene30987:CDS | 45.0% | |
| CTCCTATCAGGATCTTCTGT+AGG | - | chr3.3:79363210-79363229 | None:intergenic | 45.0% | |
| CTCTGGTGGTACAGAAGAAA+AGG | + | chr3.3:79363163-79363182 | MS.gene30987:CDS | 45.0% | |
| GAACAATCGTGCTTCTTCTC+AGG | + | chr3.3:79361242-79361261 | MS.gene30987:CDS | 45.0% | |
| GACCTTGACATCAGAACACT+TGG | - | chr3.3:79361038-79361057 | None:intergenic | 45.0% | |
| GAGTTGAGTAATGCTGTCGA+TGG | + | chr3.3:79361789-79361808 | MS.gene30987:intron | 45.0% | |
| GCAATGGCGTGTTTATATGG+CGG | - | chr3.3:79361830-79361849 | None:intergenic | 45.0% | |
| GTAGGGATTCTCTTGATTCC+GGG | + | chr3.3:79361220-79361239 | MS.gene30987:CDS | 45.0% | |
| TCACATAAAAGCAGCTCCTC+CGG | - | chr3.3:79360938-79360957 | None:intergenic | 45.0% | |
| TGATAGGAGGCTGAAGCAAA+TGG | + | chr3.3:79363221-79363240 | MS.gene30987:CDS | 45.0% | |
| TTGAGTAATGCTGTCGATGG+CGG | + | chr3.3:79361792-79361811 | MS.gene30987:intron | 45.0% | |
| ! | AGAAGAAGCACGATTGTTCC+CGG | - | chr3.3:79361241-79361260 | None:intergenic | 45.0% |
| ! | CATGCCACCGTTCTCTAAAA+TGG | - | chr3.3:79363340-79363359 | None:intergenic | 45.0% |
| ! | CTTTTCTTCTGTACCACCAG+AGG | - | chr3.3:79363165-79363184 | None:intergenic | 45.0% |
| ! | TTGTGGGGATTCTAGCTATG+TGG | + | chr3.3:79362227-79362246 | MS.gene30987:intron | 45.0% |
| !! | CGATCCATTTTAGAGAACGG+TGG | + | chr3.3:79363333-79363352 | MS.gene30987:CDS | 45.0% |
| !! | CTTGCAGATTTTGGTGCAAC+TGG | + | chr3.3:79362061-79362080 | MS.gene30987:intron | 45.0% |
| ACCTCCTGTGTGAGCAATGT+GGG | + | chr3.3:79360900-79360919 | MS.gene30987:CDS | 50.0% | |
| CCATTTCTTCGGGCTTCGTA+GGG | + | chr3.3:79361203-79361222 | MS.gene30987:CDS | 50.0% | |
| CCCCAAGTGTTCTGATGTCA+AGG | + | chr3.3:79361033-79361052 | MS.gene30987:CDS | 50.0% | |
| GAACACTTGGGGCAAATCCA+CGG | - | chr3.3:79361025-79361044 | None:intergenic | 50.0% | |
| GCAAAAATAGGAGGCCATGG+CGG | - | chr3.3:79361917-79361936 | None:intergenic | 50.0% | |
| GCCGGCATTCCTTCACAAAT+TGG | + | chr3.3:79361870-79361889 | MS.gene30987:intron | 50.0% | |
| GCTGACGTACTTTCCAGGAA+TGG | + | chr3.3:79363293-79363312 | MS.gene30987:CDS | 50.0% | |
| GGTTACCGAAAAATCCGCCA+TGG | + | chr3.3:79361900-79361919 | MS.gene30987:intron | 50.0% | |
| TCCATTTCTTCGGGCTTCGT+AGG | + | chr3.3:79361202-79361221 | MS.gene30987:CDS | 50.0% | |
| TGTGAAGGAATGCCGGCAAA+TGG | - | chr3.3:79361867-79361886 | None:intergenic | 50.0% | |
| TTCTGTACCACCAGAGGTCT+TGG | - | chr3.3:79363159-79363178 | None:intergenic | 50.0% | |
| TTTAGAGAACGGTGGCATGC+AGG | + | chr3.3:79363341-79363360 | MS.gene30987:CDS | 50.0% | |
| ! | TTTTGTGAGGTGCATGGGTG+CGG | - | chr3.3:79360748-79360767 | None:intergenic | 50.0% |
| ACCCACATTGCTCACACAGG+AGG | - | chr3.3:79360904-79360923 | None:intergenic | 55.0% | |
| AGCTTGATGGAAGACGGCGA+TGG | - | chr3.3:79360710-79360729 | None:intergenic | 55.0% | |
| ATGTGGGTCCGGTGAACAAC+CGG | + | chr3.3:79360916-79360935 | MS.gene30987:CDS | 55.0% | |
| CCCTACGAAGCCCGAAGAAA+TGG | - | chr3.3:79361206-79361225 | None:intergenic | 55.0% | |
| CTGTGTGAGCAATGTGGGTC+CGG | + | chr3.3:79360905-79360924 | MS.gene30987:CDS | 55.0% | |
| GAAGGAATGCCGGCAAATGG+TGG | - | chr3.3:79361864-79361883 | None:intergenic | 55.0% | |
| GACCTCCTGTGTGAGCAATG+TGG | + | chr3.3:79360899-79360918 | MS.gene30987:CDS | 55.0% | |
| GCAGATCTAGGAGCCATTCC+TGG | - | chr3.3:79363309-79363328 | None:intergenic | 55.0% | |
| GCTGAGGAGGAGGAGGATTA+CGG | + | chr3.3:79360875-79360894 | MS.gene30987:CDS | 55.0% | |
| GGGCAAATCCACGGACCAAT+CGG | - | chr3.3:79361016-79361035 | None:intergenic | 55.0% | |
| TAAGAGGGCTGAGTACACGG+TGG | + | chr3.3:79360853-79360872 | MS.gene30987:CDS | 55.0% | |
| ! | TTCGAGTTCCGATTGGTCCG+TGG | + | chr3.3:79361005-79361024 | MS.gene30987:CDS | 55.0% |
| !! | GTAATGCTGTCGATGGCGGA+AGG | + | chr3.3:79361796-79361815 | MS.gene30987:intron | 55.0% |
| !!! | GGAGGCCATGGCGGATTTTT+CGG | - | chr3.3:79361908-79361927 | None:intergenic | 55.0% |
| ATTCCCCTCCTCCTCCTCGA+AGG | - | chr3.3:79360807-79360826 | None:intergenic | 60.0% | |
| CAGCTCCTCCGGTTGTTCAC+CGG | - | chr3.3:79360927-79360946 | None:intergenic | 60.0% | |
| CGGACCCACATTGCTCACAC+AGG | - | chr3.3:79360907-79360926 | None:intergenic | 60.0% | |
| CTCCTCGAAGGTGGAGGAAG+AGG | - | chr3.3:79360795-79360814 | None:intergenic | 60.0% | |
| CTCCTCTTCCTCCACCTTCG+AGG | + | chr3.3:79360790-79360809 | MS.gene30987:CDS | 60.0% | |
| CTCGAAGGTGGAGGAAGAGG+AGG | - | chr3.3:79360792-79360811 | None:intergenic | 60.0% | |
| CTCTTCCTCCACCTTCGAGG+AGG | + | chr3.3:79360793-79360812 | MS.gene30987:CDS | 60.0% | |
| GAGACGTCCAAGACCTCTGG+TGG | + | chr3.3:79363149-79363168 | MS.gene30987:CDS | 60.0% | |
| TCCACCTTCGAGGAGGAGGA+GGG | + | chr3.3:79360800-79360819 | MS.gene30987:CDS | 60.0% | |
| TCGGAGACGTCCAAGACCTC+TGG | + | chr3.3:79363146-79363165 | MS.gene30987:CDS | 60.0% | |
| TGAGTACACGGTGGCTGAGG+AGG | + | chr3.3:79360862-79360881 | MS.gene30987:CDS | 60.0% | |
| TTCCTCCACCTTCGAGGAGG+AGG | + | chr3.3:79360796-79360815 | MS.gene30987:CDS | 60.0% | |
| ! | CCTAAGGCGCCACCATTTGC+CGG | + | chr3.3:79361852-79361871 | MS.gene30987:intron | 60.0% |
| ! | GGTGGCGCCTTAGGTTGCAA+TGG | - | chr3.3:79361846-79361865 | None:intergenic | 60.0% |
| CCACCTTCGAGGAGGAGGAG+GGG | + | chr3.3:79360801-79360820 | MS.gene30987:CDS | 65.0% | |
| CTCCACCTTCGAGGAGGAGG+AGG | + | chr3.3:79360799-79360818 | MS.gene30987:CDS | 65.0% | |
| CTCCTCCTCCTCGAAGGTGG+AGG | - | chr3.3:79360801-79360820 | None:intergenic | 65.0% | |
| GAAGACGGCGATGGAGACGC+CGG | - | chr3.3:79360701-79360720 | None:intergenic | 65.0% | |
| GGCTGAGTACACGGTGGCTG+AGG | + | chr3.3:79360859-79360878 | MS.gene30987:CDS | 65.0% | |
| GTACACGGTGGCTGAGGAGG+AGG | + | chr3.3:79360865-79360884 | MS.gene30987:CDS | 65.0% | |
| TGGGTCCGGTGAACAACCGG+AGG | + | chr3.3:79360919-79360938 | MS.gene30987:CDS | 65.0% | |
| TGTGAGGTGCATGGGTGCGG+CGG | - | chr3.3:79360745-79360764 | None:intergenic | 65.0% | |
| ! | CCGGCAAATGGTGGCGCCTT+AGG | - | chr3.3:79361855-79361874 | None:intergenic | 65.0% |
| CACGGTGGCTGAGGAGGAGG+AGG | + | chr3.3:79360868-79360887 | MS.gene30987:CDS | 70.0% | |
| CCCCTCCTCCTCCTCGAAGG+TGG | - | chr3.3:79360804-79360823 | None:intergenic | 70.0% | |
| GGAGACGCCGGAGCTGTCGC+CGG | - | chr3.3:79360689-79360708 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79360680 | 79363377 | 79360680 | ID=MS.gene30987 |
| chr3.3 | mRNA | 79360680 | 79363377 | 79360680 | ID=MS.gene30987.t1;Parent=MS.gene30987 |
| chr3.3 | exon | 79360680 | 79361070 | 79360680 | ID=MS.gene30987.t1.exon1;Parent=MS.gene30987.t1 |
| chr3.3 | CDS | 79360680 | 79361070 | 79360680 | ID=cds.MS.gene30987.t1;Parent=MS.gene30987.t1 |
| chr3.3 | exon | 79361181 | 79361264 | 79361181 | ID=MS.gene30987.t1.exon2;Parent=MS.gene30987.t1 |
| chr3.3 | CDS | 79361181 | 79361264 | 79361181 | ID=cds.MS.gene30987.t1;Parent=MS.gene30987.t1 |
| chr3.3 | exon | 79363133 | 79363377 | 79363133 | ID=MS.gene30987.t1.exon3;Parent=MS.gene30987.t1 |
| chr3.3 | CDS | 79363133 | 79363377 | 79363133 | ID=cds.MS.gene30987.t1;Parent=MS.gene30987.t1 |
| Gene Sequence |
| Protein sequence |
