Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31052.t1 | XP_003602464.1 | 94.2 | 208 | 9 | 1 | 1 | 205 | 30 | 237 | 1.20E-73 | 286.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31052.t1 | Q8L5T5 | 88.7 | 124 | 14 | 0 | 3 | 126 | 30 | 153 | 1.2e-56 | 221.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31052.t1 | G7J9S3 | 94.2 | 208 | 9 | 1 | 1 | 205 | 30 | 237 | 8.7e-74 | 286.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31052.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31052.t1 | MTR_3g094690 | 96.154 | 208 | 5 | 1 | 1 | 205 | 30 | 237 | 7.70e-146 | 405 |
MS.gene31052.t1 | MTR_3g094690 | 95.673 | 208 | 5 | 2 | 1 | 205 | 30 | 236 | 3.73e-143 | 398 |
MS.gene31052.t1 | MTR_5g083960 | 67.488 | 203 | 34 | 5 | 3 | 204 | 24 | 195 | 4.00e-84 | 248 |
MS.gene31052.t1 | MTR_5g075020 | 80.153 | 131 | 24 | 1 | 1 | 129 | 24 | 154 | 3.21e-67 | 206 |
MS.gene31052.t1 | MTR_5g075020 | 80.153 | 131 | 24 | 1 | 1 | 129 | 28 | 158 | 5.39e-67 | 205 |
MS.gene31052.t1 | MTR_4g083680 | 60.345 | 116 | 46 | 0 | 17 | 132 | 14 | 129 | 6.43e-49 | 157 |
MS.gene31052.t1 | MTR_5g083230 | 69.903 | 103 | 31 | 0 | 17 | 119 | 5 | 107 | 1.28e-48 | 156 |
MS.gene31052.t1 | MTR_2g068760 | 61.607 | 112 | 43 | 0 | 14 | 125 | 9 | 120 | 2.61e-48 | 155 |
MS.gene31052.t1 | MTR_3g071590 | 63.393 | 112 | 41 | 0 | 14 | 125 | 4 | 115 | 4.85e-48 | 155 |
MS.gene31052.t1 | MTR_4g105170 | 61.468 | 109 | 42 | 0 | 17 | 125 | 10 | 118 | 5.59e-45 | 148 |
MS.gene31052.t1 | MTR_7g033800 | 61.905 | 105 | 40 | 0 | 17 | 121 | 10 | 114 | 1.07e-44 | 147 |
MS.gene31052.t1 | MTR_3g031660 | 57.759 | 116 | 49 | 0 | 17 | 132 | 6 | 121 | 1.22e-44 | 147 |
MS.gene31052.t1 | MTR_3g077240 | 60.550 | 109 | 43 | 0 | 17 | 125 | 9 | 117 | 4.33e-44 | 145 |
MS.gene31052.t1 | MTR_2g093310 | 55.357 | 112 | 50 | 0 | 15 | 126 | 30 | 141 | 3.05e-43 | 144 |
MS.gene31052.t1 | MTR_6g005070 | 53.913 | 115 | 53 | 0 | 17 | 131 | 8 | 122 | 3.36e-43 | 142 |
MS.gene31052.t1 | MTR_3g073690 | 60.952 | 105 | 41 | 0 | 17 | 121 | 8 | 112 | 1.03e-42 | 142 |
MS.gene31052.t1 | MTR_6g005080 | 52.174 | 115 | 55 | 0 | 17 | 131 | 9 | 123 | 6.16e-42 | 139 |
MS.gene31052.t1 | MTR_5g017950 | 60.000 | 105 | 42 | 0 | 17 | 121 | 7 | 111 | 1.99e-41 | 142 |
MS.gene31052.t1 | MTR_3g452660 | 57.009 | 107 | 46 | 0 | 17 | 123 | 6 | 112 | 7.48e-41 | 140 |
MS.gene31052.t1 | MTR_4g060950 | 50.820 | 122 | 59 | 1 | 16 | 136 | 22 | 143 | 1.59e-40 | 136 |
MS.gene31052.t1 | MTR_7g074990 | 63.725 | 102 | 36 | 1 | 18 | 118 | 20 | 121 | 2.16e-40 | 137 |
MS.gene31052.t1 | MTR_1g095850 | 46.809 | 141 | 74 | 1 | 19 | 159 | 73 | 212 | 1.73e-39 | 135 |
MS.gene31052.t1 | MTR_3g071420 | 60.825 | 97 | 38 | 0 | 19 | 115 | 15 | 111 | 4.85e-39 | 132 |
MS.gene31052.t1 | MTR_5g083010 | 56.863 | 102 | 44 | 0 | 19 | 120 | 12 | 113 | 5.01e-38 | 130 |
MS.gene31052.t1 | MTR_8g040900 | 56.604 | 106 | 46 | 0 | 17 | 122 | 6 | 111 | 3.74e-36 | 126 |
MS.gene31052.t1 | MTR_7g028905 | 52.381 | 105 | 50 | 0 | 19 | 123 | 6 | 110 | 7.53e-36 | 122 |
MS.gene31052.t1 | MTR_6g027710 | 51.786 | 112 | 53 | 1 | 16 | 126 | 38 | 149 | 9.91e-36 | 125 |
MS.gene31052.t1 | MTR_8g036085 | 55.140 | 107 | 47 | 1 | 18 | 123 | 23 | 129 | 2.41e-35 | 124 |
MS.gene31052.t1 | MTR_7g096530 | 53.333 | 105 | 48 | 1 | 15 | 118 | 11 | 115 | 3.28e-35 | 124 |
MS.gene31052.t1 | MTR_1g070220 | 53.153 | 111 | 50 | 2 | 18 | 126 | 15 | 125 | 7.43e-35 | 122 |
MS.gene31052.t1 | MTR_8g036105 | 56.863 | 102 | 43 | 1 | 18 | 118 | 18 | 119 | 6.17e-34 | 120 |
MS.gene31052.t1 | MTR_5g093010 | 50.943 | 106 | 52 | 0 | 19 | 124 | 6 | 111 | 8.11e-34 | 118 |
MS.gene31052.t1 | MTR_7g096610 | 55.446 | 101 | 42 | 2 | 17 | 115 | 7 | 106 | 4.58e-33 | 118 |
MS.gene31052.t1 | MTR_1g070205 | 50.407 | 123 | 51 | 3 | 18 | 138 | 12 | 126 | 6.39e-33 | 118 |
MS.gene31052.t1 | MTR_5g080470 | 39.634 | 164 | 93 | 4 | 17 | 178 | 6 | 165 | 2.06e-32 | 115 |
MS.gene31052.t1 | MTR_8g079660 | 50.000 | 106 | 53 | 0 | 16 | 121 | 6 | 111 | 9.48e-32 | 116 |
MS.gene31052.t1 | MTR_6g027700 | 44.554 | 101 | 55 | 1 | 18 | 117 | 7 | 107 | 2.69e-28 | 105 |
MS.gene31052.t1 | MTR_8g079580 | 48.598 | 107 | 54 | 1 | 16 | 121 | 6 | 112 | 3.19e-28 | 106 |
MS.gene31052.t1 | MTR_7g075230 | 50.962 | 104 | 48 | 2 | 18 | 118 | 12 | 115 | 4.51e-28 | 105 |
MS.gene31052.t1 | MTR_8g079620 | 44.340 | 106 | 59 | 0 | 16 | 121 | 6 | 111 | 2.88e-27 | 103 |
MS.gene31052.t1 | MTR_6g011250 | 41.053 | 95 | 55 | 1 | 19 | 112 | 10 | 104 | 1.78e-24 | 95.5 |
MS.gene31052.t1 | MTR_6g011230 | 38.235 | 102 | 63 | 0 | 14 | 115 | 7 | 108 | 2.10e-23 | 92.8 |
MS.gene31052.t1 | MTR_6g011200 | 37.383 | 107 | 63 | 2 | 13 | 115 | 1 | 107 | 8.98e-23 | 92.4 |
MS.gene31052.t1 | MTR_4g107450 | 39.423 | 104 | 63 | 0 | 15 | 118 | 7 | 110 | 1.76e-22 | 92.8 |
MS.gene31052.t1 | MTR_2g100020 | 40.952 | 105 | 60 | 2 | 15 | 118 | 16 | 119 | 1.74e-21 | 89.7 |
MS.gene31052.t1 | MTR_8g017090 | 35.780 | 109 | 68 | 2 | 15 | 122 | 9 | 116 | 2.00e-20 | 87.0 |
MS.gene31052.t1 | MTR_5g085390 | 37.273 | 110 | 61 | 3 | 13 | 114 | 1 | 110 | 1.11e-19 | 84.0 |
MS.gene31052.t1 | MTR_4g099230 | 38.614 | 101 | 57 | 2 | 19 | 114 | 3 | 103 | 3.04e-19 | 80.9 |
MS.gene31052.t1 | MTR_4g088035 | 34.091 | 88 | 58 | 0 | 17 | 104 | 5 | 92 | 2.60e-15 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31052.t1 | AT2G40470 | 66.505 | 206 | 55 | 3 | 3 | 205 | 5 | 199 | 3.94e-74 | 222 |
MS.gene31052.t1 | AT2G40470 | 66.505 | 206 | 55 | 3 | 3 | 205 | 30 | 224 | 4.00e-74 | 223 |
MS.gene31052.t1 | AT2G30340 | 77.863 | 131 | 27 | 2 | 1 | 129 | 33 | 163 | 4.11e-72 | 219 |
MS.gene31052.t1 | AT2G30340 | 77.863 | 131 | 27 | 2 | 1 | 129 | 34 | 164 | 4.89e-72 | 219 |
MS.gene31052.t1 | AT2G30130 | 61.864 | 118 | 41 | 1 | 7 | 124 | 1 | 114 | 3.47e-47 | 154 |
MS.gene31052.t1 | AT1G31320 | 63.717 | 113 | 41 | 0 | 17 | 129 | 12 | 124 | 2.99e-45 | 148 |
MS.gene31052.t1 | AT3G27650 | 58.120 | 117 | 49 | 0 | 5 | 121 | 26 | 142 | 9.03e-45 | 146 |
MS.gene31052.t1 | AT1G07900 | 45.223 | 157 | 80 | 1 | 15 | 165 | 30 | 186 | 2.30e-43 | 144 |
MS.gene31052.t1 | AT1G16530 | 56.604 | 106 | 45 | 1 | 15 | 119 | 11 | 116 | 7.01e-43 | 142 |
MS.gene31052.t1 | AT2G28500 | 50.794 | 126 | 62 | 0 | 15 | 140 | 52 | 177 | 7.97e-43 | 144 |
MS.gene31052.t1 | AT5G63090 | 58.559 | 111 | 46 | 0 | 17 | 127 | 10 | 120 | 9.03e-43 | 142 |
MS.gene31052.t1 | AT5G63090 | 58.559 | 111 | 46 | 0 | 17 | 127 | 10 | 120 | 9.03e-43 | 142 |
MS.gene31052.t1 | AT5G63090 | 58.559 | 111 | 46 | 0 | 17 | 127 | 10 | 120 | 9.03e-43 | 142 |
MS.gene31052.t1 | AT5G63090 | 58.559 | 111 | 46 | 0 | 17 | 127 | 10 | 120 | 9.03e-43 | 142 |
MS.gene31052.t1 | AT5G66870 | 60.000 | 105 | 42 | 0 | 17 | 121 | 6 | 110 | 2.51e-41 | 142 |
MS.gene31052.t1 | AT1G65620 | 56.000 | 125 | 54 | 1 | 14 | 137 | 5 | 129 | 9.99e-40 | 135 |
MS.gene31052.t1 | AT1G65620 | 56.000 | 125 | 54 | 1 | 14 | 137 | 5 | 129 | 9.99e-40 | 135 |
MS.gene31052.t1 | AT1G65620 | 56.000 | 125 | 54 | 1 | 14 | 137 | 5 | 129 | 9.99e-40 | 135 |
MS.gene31052.t1 | AT1G65620 | 56.000 | 125 | 54 | 1 | 14 | 137 | 5 | 129 | 9.99e-40 | 135 |
MS.gene31052.t1 | AT1G65620 | 56.000 | 125 | 54 | 1 | 14 | 137 | 5 | 129 | 9.99e-40 | 135 |
MS.gene31052.t1 | AT2G23660 | 57.143 | 105 | 45 | 0 | 17 | 121 | 4 | 108 | 2.49e-39 | 137 |
MS.gene31052.t1 | AT2G23660 | 57.143 | 105 | 45 | 0 | 17 | 121 | 4 | 108 | 2.49e-39 | 137 |
MS.gene31052.t1 | AT2G23660 | 57.143 | 105 | 45 | 0 | 17 | 121 | 4 | 108 | 2.49e-39 | 137 |
MS.gene31052.t1 | AT3G26660 | 56.000 | 100 | 44 | 0 | 19 | 118 | 6 | 105 | 7.42e-38 | 127 |
MS.gene31052.t1 | AT3G26620 | 56.000 | 100 | 44 | 0 | 19 | 118 | 6 | 105 | 7.58e-38 | 127 |
MS.gene31052.t1 | AT3G11090 | 57.282 | 103 | 44 | 0 | 19 | 121 | 12 | 114 | 1.57e-37 | 128 |
MS.gene31052.t1 | AT2G42430 | 47.154 | 123 | 64 | 1 | 8 | 129 | 5 | 127 | 8.88e-36 | 126 |
MS.gene31052.t1 | AT4G00210 | 56.863 | 102 | 43 | 1 | 18 | 118 | 11 | 112 | 5.56e-35 | 123 |
MS.gene31052.t1 | AT3G03760 | 51.852 | 108 | 51 | 1 | 17 | 123 | 50 | 157 | 4.13e-34 | 122 |
MS.gene31052.t1 | AT3G58190 | 57.000 | 100 | 40 | 2 | 18 | 115 | 11 | 109 | 4.15e-34 | 121 |
MS.gene31052.t1 | AT2G31310 | 51.961 | 102 | 48 | 1 | 17 | 117 | 6 | 107 | 5.06e-33 | 117 |
MS.gene31052.t1 | AT4G00220 | 54.808 | 104 | 46 | 1 | 21 | 123 | 20 | 123 | 1.48e-32 | 117 |
MS.gene31052.t1 | AT5G06080 | 44.828 | 145 | 72 | 4 | 17 | 160 | 6 | 143 | 4.19e-32 | 114 |
MS.gene31052.t1 | AT2G45420 | 50.962 | 104 | 50 | 1 | 21 | 123 | 40 | 143 | 2.37e-31 | 115 |
MS.gene31052.t1 | AT2G42440 | 50.495 | 101 | 47 | 2 | 17 | 115 | 6 | 105 | 1.90e-30 | 112 |
MS.gene31052.t1 | AT2G45410 | 55.435 | 92 | 40 | 1 | 21 | 111 | 19 | 110 | 3.43e-29 | 107 |
MS.gene31052.t1 | AT3G50510 | 41.905 | 105 | 61 | 0 | 17 | 121 | 11 | 115 | 1.15e-26 | 101 |
MS.gene31052.t1 | AT3G50510 | 41.905 | 105 | 61 | 0 | 17 | 121 | 11 | 115 | 1.15e-26 | 101 |
MS.gene31052.t1 | AT3G47870 | 37.037 | 108 | 68 | 0 | 15 | 122 | 33 | 140 | 7.41e-24 | 97.1 |
MS.gene31052.t1 | AT1G72980 | 42.308 | 104 | 60 | 0 | 15 | 118 | 10 | 113 | 1.25e-23 | 94.0 |
MS.gene31052.t1 | AT5G35900 | 37.255 | 102 | 64 | 0 | 17 | 118 | 4 | 105 | 3.40e-21 | 87.4 |
MS.gene31052.t1 | AT3G13850 | 33.962 | 106 | 70 | 0 | 19 | 124 | 37 | 142 | 1.43e-20 | 87.0 |
MS.gene31052.t1 | AT1G06280 | 42.529 | 87 | 50 | 0 | 19 | 105 | 25 | 111 | 7.32e-20 | 84.0 |
MS.gene31052.t1 | AT2G19820 | 33.333 | 96 | 63 | 1 | 18 | 112 | 12 | 107 | 1.02e-15 | 70.9 |
MS.gene31052.t1 | AT5G15060 | 35.526 | 76 | 47 | 1 | 16 | 89 | 15 | 90 | 3.65e-11 | 59.3 |
Find 46 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGATAATATTTCCTATTT+TGG | 0.135067 | 3.3:-78615408 | MS.gene31052:CDS |
CACAAGGGGTTATAGTATTT+AGG | 0.181231 | 3.3:+78616050 | None:intergenic |
AAATACTTAAATACAAATTA+AGG | 0.183471 | 3.3:-78615650 | MS.gene31052:CDS |
TGGTTCATGAGGAGAGAAAT+AGG | 0.287589 | 3.3:+78615976 | None:intergenic |
AGGCTAAGAGATCCAGTTTA+TGG | 0.306813 | 3.3:-78615747 | MS.gene31052:CDS |
ATCCCTCTGTTGAAAGTATA+TGG | 0.313628 | 3.3:+78615455 | None:intergenic |
ACAAGGGGTTATAGTATTTA+GGG | 0.313905 | 3.3:+78616051 | None:intergenic |
GGAGGTGGAGGCGGCGGCGG+TGG | 0.316051 | 3.3:+78615510 | None:intergenic |
GGTGGAGGCGGCGGCGGTGG+CGG | 0.317631 | 3.3:+78615513 | None:intergenic |
GTTATAGTATTTAGGGTTCC+TGG | 0.351578 | 3.3:+78616058 | None:intergenic |
ACTTGAAATTGTGCTATAGT+TGG | 0.363521 | 3.3:+78615431 | None:intergenic |
AGAGGAGGTGGAGGCGGCGG+CGG | 0.367601 | 3.3:+78615507 | None:intergenic |
GGAAGAGGAGGTGGAGGCGG+CGG | 0.373511 | 3.3:+78615504 | None:intergenic |
GCACCCATGCATCCATAAAC+TGG | 0.381798 | 3.3:+78615735 | None:intergenic |
GGAGAGAAATAGGGAGAAAA+GGG | 0.384566 | 3.3:+78615986 | None:intergenic |
GATGAATTAGAGGTTGTAGA+AGG | 0.385231 | 3.3:+78615483 | None:intergenic |
AGGAGAGAAATAGGGAGAAA+AGG | 0.419838 | 3.3:+78615985 | None:intergenic |
ACATCCACAGAGGAATTAGA+AGG | 0.421824 | 3.3:+78615549 | None:intergenic |
GTTGTAGAAGGAAGAGGAGG+TGG | 0.426747 | 3.3:+78615495 | None:intergenic |
TATGGAAGAAGATGAATTAG+AGG | 0.432320 | 3.3:+78615473 | None:intergenic |
GCAGAACTCAATCTATTAAG+AGG | 0.440766 | 3.3:-78615675 | MS.gene31052:CDS |
CTTGAAATTGTGCTATAGTT+GGG | 0.441064 | 3.3:+78615432 | None:intergenic |
GAAGGAAGAGGAGGTGGAGG+CGG | 0.445642 | 3.3:+78615501 | None:intergenic |
TTAGAGGTTGTAGAAGGAAG+AGG | 0.449707 | 3.3:+78615489 | None:intergenic |
AATTTCTGCATTGCAACAAC+AGG | 0.457176 | 3.3:-78615712 | MS.gene31052:CDS |
GTAGAAGGAAGAGGAGGTGG+AGG | 0.462652 | 3.3:+78615498 | None:intergenic |
ATGGGAAGAAGACATATGTT+AGG | 0.472989 | 3.3:-78616085 | MS.gene31052:CDS |
AATACTTAAATACAAATTAA+GGG | 0.483814 | 3.3:-78615649 | MS.gene31052:CDS |
GGTTCATGAGGAGAGAAATA+GGG | 0.492582 | 3.3:+78615977 | None:intergenic |
TTCCATATACTTTCAACAGA+GGG | 0.521455 | 3.3:-78615457 | MS.gene31052:CDS |
AGATCCAGTTTATGGATGCA+TGG | 0.526865 | 3.3:-78615739 | MS.gene31052:CDS |
ATTGCAAGTTGATGAGATGA+AGG | 0.553196 | 3.3:+78615576 | None:intergenic |
AATAGCTTACATGCTGCACA+AGG | 0.566069 | 3.3:+78616034 | None:intergenic |
GATCCAGTTTATGGATGCAT+GGG | 0.578062 | 3.3:-78615738 | MS.gene31052:CDS |
GAGGTTGTAGAAGGAAGAGG+AGG | 0.579801 | 3.3:+78615492 | None:intergenic |
GCAAACTTCTGTGGTTCATG+AGG | 0.583150 | 3.3:+78615965 | None:intergenic |
TGAACAGAAGCAAACTTCTG+TGG | 0.594520 | 3.3:+78615956 | None:intergenic |
TAGCTTACATGCTGCACAAG+GGG | 0.599040 | 3.3:+78616036 | None:intergenic |
ATAGTATTTAGGGTTCCTGG+TGG | 0.604329 | 3.3:+78616061 | None:intergenic |
CTTCCATATACTTTCAACAG+AGG | 0.625078 | 3.3:-78615458 | MS.gene31052:CDS |
AGACATATGTTAGGTCCACC+AGG | 0.627473 | 3.3:-78616076 | MS.gene31052:CDS |
GCTCCCTTCTAATTCCTCTG+TGG | 0.641688 | 3.3:-78615553 | MS.gene31052:CDS |
CATCCACAGAGGAATTAGAA+GGG | 0.657432 | 3.3:+78615550 | None:intergenic |
TTGTTTATGAAGCAAATGTG+AGG | 0.672469 | 3.3:-78615767 | MS.gene31052:CDS |
ATAGCTTACATGCTGCACAA+GGG | 0.680325 | 3.3:+78616035 | None:intergenic |
AGCAATAGAAACATCCACAG+AGG | 0.762696 | 3.3:+78615539 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATACTTAAATACAAATTA+AGG | - | chr3.3:78615839-78615858 | MS.gene31052:intron | 10.0% |
!! | AATACTTAAATACAAATTAA+GGG | - | chr3.3:78615840-78615859 | MS.gene31052:intron | 10.0% |
!!! | AATATATATAATGTTTTAGG+AGG | - | chr3.3:78615663-78615682 | MS.gene31052:CDS | 15.0% |
!!! | GATGATAATATTTCCTATTT+TGG | - | chr3.3:78616081-78616100 | MS.gene31052:CDS | 20.0% |
ACAAGGGGTTATAGTATTTA+GGG | + | chr3.3:78615441-78615460 | None:intergenic | 30.0% | |
ACTTGAAATTGTGCTATAGT+TGG | + | chr3.3:78616061-78616080 | None:intergenic | 30.0% | |
CTTGAAATTGTGCTATAGTT+GGG | + | chr3.3:78616060-78616079 | None:intergenic | 30.0% | |
TATGGAAGAAGATGAATTAG+AGG | + | chr3.3:78616019-78616038 | None:intergenic | 30.0% | |
TTCCATATACTTTCAACAGA+GGG | - | chr3.3:78616032-78616051 | MS.gene31052:CDS | 30.0% | |
TTGTTTATGAAGCAAATGTG+AGG | - | chr3.3:78615722-78615741 | MS.gene31052:CDS | 30.0% | |
AATTTCTGCATTGCAACAAC+AGG | - | chr3.3:78615777-78615796 | MS.gene31052:CDS | 35.0% | |
ATGGGAAGAAGACATATGTT+AGG | - | chr3.3:78615404-78615423 | MS.gene31052:CDS | 35.0% | |
CAACGTCTCAAAAATGCTAA+TGG | - | chr3.3:78615574-78615593 | MS.gene31052:CDS | 35.0% | |
CACAAGGGGTTATAGTATTT+AGG | + | chr3.3:78615442-78615461 | None:intergenic | 35.0% | |
CTTCCATATACTTTCAACAG+AGG | - | chr3.3:78616031-78616050 | MS.gene31052:CDS | 35.0% | |
GATGAATTAGAGGTTGTAGA+AGG | + | chr3.3:78616009-78616028 | None:intergenic | 35.0% | |
GCAGAACTCAATCTATTAAG+AGG | - | chr3.3:78615814-78615833 | MS.gene31052:intron | 35.0% | |
! | ATCCCTCTGTTGAAAGTATA+TGG | + | chr3.3:78616037-78616056 | None:intergenic | 35.0% |
! | GCTTCTGTTCACAAAGTTTT+TGG | - | chr3.3:78615545-78615564 | MS.gene31052:CDS | 35.0% |
! | GTTATAGTATTTAGGGTTCC+TGG | + | chr3.3:78615434-78615453 | None:intergenic | 35.0% |
!! | ATTGCAAGTTGATGAGATGA+AGG | + | chr3.3:78615916-78615935 | None:intergenic | 35.0% |
AATAGCTTACATGCTGCACA+AGG | + | chr3.3:78615458-78615477 | None:intergenic | 40.0% | |
ACATCCACAGAGGAATTAGA+AGG | + | chr3.3:78615943-78615962 | None:intergenic | 40.0% | |
AGATCCAGTTTATGGATGCA+TGG | - | chr3.3:78615750-78615769 | MS.gene31052:CDS | 40.0% | |
AGCAATAGAAACATCCACAG+AGG | + | chr3.3:78615953-78615972 | None:intergenic | 40.0% | |
AGGAGAGAAATAGGGAGAAA+AGG | + | chr3.3:78615507-78615526 | None:intergenic | 40.0% | |
AGGCTAAGAGATCCAGTTTA+TGG | - | chr3.3:78615742-78615761 | MS.gene31052:CDS | 40.0% | |
ATAGCTTACATGCTGCACAA+GGG | + | chr3.3:78615457-78615476 | None:intergenic | 40.0% | |
CATCCACAGAGGAATTAGAA+GGG | + | chr3.3:78615942-78615961 | None:intergenic | 40.0% | |
GATCCAGTTTATGGATGCAT+GGG | - | chr3.3:78615751-78615770 | MS.gene31052:CDS | 40.0% | |
GGAGAGAAATAGGGAGAAAA+GGG | + | chr3.3:78615506-78615525 | None:intergenic | 40.0% | |
GGTTCATGAGGAGAGAAATA+GGG | + | chr3.3:78615515-78615534 | None:intergenic | 40.0% | |
TGAACAGAAGCAAACTTCTG+TGG | + | chr3.3:78615536-78615555 | None:intergenic | 40.0% | |
TGGTTCATGAGGAGAGAAAT+AGG | + | chr3.3:78615516-78615535 | None:intergenic | 40.0% | |
TTAGAGGTTGTAGAAGGAAG+AGG | + | chr3.3:78616003-78616022 | None:intergenic | 40.0% | |
! | ATAGTATTTAGGGTTCCTGG+TGG | + | chr3.3:78615431-78615450 | None:intergenic | 40.0% |
!!! | TAGCATTTTTGAGACGTTGC+TGG | + | chr3.3:78615573-78615592 | None:intergenic | 40.0% |
AGACATATGTTAGGTCCACC+AGG | - | chr3.3:78615413-78615432 | MS.gene31052:CDS | 45.0% | |
GCAAACTTCTGTGGTTCATG+AGG | + | chr3.3:78615527-78615546 | None:intergenic | 45.0% | |
TAGCTTACATGCTGCACAAG+GGG | + | chr3.3:78615456-78615475 | None:intergenic | 45.0% | |
!!! | AATAATATATATAATGTTTT+AGG | - | chr3.3:78615660-78615679 | MS.gene31052:CDS | 5.0% |
GAGGTTGTAGAAGGAAGAGG+AGG | + | chr3.3:78616000-78616019 | None:intergenic | 50.0% | |
GCACCCATGCATCCATAAAC+TGG | + | chr3.3:78615757-78615776 | None:intergenic | 50.0% | |
GCTCCCTTCTAATTCCTCTG+TGG | - | chr3.3:78615936-78615955 | MS.gene31052:CDS | 50.0% | |
GTTGTAGAAGGAAGAGGAGG+TGG | + | chr3.3:78615997-78616016 | None:intergenic | 50.0% | |
GTAGAAGGAAGAGGAGGTGG+AGG | + | chr3.3:78615994-78616013 | None:intergenic | 55.0% | |
GAAGGAAGAGGAGGTGGAGG+CGG | + | chr3.3:78615991-78616010 | None:intergenic | 60.0% | |
GGAAGAGGAGGTGGAGGCGG+CGG | + | chr3.3:78615988-78616007 | None:intergenic | 70.0% | |
AGAGGAGGTGGAGGCGGCGG+CGG | + | chr3.3:78615985-78616004 | None:intergenic | 75.0% | |
! | GGAGGTGGAGGCGGCGGCGG+TGG | + | chr3.3:78615982-78616001 | None:intergenic | 85.0% |
! | GGTGGAGGCGGCGGCGGTGG+CGG | + | chr3.3:78615979-78615998 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 78615404 | 78616107 | 78615404 | ID=MS.gene31052 |
chr3.3 | mRNA | 78615404 | 78616107 | 78615404 | ID=MS.gene31052.t1;Parent=MS.gene31052 |
chr3.3 | exon | 78615916 | 78616107 | 78615916 | ID=MS.gene31052.t1.exon1;Parent=MS.gene31052.t1 |
chr3.3 | CDS | 78615916 | 78616107 | 78615916 | ID=cds.MS.gene31052.t1;Parent=MS.gene31052.t1 |
chr3.3 | exon | 78615404 | 78615829 | 78615404 | ID=MS.gene31052.t1.exon2;Parent=MS.gene31052.t1 |
chr3.3 | CDS | 78615404 | 78615829 | 78615404 | ID=cds.MS.gene31052.t1;Parent=MS.gene31052.t1 |
Gene Sequence |
Protein sequence |