Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31065.t1 | XP_003597476.1 | 91.4 | 627 | 42 | 2 | 1 | 623 | 1 | 619 | 3.90E-293 | 1016.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31065.t1 | O23116 | 48.7 | 536 | 237 | 8 | 1 | 536 | 1 | 498 | 8.2e-122 | 439.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31065.t1 | G7IUG2 | 91.4 | 627 | 42 | 2 | 1 | 623 | 1 | 619 | 2.8e-293 | 1016.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31065.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31065.t1 | MTR_2g098470 | 93.301 | 627 | 30 | 2 | 1 | 623 | 1 | 619 | 0.0 | 1174 |
| MS.gene31065.t1 | MTR_5g087790 | 63.312 | 308 | 102 | 4 | 24 | 329 | 35 | 333 | 2.60e-132 | 401 |
| MS.gene31065.t1 | MTR_3g078770 | 63.946 | 294 | 92 | 4 | 39 | 330 | 53 | 334 | 1.87e-125 | 384 |
| MS.gene31065.t1 | MTR_3g087530 | 58.238 | 261 | 94 | 5 | 35 | 288 | 29 | 281 | 1.57e-98 | 308 |
| MS.gene31065.t1 | MTR_6g460640 | 53.731 | 268 | 111 | 4 | 27 | 290 | 32 | 290 | 1.03e-94 | 305 |
| MS.gene31065.t1 | MTR_8g091370 | 56.716 | 268 | 94 | 6 | 32 | 288 | 16 | 272 | 6.33e-94 | 296 |
| MS.gene31065.t1 | MTR_6g060600 | 53.358 | 268 | 112 | 4 | 27 | 290 | 32 | 290 | 4.19e-93 | 301 |
| MS.gene31065.t1 | MTR_3g010790 | 55.882 | 204 | 78 | 3 | 94 | 290 | 1 | 199 | 2.31e-75 | 249 |
| MS.gene31065.t1 | MTR_2g098450 | 66.013 | 153 | 43 | 3 | 475 | 623 | 65 | 212 | 7.36e-63 | 207 |
| MS.gene31065.t1 | MTR_2g098450 | 79.032 | 62 | 13 | 0 | 16 | 77 | 3 | 64 | 1.28e-23 | 99.8 |
| MS.gene31065.t1 | MTR_1g024420 | 41.121 | 107 | 63 | 0 | 30 | 136 | 2 | 108 | 1.62e-24 | 99.0 |
| MS.gene31065.t1 | MTR_7g095580 | 55.385 | 65 | 29 | 0 | 83 | 147 | 1 | 65 | 6.95e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31065.t1 | AT1G73730 | 50.877 | 627 | 244 | 15 | 1 | 623 | 1 | 567 | 0.0 | 531 |
| MS.gene31065.t1 | AT1G73730 | 51.311 | 610 | 233 | 15 | 18 | 623 | 6 | 555 | 0.0 | 526 |
| MS.gene31065.t1 | AT3G20770 | 69.145 | 269 | 79 | 3 | 24 | 290 | 35 | 301 | 6.77e-129 | 393 |
| MS.gene31065.t1 | AT2G27050 | 67.778 | 270 | 81 | 4 | 25 | 290 | 36 | 303 | 2.23e-128 | 390 |
| MS.gene31065.t1 | AT5G10120 | 55.849 | 265 | 110 | 3 | 29 | 288 | 14 | 276 | 4.31e-96 | 303 |
| MS.gene31065.t1 | AT5G65100 | 52.190 | 274 | 112 | 4 | 33 | 288 | 33 | 305 | 8.08e-90 | 289 |
| MS.gene31065.t1 | AT5G21120 | 52.797 | 286 | 124 | 5 | 31 | 306 | 41 | 325 | 1.15e-89 | 288 |
| MS.gene31065.t1 | AT5G21120 | 52.797 | 286 | 124 | 5 | 31 | 306 | 41 | 325 | 1.15e-89 | 288 |
| MS.gene31065.t1 | AT5G21120 | 52.797 | 286 | 124 | 5 | 31 | 306 | 48 | 332 | 1.28e-89 | 288 |
Find 171 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTCTCTGGTTGCCTAAT+TGG | 0.150692 | 2.4:-5522366 | None:intergenic |
| GGATCACCATTATTAGATTT+TGG | 0.201596 | 2.4:+5522492 | MS.gene31065:CDS |
| ATGGGTGAACTCGTTGAAAT+TGG | 0.238500 | 2.4:+5519826 | MS.gene31065:CDS |
| ATATTCGGCAGTTTACTTCT+AGG | 0.240085 | 2.4:-5521922 | None:intergenic |
| GGCCCCTCATGTCTTATTTC+CGG | 0.240962 | 2.4:-5522030 | None:intergenic |
| AAGTCATGTGGTTTCTTATA+AGG | 0.251269 | 2.4:-5521406 | None:intergenic |
| TTTAGATGATATCATGGGTT+TGG | 0.262439 | 2.4:+5522548 | MS.gene31065:CDS |
| GCAGGTCTTGGAGCGTGCTC+TGG | 0.271067 | 2.4:-5521225 | None:intergenic |
| AACCCATGATATCATCTAAA+AGG | 0.274602 | 2.4:-5522545 | None:intergenic |
| CATGAGTCAGTTCATTTATC+AGG | 0.278769 | 2.4:+5522096 | MS.gene31065:CDS |
| GTTGAAATTGGAGCTGATAT+TGG | 0.286718 | 2.4:+5519838 | MS.gene31065:CDS |
| AGACAGGAGCAATCAGTTTA+TGG | 0.290050 | 2.4:+5521750 | MS.gene31065:CDS |
| TCAGCTTCATGAGGCATAAC+AGG | 0.297998 | 2.4:-5522252 | None:intergenic |
| AGAGATTGAGGCAGAAGATT+TGG | 0.298365 | 2.4:+5520832 | MS.gene31065:CDS |
| CGGCAAAGGAAAGTTCAATT+TGG | 0.299516 | 2.4:+5521542 | MS.gene31065:CDS |
| CCAAACCTATCCAGCTCGTT+TGG | 0.316285 | 2.4:-5522471 | None:intergenic |
| TGTTGGTTCTGTTTCTTCTA+AGG | 0.322080 | 2.4:+5521726 | MS.gene31065:CDS |
| CCTGTTCATTCCCATGAATC+TGG | 0.335499 | 2.4:-5521978 | None:intergenic |
| ACCCGAGCGTTGCATCTTGC+AGG | 0.344551 | 2.4:-5521243 | None:intergenic |
| TCGTCTCTCTCATTCATATT+CGG | 0.345135 | 2.4:-5521937 | None:intergenic |
| GAACGTGGTCGTTTCTTCCT+AGG | 0.356496 | 2.4:-5521838 | None:intergenic |
| TTAGATGATATCATGGGTTT+GGG | 0.360802 | 2.4:+5522549 | MS.gene31065:CDS |
| TCTTAGCTCGATCGGAATCT+TGG | 0.364311 | 2.4:-5521810 | None:intergenic |
| TTGAAATTGGAGCTGATATT+GGG | 0.378190 | 2.4:+5519839 | MS.gene31065:CDS |
| AAAACTCCAAAATCTAATAA+TGG | 0.379865 | 2.4:-5522498 | None:intergenic |
| CCGGGTGCTGTTACATGAAC+TGG | 0.385720 | 2.4:-5522129 | None:intergenic |
| GCGTTGCATCTTGCAGGTCT+TGG | 0.388206 | 2.4:-5521237 | None:intergenic |
| TTGATGTTGCCCATCCTGAC+TGG | 0.393798 | 2.4:-5522310 | None:intergenic |
| GAGGAAATATCCATTGGAAA+AGG | 0.394290 | 2.4:+5521306 | MS.gene31065:CDS |
| TTATCAGAGGAACCACTAAC+TGG | 0.402423 | 2.4:-5521082 | None:intergenic |
| CTCCGCCTTGGTGGCCCACC+GGG | 0.404229 | 2.4:+5521335 | MS.gene31065:CDS |
| TGCTCTGGGAGTTCCCATTT+CGG | 0.409722 | 2.4:-5521210 | None:intergenic |
| AAGAAAAGGTGAAGTTTGAT+AGG | 0.411593 | 2.4:+5521122 | MS.gene31065:CDS |
| GAGGGGCCAAGTCATCTATC+TGG | 0.415007 | 2.4:+5522045 | MS.gene31065:CDS |
| CCTCCGCCTTGGTGGCCCAC+CGG | 0.415149 | 2.4:+5521334 | MS.gene31065:CDS |
| ATAGTTATTGCAGCATTCTC+TGG | 0.415425 | 2.4:-5522378 | None:intergenic |
| AAGGAAAGTTCAATTTGGTT+GGG | 0.416475 | 2.4:+5521547 | MS.gene31065:CDS |
| TCACTGTTCGCGGCGGGACC+AGG | 0.419875 | 2.4:-5522342 | None:intergenic |
| CCAAACGAGCTGGATAGGTT+TGG | 0.422592 | 2.4:+5522471 | MS.gene31065:CDS |
| GAGGCCGAAAATAACCGAAA+TGG | 0.427774 | 2.4:+5521196 | MS.gene31065:CDS |
| ATGAATGGTGATGAAATTAT+CGG | 0.435300 | 2.4:+5522414 | MS.gene31065:CDS |
| CCGCGAACAGTGAACCAATT+AGG | 0.435891 | 2.4:+5522352 | MS.gene31065:CDS |
| CCTAATTGGTTCACTGTTCG+CGG | 0.440195 | 2.4:-5522352 | None:intergenic |
| TCATACTTGGCTATGGCTGC+AGG | 0.444642 | 2.4:-5521151 | None:intergenic |
| CGACCACCAATCTTCATTCC+CGG | 0.445023 | 2.4:-5521353 | None:intergenic |
| CTGTTTCTTCTAAGGAAGAC+AGG | 0.448155 | 2.4:+5521734 | MS.gene31065:CDS |
| TACAATCCAGTCACAAGATA+TGG | 0.449117 | 2.4:+5522285 | MS.gene31065:CDS |
| GTAGCTGCACTCCAGATTCA+TGG | 0.449306 | 2.4:+5521967 | MS.gene31065:CDS |
| CAGGTCTTGGAGCGTGCTCT+GGG | 0.450202 | 2.4:-5521224 | None:intergenic |
| TATTAGATATCACAATATTC+CGG | 0.450502 | 2.4:+5520790 | MS.gene31065:CDS |
| CAAACCTATCCAGCTCGTTT+GGG | 0.454172 | 2.4:-5522470 | None:intergenic |
| GAGGTGCCAGTTCATTTATC+AGG | 0.455057 | 2.4:+5522072 | MS.gene31065:CDS |
| AAAGGAAAGTTCAATTTGGT+TGG | 0.458921 | 2.4:+5521546 | MS.gene31065:CDS |
| AAGATTTGGAGAGGCGGATG+TGG | 0.460361 | 2.4:+5520846 | MS.gene31065:CDS |
| CACATCTTCTTCAAGTCATG+TGG | 0.464103 | 2.4:-5521418 | None:intergenic |
| GGCCCACCGGGAATGAAGAT+TGG | 0.471569 | 2.4:+5521347 | MS.gene31065:CDS |
| TCGCGAGTTATCTGATGGTT+CGG | 0.474239 | 2.4:-5521776 | None:intergenic |
| AGTAGCGATAACGGTACGTC+TGG | 0.478350 | 2.4:+5521607 | MS.gene31065:CDS |
| AAGACACTCTGCTTCATACT+TGG | 0.479673 | 2.4:-5521164 | None:intergenic |
| AGGCCGAAAATAACCGAAAT+GGG | 0.482158 | 2.4:+5521197 | MS.gene31065:CDS |
| TCACCATTCATATTTGCTGC+AGG | 0.483300 | 2.4:-5522402 | None:intergenic |
| CCAGATTCATGGGAATGAAC+AGG | 0.489559 | 2.4:+5521978 | MS.gene31065:CDS |
| AGGGTGTTCCTCCGCCTTGG+TGG | 0.489757 | 2.4:+5521326 | MS.gene31065:CDS |
| CCAGTTCATGTAACAGCACC+CGG | 0.490378 | 2.4:+5522129 | MS.gene31065:CDS |
| AAAAGGGTGTTCCTCCGCCT+TGG | 0.490659 | 2.4:+5521323 | MS.gene31065:CDS |
| AGGAAATATCCATTGGAAAA+GGG | 0.497233 | 2.4:+5521307 | MS.gene31065:CDS |
| CACAAGATATGGTCCCAGTC+AGG | 0.497696 | 2.4:+5522296 | MS.gene31065:CDS |
| ATTGGTTCACTGTTCGCGGC+GGG | 0.497840 | 2.4:-5522348 | None:intergenic |
| CATTCCCAAACGAGCTGGAT+AGG | 0.500944 | 2.4:+5522466 | MS.gene31065:CDS |
| TAAGTACATGCTGAAGCTCA+TGG | 0.501457 | 2.4:+5521006 | MS.gene31065:CDS |
| TCATCACTGACATCTTTCTC+CGG | 0.504020 | 2.4:-5520809 | None:intergenic |
| AAGAACACCAGTTGGCATAT+CGG | 0.504528 | 2.4:-5521635 | None:intergenic |
| ATTTCATTGTCAGATTGTGC+TGG | 0.504859 | 2.4:-5521886 | None:intergenic |
| GGAATTACCGATATGCCAAC+TGG | 0.505544 | 2.4:+5521628 | MS.gene31065:CDS |
| ACCTGCAAGATGCAACGCTC+GGG | 0.506370 | 2.4:+5521242 | MS.gene31065:CDS |
| AGGAAAGTTCAATTTGGTTG+GGG | 0.508259 | 2.4:+5521548 | MS.gene31065:CDS |
| GATGAAATGATGCAGTACTT+TGG | 0.511735 | 2.4:+5522576 | MS.gene31065:CDS |
| TAGAGCTTGGTGGAAAGAAA+AGG | 0.512695 | 2.4:+5521108 | MS.gene31065:CDS |
| GTCGAGAAGAAGCTCTCATT+AGG | 0.512866 | 2.4:+5521578 | MS.gene31065:CDS |
| ATATCATCTAAAAGGAATGA+TGG | 0.513812 | 2.4:-5522537 | None:intergenic |
| CTGATAACATTAGAGCTTGG+TGG | 0.517273 | 2.4:+5521098 | MS.gene31065:CDS |
| TGTCAGTGATGAAGAGATTG+AGG | 0.518821 | 2.4:+5520820 | MS.gene31065:CDS |
| TCATGTCCTGATAAATGAAC+TGG | 0.521338 | 2.4:-5522078 | None:intergenic |
| GGAAGAAACGACCACGTTCG+AGG | 0.522146 | 2.4:+5521842 | MS.gene31065:CDS |
| TCCTCAGAGGAAATATCCAT+TGG | 0.525115 | 2.4:+5521300 | MS.gene31065:CDS |
| CTGGGACCATATCTTGTGAC+TGG | 0.525198 | 2.4:-5522291 | None:intergenic |
| GCTAGCAACTATGATGTTGA+TGG | 0.525679 | 2.4:+5521691 | MS.gene31065:CDS |
| CTCTGCTTCATACTTGGCTA+TGG | 0.528334 | 2.4:-5521158 | None:intergenic |
| AAATGTCGAGGGCACAAGAT+GGG | 0.530650 | 2.4:+5520978 | MS.gene31065:CDS |
| GAGAAGGGAAAACCAGTTAG+TGG | 0.532079 | 2.4:+5521070 | MS.gene31065:CDS |
| AAGATCGTATCAAACTCAAA+AGG | 0.535032 | 2.4:+5520870 | MS.gene31065:CDS |
| AACAGAACCAACACCATCAT+CGG | 0.547221 | 2.4:-5521716 | None:intergenic |
| TTCCTTCGCGAGTTATCTGA+TGG | 0.548644 | 2.4:-5521781 | None:intergenic |
| AGGCAGCCTAGTAGCGATAA+CGG | 0.550005 | 2.4:+5521598 | MS.gene31065:CDS |
| CAACATCAACATCTGCAGCC+TGG | 0.553510 | 2.4:+5522324 | MS.gene31065:CDS |
| CCGGTGGGCCACCAAGGCGG+AGG | 0.554118 | 2.4:-5521334 | None:intergenic |
| GATGTTGATGGTACCGATGA+TGG | 0.554779 | 2.4:+5521703 | MS.gene31065:CDS |
| AGATATGGTCCCAGTCAGGA+TGG | 0.555307 | 2.4:+5522300 | MS.gene31065:CDS |
| AGACACATTCCCAAACGAGC+TGG | 0.557596 | 2.4:+5522461 | MS.gene31065:CDS |
| TAGCTGCACTCCAGATTCAT+GGG | 0.558033 | 2.4:+5521968 | MS.gene31065:CDS |
| TTGCTAGCACTACTAGCAGC+AGG | 0.559279 | 2.4:-5521676 | None:intergenic |
| CCACCGGGAATGAAGATTGG+TGG | 0.559941 | 2.4:+5521350 | MS.gene31065:CDS |
| CTTGAAGAAGATGTGGAAAG+TGG | 0.561365 | 2.4:+5521426 | MS.gene31065:CDS |
| CCTCTGATAACATTAGAGCT+TGG | 0.561811 | 2.4:+5521095 | MS.gene31065:CDS |
| CAGCTTCATGAGGCATAACA+GGG | 0.562451 | 2.4:-5522251 | None:intergenic |
| TGCAAACAGTATGATTTCCT+CGG | 0.564591 | 2.4:+5522176 | MS.gene31065:CDS |
| GACCTGCAAGATGCAACGCT+CGG | 0.564854 | 2.4:+5521241 | MS.gene31065:CDS |
| TGATGTTGCCCATCCTGACT+GGG | 0.565505 | 2.4:-5522309 | None:intergenic |
| AAAAGGAATGATGGTGATGG+TGG | 0.567036 | 2.4:-5522528 | None:intergenic |
| GTATGGAATCATTCCTGAGA+AGG | 0.572173 | 2.4:+5521054 | MS.gene31065:CDS |
| AAAGCTCGTGGATTTGTGTA+TGG | 0.575890 | 2.4:+5521037 | MS.gene31065:CDS |
| CACATGACTTGAAGAAGATG+TGG | 0.577025 | 2.4:+5521419 | MS.gene31065:CDS |
| AGGTTGCTTCTTAGCTCGAT+CGG | 0.579443 | 2.4:-5521818 | None:intergenic |
| CAGTTCATTTATCAGGACAC+GGG | 0.580228 | 2.4:+5522103 | MS.gene31065:CDS |
| TATGGAATCATTCCTGAGAA+GGG | 0.580239 | 2.4:+5521055 | MS.gene31065:CDS |
| TCCAATGGATATTTCCTCTG+AGG | 0.580696 | 2.4:-5521301 | None:intergenic |
| AATGGATATTTCCTCTGAGG+AGG | 0.582773 | 2.4:-5521298 | None:intergenic |
| GGTGATGAAATTATCGGAGG+AGG | 0.587365 | 2.4:+5522420 | MS.gene31065:CDS |
| TCGCTTCCAGATAGATGACT+TGG | 0.588209 | 2.4:-5522051 | None:intergenic |
| ATGGAAGTGTGCAAAGCTCG+TGG | 0.588400 | 2.4:+5521025 | MS.gene31065:CDS |
| CCACCAATCTTCATTCCCGG+TGG | 0.588777 | 2.4:-5521350 | None:intergenic |
| CCCTCATGTCTTATTTCCGG+CGG | 0.590753 | 2.4:-5522027 | None:intergenic |
| TCAGTTCATTTATCAGGACA+CGG | 0.594222 | 2.4:+5522102 | MS.gene31065:CDS |
| ATGCCTGCAGCAAATATGAA+TGG | 0.596398 | 2.4:+5522399 | MS.gene31065:CDS |
| TCATGTGGTTTCTTATAAGG+AGG | 0.596463 | 2.4:-5521403 | None:intergenic |
| GATGGTACCGATGATGGTGT+TGG | 0.596633 | 2.4:+5521709 | MS.gene31065:CDS |
| GGAAAGTTCAATTTGGTTGG+GGG | 0.600209 | 2.4:+5521549 | MS.gene31065:CDS |
| GCAAGACAAGATGACGGCAA+AGG | 0.603284 | 2.4:+5521528 | MS.gene31065:CDS |
| TTCCCGGTGGGCCACCAAGG+CGG | 0.606722 | 2.4:-5521337 | None:intergenic |
| ATAAGAGTAATGATCAAACC+CGG | 0.606820 | 2.4:-5522148 | None:intergenic |
| TCATTCCCGGTGGGCCACCA+AGG | 0.607148 | 2.4:-5521340 | None:intergenic |
| TTGAAGAAGATGTGGAAAGT+GGG | 0.608760 | 2.4:+5521427 | MS.gene31065:CDS |
| AAGGTGAAGTTTGATAGGAA+TGG | 0.608844 | 2.4:+5521127 | MS.gene31065:CDS |
| AAAATGTCGAGGGCACAAGA+TGG | 0.611433 | 2.4:+5520977 | MS.gene31065:CDS |
| AACTGAGAATAGTGCAGCGG+TGG | 0.612241 | 2.4:-5522222 | None:intergenic |
| CCCTAGAGAAGCAAAAGCCG+AGG | 0.615253 | 2.4:+5520927 | MS.gene31065:CDS |
| CACCAATCTTCATTCCCGGT+GGG | 0.616240 | 2.4:-5521349 | None:intergenic |
| AAAGTGTGTATATGAGTAGA+CGG | 0.616455 | 2.4:+5522199 | MS.gene31065:CDS |
| GATATGGTCCCAGTCAGGAT+GGG | 0.617269 | 2.4:+5522301 | MS.gene31065:CDS |
| CCGCCGGAAATAAGACATGA+GGG | 0.619238 | 2.4:+5522027 | MS.gene31065:CDS |
| AATTGGTTCACTGTTCGCGG+CGG | 0.624847 | 2.4:-5522349 | None:intergenic |
| TATCAAACTCAAAAGGCTCA+AGG | 0.625808 | 2.4:+5520877 | MS.gene31065:CDS |
| CCAAGCTCTAATGTTATCAG+AGG | 0.626452 | 2.4:-5521095 | None:intergenic |
| TCAAGAAGAAGAACACCAGT+TGG | 0.627033 | 2.4:-5521643 | None:intergenic |
| ACTCATATACACACTTTCCG+AGG | 0.634311 | 2.4:-5522193 | None:intergenic |
| AGGCAGAAGATTTGGAGAGG+CGG | 0.634433 | 2.4:+5520840 | MS.gene31065:CDS |
| GACGTACCGTTATCGCTACT+AGG | 0.635231 | 2.4:-5521604 | None:intergenic |
| CTCGTAGGAAGAAAATGTCG+AGG | 0.637174 | 2.4:+5520966 | MS.gene31065:CDS |
| GCCGCCGGAAATAAGACATG+AGG | 0.637786 | 2.4:+5522026 | MS.gene31065:CDS |
| GCTGCACTTGACCTCGAACG+TGG | 0.640254 | 2.4:-5521853 | None:intergenic |
| TTGAGGCAGAAGATTTGGAG+AGG | 0.640791 | 2.4:+5520837 | MS.gene31065:CDS |
| CAGTTCATGTAACAGCACCC+GGG | 0.645071 | 2.4:+5522130 | MS.gene31065:CDS |
| AGATTGTGCTGGTAATGTGT+CGG | 0.646269 | 2.4:-5521875 | None:intergenic |
| AGTCATCTGATCAAGCTCGT+AGG | 0.652332 | 2.4:+5520951 | MS.gene31065:CDS |
| TCGCACTTGAATCTACCTCA+TGG | 0.652796 | 2.4:+5521373 | MS.gene31065:CDS |
| AAGTCATCTATCTGGAAGCG+AGG | 0.655312 | 2.4:+5522053 | MS.gene31065:CDS |
| ATCGAGCTAAGAAGCAACCT+AGG | 0.657044 | 2.4:+5521821 | MS.gene31065:CDS |
| TGCAACTGAGAATAGTGCAG+CGG | 0.657420 | 2.4:-5522225 | None:intergenic |
| AACCATCAGATAACTCGCGA+AGG | 0.657732 | 2.4:+5521779 | MS.gene31065:CDS |
| TCGTAGGAAGAAAATGTCGA+GGG | 0.660921 | 2.4:+5520967 | MS.gene31065:CDS |
| GCTTGATCAGATGACTGCCT+CGG | 0.661645 | 2.4:-5520944 | None:intergenic |
| ATGCTTGCAAGACAAGATGA+CGG | 0.662559 | 2.4:+5521522 | MS.gene31065:CDS |
| AGATTATAATCAGCTTCATG+AGG | 0.669056 | 2.4:-5522261 | None:intergenic |
| AACACTGTGATCCTCCTCAG+AGG | 0.669904 | 2.4:+5521287 | MS.gene31065:CDS |
| CGCCGGAAATAAGACATGAG+GGG | 0.670859 | 2.4:+5522028 | MS.gene31065:CDS |
| TCTAAAAGGAATGATGGTGA+TGG | 0.676090 | 2.4:-5522531 | None:intergenic |
| TAAGAGTAATGATCAAACCC+GGG | 0.678500 | 2.4:-5522147 | None:intergenic |
| TAAGGAGGACTCTGACCATG+AGG | 0.682592 | 2.4:-5521388 | None:intergenic |
| AATGGTGATGAAATTATCGG+AGG | 0.683666 | 2.4:+5522417 | MS.gene31065:CDS |
| AGAGTGTCTTGCTATGAGCG+AGG | 0.692638 | 2.4:+5521177 | MS.gene31065:CDS |
| AGTTCATTTATCAGGACACG+GGG | 0.707481 | 2.4:+5522104 | MS.gene31065:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTCCAAAATCTAATAA+TGG | - | chr2.4:5522501-5522520 | None:intergenic | 20.0% |
| !! | TATTAGATATCACAATATTC+CGG | + | chr2.4:5520790-5520809 | MS.gene31065:CDS | 20.0% |
| !! | TTATTAGGGTAGAAAAAATA+AGG | + | chr2.4:5520267-5520286 | MS.gene31065:intron | 20.0% |
| !! | TTGTTAAAGTGTAAAAATGT+CGG | + | chr2.4:5520232-5520251 | MS.gene31065:intron | 20.0% |
| !!! | ACTTATCAAATAAGTTGAAA+TGG | - | chr2.4:5520661-5520680 | None:intergenic | 20.0% |
| !!! | ATGTGTTATGTGAAATTTTT+GGG | + | chr2.4:5520387-5520406 | MS.gene31065:intron | 20.0% |
| !!! | ATGTTTTGTGTGAAATTTTT+GGG | + | chr2.4:5520199-5520218 | MS.gene31065:intron | 20.0% |
| !!! | CAATTTATTTTATTGTTCTG+CGG | + | chr2.4:5520694-5520713 | MS.gene31065:intron | 20.0% |
| !!! | GGTTTTTGTAAATTTTTTGT+GGG | + | chr2.4:5519968-5519987 | MS.gene31065:intron | 20.0% |
| !!! | TATTCTGAGAAATTGAATTT+AGG | + | chr2.4:5519896-5519915 | MS.gene31065:intron | 20.0% |
| !!! | TGAATTTAGGTTTTTGTTTT+TGG | + | chr2.4:5519909-5519928 | MS.gene31065:intron | 20.0% |
| !!! | TGGTTTTTGTAAATTTTTTG+TGG | + | chr2.4:5519967-5519986 | MS.gene31065:intron | 20.0% |
| ! | ATATCATCTAAAAGGAATGA+TGG | - | chr2.4:5522540-5522559 | None:intergenic | 25.0% |
| ! | ATTAAAACTTAGTGTGTGTT+TGG | + | chr2.4:5520290-5520309 | MS.gene31065:intron | 25.0% |
| ! | CGCAGAACAATAAAATAAAT+TGG | - | chr2.4:5520696-5520715 | None:intergenic | 25.0% |
| ! | GGACTTTAATGTTGTTAAAT+TGG | + | chr2.4:5520409-5520428 | MS.gene31065:intron | 25.0% |
| ! | TGATCAAATCATGATTTAGT+TGG | + | chr2.4:5520050-5520069 | MS.gene31065:intron | 25.0% |
| ! | TGTTAAATTGGAAAAGATGT+CGG | + | chr2.4:5520421-5520440 | MS.gene31065:intron | 25.0% |
| !! | ATGAATGGTGATGAAATTAT+CGG | + | chr2.4:5522414-5522433 | MS.gene31065:CDS | 25.0% |
| !! | ATTCCTTTTAGATGATATCA+TGG | + | chr2.4:5522542-5522561 | MS.gene31065:CDS | 25.0% |
| !! | CATGTGTTATGTGAAATTTT+TGG | + | chr2.4:5520386-5520405 | MS.gene31065:intron | 25.0% |
| !! | CATGTTTTGTGTGAAATTTT+TGG | + | chr2.4:5520198-5520217 | MS.gene31065:intron | 25.0% |
| !! | TGTGTTATGTGAAATTTTTG+GGG | + | chr2.4:5520388-5520407 | MS.gene31065:intron | 25.0% |
| !! | TGTTTTGTGTGAAATTTTTG+GGG | + | chr2.4:5520200-5520219 | MS.gene31065:intron | 25.0% |
| !! | TTCCTTTTAGATGATATCAT+GGG | + | chr2.4:5522543-5522562 | MS.gene31065:CDS | 25.0% |
| !!! | ATTGTGTTTATGTGTTGATT+AGG | + | chr2.4:5520073-5520092 | MS.gene31065:intron | 25.0% |
| !!! | GTTTTGTGATTCTTTGTTAT+TGG | + | chr2.4:5519947-5519966 | MS.gene31065:intron | 25.0% |
| !!! | TAAAAATGTCGGTTTATTGT+CGG | + | chr2.4:5520243-5520262 | MS.gene31065:intron | 25.0% |
| AAAGGAAAGTTCAATTTGGT+TGG | + | chr2.4:5521546-5521565 | MS.gene31065:CDS | 30.0% | |
| AAAGTGTGTATATGAGTAGA+CGG | + | chr2.4:5522199-5522218 | MS.gene31065:CDS | 30.0% | |
| AACATTAAACTGCAAGCTAT+CGG | - | chr2.4:5520584-5520603 | None:intergenic | 30.0% | |
| AACCCATGATATCATCTAAA+AGG | - | chr2.4:5522548-5522567 | None:intergenic | 30.0% | |
| AAGAAAAGGTGAAGTTTGAT+AGG | + | chr2.4:5521122-5521141 | MS.gene31065:CDS | 30.0% | |
| AAGATCGTATCAAACTCAAA+AGG | + | chr2.4:5520870-5520889 | MS.gene31065:CDS | 30.0% | |
| AAGGAAAGTTCAATTTGGTT+GGG | + | chr2.4:5521547-5521566 | MS.gene31065:CDS | 30.0% | |
| AAGTCATGTGGTTTCTTATA+AGG | - | chr2.4:5521409-5521428 | None:intergenic | 30.0% | |
| AGATTATAATCAGCTTCATG+AGG | - | chr2.4:5522264-5522283 | None:intergenic | 30.0% | |
| AGGAAATATCCATTGGAAAA+GGG | + | chr2.4:5521307-5521326 | MS.gene31065:CDS | 30.0% | |
| AGTACATCACATTTAATCAG+AGG | - | chr2.4:5520740-5520759 | None:intergenic | 30.0% | |
| ATAAGAGTAATGATCAAACC+CGG | - | chr2.4:5522151-5522170 | None:intergenic | 30.0% | |
| ATCATGATTTGATCAAAACC+TGG | - | chr2.4:5520045-5520064 | None:intergenic | 30.0% | |
| CACCTGATATTGCAAAAATA+AGG | + | chr2.4:5521479-5521498 | MS.gene31065:CDS | 30.0% | |
| CTGATATTGCAAAAATAAGG+AGG | + | chr2.4:5521482-5521501 | MS.gene31065:CDS | 30.0% | |
| GTTGATTAGGTTAACTCTAT+TGG | + | chr2.4:5520086-5520105 | MS.gene31065:intron | 30.0% | |
| TTAGATGATATCATGGGTTT+GGG | + | chr2.4:5522549-5522568 | MS.gene31065:CDS | 30.0% | |
| TTAGTTTCCTCAATGTCATT+CGG | - | chr2.4:5520359-5520378 | None:intergenic | 30.0% | |
| TTGAAATTGGAGCTGATATT+GGG | + | chr2.4:5519839-5519858 | MS.gene31065:CDS | 30.0% | |
| TTGAGAATTTGCAGAAATCA+CGG | + | chr2.4:5520482-5520501 | MS.gene31065:intron | 30.0% | |
| TTTAGATGATATCATGGGTT+TGG | + | chr2.4:5522548-5522567 | MS.gene31065:CDS | 30.0% | |
| ! | ATAGCTTGCAGTTTAATGTT+TGG | + | chr2.4:5520584-5520603 | MS.gene31065:intron | 30.0% |
| ! | GATTTTCCAAAATCACATTG+AGG | - | chr2.4:5520535-5520554 | None:intergenic | 30.0% |
| ! | GGATCACCATTATTAGATTT+TGG | + | chr2.4:5522492-5522511 | MS.gene31065:CDS | 30.0% |
| !! | AAAAATGTCGGTTTATTGTC+GGG | + | chr2.4:5520244-5520263 | MS.gene31065:intron | 30.0% |
| !!! | CTCCTTATTTTTGCAATATC+AGG | - | chr2.4:5521484-5521503 | None:intergenic | 30.0% |
| !!! | TTCTGCGGATTTTAATTGAA+TGG | + | chr2.4:5520709-5520728 | MS.gene31065:intron | 30.0% |
| AAGGTGAAGTTTGATAGGAA+TGG | + | chr2.4:5521127-5521146 | MS.gene31065:CDS | 35.0% | |
| AGGAAAGTTCAATTTGGTTG+GGG | + | chr2.4:5521548-5521567 | MS.gene31065:CDS | 35.0% | |
| ATAGTTATTGCAGCATTCTC+TGG | - | chr2.4:5522381-5522400 | None:intergenic | 35.0% | |
| ATATTCGGCAGTTTACTTCT+AGG | - | chr2.4:5521925-5521944 | None:intergenic | 35.0% | |
| ATTTCATTGTCAGATTGTGC+TGG | - | chr2.4:5521889-5521908 | None:intergenic | 35.0% | |
| CAAGTTCACTTGTACATCTT+TGG | + | chr2.4:5520632-5520651 | MS.gene31065:intron | 35.0% | |
| CATGAGTCAGTTCATTTATC+AGG | + | chr2.4:5522096-5522115 | MS.gene31065:CDS | 35.0% | |
| GAGGAAATATCCATTGGAAA+AGG | + | chr2.4:5521306-5521325 | MS.gene31065:CDS | 35.0% | |
| GATGAAATGATGCAGTACTT+TGG | + | chr2.4:5522576-5522595 | MS.gene31065:CDS | 35.0% | |
| GGTTTATTGTCGGGTTATTA+GGG | + | chr2.4:5520253-5520272 | MS.gene31065:intron | 35.0% | |
| GTGTATGTTTGGTATCAAAG+TGG | - | chr2.4:5520557-5520576 | None:intergenic | 35.0% | |
| GTTGAAATTGGAGCTGATAT+TGG | + | chr2.4:5519838-5519857 | MS.gene31065:CDS | 35.0% | |
| TAAGAGTAATGATCAAACCC+GGG | - | chr2.4:5522150-5522169 | None:intergenic | 35.0% | |
| TACAATCCAGTCACAAGATA+TGG | + | chr2.4:5522285-5522304 | MS.gene31065:CDS | 35.0% | |
| TATCAAACTCAAAAGGCTCA+AGG | + | chr2.4:5520877-5520896 | MS.gene31065:CDS | 35.0% | |
| TATGGAATCATTCCTGAGAA+GGG | + | chr2.4:5521055-5521074 | MS.gene31065:CDS | 35.0% | |
| TCAGTTCATTTATCAGGACA+CGG | + | chr2.4:5522102-5522121 | MS.gene31065:CDS | 35.0% | |
| TCATGTCCTGATAAATGAAC+TGG | - | chr2.4:5522081-5522100 | None:intergenic | 35.0% | |
| TCATGTGGTTTCTTATAAGG+AGG | - | chr2.4:5521406-5521425 | None:intergenic | 35.0% | |
| TCGTCTCTCTCATTCATATT+CGG | - | chr2.4:5521940-5521959 | None:intergenic | 35.0% | |
| TGCAAACAGTATGATTTCCT+CGG | + | chr2.4:5522176-5522195 | MS.gene31065:CDS | 35.0% | |
| TTGAAGAAGATGTGGAAAGT+GGG | + | chr2.4:5521427-5521446 | MS.gene31065:CDS | 35.0% | |
| ! | AATGGTGATGAAATTATCGG+AGG | + | chr2.4:5522417-5522436 | MS.gene31065:CDS | 35.0% |
| ! | AGCTACAATCAGCGTTATTT+TGG | - | chr2.4:5520332-5520351 | None:intergenic | 35.0% |
| ! | ATGAGACAGAATCTGTTTTG+AGG | + | chr2.4:5522004-5522023 | MS.gene31065:CDS | 35.0% |
| ! | CTATCGGTTAAGTGTATGTT+TGG | - | chr2.4:5520568-5520587 | None:intergenic | 35.0% |
| ! | TCTAAAAGGAATGATGGTGA+TGG | - | chr2.4:5522534-5522553 | None:intergenic | 35.0% |
| ! | TGTTCTGTGAATTTTTGACC+AGG | + | chr2.4:5520024-5520043 | MS.gene31065:intron | 35.0% |
| !! | GATTTGAAGTACTGTGCAAT+AGG | + | chr2.4:5520150-5520169 | MS.gene31065:intron | 35.0% |
| !! | GTTCCCATTTCGGTTATTTT+CGG | - | chr2.4:5521203-5521222 | None:intergenic | 35.0% |
| !! | TGTCTTGCAAGCATTTTGAT+TGG | - | chr2.4:5521516-5521535 | None:intergenic | 35.0% |
| !! | TGTTGGTTCTGTTTCTTCTA+AGG | + | chr2.4:5521726-5521745 | MS.gene31065:CDS | 35.0% |
| AAAGCTCGTGGATTTGTGTA+TGG | + | chr2.4:5521037-5521056 | MS.gene31065:CDS | 40.0% | |
| AACAGAACCAACACCATCAT+CGG | - | chr2.4:5521719-5521738 | None:intergenic | 40.0% | |
| AAGAACACCAGTTGGCATAT+CGG | - | chr2.4:5521638-5521657 | None:intergenic | 40.0% | |
| AAGACACTCTGCTTCATACT+TGG | - | chr2.4:5521167-5521186 | None:intergenic | 40.0% | |
| ACTCATATACACACTTTCCG+AGG | - | chr2.4:5522196-5522215 | None:intergenic | 40.0% | |
| AGACAGGAGCAATCAGTTTA+TGG | + | chr2.4:5521750-5521769 | MS.gene31065:CDS | 40.0% | |
| AGAGATTGAGGCAGAAGATT+TGG | + | chr2.4:5520832-5520851 | MS.gene31065:CDS | 40.0% | |
| AGGCCGAAAATAACCGAAAT+GGG | + | chr2.4:5521197-5521216 | MS.gene31065:CDS | 40.0% | |
| AGTTCATTTATCAGGACACG+GGG | + | chr2.4:5522104-5522123 | MS.gene31065:CDS | 40.0% | |
| ATGCCTGCAGCAAATATGAA+TGG | + | chr2.4:5522399-5522418 | MS.gene31065:CDS | 40.0% | |
| ATGCTTGCAAGACAAGATGA+CGG | + | chr2.4:5521522-5521541 | MS.gene31065:CDS | 40.0% | |
| ATGGGTGAACTCGTTGAAAT+TGG | + | chr2.4:5519826-5519845 | MS.gene31065:CDS | 40.0% | |
| CACATCTTCTTCAAGTCATG+TGG | - | chr2.4:5521421-5521440 | None:intergenic | 40.0% | |
| CACATGACTTGAAGAAGATG+TGG | + | chr2.4:5521419-5521438 | MS.gene31065:CDS | 40.0% | |
| CAGTTCATTTATCAGGACAC+GGG | + | chr2.4:5522103-5522122 | MS.gene31065:CDS | 40.0% | |
| CCTCTGATAACATTAGAGCT+TGG | + | chr2.4:5521095-5521114 | MS.gene31065:CDS | 40.0% | |
| CGGCAAAGGAAAGTTCAATT+TGG | + | chr2.4:5521542-5521561 | MS.gene31065:CDS | 40.0% | |
| CGGTTTATTGTCGGGTTATT+AGG | + | chr2.4:5520252-5520271 | MS.gene31065:intron | 40.0% | |
| CTGATAACATTAGAGCTTGG+TGG | + | chr2.4:5521098-5521117 | MS.gene31065:CDS | 40.0% | |
| CTTGAAGAAGATGTGGAAAG+TGG | + | chr2.4:5521426-5521445 | MS.gene31065:CDS | 40.0% | |
| GCTAGCAACTATGATGTTGA+TGG | + | chr2.4:5521691-5521710 | MS.gene31065:CDS | 40.0% | |
| GGAAAGTTCAATTTGGTTGG+GGG | + | chr2.4:5521549-5521568 | MS.gene31065:CDS | 40.0% | |
| GTATGGAATCATTCCTGAGA+AGG | + | chr2.4:5521054-5521073 | MS.gene31065:CDS | 40.0% | |
| TAAGTACATGCTGAAGCTCA+TGG | + | chr2.4:5521006-5521025 | MS.gene31065:CDS | 40.0% | |
| TCAAGAAGAAGAACACCAGT+TGG | - | chr2.4:5521646-5521665 | None:intergenic | 40.0% | |
| TCATCACTGACATCTTTCTC+CGG | - | chr2.4:5520812-5520831 | None:intergenic | 40.0% | |
| TCCAATGGATATTTCCTCTG+AGG | - | chr2.4:5521304-5521323 | None:intergenic | 40.0% | |
| TCCTCAGAGGAAATATCCAT+TGG | + | chr2.4:5521300-5521319 | MS.gene31065:CDS | 40.0% | |
| TCGTAGGAAGAAAATGTCGA+GGG | + | chr2.4:5520967-5520986 | MS.gene31065:CDS | 40.0% | |
| TGTCAGTGATGAAGAGATTG+AGG | + | chr2.4:5520820-5520839 | MS.gene31065:CDS | 40.0% | |
| TTATCAGAGGAACCACTAAC+TGG | - | chr2.4:5521085-5521104 | None:intergenic | 40.0% | |
| ! | AATGGATATTTCCTCTGAGG+AGG | - | chr2.4:5521301-5521320 | None:intergenic | 40.0% |
| ! | AGATTGTGCTGGTAATGTGT+CGG | - | chr2.4:5521878-5521897 | None:intergenic | 40.0% |
| ! | CCAAGCTCTAATGTTATCAG+AGG | - | chr2.4:5521098-5521117 | None:intergenic | 40.0% |
| ! | CTGTTTCTTCTAAGGAAGAC+AGG | + | chr2.4:5521734-5521753 | MS.gene31065:CDS | 40.0% |
| ! | TAGAGCTTGGTGGAAAGAAA+AGG | + | chr2.4:5521108-5521127 | MS.gene31065:CDS | 40.0% |
| ! | TCACCATTCATATTTGCTGC+AGG | - | chr2.4:5522405-5522424 | None:intergenic | 40.0% |
| !! | AAAAGGAATGATGGTGATGG+TGG | - | chr2.4:5522531-5522550 | None:intergenic | 40.0% |
| !! | TTAGTGTGTGTTTGGTGTTG+TGG | + | chr2.4:5520298-5520317 | MS.gene31065:intron | 40.0% |
| !!! | CTTGCAAGCATTTTGATTGG+CGG | - | chr2.4:5521513-5521532 | None:intergenic | 40.0% |
| AACCATCAGATAACTCGCGA+AGG | + | chr2.4:5521779-5521798 | MS.gene31065:CDS | 45.0% | |
| AAGTCATCTATCTGGAAGCG+AGG | + | chr2.4:5522053-5522072 | MS.gene31065:CDS | 45.0% | |
| ACTGTGCAATAGGTGTACTG+AGG | + | chr2.4:5520160-5520179 | MS.gene31065:intron | 45.0% | |
| AGGTTGCTTCTTAGCTCGAT+CGG | - | chr2.4:5521821-5521840 | None:intergenic | 45.0% | |
| AGTCATCTGATCAAGCTCGT+AGG | + | chr2.4:5520951-5520970 | MS.gene31065:CDS | 45.0% | |
| ATCGAGCTAAGAAGCAACCT+AGG | + | chr2.4:5521821-5521840 | MS.gene31065:CDS | 45.0% | |
| CAAAATCACATTGAGGTGCG+TGG | - | chr2.4:5520528-5520547 | None:intergenic | 45.0% | |
| CAAACCTATCCAGCTCGTTT+GGG | - | chr2.4:5522473-5522492 | None:intergenic | 45.0% | |
| CAGCTTCATGAGGCATAACA+GGG | - | chr2.4:5522254-5522273 | None:intergenic | 45.0% | |
| CCAGATTCATGGGAATGAAC+AGG | + | chr2.4:5521978-5521997 | MS.gene31065:CDS | 45.0% | |
| CCTGTTCATTCCCATGAATC+TGG | - | chr2.4:5521981-5522000 | None:intergenic | 45.0% | |
| CTCGTAGGAAGAAAATGTCG+AGG | + | chr2.4:5520966-5520985 | MS.gene31065:CDS | 45.0% | |
| CTCTGCTTCATACTTGGCTA+TGG | - | chr2.4:5521161-5521180 | None:intergenic | 45.0% | |
| GAGAAGGGAAAACCAGTTAG+TGG | + | chr2.4:5521070-5521089 | MS.gene31065:CDS | 45.0% | |
| GAGGCCGAAAATAACCGAAA+TGG | + | chr2.4:5521196-5521215 | MS.gene31065:CDS | 45.0% | |
| GCATTCTCTGGTTGCCTAAT+TGG | - | chr2.4:5522369-5522388 | None:intergenic | 45.0% | |
| GGAATTACCGATATGCCAAC+TGG | + | chr2.4:5521628-5521647 | MS.gene31065:CDS | 45.0% | |
| GGTGATGAAATTATCGGAGG+AGG | + | chr2.4:5522420-5522439 | MS.gene31065:CDS | 45.0% | |
| GTCGAGAAGAAGCTCTCATT+AGG | + | chr2.4:5521578-5521597 | MS.gene31065:CDS | 45.0% | |
| TAGCTGCACTCCAGATTCAT+GGG | + | chr2.4:5521968-5521987 | MS.gene31065:CDS | 45.0% | |
| TCAGCTTCATGAGGCATAAC+AGG | - | chr2.4:5522255-5522274 | None:intergenic | 45.0% | |
| TCGCACTTGAATCTACCTCA+TGG | + | chr2.4:5521373-5521392 | MS.gene31065:CDS | 45.0% | |
| TCGCGAGTTATCTGATGGTT+CGG | - | chr2.4:5521779-5521798 | None:intergenic | 45.0% | |
| TCGCTTCCAGATAGATGACT+TGG | - | chr2.4:5522054-5522073 | None:intergenic | 45.0% | |
| TCTTAGCTCGATCGGAATCT+TGG | - | chr2.4:5521813-5521832 | None:intergenic | 45.0% | |
| TGCAACTGAGAATAGTGCAG+CGG | - | chr2.4:5522228-5522247 | None:intergenic | 45.0% | |
| TTCCTTCGCGAGTTATCTGA+TGG | - | chr2.4:5521784-5521803 | None:intergenic | 45.0% | |
| TTGAGGCAGAAGATTTGGAG+AGG | + | chr2.4:5520837-5520856 | MS.gene31065:CDS | 45.0% | |
| ! | AAAATGTCGAGGGCACAAGA+TGG | + | chr2.4:5520977-5520996 | MS.gene31065:CDS | 45.0% |
| ! | AAATGTCGAGGGCACAAGAT+GGG | + | chr2.4:5520978-5520997 | MS.gene31065:CDS | 45.0% |
| ! | CACGCACCTCAATGTGATTT+TGG | + | chr2.4:5520526-5520545 | MS.gene31065:intron | 45.0% |
| ! | CCTAATTGGTTCACTGTTCG+CGG | - | chr2.4:5522355-5522374 | None:intergenic | 45.0% |
| ! | GAGGTGCCAGTTCATTTATC+AGG | + | chr2.4:5522072-5522091 | MS.gene31065:CDS | 45.0% |
| ! | GCTTTTGCCGAATGACATTG+AGG | + | chr2.4:5520349-5520368 | MS.gene31065:intron | 45.0% |
| !! | GATGTTGATGGTACCGATGA+TGG | + | chr2.4:5521703-5521722 | MS.gene31065:CDS | 45.0% |
| !!! | CTAACTGGTTTTCCCTTCTC+AGG | - | chr2.4:5521070-5521089 | None:intergenic | 45.0% |
| AACACTGTGATCCTCCTCAG+AGG | + | chr2.4:5521287-5521306 | MS.gene31065:CDS | 50.0% | |
| AACTGAGAATAGTGCAGCGG+TGG | - | chr2.4:5522225-5522244 | None:intergenic | 50.0% | |
| AAGATTTGGAGAGGCGGATG+TGG | + | chr2.4:5520846-5520865 | MS.gene31065:CDS | 50.0% | |
| AGACACATTCCCAAACGAGC+TGG | + | chr2.4:5522461-5522480 | MS.gene31065:CDS | 50.0% | |
| AGATATGGTCCCAGTCAGGA+TGG | + | chr2.4:5522300-5522319 | MS.gene31065:CDS | 50.0% | |
| AGGCAGAAGATTTGGAGAGG+CGG | + | chr2.4:5520840-5520859 | MS.gene31065:CDS | 50.0% | |
| AGGCAGCCTAGTAGCGATAA+CGG | + | chr2.4:5521598-5521617 | MS.gene31065:CDS | 50.0% | |
| CAACATCAACATCTGCAGCC+TGG | + | chr2.4:5522324-5522343 | MS.gene31065:CDS | 50.0% | |
| CACAAGATATGGTCCCAGTC+AGG | + | chr2.4:5522296-5522315 | MS.gene31065:CDS | 50.0% | |
| CACCAATCTTCATTCCCGGT+GGG | - | chr2.4:5521352-5521371 | None:intergenic | 50.0% | |
| CAGTTCATGTAACAGCACCC+GGG | + | chr2.4:5522130-5522149 | MS.gene31065:CDS | 50.0% | |
| CATTCCCAAACGAGCTGGAT+AGG | + | chr2.4:5522466-5522485 | MS.gene31065:CDS | 50.0% | |
| CCAAACCTATCCAGCTCGTT+TGG | - | chr2.4:5522474-5522493 | None:intergenic | 50.0% | |
| CCAAACGAGCTGGATAGGTT+TGG | + | chr2.4:5522471-5522490 | MS.gene31065:CDS | 50.0% | |
| CCAGTTCATGTAACAGCACC+CGG | + | chr2.4:5522129-5522148 | MS.gene31065:CDS | 50.0% | |
| CCGCCGGAAATAAGACATGA+GGG | + | chr2.4:5522027-5522046 | MS.gene31065:CDS | 50.0% | |
| CCGCGAACAGTGAACCAATT+AGG | + | chr2.4:5522352-5522371 | MS.gene31065:CDS | 50.0% | |
| CGACCACCAATCTTCATTCC+CGG | - | chr2.4:5521356-5521375 | None:intergenic | 50.0% | |
| CGCCGGAAATAAGACATGAG+GGG | + | chr2.4:5522028-5522047 | MS.gene31065:CDS | 50.0% | |
| CTGGGACCATATCTTGTGAC+TGG | - | chr2.4:5522294-5522313 | None:intergenic | 50.0% | |
| GAACGTGGTCGTTTCTTCCT+AGG | - | chr2.4:5521841-5521860 | None:intergenic | 50.0% | |
| GACGTACCGTTATCGCTACT+AGG | - | chr2.4:5521607-5521626 | None:intergenic | 50.0% | |
| GATATGGTCCCAGTCAGGAT+GGG | + | chr2.4:5522301-5522320 | MS.gene31065:CDS | 50.0% | |
| GCTTGATCAGATGACTGCCT+CGG | - | chr2.4:5520947-5520966 | None:intergenic | 50.0% | |
| GTAGCTGCACTCCAGATTCA+TGG | + | chr2.4:5521967-5521986 | MS.gene31065:CDS | 50.0% | |
| TAAGGAGGACTCTGACCATG+AGG | - | chr2.4:5521391-5521410 | None:intergenic | 50.0% | |
| TCATACTTGGCTATGGCTGC+AGG | - | chr2.4:5521154-5521173 | None:intergenic | 50.0% | |
| TGATGTTGCCCATCCTGACT+GGG | - | chr2.4:5522312-5522331 | None:intergenic | 50.0% | |
| TTGATGTTGCCCATCCTGAC+TGG | - | chr2.4:5522313-5522332 | None:intergenic | 50.0% | |
| TTGCTAGCACTACTAGCAGC+AGG | - | chr2.4:5521679-5521698 | None:intergenic | 50.0% | |
| ! | AATTGGTTCACTGTTCGCGG+CGG | - | chr2.4:5522352-5522371 | None:intergenic | 50.0% |
| ! | AGAGTGTCTTGCTATGAGCG+AGG | + | chr2.4:5521177-5521196 | MS.gene31065:CDS | 50.0% |
| ! | AGTAGCGATAACGGTACGTC+TGG | + | chr2.4:5521607-5521626 | MS.gene31065:CDS | 50.0% |
| ! | ATGGAAGTGTGCAAAGCTCG+TGG | + | chr2.4:5521025-5521044 | MS.gene31065:CDS | 50.0% |
| ! | CCTCGGCTTTTGCTTCTCTA+GGG | - | chr2.4:5520930-5520949 | None:intergenic | 50.0% |
| ! | GCAAGACAAGATGACGGCAA+AGG | + | chr2.4:5521528-5521547 | MS.gene31065:CDS | 50.0% |
| ! | GGAGGAACACCCTTTTCCAA+TGG | - | chr2.4:5521319-5521338 | None:intergenic | 50.0% |
| !! | CCCTCATGTCTTATTTCCGG+CGG | - | chr2.4:5522030-5522049 | None:intergenic | 50.0% |
| !! | GATGGTACCGATGATGGTGT+TGG | + | chr2.4:5521709-5521728 | MS.gene31065:CDS | 50.0% |
| !! | GGCCCCTCATGTCTTATTTC+CGG | - | chr2.4:5522033-5522052 | None:intergenic | 50.0% |
| !! | GTGTGTGTTTGGTGTTGTGG+AGG | + | chr2.4:5520301-5520320 | MS.gene31065:intron | 50.0% |
| !! | TGCTCTGGGAGTTCCCATTT+CGG | - | chr2.4:5521213-5521232 | None:intergenic | 50.0% |
| !!! | AGAATCTGTTTTGAGGCCGC+CGG | + | chr2.4:5522011-5522030 | MS.gene31065:CDS | 50.0% |
| ACCTGCAAGATGCAACGCTC+GGG | + | chr2.4:5521242-5521261 | MS.gene31065:CDS | 55.0% | |
| CCACCAATCTTCATTCCCGG+TGG | - | chr2.4:5521353-5521372 | None:intergenic | 55.0% | |
| CCACCGGGAATGAAGATTGG+TGG | + | chr2.4:5521350-5521369 | MS.gene31065:CDS | 55.0% | |
| CCCTAGAGAAGCAAAAGCCG+AGG | + | chr2.4:5520927-5520946 | MS.gene31065:CDS | 55.0% | |
| GACCTGCAAGATGCAACGCT+CGG | + | chr2.4:5521241-5521260 | MS.gene31065:CDS | 55.0% | |
| GAGGGGCCAAGTCATCTATC+TGG | + | chr2.4:5522045-5522064 | MS.gene31065:CDS | 55.0% | |
| GCCGCCGGAAATAAGACATG+AGG | + | chr2.4:5522026-5522045 | MS.gene31065:CDS | 55.0% | |
| GCGTTGCATCTTGCAGGTCT+TGG | - | chr2.4:5521240-5521259 | None:intergenic | 55.0% | |
| GGAAGAAACGACCACGTTCG+AGG | + | chr2.4:5521842-5521861 | MS.gene31065:CDS | 55.0% | |
| ! | ATTGGTTCACTGTTCGCGGC+GGG | - | chr2.4:5522351-5522370 | None:intergenic | 55.0% |
| ! | GCCTCGGCTTTTGCTTCTCT+AGG | - | chr2.4:5520931-5520950 | None:intergenic | 55.0% |
| !! | AAAAGGGTGTTCCTCCGCCT+TGG | + | chr2.4:5521323-5521342 | MS.gene31065:CDS | 55.0% |
| !! | CCGGGTGCTGTTACATGAAC+TGG | - | chr2.4:5522132-5522151 | None:intergenic | 55.0% |
| CAGGTCTTGGAGCGTGCTCT+GGG | - | chr2.4:5521227-5521246 | None:intergenic | 60.0% | |
| GCTGCACTTGACCTCGAACG+TGG | - | chr2.4:5521856-5521875 | None:intergenic | 60.0% | |
| GGCCCACCGGGAATGAAGAT+TGG | + | chr2.4:5521347-5521366 | MS.gene31065:CDS | 60.0% | |
| ! | ACCCGAGCGTTGCATCTTGC+AGG | - | chr2.4:5521246-5521265 | None:intergenic | 60.0% |
| GCAGGTCTTGGAGCGTGCTC+TGG | - | chr2.4:5521228-5521247 | None:intergenic | 65.0% | |
| TCATTCCCGGTGGGCCACCA+AGG | - | chr2.4:5521343-5521362 | None:intergenic | 65.0% | |
| ! | AGGGTGTTCCTCCGCCTTGG+TGG | + | chr2.4:5521326-5521345 | MS.gene31065:CDS | 65.0% |
| TCACTGTTCGCGGCGGGACC+AGG | - | chr2.4:5522345-5522364 | None:intergenic | 70.0% | |
| TTCCCGGTGGGCCACCAAGG+CGG | - | chr2.4:5521340-5521359 | None:intergenic | 70.0% | |
| ! | CCTCCGCCTTGGTGGCCCAC+CGG | + | chr2.4:5521334-5521353 | MS.gene31065:CDS | 75.0% |
| ! | CTCCGCCTTGGTGGCCCACC+GGG | + | chr2.4:5521335-5521354 | MS.gene31065:CDS | 75.0% |
| ! | CCGGTGGGCCACCAAGGCGG+AGG | - | chr2.4:5521337-5521356 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 5519826 | 5522605 | 5519826 | ID=MS.gene31065 |
| chr2.4 | mRNA | 5519826 | 5522605 | 5519826 | ID=MS.gene31065.t1;Parent=MS.gene31065 |
| chr2.4 | exon | 5519826 | 5519860 | 5519826 | ID=MS.gene31065.t1.exon1;Parent=MS.gene31065.t1 |
| chr2.4 | CDS | 5519826 | 5519860 | 5519826 | ID=cds.MS.gene31065.t1;Parent=MS.gene31065.t1 |
| chr2.4 | exon | 5520769 | 5522605 | 5520769 | ID=MS.gene31065.t1.exon2;Parent=MS.gene31065.t1 |
| chr2.4 | CDS | 5520769 | 5522605 | 5520769 | ID=cds.MS.gene31065.t1;Parent=MS.gene31065.t1 |
| Gene Sequence |
| Protein sequence |
