AlfalfaGEDB | MS.gene31082

M. sativa cultivar XinJiangDaYe / MS.gene31082

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31082.t1	XP_003597453.1	93.8	387	17	4	1	385	1	382	9.80E-202	712.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31082.t1	Q9SYB9	56.8	398	147	8	3	378	9	403	4.4e-118	426.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31082.t1	G7IUD9	93.8	387	17	4	1	385	1	382	7.1e-202	712.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31082.t1	MTR_2g098240	93.023	387	20	4	1	385	1	382	0.0	702
MS.gene31082.t1	MTR_4g065080	64.000	400	93	9	6	358	4	399	7.10e-172	486
MS.gene31082.t1	MTR_8g011780	44.663	356	161	6	9	334	12	361	5.51e-99	301
MS.gene31082.t1	MTR_7g053200	41.690	355	175	6	10	337	6	355	3.19e-90	278
MS.gene31082.t1	MTR_4g113790	38.624	378	179	7	12	339	88	462	4.00e-76	244
MS.gene31082.t1	MTR_3g010260	39.011	364	176	8	11	334	411	768	1.08e-75	250
MS.gene31082.t1	MTR_1g060790	39.889	361	173	8	12	334	467	821	4.29e-75	249
MS.gene31082.t1	MTR_2g062850	37.845	399	188	11	1	361	159	535	1.85e-74	241
MS.gene31082.t1	MTR_2g027240	38.420	367	176	9	12	334	201	561	3.61e-74	242
MS.gene31082.t1	MTR_8g446990	38.904	365	179	9	8	334	125	483	4.72e-74	239

Showing 1 to 10 of 109 entries

Previous1 2 3 4 5…11Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31082.t1	AT3G20830	57.179	397	143	6	12	385	16	408	6.18e-147	422
MS.gene31082.t1	AT1G51170	57.825	377	135	7	7	361	13	387	1.62e-145	419
MS.gene31082.t1	AT3G25250	47.550	347	155	5	12	338	12	351	9.42e-103	310
MS.gene31082.t1	AT4G13000	44.134	358	176	6	12	358	15	359	4.81e-98	296
MS.gene31082.t1	AT5G55910	39.730	370	174	9	12	338	104	467	7.66e-77	246
MS.gene31082.t1	AT5G55910	39.730	370	174	9	12	338	104	467	7.66e-77	246
MS.gene31082.t1	AT1G16440	37.405	393	205	8	12	379	108	484	9.13e-77	246
MS.gene31082.t1	AT5G58140	40.597	335	167	6	8	332	568	880	1.34e-76	254
MS.gene31082.t1	AT5G58140	40.597	335	167	6	8	332	568	880	1.34e-76	254
MS.gene31082.t1	AT5G58140	40.597	335	167	6	8	332	568	880	1.34e-76	254

Showing 1 to 10 of 177 entries

Previous1 2 3 4 5…18Next

Find 98 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGAAATGTTGACGG+AGG	0.693491	2.4:+5820059	MS.gene31082:CDS
AAACATCTGTCATCTCTCGA+CGG	0.616411	2.4:-5820102	None:intergenic
AAACGGCTCAGTTAATTGGC+TGG	0.467130	2.4:+5819356	MS.gene31082:CDS
AAATGTTGACGGAGGTTGAA+CGG	0.573624	2.4:+5820067	MS.gene31082:CDS
AACATCTGTCATCTCTCGAC+GGG	0.532395	2.4:-5820101	None:intergenic
AACGGCTCAGTTAATTGGCT+GGG	0.516902	2.4:+5819357	MS.gene31082:CDS
AACGTTCTTATTCAACAATC+TGG	0.349756	2.4:+5819541	MS.gene31082:CDS
AACTACTTTGAGTGCCATGG+TGG	0.680601	2.4:-5819230	None:intergenic
AAGAGATTAGGTTACGTTGG+AGG	0.527362	2.4:+5819997	MS.gene31082:CDS
AAGGATCCATTGAAGAGATT+AGG	0.425634	2.4:+5819985	MS.gene31082:CDS

Showing 1 to 10 of 98 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACGTTCTTATTCAACAATC+TGG	+	chr2.4:5819541-5819560	MS.gene31082:CDS	30.0%
ACGTAAACTTTCACACAAAA+CGG	+	chr2.4:5819594-5819613	MS.gene31082:CDS	30.0%
CTCAAACCACTCAAAATATT+AGG	+	chr2.4:5819151-5819170	MS.gene31082:CDS	30.0%
TTCAAGAAGCTTGAATTTGT+TGG	+	chr2.4:5819919-5819938	MS.gene31082:CDS	30.0%
TTCTTATTCTTCCCCTTAAA+CGG	-	chr2.4:5819877-5819896	None:intergenic	30.0%
AAGGATCCATTGAAGAGATT+AGG	+	chr2.4:5819985-5820004	MS.gene31082:CDS	35.0%
AATATTAGGCAAAGGAGCAA+TGG	+	chr2.4:5819165-5819184	MS.gene31082:CDS	35.0%
ACGAATCTCAACGTAAAACT+CGG	+	chr2.4:5819650-5819669	MS.gene31082:CDS	35.0%
ACGTAACCTAATCTCTTCAA+TGG	-	chr2.4:5819994-5820013	None:intergenic	35.0%
ATATTAGGCAAAGGAGCAAT+GGG	+	chr2.4:5819166-5819185	MS.gene31082:CDS	35.0%

Showing 1 to 10 of 115 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	5819103	5820260	5819103	ID=MS.gene31082
chr2.4	mRNA	5819103	5820260	5819103	ID=MS.gene31082.t1;Parent=MS.gene31082
chr2.4	exon	5819103	5820260	5819103	ID=MS.gene31082.t1.exon1;Parent=MS.gene31082.t1
chr2.4	CDS	5819103	5820260	5819103	ID=cds.MS.gene31082.t1;Parent=MS.gene31082.t1

Gene Sequence

>MS.gene31082

ATGGATTCACCAACATCACCTAGTACACAAGACCTTAACCTCAACAACCTCAAACCACTCAAAATATTAGGCAAAGGAGCAATGGGAACCGTTTTCCTCATCCAACAAAACAACAACAACGTTAACACCACCATGGCACTCAAAGTAGTTGACAAATCCTCCACACACGACGCCGAACGTCGAGCCCGTTGGGAGATCGACGTCTTATCCACTTTATCACATCCATTCCTCCCATCCATCCTGGGCAACTTTGAAACGGCTCAGTTAATTGGCTGGGCCGTTCCATATTGCTCAGGAGGTGATCTGAATGCGCTCCGTTACCAACAAACGGACCGTGTCTTCTCAACAACAGCAATCCGTTTCTACATAGCAGAGATTCTCTGCGCTCTTGAACATCTTCATACCATGGGCATAGCTTATCGTGACCTTAAACCAGAAAACGTTCTTATTCAACAATCTGGCCACGTCACGTTAACTGATTTCGATCTCTCACGTAAACTTTCACACAAAACGGTTAGAACTTTAACCGTCGAAGATAGCAGAATCCACGAATCTCAACGTAAAACTCGGCTATGGAGAATTCCACTCAATCGTCGAATTAGTCCGGTGAGTCGTCGTGGATTGAGTTTCTCCGACGGTGAAAAGTCTAACTCGTTTGTTGGCACAGCAGAGTACGTCGCCCCGGAAGTAATCCGCGGCGACGGACATGAATTCGCAGTTGATTTTTGGGCTCTTGGAATTTTAAGCTACGAGATGTTGTATGGGAAAACACCGTTTAAGGGGAAGAATAAGAAAGAAACTTTTTCAAACGTGCTTTTCAAGAAGCTTGAATTTGTTGGAAGGAAAACACCGTTAACGGATTTGATCGAACGGTTGTTAGAGAAGGATCCATTGAAGAGATTAGGTTACGTTGGAGGAGCTAATGAAATTAAGGAGCATGAGTTTTTTAGAGGGGTAAAATGGGAAATGTTGACGGAGGTTGAACGGCCGCCGTTTATCCCGTCGAGAGATGACAGATGTTTAACGGCGGGTGAATTTGGTGGAGTGGATATAAGTGATTATTTTGAAAAGCTGAAATTGCCGTCGTCCTTGCCGTCGTCGCCGTTACGGTCACCGTCGTCTGAGTTTGAAGATAGCGTTTCATTTGATGAGTTCTGA

Protein sequence

>MS.gene31082.t1

MDSPTSPSTQDLNLNNLKPLKILGKGAMGTVFLIQQNNNNVNTTMALKVVDKSSTHDAERRARWEIDVLSTLSHPFLPSILGNFETAQLIGWAVPYCSGGDLNALRYQQTDRVFSTTAIRFYIAEILCALEHLHTMGIAYRDLKPENVLIQQSGHVTLTDFDLSRKLSHKTVRTLTVEDSRIHESQRKTRLWRIPLNRRISPVSRRGLSFSDGEKSNSFVGTAEYVAPEVIRGDGHEFAVDFWALGILSYEMLYGKTPFKGKNKKETFSNVLFKKLEFVGRKTPLTDLIERLLEKDPLKRLGYVGGANEIKEHEFFRGVKWEMLTEVERPPFIPSRDDRCLTAGEFGGVDISDYFEKLKLPSSLPSSPLRSPSSEFEDSVSFDEF