AlfalfaGEDB | MS.gene31132

M. sativa cultivar XinJiangDaYe / MS.gene31132

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31132.t1	RHN76101.1	94	645	36	1	1	645	1	642	0.00E+00	1157.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31132.t1	Q9XE58	51.6	461	203	7	203	646	310	767	4.5e-131	469.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31132.t1	A0A396JHA8	94.0	645	36	1	1	645	1	642	0.0e+00	1157.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene31132.t1	TF	GRAS

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31132.t1	MTR_2g097390	93.808	646	37	1	1	646	1	643	0.0	1217
MS.gene31132.t1	MTR_2g097310	83.667	649	94	4	1	646	1	640	0.0	1088
MS.gene31132.t1	MTR_2g097350	82.743	649	102	3	1	646	1	642	0.0	1049
MS.gene31132.t1	MTR_2g097380	80.972	494	50	3	153	646	114	563	0.0	821
MS.gene31132.t1	MTR_4g064120	42.448	629	306	16	46	646	28	628	2.61e-156	464
MS.gene31132.t1	MTR_2g097410	51.678	447	198	9	213	646	302	743	2.33e-153	461
MS.gene31132.t1	MTR_4g064180	41.614	632	307	15	46	646	28	628	8.68e-152	452
MS.gene31132.t1	MTR_7g062120	52.835	388	177	3	263	646	357	742	7.86e-150	451
MS.gene31132.t1	MTR_4g064150	48.747	439	209	7	222	646	299	735	9.92e-147	443
MS.gene31132.t1	MTR_2g097467	39.297	626	331	15	50	646	51	656	1.84e-141	427

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31132.t1	AT2G29060	42.326	619	315	11	50	645	57	656	2.21e-167	494
MS.gene31132.t1	AT2G29060	41.213	643	325	13	50	645	57	693	1.21e-164	488
MS.gene31132.t1	AT1G07530	51.410	461	204	7	203	646	310	767	5.28e-163	486
MS.gene31132.t1	AT1G07520	48.322	447	215	8	211	646	90	531	8.95e-143	426
MS.gene31132.t1	AT1G07520	48.322	447	215	8	211	646	90	531	8.95e-143	426
MS.gene31132.t1	AT2G29065	41.531	614	325	16	50	646	34	630	5.98e-142	427
MS.gene31132.t1	AT1G07520	48.322	447	215	8	211	646	254	695	3.14e-141	428
MS.gene31132.t1	AT1G07520	48.322	447	215	8	211	646	255	696	3.17e-141	428
MS.gene31132.t1	AT2G37650	48.698	384	189	4	266	645	323	702	8.14e-127	391
MS.gene31132.t1	AT2G37650	48.698	384	189	4	266	645	335	714	9.83e-127	391

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Find 110 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGATGCTACAAGGT+TGG	0.509330	2.4:-6357254	MS.gene31132:CDS
AAACTATAATCACTGAAGTT+AGG	0.291953	2.4:+6358734	None:intergenic
AAAGAGCATTATTGAAAGAA+GGG	0.443472	2.4:+6358573	None:intergenic
AAATCCAAAACAGCACCTCT+CGG	0.585044	2.4:+6357657	None:intergenic
AACCCTATCACAGCCTTCAC+AGG	0.513850	2.4:+6357425	None:intergenic
AACTATAATCACTGAAGTTA+GGG	0.442010	2.4:+6358735	None:intergenic
AAGAAGTTATGAGGAAGTTG+TGG	0.533441	2.4:-6358330	MS.gene31132:CDS
AAGACACATTCTTCTCCAAC+AGG	0.450645	2.4:-6358224	MS.gene31132:CDS
AAGGAAAATTGGATGCTACA+AGG	0.606455	2.4:-6357258	MS.gene31132:CDS
AAGGCTGTGATAGGGTTCAG+AGG	0.656517	2.4:-6357419	MS.gene31132:CDS

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTATTAGGAGAAAATGG+AGG	+	chr2.4:6357716-6357735	None:intergenic	30.0%
AATCTTCTTCCATGAGAAAT+TGG	+	chr2.4:6357385-6357404	None:intergenic	30.0%
ATTCACTCTTACTTTGTTCA+TGG	+	chr2.4:6357238-6357257	None:intergenic	30.0%
ATTCATAGCATTGTTAATGG+TGG	-	chr2.4:6358730-6358749	MS.gene31132:CDS	30.0%
CTTGGTACTAAATTCACAAA+AGG	-	chr2.4:6357914-6357933	MS.gene31132:CDS	30.0%
GAAAAAGGTTGAAGTAGATT+GGG	+	chr2.4:6357744-6357763	None:intergenic	30.0%
GATAGATCTTCCAAATTCAT+TGG	-	chr2.4:6358459-6358478	MS.gene31132:CDS	30.0%
GATTGGGAAACAAAGTTATT+AGG	+	chr2.4:6357728-6357747	None:intergenic	30.0%
TAACAACAATGTTGAATGTG+AGG	-	chr2.4:6358828-6358847	MS.gene31132:CDS	30.0%
TAGTTGTATGAGTCTATATG+TGG	+	chr2.4:6357662-6357681	None:intergenic	30.0%

Showing 1 to 10 of 131 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	6357209	6359149	6357209	ID=MS.gene31132
chr2.4	mRNA	6357209	6359149	6357209	ID=MS.gene31132.t1;Parent=MS.gene31132
chr2.4	exon	6357209	6359149	6357209	ID=MS.gene31132.t1.exon1;Parent=MS.gene31132.t1
chr2.4	CDS	6357209	6359149	6357209	ID=cds.MS.gene31132.t1;Parent=MS.gene31132.t1

Gene Sequence

>MS.gene31132

ATGGACAAAGGAGTTGTTGATCCACTCCATGAACAAAGTAAGAGTGAATTCACTTCAACTGTTCTTGGTTTTATAAACAAATTTCTCATGGAAGATGATGACATAGAAGAAGACTACAATATGTTCCAACACAATGAGCATGAAGAGTCATCCAATGCTCTTGGTTATATCAACCAATTTCTCATGGAAGAAGATTTTGAAAAAGAATACACTATGTTCCAAGATTCCTATGCTCTTCAACTTACTGAGAAATCATTTCATGATGTTATTGCTCACACTCCTCTTCATCCTCTTCCTCCTACTGCTGCTGCTGCTGCTGTTACTGCTTTTACTACTACTCTTCCTTCTTCCATCCAGCATGAGTATCAACAAAACTACAACTTTGTGCATAGCCCTAACTTCAGTGATTATAGTTTAAGCAGTGATAGCACTACCTCCTTTGAACTTGATCCACATATAGACTCATACAACTACAATTATAACCCTTTTCTACTCCCAAATACTCCTCCATTTTCTCCTAATAACTTTGTTTCCCAATCTACTTCAACCTTTTTCCCTTCTTTCAATAATGCTCTTTCTCATGAGCTACTTCAGACAGAAAACTTTGAAGAAGAGCATTTTCTCAATGTGTCACAAAATGGATCAGAACAAGTGTATGTAGATGATAGCAATGAGTTATCAGAATTATTTGATAAAGTACTAGTTCTTGGTACTAAATTCACAAAAGGGCCACTTCAAAACACAAGCTTCCAGCAGAATGAAGAATTATCAAACAGATTCTATGGTTCTAGGAGACAAAGAAGTTATGAGGAAGTTGTGGATTTGAGGACACTATTGATGCTGTGTGCACAATCCATTTCTTGTAATGATATTTCAAATGCTAACCAGTTATTAAACCAGATTAAGACACATTCTTCTCCAACAGGTGATGGAACTCAAAGATTGGCACATTTCTTTGGAAATGCACTTGAAGCACGTTTAGCAGGAACTGGTTCACATATCTATAGAGCTCTATCTTCCAAGAAAAAATCTGCCGCAGATATGGTCAAAGCTTACCAAGTTTATTCATCAGCATGCCCTTTTGAAAAACTTGCAATTATGTTCTCAAACGATGCAATTTTGAATGTAGCCAAAGAAACAGAAAGTCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTCAAGTGGCTTGGTTTTATATATCGTTTATCGAAAAGATCTGGTGGGCCACCCAAGTTGAGGATCACAGGGATAGATCTTCCAAATTCATTGGAGAGAGTGAATGAAACAGGTCTTAGGCTTGCAAGTTATTGCAAACGTTTCAATGTTCCTTTTGAGTACAATGGTATTGCAAAAAATTGGGAAAGTATCAAAGTTCAGGATTTTAAGATTAGGAAAAATGAGTTTGTTGCTGTGACTTGTGTGTTTAAGTTTGAGAATCTACCTGATGAGACAGTTGTTTCGGAGAATCCGAGAGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCAAATATATTTATTCATAGCATTGTTAATGGTGGTTATGATGCACCTTTTTTTGTGACAAGGTTTAAGGAAGCTGTTTTTTATTATTCAGCATTGTTTGATATGCTTGATAACAACAATGTTGAATGTGAGGATCCTGTTAGGTTGATGTTTGAGGAAGACGTTTGGGGGAAAGATATAATGAATGTTATAGCCTGTGAAGGCTGTGATAGGGTTCAGAGGCCAGAGACATATATGCAATGGCATTCTAGGCACATGGGAAATGGGTTTAGATCTTTGAAACTGGATAAGCAGATTATAAATAAATTGAAGGGTAAGTTAAGAGATGATGCATATAATAGTGATTTTCTGTTTGAGGTGAAGGAAAATTGGATGCTACAAGGTTGGAAGGGTAGAATTCTATTTGGTTCTTCTTGTTGGATTCCAGCATAG

Protein sequence

>MS.gene31132.t1

MDKGVVDPLHEQSKSEFTSTVLGFINKFLMEDDDIEEDYNMFQHNEHEESSNALGYINQFLMEEDFEKEYTMFQDSYALQLTEKSFHDVIAHTPLHPLPPTAAAAAVTAFTTTLPSSIQHEYQQNYNFVHSPNFSDYSLSSDSTTSFELDPHIDSYNYNYNPFLLPNTPPFSPNNFVSQSTSTFFPSFNNALSHELLQTENFEEEHFLNVSQNGSEQVYVDDSNELSELFDKVLVLGTKFTKGPLQNTSFQQNEELSNRFYGSRRQRSYEEVVDLRTLLMLCAQSISCNDISNANQLLNQIKTHSSPTGDGTQRLAHFFGNALEARLAGTGSHIYRALSSKKKSAADMVKAYQVYSSACPFEKLAIMFSNDAILNVAKETESLHIIDFGVGYGFKWLGFIYRLSKRSGGPPKLRITGIDLPNSLERVNETGLRLASYCKRFNVPFEYNGIAKNWESIKVQDFKIRKNEFVAVTCVFKFENLPDETVVSENPRGAVLDLIKKANPNIFIHSIVNGGYDAPFFVTRFKEAVFYYSALFDMLDNNNVECEDPVRLMFEEDVWGKDIMNVIACEGCDRVQRPETYMQWHSRHMGNGFRSLKLDKQIINKLKGKLRDDAYNSDFLFEVKENWMLQGWKGRILFGSSCWIPA