AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31198

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31198.t1 MTR_2g096080 95.618 251 7 2 1 247 1 251 5.80e-177 486
MS.gene31198.t1 MTR_4g061823 61.009 218 78 4 33 247 29 242 9.82e-78 234
MS.gene31198.t1 MTR_4g061910 61.009 218 78 4 33 247 29 242 9.82e-78 234
MS.gene31198.t1 MTR_8g098725 47.799 159 65 7 55 202 132 283 5.39e-29 112
MS.gene31198.t1 MTR_8g098725 48.101 158 62 7 55 202 132 279 1.12e-28 110
MS.gene31198.t1 MTR_5g010120 43.860 114 43 2 87 200 130 222 5.81e-21 89.0
MS.gene31198.t1 MTR_1g073350 46.000 100 47 2 102 196 264 361 4.40e-20 88.6
MS.gene31198.t1 MTR_2g068730 74.074 54 14 0 142 195 154 207 7.00e-20 86.3
MS.gene31198.t1 MTR_1g044785 54.286 70 32 0 127 196 110 179 2.63e-19 84.0
MS.gene31198.t1 MTR_1g008220 32.867 143 79 4 62 199 150 280 3.06e-16 76.6
MS.gene31198.t1 MTR_3g091340 57.692 52 22 0 147 198 197 248 3.49e-15 73.2
MS.gene31198.t1 MTR_3g091340 57.692 52 22 0 147 198 190 241 3.76e-15 72.8
MS.gene31198.t1 MTR_3g091340 57.692 52 22 0 147 198 226 277 5.73e-15 72.8
MS.gene31198.t1 MTR_1g013450 42.188 64 37 0 140 203 244 307 3.56e-11 62.4
MS.gene31198.t1 MTR_4g128930 44.262 61 31 1 137 197 287 344 5.76e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31198.t1 AT5G59990 52.899 138 52 2 66 203 91 215 1.65e-32 119
MS.gene31198.t1 AT5G41380 42.135 178 74 6 72 243 151 305 4.74e-30 114
MS.gene31198.t1 AT1G63820 47.581 124 56 2 103 221 139 258 8.39e-28 108
MS.gene31198.t1 AT1G04500 35.632 174 81 5 34 196 171 324 4.57e-24 99.4
MS.gene31198.t1 AT1G04500 35.632 174 81 5 34 196 180 333 4.93e-24 99.4
MS.gene31198.t1 AT1G04500 35.632 174 81 5 34 196 180 333 4.93e-24 99.4
MS.gene31198.t1 AT2G33350 46.535 101 47 2 103 196 244 344 2.49e-23 97.8
MS.gene31198.t1 AT2G33350 46.535 101 47 2 103 196 255 355 2.72e-23 97.8
MS.gene31198.t1 AT2G33350 46.535 101 47 2 103 196 264 364 3.56e-23 97.4
MS.gene31198.t1 AT2G33350 46.078 102 47 3 103 196 255 356 4.45e-22 94.4
MS.gene31198.t1 AT3G12890 54.651 86 38 1 131 215 119 204 9.89e-22 90.9
MS.gene31198.t1 AT5G53420 34.884 129 68 4 68 195 70 183 2.64e-16 75.1
MS.gene31198.t1 AT5G53420 34.884 129 68 4 68 195 70 183 2.64e-16 75.1
MS.gene31198.t1 AT5G53420 34.884 129 68 4 68 195 70 183 2.64e-16 75.1
MS.gene31198.t1 AT5G53420 34.884 129 68 4 68 195 149 262 4.41e-16 75.9
MS.gene31198.t1 AT5G59990 45.872 109 46 2 66 174 91 186 3.59e-15 72.0
MS.gene31198.t1 AT4G27900 32.787 122 59 3 100 198 140 261 1.19e-14 72.0
MS.gene31198.t1 AT4G27900 32.787 122 59 3 100 198 140 261 1.19e-14 72.0
MS.gene31198.t1 AT2G24790 43.056 72 37 1 125 192 199 270 4.51e-11 62.0
MS.gene31198.t1 AT5G15850 45.283 53 29 0 147 199 282 334 5.05e-11 62.4
MS.gene31198.t1 AT5G24930 43.333 60 34 0 139 198 283 342 8.02e-11 61.6

Find 63 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATCTCCTTCTCCATTTA+TGG 0.057189 2.1:-7469113 MS.gene31198:CDS
ATTCTCACTTTCTTCTCTTC+TGG 0.076177 2.1:+7468318 None:intergenic
CGGATAGGAGGCCACGAATT+AGG 0.208419 2.1:-7467267 MS.gene31198:CDS
TTCTCACTTTCTTCTCTTCT+GGG 0.251110 2.1:+7468319 None:intergenic
TTCTTCTCTTCTGGGCTATA+TGG 0.254110 2.1:+7468327 None:intergenic
GAACTTTAACAAGAAAATTA+AGG 0.269338 2.1:-7468265 MS.gene31198:intron
GGATAGGAGGCCACGAATTA+GGG 0.287165 2.1:-7467266 MS.gene31198:CDS
AGGATGAAGAAGATGAAAAT+TGG 0.295769 2.1:-7467168 MS.gene31198:CDS
AACAAGATTTGCAGCAACTA+TGG 0.316149 2.1:+7467129 None:intergenic
CATTCCCTTCAGTACAATAA+TGG 0.321357 2.1:-7468944 MS.gene31198:CDS
TCAGGGATATGTTCCATAAA+TGG 0.329934 2.1:+7469100 None:intergenic
TTGCAGTACCGGCGATTTGC+AGG 0.339328 2.1:-7468849 MS.gene31198:intron
TTTCAAGGAAGTTCTTCCTT+TGG 0.368541 2.1:-7467097 MS.gene31198:CDS
GAGTCTAACTCATTGAAATC+AGG 0.374546 2.1:+7469082 None:intergenic
CTTGTTCATGATGAGTTTCA+AGG 0.385277 2.1:-7467112 MS.gene31198:CDS
TCCTATCCGCCAATGTCTTT+CGG 0.395899 2.1:+7467281 None:intergenic
ATGTGGCTCCACTCGACTAT+AGG 0.414777 2.1:+7467208 None:intergenic
GAAAGTAGTATGATCATAGA+AGG 0.422699 2.1:-7468366 MS.gene31198:CDS
ATTCCCTTCAGTACAATAAT+GGG 0.429789 2.1:-7468943 MS.gene31198:CDS
TGCATCAAGATTGGAGTACT+TGG 0.434559 2.1:+7468983 None:intergenic
ATGCTCCTCTGCATCAAGAT+TGG 0.438379 2.1:+7468974 None:intergenic
CATTGGTGGTGGGGAGGAAG+AGG 0.451326 2.1:-7467188 MS.gene31198:CDS
GAAGGAGATGGAAGAAGAAA+GGG 0.457613 2.1:+7469124 None:intergenic
GTGAGGAAAGTTTGCAGTAC+CGG 0.459829 2.1:-7468860 MS.gene31198:CDS
AGAAGGAGATGGAAGAAGAA+AGG 0.460726 2.1:+7469123 None:intergenic
AGAAGAAAGGGTGTTGAGAA+TGG 0.469563 2.1:+7469136 None:intergenic
GAGTGGAGCCACATTGGTGG+TGG 0.477837 2.1:-7467199 MS.gene31198:CDS
TTGAAAGATACAGAAGAAAG+AGG 0.482706 2.1:-7468296 MS.gene31198:CDS
TGTTGAGAATGGAATATTGT+TGG 0.508851 2.1:+7469147 None:intergenic
AGTGGAGCCACATTGGTGGT+GGG 0.516680 2.1:-7467198 MS.gene31198:CDS
AGCAGTGGCTATAGCAGCTA+TGG 0.525220 2.1:-7469019 MS.gene31198:CDS
GTACTGCAAACTTTCCTCAC+TGG 0.528382 2.1:+7468863 None:intergenic
GCAAAACGTCCCCTAATTCG+TGG 0.530988 2.1:+7467256 None:intergenic
AGTCTAACTCATTGAAATCA+GGG 0.536173 2.1:+7469083 None:intergenic
GAGTCCCATTATTGTACTGA+AGG 0.542232 2.1:+7468939 None:intergenic
GTCGAGTGGAGCCACATTGG+TGG 0.548825 2.1:-7467202 MS.gene31198:CDS
GCCGAAAGACATTGGCGGAT+AGG 0.550818 2.1:-7467282 MS.gene31198:CDS
ACAGAAGAAAGAGGAATCAG+AGG 0.553930 2.1:-7468287 MS.gene31198:CDS
GTATGTTTGCCGAAAGACAT+TGG 0.562441 2.1:-7467290 MS.gene31198:CDS
GAGCCACATTGGTGGTGGGG+AGG 0.566927 2.1:-7467194 MS.gene31198:CDS
GAAAGACATTGGCGGATAGG+AGG 0.570627 2.1:-7467279 MS.gene31198:CDS
TCCATAAATGGAGAAGGAGA+TGG 0.571408 2.1:+7469112 None:intergenic
GTGGAGCCACATTGGTGGTG+GGG 0.572282 2.1:-7467197 MS.gene31198:CDS
TCAACTCCGAGTTATTCAGC+TGG 0.581544 2.1:+7469041 None:intergenic
TCAGCTGGGAGAGAGTGTCT+TGG 0.586821 2.1:+7469056 None:intergenic
GTACTCCAATCTTGATGCAG+AGG 0.591070 2.1:-7468979 MS.gene31198:CDS
ATACTACTTTCACTAGACAA+TGG 0.602525 2.1:+7468378 None:intergenic
AAGATTGGAGTACTTGGAGA+AGG 0.605160 2.1:+7468989 None:intergenic
CAACTCCGAGTTATTCAGCT+GGG 0.608456 2.1:+7469042 None:intergenic
CTTCCTCCCCACCACCAATG+TGG 0.613096 2.1:+7467191 None:intergenic
ATATGTTCCATAAATGGAGA+AGG 0.614198 2.1:+7469106 None:intergenic
AGTCCCATTATTGTACTGAA+GGG 0.624751 2.1:+7468940 None:intergenic
AGTGGCTATAGCAGCTATGG+TGG 0.633412 2.1:-7469016 MS.gene31198:CDS
ATTCTAATATAATAAACCAA+AGG 0.637951 2.1:+7467081 None:intergenic
GATAGGAGGCCACGAATTAG+GGG 0.642140 2.1:-7467265 MS.gene31198:CDS
ATAGTGTACCTGCAAATCGC+CGG 0.645719 2.1:+7468841 None:intergenic
ATAGTCGAGTGGAGCCACAT+TGG 0.657395 2.1:-7467205 MS.gene31198:CDS
TCTCTCCCAGCTGAATAACT+CGG 0.662391 2.1:-7469047 MS.gene31198:CDS
ATAAGAAACCTATAGTCGAG+TGG 0.670337 2.1:-7467216 MS.gene31198:CDS
AATAACTCGGAGTTGAGCAG+TGG 0.681830 2.1:-7469034 MS.gene31198:CDS
TGTTTGCCGAAAGACATTGG+CGG 0.695673 2.1:-7467287 MS.gene31198:CDS
ACTCAGACGATGCTCCAGTG+AGG 0.708922 2.1:-7468877 MS.gene31198:CDS
GCAACATAATCATCATCACG+TGG 0.724747 2.1:-7468406 MS.gene31198:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAATTTTTAATTTTTTTG+CGG + chr2.1:7467625-7467644 None:intergenic 10.0%
!!! ATTTAAGAATGTTTTTTTAA+GGG - chr2.1:7467759-7467778 MS.gene31198:intron 10.0%
!!! GTTAAACTTTTTTTTTTTTT+TGG - chr2.1:7467495-7467514 MS.gene31198:intron 10.0%
!!! TATTTAAGAATGTTTTTTTA+AGG - chr2.1:7467758-7467777 MS.gene31198:intron 10.0%
!! TTAAAAAAACTATGAATTTG+TGG + chr2.1:7467590-7467609 None:intergenic 15.0%
!!! GAGTATATTGTTATTAATAA+GGG + chr2.1:7468595-7468614 None:intergenic 15.0%
!!! TTGAAAAACATTTTTTTTTG+CGG + chr2.1:7467653-7467672 None:intergenic 15.0%
!! AGTGATAGAAAATTTCATAA+AGG + chr2.1:7468211-7468230 None:intergenic 20.0%
!! ATAAAAAGAACAAGAAGTAA+TGG - chr2.1:7468145-7468164 MS.gene31198:intron 20.0%
!! GAACTTTAACAAGAAAATTA+AGG - chr2.1:7467985-7468004 MS.gene31198:intron 20.0%
!! GTGATAGAAAATTTCATAAA+GGG + chr2.1:7468210-7468229 None:intergenic 20.0%
!! TGATAGAAAATTTCATAAAG+GGG + chr2.1:7468209-7468228 None:intergenic 20.0%
!! TGGTGAAAAAATAAATTCAT+TGG - chr2.1:7468284-7468303 MS.gene31198:CDS 20.0%
!! TTAGTGTATGAAAGTTAAAT+TGG + chr2.1:7468118-7468137 None:intergenic 20.0%
!!! ACAGTATACATTTTTTTTGA+AGG + chr2.1:7468650-7468669 None:intergenic 20.0%
!!! GGAGTATATTGTTATTAATA+AGG + chr2.1:7468596-7468615 None:intergenic 20.0%
! AAAACTTTGTGCATTTCTTT+AGG + chr2.1:7467698-7467717 None:intergenic 25.0%
! AACTAATTACGCATGTATAA+AGG + chr2.1:7468321-7468340 None:intergenic 25.0%
! AATTTGTACTAAATAGCGTA+TGG + chr2.1:7468811-7468830 None:intergenic 25.0%
! AGTACAAATTATTGTCATAG+TGG - chr2.1:7468821-7468840 MS.gene31198:intron 25.0%
! ATACATGTACACTATGAATT+TGG + chr2.1:7468617-7468636 None:intergenic 25.0%
! CCATCATTATACTACTATTT+AGG - chr2.1:7468687-7468706 MS.gene31198:intron 25.0%
! CCTAAATAGTAGTATAATGA+TGG + chr2.1:7468690-7468709 None:intergenic 25.0%
!!! ATACTGTTTATTGATTCTAG+TGG - chr2.1:7468663-7468682 MS.gene31198:intron 25.0%
!!! TCGCATTTTAATAATTTTGG+AGG - chr2.1:7467459-7467478 MS.gene31198:intron 25.0%
!!! TGAATTTATTTTTTCACCAG+TGG + chr2.1:7468283-7468302 None:intergenic 25.0%
AACTCGATTAGAATATTGAC+CGG - chr2.1:7468717-7468736 MS.gene31198:intron 30.0%
AGGATGAAGAAGATGAAAAT+TGG - chr2.1:7469082-7469101 MS.gene31198:CDS 30.0%
AGTCTAACTCATTGAAATCA+GGG + chr2.1:7467170-7467189 None:intergenic 30.0%
ATACTACTTTCACTAGACAA+TGG + chr2.1:7467875-7467894 None:intergenic 30.0%
ATATGTTCCATAAATGGAGA+AGG + chr2.1:7467147-7467166 None:intergenic 30.0%
ATTCCCTTCAGTACAATAAT+GGG - chr2.1:7467307-7467326 MS.gene31198:intron 30.0%
CAAAGAGGAAAATAAATGCA+TGG - chr2.1:7468179-7468198 MS.gene31198:intron 30.0%
CTAAAAGACACTTCAAATCA+TGG + chr2.1:7468427-7468446 None:intergenic 30.0%
GAAAGTAGTATGATCATAGA+AGG - chr2.1:7467884-7467903 MS.gene31198:intron 30.0%
TGTTGAGAATGGAATATTGT+TGG + chr2.1:7467106-7467125 None:intergenic 30.0%
TTGAAAGATACAGAAGAAAG+AGG - chr2.1:7467954-7467973 MS.gene31198:intron 30.0%
!! AGCGTTATAGCATTTTAGTA+CGG - chr2.1:7468851-7468870 MS.gene31198:CDS 30.0%
!! CGGTCGCATTTTAATAATTT+TGG - chr2.1:7467456-7467475 MS.gene31198:intron 30.0%
!!! ATTGTTTTAGATTGCAGTTG+CGG - chr2.1:7467436-7467455 MS.gene31198:intron 30.0%
AACAAGATTTGCAGCAACTA+TGG + chr2.1:7469124-7469143 None:intergenic 35.0%
AGTCCCATTATTGTACTGAA+GGG + chr2.1:7467313-7467332 None:intergenic 35.0%
ATAAGAAACCTATAGTCGAG+TGG - chr2.1:7469034-7469053 MS.gene31198:CDS 35.0%
ATGGACAAAACTGTACAAAG+AGG - chr2.1:7468164-7468183 MS.gene31198:intron 35.0%
ATTCTCACTTTCTTCTCTTC+TGG + chr2.1:7467935-7467954 None:intergenic 35.0%
CATTCCCTTCAGTACAATAA+TGG - chr2.1:7467306-7467325 MS.gene31198:intron 35.0%
CTTGTTCATGATGAGTTTCA+AGG - chr2.1:7469138-7469157 MS.gene31198:CDS 35.0%
GAGCAATTCAGCAAAAAAAG+CGG + chr2.1:7467352-7467371 None:intergenic 35.0%
GAGGTGTGAAAATCTTCTTA+CGG - chr2.1:7468480-7468499 MS.gene31198:intron 35.0%
GAGTCTAACTCATTGAAATC+AGG + chr2.1:7467171-7467190 None:intergenic 35.0%
GCTAATTGCTATAACTGGTT+TGG + chr2.1:7468748-7468767 None:intergenic 35.0%
TAGTCAGTGTATATAGCAAC+AGG - chr2.1:7468444-7468463 MS.gene31198:intron 35.0%
TCAGGGATATGTTCCATAAA+TGG + chr2.1:7467153-7467172 None:intergenic 35.0%
TTCTCACTTTCTTCTCTTCT+GGG + chr2.1:7467934-7467953 None:intergenic 35.0%
TTGTGGTTATGCTGCAATTA+AGG + chr2.1:7467573-7467592 None:intergenic 35.0%
TTTCAAGGAAGTTCTTCCTT+TGG - chr2.1:7469153-7469172 MS.gene31198:CDS 35.0%
! AACAGGTTCAGAATTTTGTG+AGG - chr2.1:7468461-7468480 MS.gene31198:intron 35.0%
! CGTTTTTCACAGAGGATTAA+CGG - chr2.1:7467818-7467837 MS.gene31198:intron 35.0%
! GTGTTGCTAATTGCTATAAC+TGG + chr2.1:7468753-7468772 None:intergenic 35.0%
! TTGTTATTAATAAGGGCGTG+TGG + chr2.1:7468588-7468607 None:intergenic 35.0%
!! GTTATAGCATTTTAGTACGG+TGG - chr2.1:7468854-7468873 MS.gene31198:CDS 35.0%
ACAGAAGAAAGAGGAATCAG+AGG - chr2.1:7467963-7467982 MS.gene31198:intron 40.0%
AGAAGGAGATGGAAGAAGAA+AGG + chr2.1:7467130-7467149 None:intergenic 40.0%
ATTCAGCAAAAAAAGCGGAG+AGG + chr2.1:7467347-7467366 None:intergenic 40.0%
CTTGGAGAACAGAATCAATC+AGG - chr2.1:7468551-7468570 MS.gene31198:intron 40.0%
GAAGGAGATGGAAGAAGAAA+GGG + chr2.1:7467129-7467148 None:intergenic 40.0%
GAGTCCCATTATTGTACTGA+AGG + chr2.1:7467314-7467333 None:intergenic 40.0%
GCAACATAATCATCATCACG+TGG - chr2.1:7467844-7467863 MS.gene31198:intron 40.0%
GTATGTTTGCCGAAAGACAT+TGG - chr2.1:7468960-7468979 MS.gene31198:CDS 40.0%
TCCATAAATGGAGAAGGAGA+TGG + chr2.1:7467141-7467160 None:intergenic 40.0%
TCCATCTCCTTCTCCATTTA+TGG - chr2.1:7467137-7467156 MS.gene31198:CDS 40.0%
TGCATTTCTTTAGGTACGCT+TGG + chr2.1:7467689-7467708 None:intergenic 40.0%
TTCAGCAAAAAAAGCGGAGA+GGG + chr2.1:7467346-7467365 None:intergenic 40.0%
TTCTTCTCTTCTGGGCTATA+TGG + chr2.1:7467926-7467945 None:intergenic 40.0%
! AAGATTGGAGTACTTGGAGA+AGG + chr2.1:7467264-7467283 None:intergenic 40.0%
! TCATGCAACGTTTTTCACAG+AGG - chr2.1:7467810-7467829 MS.gene31198:intron 40.0%
! TGCATCAAGATTGGAGTACT+TGG + chr2.1:7467270-7467289 None:intergenic 40.0%
!! AGAAGAAAGGGTGTTGAGAA+TGG + chr2.1:7467117-7467136 None:intergenic 40.0%
!! TATAACTGGTTTGGCAACAC+CGG + chr2.1:7468739-7468758 None:intergenic 40.0%
AAAAAGCGGAGAGGGGATAA+TGG + chr2.1:7467338-7467357 None:intergenic 45.0%
AATAACTCGGAGTTGAGCAG+TGG - chr2.1:7467216-7467235 MS.gene31198:CDS 45.0%
ATAGTGTACCTGCAAATCGC+CGG + chr2.1:7467412-7467431 None:intergenic 45.0%
ATGCTCCTCTGCATCAAGAT+TGG + chr2.1:7467279-7467298 None:intergenic 45.0%
CAACTCCGAGTTATTCAGCT+GGG + chr2.1:7467211-7467230 None:intergenic 45.0%
CTCCAAGATCTTGACAGGAA+TGG + chr2.1:7468538-7468557 None:intergenic 45.0%
CTCCATTCCTGTCAAGATCT+TGG - chr2.1:7468533-7468552 MS.gene31198:intron 45.0%
CTGTTCTCCAAGATCTTGAC+AGG + chr2.1:7468543-7468562 None:intergenic 45.0%
GTACTCCAATCTTGATGCAG+AGG - chr2.1:7467271-7467290 MS.gene31198:CDS 45.0%
GTACTGCAAACTTTCCTCAC+TGG + chr2.1:7467390-7467409 None:intergenic 45.0%
GTGAGGAAAGTTTGCAGTAC+CGG - chr2.1:7467390-7467409 MS.gene31198:intron 45.0%
TCAACTCCGAGTTATTCAGC+TGG + chr2.1:7467212-7467231 None:intergenic 45.0%
TCAGCAAAAAAAGCGGAGAG+GGG + chr2.1:7467345-7467364 None:intergenic 45.0%
TCCTATCCGCCAATGTCTTT+CGG + chr2.1:7468972-7468991 None:intergenic 45.0%
TCTCTCCCAGCTGAATAACT+CGG - chr2.1:7467203-7467222 MS.gene31198:CDS 45.0%
TGTTTGCCGAAAGACATTGG+CGG - chr2.1:7468963-7468982 MS.gene31198:CDS 45.0%
AGCAGTGGCTATAGCAGCTA+TGG - chr2.1:7467231-7467250 MS.gene31198:CDS 50.0%
AGTGGCTATAGCAGCTATGG+TGG - chr2.1:7467234-7467253 MS.gene31198:CDS 50.0%
ATAGTCGAGTGGAGCCACAT+TGG - chr2.1:7469045-7469064 MS.gene31198:CDS 50.0%
ATGTGGCTCCACTCGACTAT+AGG + chr2.1:7469045-7469064 None:intergenic 50.0%
CTTATGCATGCTACCTCCAC+AGG - chr2.1:7468248-7468267 MS.gene31198:intron 50.0%
GATAGGAGGCCACGAATTAG+GGG - chr2.1:7468985-7469004 MS.gene31198:CDS 50.0%
GCAAAACGTCCCCTAATTCG+TGG + chr2.1:7468997-7469016 None:intergenic 50.0%
GGATAGGAGGCCACGAATTA+GGG - chr2.1:7468984-7469003 MS.gene31198:CDS 50.0%
! GAAAGACATTGGCGGATAGG+AGG - chr2.1:7468971-7468990 MS.gene31198:CDS 50.0%
ACTCAGACGATGCTCCAGTG+AGG - chr2.1:7467373-7467392 MS.gene31198:intron 55.0%
CGGATAGGAGGCCACGAATT+AGG - chr2.1:7468983-7469002 MS.gene31198:CDS 55.0%
! AGTGGAGCCACATTGGTGGT+GGG - chr2.1:7469052-7469071 MS.gene31198:CDS 55.0%
! GCCGAAAGACATTGGCGGAT+AGG - chr2.1:7468968-7468987 MS.gene31198:CDS 55.0%
!! TCAGCTGGGAGAGAGTGTCT+TGG + chr2.1:7467197-7467216 None:intergenic 55.0%
!! TTGCAGTACCGGCGATTTGC+AGG - chr2.1:7467401-7467420 MS.gene31198:intron 55.0%
CCACAGGTAGACACTGCCAC+TGG - chr2.1:7468264-7468283 MS.gene31198:intron 60.0%
CCAGTGGCAGTGTCTACCTG+TGG + chr2.1:7468267-7468286 None:intergenic 60.0%
CTTCCTCCCCACCACCAATG+TGG + chr2.1:7469062-7469081 None:intergenic 60.0%
GAGTGGAGCCACATTGGTGG+TGG - chr2.1:7469051-7469070 MS.gene31198:CDS 60.0%
GTCGAGTGGAGCCACATTGG+TGG - chr2.1:7469048-7469067 MS.gene31198:CDS 60.0%
GTGGCAGTGTCTACCTGTGG+AGG + chr2.1:7468264-7468283 None:intergenic 60.0%
!! CATTGGTGGTGGGGAGGAAG+AGG - chr2.1:7469062-7469081 MS.gene31198:CDS 60.0%
!! GTGGAGCCACATTGGTGGTG+GGG - chr2.1:7469053-7469072 MS.gene31198:CDS 60.0%
!! GAGCCACATTGGTGGTGGGG+AGG - chr2.1:7469056-7469075 MS.gene31198:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 7467084 7469188 7467084 ID=MS.gene31198
chr2.1 mRNA 7467084 7469188 7467084 ID=MS.gene31198.t1;Parent=MS.gene31198
chr2.1 exon 7468850 7469188 7468850 ID=MS.gene31198.t1.exon1;Parent=MS.gene31198.t1
chr2.1 CDS 7468850 7469188 7468850 ID=cds.MS.gene31198.t1;Parent=MS.gene31198.t1
chr2.1 exon 7468266 7468442 7468266 ID=MS.gene31198.t1.exon2;Parent=MS.gene31198.t1
chr2.1 CDS 7468266 7468442 7468266 ID=cds.MS.gene31198.t1;Parent=MS.gene31198.t1
chr2.1 exon 7467084 7467311 7467084 ID=MS.gene31198.t1.exon3;Parent=MS.gene31198.t1
chr2.1 CDS 7467084 7467311 7467084 ID=cds.MS.gene31198.t1;Parent=MS.gene31198.t1
Gene Sequence

>MS.gene31198

ATGTACGCACACTCTAATTCCAACAATATTCCATTCTCAACACCCTTTCTTCTTCCATCTCCTTCTCCATTTATGGAACATATCCCTGATTTCAATGAGTTAGACTCATTCCAAGACACTCTCTCCCAGCTGAATAACTCGGAGTTGAGCAGTGGCTATAGCAGCTATGGTGGATCACCTTCTCCAAGTACTCCAATCTTGATGCAGAGGAGCATTAGCAGTCATTCCCTTCAGTACAATAATGGGACTCACCATTATCCCCTCTCCGCTTTTTTTGCTGAATTGCTCGACTCAGACGATGCTCCAGTGAGGAAAGTTTGCAGTACCGGCGATTTGCAGGTACACTATGCTCATTGTTTTAGATTGCAGTTGCGGTCGCATTTTAATAATTTTGGAGGTGTGTGCGACTACGTTAAACTTTTTTTTTTTTTTGGTCTTGTCAACGAGTTAACATTTTTTTTTTATATATATAAACAATTATTTAAACCTTAATTGCAGCATAACCACAAATTCATAGTTTTTTTAAAATTTCTTACAACCGCAAAAAAATTAAAAATTTCTTACAGCCGCAAAAAAAAATGTTTTTCAAATTAAGAATCATACCAAGCGTACCTAAAGAAATGCACAAAGTTTTTTTTTTTTTATTTTAAACTTGTTATGAGTATTAAGTAAGATATTTAAGAATGTTTTTTTAAGGGTTTAATAATGTTTTTTGTTTTACTAATTTCATGCAACGTTTTTCACAGAGGATTAACGGAATGCAACATAATCATCATCACGTGGATAGTCCATTGTCTAGTGAAAGTAGTATGATCATAGAAGGTATGAGCAGAGTTTGTCCATATAGCCCAGAAGAGAAGAAAGTGAGAATTGAAAGATACAGAAGAAAGAGGAATCAGAGGAACTTTAACAAGAAAATTAAGGTTAACTCTTGTACAAATACACACATGACACACTTCAATTTTGTTATATTTGTCTCATTTTACTAGTTTTCTATGTCTTGCTTGATGAATTAATTTAAAAGTGCTGCACCAATTTAACTTTCATACACTAATTTAAATATAAAAAGAACAAGAAGTAATGGACAAAACTGTACAAAGAGGAAAATAAATGCATGGTAGACCCCTTTATGAAATTTTCTATCACTCAAATCATATATAGAGACTTATGCATGCTACCTCCACAGGTAGACACTGCCACTGGTGAAAAAATAAATTCATTGGAAAATATCTTACCTTTATACATGCGTAATTAGTTATGATTTGTTGACAATGTAAAACTTTTTACTAACAATATGTATCAAAATTAAATTCTACATGTAATATGACAAGAATTTGTTTCCATGATTTGAAGTGTCTTTTAGTCAGTGTATATAGCAACAGGTTCAGAATTTTGTGAGGTGTGAAAATCTTCTTACGGATTTGTCTTATTCTCTAATGTAACTGCTAACTCCATTCCTGTCAAGATCTTGGAGAACAGAATCAATCAGGAATCTTATTAGCCACACGCCCTTATTAATAACAATATACTCCAAATTCATAGTGTACATGTATACTTTTTATTCCTTCAAAAAAAATGTATACTGTTTATTGATTCTAGTGGTCCATCATTATACTACTATTTAGGTATGAAAAACTCGATTAGAATATTGACCGGTGTTGCCAAACCAGTTATAGCAATTAGCAACACTATTAGCAGTATTTGAACAAATTGTTATTGTTGCTCCATACGCTATTTAGTACAAATTATTGTCATAGTGGCTATAACAGCGTTATAGCATTTTAGTACGGTGGAATTTGAACAAACATCTATTTTTCGCAATTCACGCAATTGACAACACTTTTATTGACTAATTTTTATTTTTTGTTATGAATCAGTATGTTTGCCGAAAGACATTGGCGGATAGGAGGCCACGAATTAGGGGACGTTTTGCGAGAAATGATGAAATTGATAAGAAACCTATAGTCGAGTGGAGCCACATTGGTGGTGGGGAGGAAGAGGATGAAGAAGATGAAAATTGGAATAATATCTTTAATTCCATAGTTGCTGCAAATCTTGTTCATGATGAGTTTCAAGGAAGTTCTTCCTTTGGTTTATTATATTAG
Protein sequence

>MS.gene31198.t1

MYAHSNSNNIPFSTPFLLPSPSPFMEHIPDFNELDSFQDTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQYNNGTHHYPLSAFFAELLDSDDAPVRKVCSTGDLQRINGMQHNHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRRKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEEDEEDENWNNIFNSIVAANLVHDEFQGSSSFGLLY