AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31315

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31315.t1 MTR_2g093810 92.767 318 23 0 1 318 1 318 0.0 606
MS.gene31315.t1 MTR_7g100990 51.034 290 131 3 10 298 7 286 2.34e-94 283
MS.gene31315.t1 MTR_5g041940 67.647 170 53 1 14 183 3 170 1.85e-83 253
MS.gene31315.t1 MTR_4g081870 66.474 173 56 1 8 180 3 173 2.35e-81 248
MS.gene31315.t1 MTR_2g080010 49.206 252 83 6 14 258 15 228 3.15e-80 248
MS.gene31315.t1 MTR_7g085220 66.857 175 49 4 14 180 8 181 3.10e-79 244
MS.gene31315.t1 MTR_4g089135 64.407 177 44 2 14 171 15 191 6.99e-79 244
MS.gene31315.t1 MTR_2157s0010 67.081 161 47 2 14 168 8 168 1.44e-76 235
MS.gene31315.t1 MTR_3g088110 62.130 169 60 2 10 178 3 167 2.20e-72 225
MS.gene31315.t1 MTR_8g094580 55.135 185 73 2 14 191 7 188 1.58e-70 221
MS.gene31315.t1 MTR_2g079990 61.585 164 57 3 10 173 12 169 5.40e-69 219
MS.gene31315.t1 MTR_8g059170 61.494 174 58 4 10 183 10 174 2.06e-67 214
MS.gene31315.t1 MTR_3g096920 60.645 155 57 2 14 168 7 157 1.08e-64 206
MS.gene31315.t1 MTR_2g079990 53.723 188 61 3 10 173 12 197 1.94e-64 208
MS.gene31315.t1 MTR_5g040420 51.744 172 79 2 1 168 1 172 2.54e-59 195
MS.gene31315.t1 MTR_3g096920 48.691 191 59 2 14 168 7 194 2.60e-58 191
MS.gene31315.t1 MTR_8g467490 51.445 173 79 2 1 168 1 173 3.91e-57 189
MS.gene31315.t1 MTR_6g011860 50.000 178 83 2 16 188 17 193 7.71e-56 186
MS.gene31315.t1 MTR_3g109340 46.305 203 102 4 4 205 13 209 1.14e-53 179
MS.gene31315.t1 MTR_6g477900 49.405 168 77 3 14 179 6 167 3.62e-53 174
MS.gene31315.t1 MTR_3g109340 46.305 203 101 4 4 205 13 208 3.86e-53 178
MS.gene31315.t1 MTR_1g008740 46.635 208 89 5 1 204 15 204 8.63e-53 177
MS.gene31315.t1 MTR_1g008740 46.635 208 89 5 1 204 1 190 1.03e-52 177
MS.gene31315.t1 MTR_2g078700 54.839 155 68 1 14 168 23 175 1.84e-52 177
MS.gene31315.t1 MTR_6g012670 50.595 168 79 2 8 175 14 177 3.21e-52 174
MS.gene31315.t1 MTR_2g064090 47.368 171 83 3 13 181 5 170 3.32e-52 175
MS.gene31315.t1 MTR_6g084430 51.875 160 69 2 14 173 5 156 3.84e-52 174
MS.gene31315.t1 MTR_7g005280 54.605 152 60 2 14 165 15 157 1.22e-51 171
MS.gene31315.t1 MTR_5g076850 54.037 161 60 4 13 168 5 156 5.35e-51 178
MS.gene31315.t1 MTR_4g108760 51.875 160 63 3 14 168 17 167 1.04e-50 172
MS.gene31315.t1 MTR_3g435150 50.909 165 77 3 9 173 11 171 3.91e-50 169
MS.gene31315.t1 MTR_4g134460 53.333 150 63 3 16 165 56 198 8.60e-50 171
MS.gene31315.t1 MTR_2g062730 46.032 189 90 4 13 198 9 188 2.38e-49 168
MS.gene31315.t1 MTR_7g085260 49.112 169 82 3 7 173 10 176 5.33e-49 168
MS.gene31315.t1 MTR_1g069805 45.455 176 88 2 13 188 9 176 1.40e-48 164
MS.gene31315.t1 MTR_5g090970 48.571 175 84 3 16 184 20 194 2.06e-48 164
MS.gene31315.t1 MTR_8g076110 45.930 172 82 3 15 183 7 170 2.61e-48 164
MS.gene31315.t1 MTR_8g024480 47.929 169 78 3 15 175 16 182 4.72e-48 167
MS.gene31315.t1 MTR_4g036030 48.538 171 71 5 15 178 8 168 1.11e-47 163
MS.gene31315.t1 MTR_3g070030 51.316 152 71 2 14 165 19 167 1.38e-47 163
MS.gene31315.t1 MTR_8g099750 51.948 154 69 3 14 165 14 164 1.43e-47 159
MS.gene31315.t1 MTR_4g035590 50.000 164 70 3 8 168 2 156 3.63e-47 162
MS.gene31315.t1 MTR_3g064580 50.633 158 71 3 13 168 5 157 3.97e-47 168
MS.gene31315.t1 MTR_4g098630 45.810 179 88 4 13 187 5 178 6.01e-47 160
MS.gene31315.t1 MTR_6g032770 47.337 169 83 3 1 165 1 167 1.08e-46 162
MS.gene31315.t1 MTR_7g097090 49.020 153 70 2 13 165 9 153 1.62e-46 159
MS.gene31315.t1 MTR_4g075980 45.882 170 82 2 16 184 17 177 2.36e-46 159
MS.gene31315.t1 MTR_8g094580 53.676 136 53 2 63 191 2 134 2.68e-46 156
MS.gene31315.t1 MTR_5g021710 49.045 157 69 3 15 168 9 157 3.27e-46 160
MS.gene31315.t1 MTR_5g090970 47.429 175 85 4 16 184 20 193 4.39e-46 158
MS.gene31315.t1 MTR_3g116070 53.731 134 61 1 9 141 18 151 8.66e-46 159
MS.gene31315.t1 MTR_1g096430 49.045 157 69 3 15 168 8 156 1.00e-45 158
MS.gene31315.t1 MTR_2g068880 46.988 166 78 4 16 171 24 189 1.47e-45 157
MS.gene31315.t1 MTR_2g068920 45.833 168 81 4 16 173 23 190 2.00e-45 156
MS.gene31315.t1 MTR_4g101680 44.186 172 84 4 15 182 8 171 3.56e-45 157
MS.gene31315.t1 MTR_5g014300 47.273 165 69 4 13 168 5 160 1.01e-44 155
MS.gene31315.t1 MTR_5g012080 48.428 159 69 4 15 168 8 158 1.09e-44 155
MS.gene31315.t1 MTR_2g064470 47.368 152 73 3 14 165 11 155 2.07e-44 154
MS.gene31315.t1 MTR_7g011120 42.347 196 98 3 14 196 8 201 1.15e-43 152
MS.gene31315.t1 MTR_3g098810 48.538 171 75 5 14 173 14 182 1.79e-43 149
MS.gene31315.t1 MTR_7g011130 41.667 192 91 3 14 186 19 208 1.94e-42 150
MS.gene31315.t1 MTR_2g086880 44.186 172 82 3 16 186 20 178 3.45e-42 152
MS.gene31315.t1 MTR_2g086880 44.186 172 82 3 16 186 20 178 5.84e-42 153
MS.gene31315.t1 MTR_1g097300 52.344 128 57 2 16 141 21 146 3.78e-41 150
MS.gene31315.t1 MTR_3g096140 45.161 155 77 4 16 168 9 157 8.92e-41 144
MS.gene31315.t1 MTR_3g098810 52.555 137 61 2 14 148 14 148 2.25e-40 139
MS.gene31315.t1 MTR_1g090720 46.875 160 79 3 13 168 41 198 2.45e-40 147
MS.gene31315.t1 MTR_5g069030 45.506 178 84 6 14 185 25 195 3.60e-40 149
MS.gene31315.t1 MTR_1g090723 45.860 157 74 5 16 168 10 159 3.79e-40 149
MS.gene31315.t1 MTR_3g096140 45.161 155 77 4 16 168 9 157 3.79e-40 144
MS.gene31315.t1 MTR_3g093050 45.810 179 84 6 13 185 21 192 5.92e-40 148
MS.gene31315.t1 MTR_3g093050 45.810 179 84 6 13 185 21 192 5.99e-40 147
MS.gene31315.t1 MTR_1g090723 45.223 157 74 5 16 168 10 158 2.40e-39 146
MS.gene31315.t1 MTR_1g090723 45.223 157 74 5 16 168 10 158 2.95e-39 146
MS.gene31315.t1 MTR_3g093040 41.622 185 89 5 10 185 104 278 1.38e-38 139
MS.gene31315.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 6.09e-38 138
MS.gene31315.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 9.76e-38 139
MS.gene31315.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 1.27e-37 139
MS.gene31315.t1 MTR_3g070040 41.489 188 96 4 14 193 8 189 1.68e-37 136
MS.gene31315.t1 MTR_0036s0150 43.590 156 78 4 16 168 7 155 1.15e-36 138
MS.gene31315.t1 MTR_8g093580 42.581 155 81 4 16 168 8 156 2.40e-36 136
MS.gene31315.t1 MTR_8g023840 44.937 158 74 5 11 165 8 155 1.11e-35 133
MS.gene31315.t1 MTR_4g052620 45.283 159 76 5 14 165 5 159 1.21e-35 130
MS.gene31315.t1 MTR_7g105170 40.719 167 91 4 14 173 4 169 1.48e-34 127
MS.gene31315.t1 MTR_4g094302 37.580 157 88 2 14 168 11 159 2.69e-33 121
MS.gene31315.t1 MTR_2g086690 42.767 159 79 5 15 165 5 159 2.56e-32 120
MS.gene31315.t1 MTR_4g094302 40.625 128 68 1 14 141 11 130 4.30e-32 117
MS.gene31315.t1 MTR_8g023860 42.857 154 75 5 15 165 13 156 1.64e-31 122
MS.gene31315.t1 MTR_3g096140 42.254 142 74 4 29 168 1 136 4.11e-31 119
MS.gene31315.t1 MTR_8g023900 41.463 164 78 6 13 168 187 340 6.47e-31 121
MS.gene31315.t1 MTR_8g023900 38.372 172 86 6 14 178 12 170 1.15e-29 118
MS.gene31315.t1 MTR_8g023930 37.778 180 98 5 14 180 24 202 1.44e-30 120
MS.gene31315.t1 MTR_8g093790 37.654 162 75 5 7 168 3 138 3.70e-27 105
MS.gene31315.t1 MTR_7g070140 56.000 75 33 0 67 141 17 91 3.08e-23 93.6
MS.gene31315.t1 MTR_3g096400 36.585 164 80 8 14 165 7 158 8.97e-23 94.4
MS.gene31315.t1 MTR_8g023880 34.228 149 78 5 9 140 2 147 5.06e-20 88.2
MS.gene31315.t1 MTR_7g083330 27.711 166 112 5 8 169 12 173 1.23e-15 74.3
MS.gene31315.t1 MTR_7g083360 31.250 128 82 4 14 139 10 133 1.63e-15 73.2
MS.gene31315.t1 MTR_7g070150 45.763 59 25 1 113 171 9 60 5.60e-12 61.6
MS.gene31315.t1 MTR_1g045470 32.258 155 84 7 22 166 13 156 6.92e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31315.t1 AT1G69490 67.059 170 54 1 10 179 5 172 2.07e-81 248
MS.gene31315.t1 AT1G61110 68.235 170 37 3 14 171 16 180 9.47e-80 245
MS.gene31315.t1 AT3G15510 61.988 171 58 1 18 181 21 191 1.40e-76 239
MS.gene31315.t1 AT1G77450 59.551 178 68 2 8 185 4 177 4.22e-74 229
MS.gene31315.t1 AT3G04070 55.825 206 75 5 13 206 9 210 9.05e-74 231
MS.gene31315.t1 AT3G04070 53.604 222 71 6 13 206 9 226 3.49e-73 230
MS.gene31315.t1 AT1G01720 67.097 155 48 1 14 168 7 158 2.48e-72 225
MS.gene31315.t1 AT5G08790 59.429 175 67 2 9 182 2 173 2.79e-70 220
MS.gene31315.t1 AT1G52880 70.064 157 41 3 18 168 21 177 3.16e-69 218
MS.gene31315.t1 AT5G63790 59.218 179 66 4 9 184 45 219 1.42e-68 216
MS.gene31315.t1 AT3G15500 59.763 169 62 3 10 178 10 172 1.87e-68 216
MS.gene31315.t1 AT5G63790 59.218 179 66 4 9 184 55 229 2.29e-68 216
MS.gene31315.t1 AT4G27410 60.377 159 57 3 10 168 10 162 5.41e-68 214
MS.gene31315.t1 AT1G52890 60.119 168 61 3 1 168 1 162 9.57e-68 214
MS.gene31315.t1 AT4G27410 54.545 176 57 4 10 168 10 179 1.64e-63 204
MS.gene31315.t1 AT1G26870 46.000 200 101 2 16 208 18 217 6.53e-57 189
MS.gene31315.t1 AT2G24430 51.176 170 78 2 4 173 6 170 5.81e-55 181
MS.gene31315.t1 AT2G24430 51.176 170 78 2 4 173 6 170 5.81e-55 181
MS.gene31315.t1 AT1G76420 51.534 163 74 1 14 176 22 179 8.08e-55 182
MS.gene31315.t1 AT5G39820 41.905 210 105 2 16 208 22 231 1.57e-53 178
MS.gene31315.t1 AT5G07680 54.839 155 66 3 14 168 17 167 2.39e-53 178
MS.gene31315.t1 AT5G07680 54.839 155 66 3 14 168 3 153 2.50e-53 177
MS.gene31315.t1 AT5G53950 52.761 163 74 2 6 168 10 169 4.07e-53 178
MS.gene31315.t1 AT5G13180 55.263 152 60 3 14 165 14 157 1.14e-52 174
MS.gene31315.t1 AT5G39610 52.500 160 62 3 14 168 20 170 1.89e-52 174
MS.gene31315.t1 AT3G04060 52.439 164 75 3 5 168 11 171 3.41e-52 175
MS.gene31315.t1 AT5G61430 51.852 162 74 3 14 175 16 173 7.36e-52 174
MS.gene31315.t1 AT3G15170 53.642 151 68 1 15 165 21 169 1.35e-51 172
MS.gene31315.t1 AT1G65910 50.568 176 78 5 13 186 5 173 5.49e-51 178
MS.gene31315.t1 AT3G17730 52.229 157 67 4 14 168 6 156 7.43e-51 169
MS.gene31315.t1 AT5G18270 51.534 163 76 3 6 168 13 172 7.82e-51 171
MS.gene31315.t1 AT3G29035 60.156 128 49 1 14 141 24 149 7.91e-51 171
MS.gene31315.t1 AT2G02450 54.667 150 61 3 16 165 53 195 1.18e-50 172
MS.gene31315.t1 AT2G02450 54.667 150 61 3 16 165 53 195 1.22e-50 173
MS.gene31315.t1 AT3G03200 51.875 160 66 4 13 168 5 157 1.58e-50 174
MS.gene31315.t1 AT5G18270 51.534 163 76 3 6 168 13 172 1.68e-50 171
MS.gene31315.t1 AT2G33480 53.896 154 58 4 14 165 15 157 2.45e-50 168
MS.gene31315.t1 AT2G33480 53.896 154 56 4 14 165 15 155 3.00e-50 168
MS.gene31315.t1 AT3G18400 50.000 160 73 2 14 173 5 157 3.89e-50 169
MS.gene31315.t1 AT2G17040 43.602 211 99 5 16 220 8 204 9.63e-50 167
MS.gene31315.t1 AT2G43000 48.428 159 77 2 16 174 20 173 1.29e-49 166
MS.gene31315.t1 AT5G46590 50.000 178 78 5 14 187 6 176 1.38e-49 167
MS.gene31315.t1 AT5G17260 51.250 160 67 4 13 168 5 157 1.45e-49 172
MS.gene31315.t1 AT4G10350 51.235 162 70 3 7 165 2 157 3.55e-48 165
MS.gene31315.t1 AT1G79580 50.314 159 68 3 13 168 16 166 4.00e-48 165
MS.gene31315.t1 AT1G79580 50.314 159 68 3 13 168 16 166 4.00e-48 165
MS.gene31315.t1 AT1G79580 50.314 159 68 3 13 168 16 166 4.00e-48 165
MS.gene31315.t1 AT1G79580 50.314 159 68 3 13 168 16 166 4.00e-48 165
MS.gene31315.t1 AT1G79580 50.314 159 68 3 13 168 16 166 4.00e-48 165
MS.gene31315.t1 AT4G17980 50.920 163 66 5 13 168 5 160 1.24e-47 161
MS.gene31315.t1 AT4G17980 50.920 163 66 5 13 168 5 160 1.47e-47 162
MS.gene31315.t1 AT1G33280 51.220 164 68 3 8 168 2 156 1.51e-47 162
MS.gene31315.t1 AT1G71930 48.428 159 71 3 13 168 8 158 3.22e-47 162
MS.gene31315.t1 AT1G71930 48.428 159 71 3 13 168 8 158 3.22e-47 162
MS.gene31315.t1 AT4G36160 37.847 288 150 8 13 290 13 281 1.09e-46 162
MS.gene31315.t1 AT4G36160 37.847 288 150 8 13 290 9 277 1.23e-46 162
MS.gene31315.t1 AT4G36160 37.847 288 150 8 13 290 9 277 1.23e-46 162
MS.gene31315.t1 AT1G56010 46.795 156 79 3 14 168 19 171 3.67e-46 159
MS.gene31315.t1 AT2G18060 47.799 159 72 3 13 168 8 158 4.92e-46 160
MS.gene31315.t1 AT2G18060 47.799 159 72 3 13 168 8 158 4.92e-46 160
MS.gene31315.t1 AT5G46590 54.815 135 58 2 14 146 6 139 5.16e-46 157
MS.gene31315.t1 AT4G28530 47.093 172 67 3 14 169 10 173 1.14e-45 158
MS.gene31315.t1 AT3G10480 47.826 161 77 3 10 168 23 178 1.30e-45 160
MS.gene31315.t1 AT5G66300 48.428 159 72 3 13 168 11 162 1.33e-45 157
MS.gene31315.t1 AT1G12260 45.087 173 83 4 15 183 8 172 1.60e-45 158
MS.gene31315.t1 AT1G54330 48.101 158 71 3 13 168 5 153 2.65e-45 156
MS.gene31315.t1 AT3G10480 48.447 161 75 4 10 168 23 177 3.82e-45 159
MS.gene31315.t1 AT1G12260 49.351 154 67 3 15 165 8 153 4.01e-45 158
MS.gene31315.t1 AT1G32770 47.590 166 75 5 15 170 17 180 7.11e-45 156
MS.gene31315.t1 AT5G62380 46.341 164 77 3 14 174 7 162 1.12e-44 155
MS.gene31315.t1 AT5G62380 46.341 164 77 3 14 174 7 162 1.12e-44 155
MS.gene31315.t1 AT3G10490 46.835 158 77 3 13 168 26 178 1.26e-44 152
MS.gene31315.t1 AT3G12977 45.806 155 79 2 14 168 18 167 1.30e-44 154
MS.gene31315.t1 AT1G62700 44.571 175 84 4 15 184 8 174 1.45e-44 157
MS.gene31315.t1 AT1G62700 44.571 175 84 4 15 184 8 174 1.45e-44 157
MS.gene31315.t1 AT1G32510 48.447 161 69 4 14 165 6 161 4.33e-44 152
MS.gene31315.t1 AT2G46770 43.646 181 84 5 14 182 16 190 4.94e-44 154
MS.gene31315.t1 AT3G10500 46.951 164 79 3 7 168 2 159 2.48e-43 156
MS.gene31315.t1 AT3G10490 46.835 158 77 3 13 168 26 178 3.92e-43 154
MS.gene31315.t1 AT3G10480 40.722 194 75 4 10 168 23 211 5.22e-42 152
MS.gene31315.t1 AT1G33060 50.000 158 71 4 13 168 23 174 5.87e-42 154
MS.gene31315.t1 AT1G33060 50.000 158 71 4 13 168 23 174 6.43e-42 154
MS.gene31315.t1 AT1G34180 52.344 128 57 2 16 141 18 143 1.19e-41 150
MS.gene31315.t1 AT3G61910 42.614 176 83 4 14 175 11 182 2.19e-41 147
MS.gene31315.t1 AT4G35580 53.676 136 59 2 7 140 2 135 2.22e-41 151
MS.gene31315.t1 AT4G35580 53.676 136 59 2 7 140 2 135 2.23e-41 151
MS.gene31315.t1 AT4G35580 53.676 136 59 2 7 140 2 135 2.61e-41 150
MS.gene31315.t1 AT5G24590 44.828 174 87 4 13 183 12 179 3.56e-41 149
MS.gene31315.t1 AT5G04410 45.122 164 82 3 7 168 2 159 3.67e-41 150
MS.gene31315.t1 AT1G34180 52.344 128 57 2 16 141 18 143 5.43e-41 150
MS.gene31315.t1 AT1G34190 50.781 128 59 2 16 141 18 143 1.19e-40 149
MS.gene31315.t1 AT3G12910 47.826 161 72 5 16 165 23 182 7.18e-40 142
MS.gene31315.t1 AT1G34180 47.857 140 57 3 16 141 18 155 1.49e-38 142
MS.gene31315.t1 AT3G49530 48.872 133 65 2 13 143 12 143 1.49e-38 141
MS.gene31315.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.83e-38 142
MS.gene31315.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.83e-38 142
MS.gene31315.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.83e-38 142
MS.gene31315.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.83e-38 142
MS.gene31315.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.83e-38 142
MS.gene31315.t1 AT3G49530 48.872 133 65 2 13 143 12 143 1.83e-38 142
MS.gene31315.t1 AT2G27300 34.934 229 127 6 16 232 16 234 3.50e-38 138
MS.gene31315.t1 AT3G44290 38.636 176 91 4 16 190 16 175 4.23e-38 135
MS.gene31315.t1 AT1G34180 47.857 140 57 3 16 141 18 155 5.49e-38 142
MS.gene31315.t1 AT5G22290 42.614 176 83 6 13 186 20 179 1.52e-37 137
MS.gene31315.t1 AT3G44290 38.983 177 89 5 16 190 16 175 4.41e-37 135
MS.gene31315.t1 AT5G64060 40.127 157 86 3 14 168 6 156 2.19e-35 131
MS.gene31315.t1 AT1G32870 45.181 166 83 4 8 171 4 163 1.29e-34 132
MS.gene31315.t1 AT1G32870 45.181 166 83 4 8 171 4 163 1.41e-34 132
MS.gene31315.t1 AT1G32870 45.181 166 83 4 8 171 40 199 1.89e-34 132
MS.gene31315.t1 AT5G04395 41.611 149 73 2 8 142 22 170 1.98e-34 124
MS.gene31315.t1 AT5G64530 36.517 178 86 4 14 181 3 163 4.47e-32 118
MS.gene31315.t1 AT5G22380 41.290 155 82 4 17 165 8 159 7.25e-32 119
MS.gene31315.t1 AT5G64530 43.077 130 62 2 14 143 3 120 1.48e-31 116
MS.gene31315.t1 AT3G44350 43.165 139 69 4 17 148 8 143 6.43e-30 112
MS.gene31315.t1 AT4G28530 38.953 172 44 4 14 169 10 136 1.31e-29 115
MS.gene31315.t1 AT5G61430 50.450 111 51 3 65 175 4 110 1.42e-29 114
MS.gene31315.t1 AT3G44350 38.710 186 93 8 17 192 8 182 1.55e-29 113
MS.gene31315.t1 AT4G01550 40.113 177 92 6 17 189 7 173 1.40e-28 114
MS.gene31315.t1 AT1G56010 49.057 106 51 2 63 168 2 104 1.63e-28 110
MS.gene31315.t1 AT3G12977 50.485 103 46 2 66 168 17 114 5.50e-28 108
MS.gene31315.t1 AT2G33480 53.465 101 37 3 67 165 8 100 5.95e-28 108
MS.gene31315.t1 AT4G10350 54.545 99 39 2 67 165 18 110 9.49e-28 109
MS.gene31315.t1 AT4G01520 40.625 160 81 6 15 169 5 155 1.86e-27 109
MS.gene31315.t1 AT4G01540 40.506 158 80 6 17 169 7 155 1.45e-26 108
MS.gene31315.t1 AT4G01540 40.506 158 80 6 17 169 7 155 1.73e-26 109
MS.gene31315.t1 AT4G01540 40.506 158 80 6 17 169 7 155 1.78e-26 108
MS.gene31315.t1 AT4G01540 40.506 158 80 6 17 169 7 155 1.85e-26 108
MS.gene31315.t1 AT3G04420 35.849 159 87 4 15 169 4 151 1.24e-25 103
MS.gene31315.t1 AT3G04420 35.849 159 87 4 15 169 4 151 2.14e-25 104
MS.gene31315.t1 AT1G02230 39.231 130 71 4 15 139 4 130 1.47e-23 99.8
MS.gene31315.t1 AT5G14000 38.931 131 74 4 14 142 15 141 3.54e-21 88.6
MS.gene31315.t1 AT2G43000 45.455 99 49 2 76 174 2 95 3.55e-21 89.7
MS.gene31315.t1 AT1G01010 33.696 184 97 6 17 188 6 176 5.17e-21 93.2
MS.gene31315.t1 AT5G14000 38.931 131 74 4 14 142 15 141 9.89e-21 89.0
MS.gene31315.t1 AT1G02250 33.750 160 90 6 15 169 4 152 1.23e-20 91.7
MS.gene31315.t1 AT1G02220 37.984 129 71 4 15 139 4 127 8.95e-20 89.4
MS.gene31315.t1 AT3G56530 35.507 138 78 4 8 139 46 178 1.96e-17 82.0
MS.gene31315.t1 AT3G10490 47.561 82 38 2 87 168 2 78 1.48e-16 79.7
MS.gene31315.t1 AT3G10490 47.561 82 38 2 87 168 2 78 1.48e-16 79.7
MS.gene31315.t1 AT3G55210 30.178 169 92 6 12 165 9 166 6.63e-15 73.9
MS.gene31315.t1 AT5G50820 31.618 136 81 5 14 146 17 143 1.24e-13 68.9
MS.gene31315.t1 AT2G18060 45.455 77 34 2 92 168 2 70 1.60e-13 70.1
MS.gene31315.t1 AT5G22290 49.367 79 27 3 93 170 2 68 1.74e-13 69.3
MS.gene31315.t1 AT1G28470 33.562 146 76 8 13 141 76 217 4.58e-13 69.3
MS.gene31315.t1 AT3G04430 39.423 104 59 4 20 121 6 107 1.35e-11 63.2

Find 65 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCACATGAAGAAATTAT+TGG 0.169206 2.4:-8239257 None:intergenic
TCACCCCTTGGTAGGTTTAA+TGG 0.204888 2.4:-8239618 None:intergenic
CCTGAAGCTGCTGTTCTATT+TGG 0.206711 2.4:-8239206 None:intergenic
ATGTCGGGTTTGAGCGTTAA+TGG 0.254915 2.4:+8239756 MS.gene31315:CDS
TGGAAAAGTGTAATTTGATT+TGG 0.281222 2.4:-8238869 None:intergenic
GGTAGGTTTAATGGTATGTT+TGG 0.328988 2.4:-8239609 None:intergenic
GAACAGCAGCTTCAGGATAC+TGG 0.343249 2.4:+8239213 MS.gene31315:CDS
TTATGTCGGGTTCGAAATAA+AGG 0.361202 2.4:+8239540 MS.gene31315:CDS
GAAAGTATCCGAATGGAATA+AGG 0.369597 2.4:+8239183 MS.gene31315:CDS
TTATTCCATTCGGATACTTT+CGG 0.372999 2.4:-8239181 None:intergenic
TAGATGGAGGGACAACAAAA+TGG 0.376134 2.4:+8238844 None:intergenic
GATTGAAAGTTCACGTTTGT+AGG 0.387582 2.4:-8239648 None:intergenic
CCAAATAGAACAGCAGCTTC+AGG 0.393395 2.4:+8239206 MS.gene31315:CDS
CTTTGTTTGGTGAGGAAGAA+TGG 0.399941 2.4:+8239138 MS.gene31315:CDS
TTCGGATACTTTCGGTCTCT+CGG 0.404947 2.4:-8239173 None:intergenic
CTATTTGGCCTTATTCCATT+CGG 0.408414 2.4:-8239191 None:intergenic
TCAGGATACTGGAAGGCAAC+TGG 0.417107 2.4:+8239224 MS.gene31315:CDS
ATAACTTCAGTTTCTGAAGA+AGG 0.424888 2.4:+8239795 MS.gene31315:CDS
ATCATAGCCTCTATTCTAGT+TGG 0.432373 2.4:+8239708 MS.gene31315:CDS
TTATTCAGGTAGACCTCCTA+AGG 0.433041 2.4:+8239313 MS.gene31315:CDS
GCTATAATCGACGCTGGAAG+TGG 0.466337 2.4:-8238964 None:intergenic
GTAGGGCGTTCTTCACCCCT+TGG 0.470540 2.4:-8239630 None:intergenic
CAATCTGTCTTAACTCCCTT+AGG 0.472334 2.4:-8239329 None:intergenic
TTGAAGTAACATTCTAAAGA+AGG 0.474571 2.4:-8239849 None:intergenic
CTAAGGGAGTTAAGACAGAT+TGG 0.476497 2.4:+8239330 MS.gene31315:CDS
TTTGAGTTTGAATGATTTCG+TGG 0.477326 2.4:-8239384 None:intergenic
TCATGTGGATCAAAGCATAT+AGG 0.483990 2.4:+8239269 MS.gene31315:CDS
TGTGCAGAGAAGTCTTTGTT+TGG 0.486062 2.4:+8239125 MS.gene31315:intron
AATGGTATGTTTGGTTCACT+AGG 0.489315 2.4:-8239600 None:intergenic
GATCATGAATGAGTATAGAT+TGG 0.501119 2.4:+8239352 MS.gene31315:CDS
ATTGAAAGTTCACGTTTGTA+GGG 0.501588 2.4:-8239647 None:intergenic
ATCTCTATAAGTATAATCCA+TGG 0.503265 2.4:+8238995 MS.gene31315:CDS
GGATGACTGGGTATTATGTC+GGG 0.505374 2.4:+8239527 MS.gene31315:CDS
TGGATGACTGGGTATTATGT+CGG 0.511953 2.4:+8239526 MS.gene31315:CDS
CCCGACATATTCTCAGTTGG+AGG 0.519660 2.4:-8239741 None:intergenic
CCTCCAACTGAGAATATGTC+GGG 0.520657 2.4:+8239741 MS.gene31315:CDS
ATAGCCTCTATTCTAGTTGG+AGG 0.523275 2.4:+8239711 MS.gene31315:CDS
AACTCCTCCAACTAGAATAG+AGG 0.529579 2.4:-8239715 None:intergenic
AACATACTTGGTAATTCCCA+TGG 0.531160 2.4:-8239012 None:intergenic
TGAAGTAACATTCTAAAGAA+GGG 0.537880 2.4:-8239848 None:intergenic
GGCGTTCTTCACCCCTTGGT+AGG 0.545615 2.4:-8239626 None:intergenic
AAGCCAATAATTTCTTCATG+TGG 0.547565 2.4:+8239254 MS.gene31315:CDS
TTGCTGATATCTTTATGTAA+CGG 0.554325 2.4:-8240003 None:intergenic
TGAGTTCTTCATCAGAAGGA+TGG 0.561435 2.4:-8238906 None:intergenic
TACTTGAAAACTTACCCGCA+TGG 0.566843 2.4:-8239411 None:intergenic
ACGAAATCATTCAAACTCAA+AGG 0.572394 2.4:+8239386 MS.gene31315:CDS
GCATAAAATTCTTAGATGGA+GGG 0.583191 2.4:+8238832 None:intergenic
AAACCCGACATATTCTCAGT+TGG 0.595124 2.4:-8239744 None:intergenic
ACTTAAAAGAAAATCTAATG+AGG 0.595312 2.4:+8239875 MS.gene31315:CDS
AGAGAAGTCTTTGTTTGGTG+AGG 0.597719 2.4:+8239130 MS.gene31315:intron
ACCTCCAACTGAGAATATGT+CGG 0.601698 2.4:+8239740 MS.gene31315:CDS
ATTTCAGCTATAATCGACGC+TGG 0.604840 2.4:-8238970 None:intergenic
TCTGTCTTAACTCCCTTAGG+AGG 0.608939 2.4:-8239326 None:intergenic
ACTATGAGTTCTTCATCAGA+AGG 0.609045 2.4:-8238910 None:intergenic
TCTCTATAAGTATAATCCAT+GGG 0.617155 2.4:+8238996 MS.gene31315:CDS
ACATACCATTAAACCTACCA+AGG 0.620960 2.4:+8239613 MS.gene31315:CDS
AGAGACCGAAAGTATCCGAA+TGG 0.624198 2.4:+8239176 MS.gene31315:CDS
CAAACTCAAAGGTTCCATGC+GGG 0.628355 2.4:+8239397 MS.gene31315:CDS
CATACCATTAAACCTACCAA+GGG 0.628364 2.4:+8239614 MS.gene31315:CDS
TATTCAGGTAGACCTCCTAA+GGG 0.630503 2.4:+8239314 MS.gene31315:CDS
AGCAGCTTCAGGATACTGGA+AGG 0.648622 2.4:+8239217 MS.gene31315:CDS
GAAGGATGGAATCTGAAACC+AGG 0.664271 2.4:-8238892 None:intergenic
GGATGGAATCTGAAACCAGG+TGG 0.688994 2.4:-8238889 None:intergenic
TCAAACTCAAAGGTTCCATG+CGG 0.709010 2.4:+8239396 MS.gene31315:CDS
ATACCATTAAACCTACCAAG+GGG 0.738597 2.4:+8239615 MS.gene31315:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTAAAAGAAAATCTAATG+AGG + chr2.4:8239875-8239894 MS.gene31315:CDS 20.0%
!! TCATTATGATAAACAAGATT+TGG - chr2.4:8239081-8239100 None:intergenic 20.0%
!!! TCATTAGATTTTCTTTTAAG+TGG - chr2.4:8239876-8239895 None:intergenic 20.0%
! ATCTCTATAAGTATAATCCA+TGG + chr2.4:8238995-8239014 MS.gene31315:CDS 25.0%
! TCTCTATAAGTATAATCCAT+GGG + chr2.4:8238996-8239015 MS.gene31315:CDS 25.0%
!! TGAAGTAACATTCTAAAGAA+GGG - chr2.4:8239851-8239870 None:intergenic 25.0%
!! TGGAAAAGTGTAATTTGATT+TGG - chr2.4:8238872-8238891 None:intergenic 25.0%
!! TTGAAGTAACATTCTAAAGA+AGG - chr2.4:8239852-8239871 None:intergenic 25.0%
AAAGAAGTCAAGAACATACT+TGG - chr2.4:8239027-8239046 None:intergenic 30.0%
AAGCCAATAATTTCTTCATG+TGG + chr2.4:8239254-8239273 MS.gene31315:CDS 30.0%
ACGAAATCATTCAAACTCAA+AGG + chr2.4:8239386-8239405 MS.gene31315:CDS 30.0%
AGTTCAAGCACTATGAATAA+AGG - chr2.4:8239471-8239490 None:intergenic 30.0%
ATTGAAAGTTCACGTTTGTA+GGG - chr2.4:8239650-8239669 None:intergenic 30.0%
GATCATGAATGAGTATAGAT+TGG + chr2.4:8239352-8239371 MS.gene31315:CDS 30.0%
GATCCACATGAAGAAATTAT+TGG - chr2.4:8239260-8239279 None:intergenic 30.0%
GTTCAAGCACTATGAATAAA+GGG - chr2.4:8239470-8239489 None:intergenic 30.0%
TTATTCCATTCGGATACTTT+CGG - chr2.4:8239184-8239203 None:intergenic 30.0%
! ATAACTTCAGTTTCTGAAGA+AGG + chr2.4:8239795-8239814 MS.gene31315:CDS 30.0%
! TTTGAGTTTGAATGATTTCG+TGG - chr2.4:8239387-8239406 None:intergenic 30.0%
!! AAAGCTCTTGTGTTTTATTC+AGG + chr2.4:8239299-8239318 MS.gene31315:CDS 30.0%
ACATACCATTAAACCTACCA+AGG + chr2.4:8239613-8239632 MS.gene31315:CDS 35.0%
ACTATGAGTTCTTCATCAGA+AGG - chr2.4:8238913-8238932 None:intergenic 35.0%
ATACCATTAAACCTACCAAG+GGG + chr2.4:8239615-8239634 MS.gene31315:CDS 35.0%
ATCATAGCCTCTATTCTAGT+TGG + chr2.4:8239708-8239727 MS.gene31315:CDS 35.0%
CATACCATTAAACCTACCAA+GGG + chr2.4:8239614-8239633 MS.gene31315:CDS 35.0%
GATTGAAAGTTCACGTTTGT+AGG - chr2.4:8239651-8239670 None:intergenic 35.0%
GGTAGGTTTAATGGTATGTT+TGG - chr2.4:8239612-8239631 None:intergenic 35.0%
TCATGTGGATCAAAGCATAT+AGG + chr2.4:8239269-8239288 MS.gene31315:CDS 35.0%
TTATGTCGGGTTCGAAATAA+AGG + chr2.4:8239540-8239559 MS.gene31315:CDS 35.0%
! AACATACTTGGTAATTCCCA+TGG - chr2.4:8239015-8239034 None:intergenic 35.0%
! AATGGTATGTTTGGTTCACT+AGG - chr2.4:8239603-8239622 None:intergenic 35.0%
! TCAAATTACACTTTTCCACC+TGG + chr2.4:8238874-8238893 MS.gene31315:CDS 35.0%
!! AGCTTTTGAAAATCGATGCT+AGG - chr2.4:8239972-8239991 None:intergenic 35.0%
!! CTATTTGGCCTTATTCCATT+CGG - chr2.4:8239194-8239213 None:intergenic 35.0%
!! GAAAGTATCCGAATGGAATA+AGG + chr2.4:8239183-8239202 MS.gene31315:CDS 35.0%
AAACCCGACATATTCTCAGT+TGG - chr2.4:8239747-8239766 None:intergenic 40.0%
AACTCCTCCAACTAGAATAG+AGG - chr2.4:8239718-8239737 None:intergenic 40.0%
ACCTCCAACTGAGAATATGT+CGG + chr2.4:8239740-8239759 MS.gene31315:CDS 40.0%
ATTTCAGCTATAATCGACGC+TGG - chr2.4:8238973-8238992 None:intergenic 40.0%
CAATCTGTCTTAACTCCCTT+AGG - chr2.4:8239332-8239351 None:intergenic 40.0%
CTAAGGGAGTTAAGACAGAT+TGG + chr2.4:8239330-8239349 MS.gene31315:CDS 40.0%
TACTTGAAAACTTACCCGCA+TGG - chr2.4:8239414-8239433 None:intergenic 40.0%
TATTCAGGTAGACCTCCTAA+GGG + chr2.4:8239314-8239333 MS.gene31315:CDS 40.0%
TCAAACTCAAAGGTTCCATG+CGG + chr2.4:8239396-8239415 MS.gene31315:CDS 40.0%
TGAGTTCTTCATCAGAAGGA+TGG - chr2.4:8238909-8238928 None:intergenic 40.0%
TGGATGACTGGGTATTATGT+CGG + chr2.4:8239526-8239545 MS.gene31315:CDS 40.0%
TGTGCAGAGAAGTCTTTGTT+TGG + chr2.4:8239125-8239144 MS.gene31315:intron 40.0%
TTATTCAGGTAGACCTCCTA+AGG + chr2.4:8239313-8239332 MS.gene31315:CDS 40.0%
! AGAGAAGTCTTTGTTTGGTG+AGG + chr2.4:8239130-8239149 MS.gene31315:intron 40.0%
! ATAGCCTCTATTCTAGTTGG+AGG + chr2.4:8239711-8239730 MS.gene31315:CDS 40.0%
! CTTTGTTTGGTGAGGAAGAA+TGG + chr2.4:8239138-8239157 MS.gene31315:CDS 40.0%
!! CATTTCTCTGCTTTTACAGC+TGG + chr2.4:8239506-8239525 MS.gene31315:intron 40.0%
ATGTCGGGTTTGAGCGTTAA+TGG + chr2.4:8239756-8239775 MS.gene31315:CDS 45.0%
CAAACTCAAAGGTTCCATGC+GGG + chr2.4:8239397-8239416 MS.gene31315:CDS 45.0%
CCAAATAGAACAGCAGCTTC+AGG + chr2.4:8239206-8239225 MS.gene31315:CDS 45.0%
CCTCCAACTGAGAATATGTC+GGG + chr2.4:8239741-8239760 MS.gene31315:CDS 45.0%
CCTGAAGCTGCTGTTCTATT+TGG - chr2.4:8239209-8239228 None:intergenic 45.0%
GGATGACTGGGTATTATGTC+GGG + chr2.4:8239527-8239546 MS.gene31315:CDS 45.0%
TCACCCCTTGGTAGGTTTAA+TGG - chr2.4:8239621-8239640 None:intergenic 45.0%
TCTGTCTTAACTCCCTTAGG+AGG - chr2.4:8239329-8239348 None:intergenic 45.0%
TTCGGATACTTTCGGTCTCT+CGG - chr2.4:8239176-8239195 None:intergenic 45.0%
! GAAGGATGGAATCTGAAACC+AGG - chr2.4:8238895-8238914 None:intergenic 45.0%
! GCTTTTACAGCTGGATGACT+GGG + chr2.4:8239515-8239534 MS.gene31315:intron 45.0%
! TGCTTTTACAGCTGGATGAC+TGG + chr2.4:8239514-8239533 MS.gene31315:intron 45.0%
!! AGAGACCGAAAGTATCCGAA+TGG + chr2.4:8239176-8239195 MS.gene31315:CDS 45.0%
AGCAGCTTCAGGATACTGGA+AGG + chr2.4:8239217-8239236 MS.gene31315:CDS 50.0%
CCCGACATATTCTCAGTTGG+AGG - chr2.4:8239744-8239763 None:intergenic 50.0%
GAACAGCAGCTTCAGGATAC+TGG + chr2.4:8239213-8239232 MS.gene31315:CDS 50.0%
GCTATAATCGACGCTGGAAG+TGG - chr2.4:8238967-8238986 None:intergenic 50.0%
TCAGGATACTGGAAGGCAAC+TGG + chr2.4:8239224-8239243 MS.gene31315:CDS 50.0%
! GGATGGAATCTGAAACCAGG+TGG - chr2.4:8238892-8238911 None:intergenic 50.0%
GGCGTTCTTCACCCCTTGGT+AGG - chr2.4:8239629-8239648 None:intergenic 60.0%
! GTAGGGCGTTCTTCACCCCT+TGG - chr2.4:8239633-8239652 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 8238847 8240013 8238847 ID=MS.gene31315
chr2.4 mRNA 8238847 8240013 8238847 ID=MS.gene31315.t1;Parent=MS.gene31315
chr2.4 exon 8238847 8239027 8238847 ID=MS.gene31315.t1.exon1;Parent=MS.gene31315.t1
chr2.4 CDS 8238847 8239027 8238847 ID=cds.MS.gene31315.t1;Parent=MS.gene31315.t1
chr2.4 exon 8239132 8239418 8239132 ID=MS.gene31315.t1.exon2;Parent=MS.gene31315.t1
chr2.4 CDS 8239132 8239418 8239132 ID=cds.MS.gene31315.t1;Parent=MS.gene31315.t1
chr2.4 exon 8239525 8240013 8239525 ID=MS.gene31315.t1.exon3;Parent=MS.gene31315.t1
chr2.4 CDS 8239525 8240013 8239525 ID=cds.MS.gene31315.t1;Parent=MS.gene31315.t1
Gene Sequence

>MS.gene31315

ATGGAGGGACAACAAAATGGATCCAAATCAAATTACACTTTTCCACCTGGTTTCAGATTCCATCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAAATCGCATCCACTTCCAGCGTCGATTATAGCTGAAATTGATCTCTATAAGTATAATCCATGGGAATTACCAAGTATGTTCTTGACTTCTTTCACTCTTCGTATTCTTAGTATATAGTATATACCAAATCTTGTTTATCATAATGAACATGTTTTTCTTTTTCTTGTGATTGTGCAGAGAAGTCTTTGTTTGGTGAGGAAGAATGGTATTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGAATAAGGCCAAATAGAACAGCAGCTTCAGGATACTGGAAGGCAACTGGAACTGATAAGCCAATAATTTCTTCATGTGGATCAAAGCATATAGGAGTGAAGAAAGCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGAGTTAAGACAGATTGGATCATGAATGAGTATAGATTGGTCGACACAACCACGAAATCATTCAAACTCAAAGGTTCCATGCGGGTAAGTTTTCAAGTAATAAGCATTTATTCATAGCTAGTGTGACTGTGACCCTTTATTCATAGTGCTTGAACTCAATGCAATAATAAGCATTTCTCTGCTTTTACAGCTGGATGACTGGGTATTATGTCGGGTTCGAAATAAAGGCTATTCATTGAAGAATTTATCTGAAAATCAAGAGAATCCTAGTGAACCAAACATACCATTAAACCTACCAAGGGGTGAAGAACGCCCTACAAACGTGAACTTTCAATCTGACATGATCAAAGATTATCAGTTCAAAGACTATCAGATCATAGCCTCTATTCTAGTTGGAGGAGTTATACCTCCAACTGAGAATATGTCGGGTTTGAGCGTTAATGGAAGCAAATGCAACAACATAACTTCAGTTTCTGAAGAAGGTTTCAATAAAGTGAATTCTCAAACTAAAATCCCTTCTTTAGAATGTTACTTCAATCCACTTAAAAGAAAATCTAATGAGGATGATGATCAGTTTGAACATCTCATTTCTTTTAACAGCAAGTTCAACACTGAGAACAAATTAGACAAATCTCCTAGCATCGATTTTCAAAAGCTAAACGAATTTACCGTTACATAA
Protein sequence

>MS.gene31315.t1

MEGQQNGSKSNYTFPPGFRFHPSDEELIVHYLQNKIKSHPLPASIIAEIDLYKYNPWELPKKSLFGEEEWYFFSPRDRKYPNGIRPNRTAASGYWKATGTDKPIISSCGSKHIGVKKALVFYSGRPPKGVKTDWIMNEYRLVDTTTKSFKLKGSMRLDDWVLCRVRNKGYSLKNLSENQENPSEPNIPLNLPRGEERPTNVNFQSDMIKDYQFKDYQIIASILVGGVIPPTENMSGLSVNGSKCNNITSVSEEGFNKVNSQTKIPSLECYFNPLKRKSNEDDDQFEHLISFNSKFNTENKLDKSPSIDFQKLNEFTVT