AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31331

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31331.t1 MTR_2g093310 98.276 174 3 0 1 174 25 198 2.29e-128 358
MS.gene31331.t1 MTR_4g060950 76.744 172 37 3 5 174 20 190 2.52e-95 274
MS.gene31331.t1 MTR_1g095850 72.121 165 38 4 10 174 73 229 8.23e-78 231
MS.gene31331.t1 MTR_2g068760 69.027 113 35 0 4 116 8 120 2.15e-56 174
MS.gene31331.t1 MTR_4g083680 64.035 114 41 0 4 117 10 123 1.83e-52 165
MS.gene31331.t1 MTR_5g083230 63.717 113 41 0 8 120 5 117 2.60e-51 162
MS.gene31331.t1 MTR_3g071590 63.964 111 40 0 8 118 7 117 8.38e-51 160
MS.gene31331.t1 MTR_3g031660 62.385 109 41 0 8 116 6 114 4.01e-49 157
MS.gene31331.t1 MTR_6g005070 54.098 122 56 0 1 122 1 122 2.16e-44 144
MS.gene31331.t1 MTR_5g083960 56.637 113 49 0 8 120 38 150 2.26e-44 145
MS.gene31331.t1 MTR_3g077240 59.048 105 43 0 8 112 9 113 5.89e-43 142
MS.gene31331.t1 MTR_4g105170 57.944 107 45 0 8 114 10 116 1.32e-42 140
MS.gene31331.t1 MTR_6g005080 52.459 122 58 0 1 122 2 123 1.58e-42 139
MS.gene31331.t1 MTR_3g094690 55.357 112 50 0 6 117 44 155 2.58e-42 141
MS.gene31331.t1 MTR_3g073690 59.804 102 41 0 8 109 8 109 3.55e-42 140
MS.gene31331.t1 MTR_7g033800 60.194 103 41 0 8 110 10 112 1.10e-41 138
MS.gene31331.t1 MTR_5g075020 58.929 112 46 0 6 117 40 151 6.10e-40 135
MS.gene31331.t1 MTR_3g094690 54.464 112 50 1 6 117 44 154 9.26e-40 135
MS.gene31331.t1 MTR_5g075020 58.929 112 46 0 6 117 44 155 1.03e-39 134
MS.gene31331.t1 MTR_5g017950 56.863 102 44 0 8 109 7 108 1.40e-38 134
MS.gene31331.t1 MTR_3g452660 53.271 107 50 0 8 114 6 112 3.10e-37 130
MS.gene31331.t1 MTR_3g071420 58.333 96 40 0 8 103 13 108 4.73e-36 124
MS.gene31331.t1 MTR_5g083010 55.882 102 45 0 8 109 10 111 1.14e-35 122
MS.gene31331.t1 MTR_8g040900 61.728 81 31 0 8 88 6 86 1.49e-34 121
MS.gene31331.t1 MTR_7g028905 44.144 111 62 0 5 115 1 111 3.71e-34 117
MS.gene31331.t1 MTR_6g027710 41.060 151 78 3 6 151 37 181 6.20e-34 119
MS.gene31331.t1 MTR_7g096530 53.398 103 47 1 8 109 13 115 3.66e-33 117
MS.gene31331.t1 MTR_8g036105 51.402 107 51 1 8 113 17 123 1.64e-32 115
MS.gene31331.t1 MTR_1g070220 50.909 110 53 1 2 110 8 117 3.51e-32 114
MS.gene31331.t1 MTR_8g079660 49.038 104 53 0 6 109 5 108 3.51e-32 116
MS.gene31331.t1 MTR_7g074990 50.000 102 50 1 9 109 20 121 5.00e-32 115
MS.gene31331.t1 MTR_5g093010 38.298 141 77 2 5 135 1 141 1.12e-31 111
MS.gene31331.t1 MTR_8g079620 44.361 133 69 2 6 135 5 135 2.37e-31 113
MS.gene31331.t1 MTR_8g036085 48.148 108 55 1 8 114 22 129 2.75e-31 113
MS.gene31331.t1 MTR_1g070205 51.961 102 46 2 9 107 12 113 8.30e-30 109
MS.gene31331.t1 MTR_7g096610 51.546 97 46 1 8 103 7 103 1.82e-29 108
MS.gene31331.t1 MTR_7g075230 50.476 105 49 2 8 109 11 115 7.73e-29 105
MS.gene31331.t1 MTR_6g027700 40.517 116 63 2 9 123 7 117 2.84e-28 104
MS.gene31331.t1 MTR_5g080470 48.958 96 48 1 8 102 6 101 6.11e-28 103
MS.gene31331.t1 MTR_8g079580 41.481 135 75 2 6 136 5 139 2.27e-27 102
MS.gene31331.t1 MTR_6g011250 33.133 166 94 4 10 170 10 163 3.38e-27 101
MS.gene31331.t1 MTR_6g011200 42.857 119 63 2 10 123 10 128 3.81e-26 100
MS.gene31331.t1 MTR_4g107450 45.161 93 51 0 10 102 11 103 9.50e-25 97.8
MS.gene31331.t1 MTR_6g011230 48.101 79 41 0 10 88 12 90 1.35e-22 89.7
MS.gene31331.t1 MTR_4g099230 44.211 95 48 2 10 99 3 97 6.10e-22 87.0
MS.gene31331.t1 MTR_2g100020 38.000 100 62 0 10 109 20 119 2.45e-21 88.2
MS.gene31331.t1 MTR_8g017090 39.048 105 59 1 10 114 13 112 3.99e-20 85.5
MS.gene31331.t1 MTR_5g085390 46.250 80 42 1 10 88 10 89 3.83e-18 79.0
MS.gene31331.t1 MTR_4g088035 33.721 86 57 0 10 95 7 92 2.95e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31331.t1 AT2G28500 66.667 186 42 4 5 174 51 232 4.43e-80 237
MS.gene31331.t1 AT1G07900 66.667 174 43 3 4 174 28 189 7.67e-79 233
MS.gene31331.t1 AT2G30130 65.741 108 37 0 8 115 7 114 7.85e-51 162
MS.gene31331.t1 AT1G31320 66.667 114 38 0 4 117 8 121 1.20e-46 150
MS.gene31331.t1 AT1G16530 47.273 165 74 4 6 169 11 163 7.18e-45 145
MS.gene31331.t1 AT5G63090 58.182 110 46 0 8 117 10 119 3.82e-44 144
MS.gene31331.t1 AT5G63090 58.182 110 46 0 8 117 10 119 3.82e-44 144
MS.gene31331.t1 AT5G63090 58.182 110 46 0 8 117 10 119 3.82e-44 144
MS.gene31331.t1 AT5G63090 58.182 110 46 0 8 117 10 119 3.82e-44 144
MS.gene31331.t1 AT3G27650 60.194 103 41 0 8 110 38 140 1.39e-42 140
MS.gene31331.t1 AT2G30340 52.174 115 55 0 6 120 50 164 2.78e-42 142
MS.gene31331.t1 AT2G30340 52.174 115 55 0 6 120 49 163 3.02e-42 142
MS.gene31331.t1 AT2G23660 56.731 104 45 0 8 111 4 107 1.71e-41 141
MS.gene31331.t1 AT2G23660 56.731 104 45 0 8 111 4 107 1.71e-41 141
MS.gene31331.t1 AT2G23660 56.731 104 45 0 8 111 4 107 1.71e-41 141
MS.gene31331.t1 AT2G40470 57.143 112 48 0 6 117 17 128 4.83e-39 132
MS.gene31331.t1 AT3G26660 52.212 113 52 1 7 117 1 113 9.03e-39 129
MS.gene31331.t1 AT3G26620 52.212 113 52 1 7 117 1 113 9.64e-39 129
MS.gene31331.t1 AT2G40470 56.780 118 50 1 6 123 42 158 1.01e-38 132
MS.gene31331.t1 AT5G66870 56.863 102 44 0 8 109 6 107 1.36e-38 134
MS.gene31331.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene31331.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene31331.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene31331.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene31331.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene31331.t1 AT4G00210 56.075 107 46 1 8 113 10 116 6.28e-36 124
MS.gene31331.t1 AT3G11090 52.427 103 49 0 8 110 10 112 1.86e-35 122
MS.gene31331.t1 AT3G03760 48.214 112 57 1 8 118 50 161 8.03e-34 120
MS.gene31331.t1 AT3G58190 42.208 154 74 5 9 160 11 151 1.03e-31 114
MS.gene31331.t1 AT4G00220 49.038 104 52 1 12 114 20 123 9.16e-31 111
MS.gene31331.t1 AT2G31310 52.577 97 45 1 8 103 6 102 1.21e-30 110
MS.gene31331.t1 AT2G45410 53.398 103 47 1 12 113 19 121 1.44e-30 110
MS.gene31331.t1 AT2G42430 39.744 156 86 4 8 160 14 164 2.45e-30 111
MS.gene31331.t1 AT2G45420 50.000 104 51 1 12 114 40 143 5.57e-30 110
MS.gene31331.t1 AT2G42440 49.550 111 50 2 8 117 6 111 4.91e-29 107
MS.gene31331.t1 AT5G06080 43.750 112 62 1 8 118 6 117 1.87e-27 101
MS.gene31331.t1 AT3G50510 44.231 104 58 0 6 109 9 112 5.17e-27 101
MS.gene31331.t1 AT3G50510 44.231 104 58 0 6 109 9 112 5.17e-27 101
MS.gene31331.t1 AT3G47870 42.453 106 56 1 10 115 37 137 4.29e-25 99.0
MS.gene31331.t1 AT5G35900 42.000 100 58 0 10 109 6 105 5.01e-25 96.3
MS.gene31331.t1 AT1G72980 44.211 95 53 0 8 102 12 106 1.89e-24 95.1
MS.gene31331.t1 AT3G13850 40.000 105 58 1 10 114 37 136 2.88e-22 90.5
MS.gene31331.t1 AT1G06280 40.260 77 46 0 10 86 25 101 2.73e-17 76.3
MS.gene31331.t1 AT2G19820 38.043 92 56 1 5 95 8 99 7.93e-17 72.8
MS.gene31331.t1 AT4G22700 38.235 102 59 3 10 109 6 105 1.06e-15 71.6
MS.gene31331.t1 AT1G36000 32.353 102 69 0 1 102 1 102 1.19e-12 62.0
MS.gene31331.t1 AT5G15060 41.892 74 39 2 10 80 18 90 1.91e-11 59.3

Find 35 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTCATTGACTTGCTTT+TGG 0.237207 2.4:+8424816 None:intergenic
ACCACTGCTCATCGTGTATT+TGG 0.246441 2.4:-8427068 MS.gene31331:CDS
GAGGCTCCCACAATGAATTT+TGG 0.257844 2.4:+8424597 None:intergenic
ATTCATTGTGGGAGCCTCTT+TGG 0.264450 2.4:-8424592 MS.gene31331:CDS
ACGATGAGCAGTGGTAAATT+TGG 0.308489 2.4:+8427076 None:intergenic
GGTTCAGTGGGAGGGAAATA+AGG 0.330275 2.4:+8427101 None:intergenic
CAACATCATCAAGTTCTTAC+AGG 0.365225 2.4:-8427039 MS.gene31331:intron
AGAATAAGAGACCCTGTATA+TGG 0.385791 2.4:-8424863 MS.gene31331:CDS
GATTGTTGTGGAGATTCATT+TGG 0.432048 2.4:+8424698 None:intergenic
GGTAAATTTGGAAGGTTCAG+TGG 0.438516 2.4:+8427088 None:intergenic
ATGTGCTGAGAAATGTGTTT+TGG 0.444237 2.4:-8427126 MS.gene31331:CDS
GCACCTGCACATCCATATAC+AGG 0.450577 2.4:+8424851 None:intergenic
AGTTAGTAGCATGGTTTATG+AGG 0.452667 2.4:-8424894 MS.gene31331:CDS
GCAAATCAAAGCTAGGAGAT+TGG 0.453679 2.4:+8424739 None:intergenic
TAAGAACTTGATGATGTTGC+TGG 0.462784 2.4:+8427043 None:intergenic
TCTCCTAGCTTTGATTTGCA+TGG 0.470568 2.4:-8424735 MS.gene31331:CDS
GCATCAGCTCTTTGAGACTC+TGG 0.485917 2.4:+8424917 None:intergenic
ATTTGGAAGGTTCAGTGGGA+GGG 0.499239 2.4:+8427093 None:intergenic
TGATAATCACTGCTGTAGGC+AGG 0.499915 2.4:+8424653 None:intergenic
CACTAGCCAAAATTCATTGT+GGG 0.528888 2.4:-8424603 MS.gene31331:CDS
TTTCCATGCAAATCAAAGCT+AGG 0.531294 2.4:+8424732 None:intergenic
AATTTGGAAGGTTCAGTGGG+AGG 0.549947 2.4:+8427092 None:intergenic
GCTCAACTTCATGTCCAAAG+AGG 0.560755 2.4:+8424578 None:intergenic
GTAAATTTGGAAGGTTCAGT+GGG 0.562077 2.4:+8427089 None:intergenic
GACCCTGTATATGGATGTGC+AGG 0.562336 2.4:-8424854 MS.gene31331:CDS
AGCTGATGCAGTTAGTAGCA+TGG 0.566903 2.4:-8424903 MS.gene31331:CDS
TGAGCAGTGGTAAATTTGGA+AGG 0.588814 2.4:+8427080 None:intergenic
TGAATCTCCACAACAATCAG+TGG 0.592712 2.4:-8424693 MS.gene31331:CDS
AAAATCTTGCAAGCAGCACA+AGG 0.592933 2.4:+8427158 None:intergenic
CAAGGACTCATGACAACTTG+AGG 0.595290 2.4:+8427176 None:intergenic
ATGACAACTTGAGGAGCCAT+AGG 0.596176 2.4:+8427185 None:intergenic
ACCAAATACACGATGAGCAG+TGG 0.596399 2.4:+8427067 None:intergenic
CACCTGCACATCCATATACA+GGG 0.624861 2.4:+8424852 None:intergenic
ACACTAGCCAAAATTCATTG+TGG 0.631207 2.4:-8424604 MS.gene31331:CDS
AAATTGTCCACTGATTGTTG+TGG 0.665010 2.4:+8424686 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATTTAAAACAAAAAAAT+TGG + chr2.4:8426603-8426622 None:intergenic 10.0%
!! AATTTCATAGATAATATTTC+CGG - chr2.4:8426194-8426213 MS.gene31331:intron 15.0%
!! ACAATAGTTAAGTAAAATTT+AGG - chr2.4:8426661-8426680 MS.gene31331:intron 15.0%
!!! AAAAATTCACAAGATTTTAT+AGG + chr2.4:8424805-8424824 None:intergenic 15.0%
!!! ATTGTATGATTTTCTATATA+TGG - chr2.4:8425169-8425188 MS.gene31331:intron 15.0%
!!! CATTTTTTATAGATCAAAAT+AGG + chr2.4:8424984-8425003 None:intergenic 15.0%
!!! GAAAAGGTTTTTTTTTTTTA+AGG - chr2.4:8425708-8425727 MS.gene31331:intron 15.0%
!!! TGTTTTAAATAACTTATTCA+TGG - chr2.4:8426610-8426629 MS.gene31331:intron 15.0%
!! GGTATCATTCAAAATTAATT+AGG + chr2.4:8425263-8425282 None:intergenic 20.0%
!! TAATTTCTACTAGATATTAG+AGG + chr2.4:8426017-8426036 None:intergenic 20.0%
!! TGTATATTAGTAGAGAAATA+TGG + chr2.4:8425454-8425473 None:intergenic 20.0%
!!! ATGTGAAGTTTTATTTACAA+CGG + chr2.4:8426223-8426242 None:intergenic 20.0%
!!! CAAAATTACACATTTTCAAA+TGG + chr2.4:8425415-8425434 None:intergenic 20.0%
!!! CTATGAAATTGAATTTTCAA+AGG + chr2.4:8426184-8426203 None:intergenic 20.0%
!!! GTCTTTTTTTTGAAGAAATT+AGG + chr2.4:8425234-8425253 None:intergenic 20.0%
!!! TAAAGTGTTACTTTAATAGA+GGG + chr2.4:8425359-8425378 None:intergenic 20.0%
!!! TATTTTTGTCAAAGTTAATG+TGG - chr2.4:8424923-8424942 MS.gene31331:CDS 20.0%
! AAAATATGCCAAATACATGT+AGG - chr2.4:8425757-8425776 MS.gene31331:intron 25.0%
! AATGCATAATTTCCAAGATA+AGG + chr2.4:8426315-8426334 None:intergenic 25.0%
! ACACGGTATATGTTAAATTT+AGG + chr2.4:8426077-8426096 None:intergenic 25.0%
! AGGTACATCATCAATAATAT+GGG - chr2.4:8425777-8425796 MS.gene31331:intron 25.0%
! ATATTGTCTTGCGTATTAAA+TGG + chr2.4:8426133-8426152 None:intergenic 25.0%
! ATCAAAATAGGTGAATAGTT+AGG + chr2.4:8424972-8424991 None:intergenic 25.0%
! ATCATACAATAGTCAACAAA+TGG + chr2.4:8425159-8425178 None:intergenic 25.0%
! TAAATTTAACATATACCGTG+TGG - chr2.4:8426076-8426095 MS.gene31331:intron 25.0%
! TACTTATAATAGTGACTGAA+TGG - chr2.4:8426521-8426540 MS.gene31331:intron 25.0%
! TAGGTACATCATCAATAATA+TGG - chr2.4:8425776-8425795 MS.gene31331:intron 25.0%
! TCTATATATGGTATGTTGAT+GGG - chr2.4:8425181-8425200 MS.gene31331:intron 25.0%
! TTAAGCTCAAAATTATGCAT+TGG - chr2.4:8425575-8425594 MS.gene31331:intron 25.0%
! TTCTATATATGGTATGTTGA+TGG - chr2.4:8425180-8425199 MS.gene31331:intron 25.0%
!! AAAAAAAAAACCTTTTCCGA+TGG + chr2.4:8425705-8425724 None:intergenic 25.0%
!!! GTAAAGTGTTACTTTAATAG+AGG + chr2.4:8425360-8425379 None:intergenic 25.0%
!!! GTAGTTTTACTTTACAATAC+AGG - chr2.4:8424751-8424770 MS.gene31331:CDS 25.0%
AATAGTCAACAAATGGTCTA+TGG + chr2.4:8425152-8425171 None:intergenic 30.0%
ACTCTCATGTTGAGTTTAAT+AGG + chr2.4:8425861-8425880 None:intergenic 30.0%
ATGATGTACCTACATGTATT+TGG + chr2.4:8425768-8425787 None:intergenic 30.0%
CTATATAACTTTGACTCAAG+TGG + chr2.4:8426742-8426761 None:intergenic 30.0%
CTATATATGGTATGTTGATG+GGG - chr2.4:8425182-8425201 MS.gene31331:intron 30.0%
CTTGTTAGAATTAATGCAAG+AGG + chr2.4:8426106-8426125 None:intergenic 30.0%
GAATAGTTAGGTGAATTTGA+CGG + chr2.4:8424960-8424979 None:intergenic 30.0%
GGTACATCATCAATAATATG+GGG - chr2.4:8425778-8425797 MS.gene31331:intron 30.0%
GTACATCATCAATAATATGG+GGG - chr2.4:8425779-8425798 MS.gene31331:intron 30.0%
GTGTCAATTCTATCGAATTT+GGG + chr2.4:8425930-8425949 None:intergenic 30.0%
TCAACTGTGTCAAGTATTAA+GGG - chr2.4:8425612-8425631 MS.gene31331:intron 30.0%
TGTGTCAATTCTATCGAATT+TGG + chr2.4:8425931-8425950 None:intergenic 30.0%
TTAAAGTAGCAACCTTATCT+TGG - chr2.4:8426300-8426319 MS.gene31331:intron 30.0%
! AAGATTTTATAGGCCTATGT+AGG + chr2.4:8424795-8424814 None:intergenic 30.0%
! AATAAAACAACCTTTTCCGA+TGG + chr2.4:8425979-8425998 None:intergenic 30.0%
!! ATTTTGATAATCACTGCTGT+AGG + chr2.4:8427122-8427141 None:intergenic 30.0%
!!! CTTTTGTGAGACTAGTTTAA+GGG + chr2.4:8425284-8425303 None:intergenic 30.0%
!!! TATTCTCCTCCATTTTTTTC+AGG - chr2.4:8426823-8426842 MS.gene31331:intron 30.0%
!!! TCTTTTAAGACTTTCTCCAT+CGG - chr2.4:8425686-8425705 MS.gene31331:intron 30.0%
!!! TCTTTTGTGAGACTAGTTTA+AGG + chr2.4:8425285-8425304 None:intergenic 30.0%
ACACTAGCCAAAATTCATTG+TGG - chr2.4:8427164-8427183 MS.gene31331:CDS 35.0%
AGAATAAGAGACCCTGTATA+TGG - chr2.4:8426905-8426924 MS.gene31331:intron 35.0%
AGTTAGTAGCATGGTTTATG+AGG - chr2.4:8426874-8426893 MS.gene31331:intron 35.0%
ATTTAACATATACCGTGTGG+TGG - chr2.4:8426079-8426098 MS.gene31331:intron 35.0%
CAACATCATCAAGTTCTTAC+AGG - chr2.4:8424729-8424748 MS.gene31331:CDS 35.0%
CACTAGCCAAAATTCATTGT+GGG - chr2.4:8427165-8427184 MS.gene31331:CDS 35.0%
CTCATGTTGAGTTTAATAGG+AGG + chr2.4:8425858-8425877 None:intergenic 35.0%
CTGGAAGTTCCTGAAAAAAA+TGG + chr2.4:8426835-8426854 None:intergenic 35.0%
GAAGTTCCTGAAAAAAATGG+AGG + chr2.4:8426832-8426851 None:intergenic 35.0%
GACCATGGTAATTCAAAGTT+CGG - chr2.4:8426638-8426657 MS.gene31331:intron 35.0%
GATTGTTGTGGAGATTCATT+TGG + chr2.4:8427073-8427092 None:intergenic 35.0%
GTAAATTTGGAAGGTTCAGT+GGG + chr2.4:8424682-8424701 None:intergenic 35.0%
GTCAACTGTGTCAAGTATTA+AGG - chr2.4:8425611-8425630 MS.gene31331:intron 35.0%
TAATAGGAGGCAAGCAAATA+AGG + chr2.4:8425845-8425864 None:intergenic 35.0%
TATGCTAACAAGTGTCCTTA+AGG + chr2.4:8426419-8426438 None:intergenic 35.0%
TGTCGTCATTCTAAATTCAC+AGG + chr2.4:8424846-8424865 None:intergenic 35.0%
TTAGGTGAATTTGACGGAAT+CGG + chr2.4:8424954-8424973 None:intergenic 35.0%
TTATTCATGGTGAAAGACCA+TGG - chr2.4:8426623-8426642 MS.gene31331:intron 35.0%
TTTAACATATACCGTGTGGT+GGG - chr2.4:8426080-8426099 MS.gene31331:intron 35.0%
TTTAGATCATGTTCCATACG+TGG + chr2.4:8425040-8425059 None:intergenic 35.0%
TTTCCATGCAAATCAAAGCT+AGG + chr2.4:8427039-8427058 None:intergenic 35.0%
! AAATTGTCCACTGATTGTTG+TGG + chr2.4:8427085-8427104 None:intergenic 35.0%
! ATGCATTGGCATGTGTAATA+AGG - chr2.4:8425589-8425608 MS.gene31331:intron 35.0%
! ATGTGCTGAGAAATGTGTTT+TGG - chr2.4:8424642-8424661 MS.gene31331:CDS 35.0%
!! TAAGAACTTGATGATGTTGC+TGG + chr2.4:8424728-8424747 None:intergenic 35.0%
!!! GTTTTATTTACAACGGTGAC+CGG + chr2.4:8426216-8426235 None:intergenic 35.0%
AAAATCTTGCAAGCAGCACA+AGG + chr2.4:8424613-8424632 None:intergenic 40.0%
AAGACTTTCTCCATCGGAAA+AGG - chr2.4:8425692-8425711 MS.gene31331:intron 40.0%
AATCCTTAACGAGTGCCTTA+AGG - chr2.4:8426401-8426420 MS.gene31331:intron 40.0%
ACGATGAGCAGTGGTAAATT+TGG + chr2.4:8424695-8424714 None:intergenic 40.0%
ATAGGCCTATGTAGGTACTT+AGG + chr2.4:8424787-8424806 None:intergenic 40.0%
ATCATCTATTGCGAGACTGA+GGG + chr2.4:8425392-8425411 None:intergenic 40.0%
ATGTTCCATACGTGGTCAAA+TGG + chr2.4:8425032-8425051 None:intergenic 40.0%
CTGTGTCAAGTATTAAGGGA+CGG - chr2.4:8425616-8425635 MS.gene31331:intron 40.0%
GCAAATCAAAGCTAGGAGAT+TGG + chr2.4:8427032-8427051 None:intergenic 40.0%
GCTTGTCTTGAACTCTCAAT+CGG + chr2.4:8426770-8426789 None:intergenic 40.0%
GGTAAATTTGGAAGGTTCAG+TGG + chr2.4:8424683-8424702 None:intergenic 40.0%
GTCCGAACTTTGAATTACCA+TGG + chr2.4:8426643-8426662 None:intergenic 40.0%
TCATCAATAATATGGGGGCT+AGG - chr2.4:8425784-8425803 MS.gene31331:intron 40.0%
TGAATCTCCACAACAATCAG+TGG - chr2.4:8427075-8427094 MS.gene31331:CDS 40.0%
TGAGCAGTGGTAAATTTGGA+AGG + chr2.4:8424691-8424710 None:intergenic 40.0%
TTTCACCATTTGACCACGTA+TGG - chr2.4:8425024-8425043 MS.gene31331:intron 40.0%
! ACTAGCCTAAGTACCTACAT+AGG - chr2.4:8424779-8424798 MS.gene31331:CDS 40.0%
!! TCTCCTAGCTTTGATTTGCA+TGG - chr2.4:8427033-8427052 MS.gene31331:intron 40.0%
!!! GAAGCTCATTGACTTGCTTT+TGG + chr2.4:8426955-8426974 None:intergenic 40.0%
AATTTGGAAGGTTCAGTGGG+AGG + chr2.4:8424679-8424698 None:intergenic 45.0%
ACCAAATACACGATGAGCAG+TGG + chr2.4:8424704-8424723 None:intergenic 45.0%
ACCACTGCTCATCGTGTATT+TGG - chr2.4:8424700-8424719 MS.gene31331:CDS 45.0%
AGCTGATGCAGTTAGTAGCA+TGG - chr2.4:8426865-8426884 MS.gene31331:intron 45.0%
ATTCATTGTGGGAGCCTCTT+TGG - chr2.4:8427176-8427195 MS.gene31331:CDS 45.0%
ATTTGGAAGGTTCAGTGGGA+GGG + chr2.4:8424678-8424697 None:intergenic 45.0%
CAAGGACTCATGACAACTTG+AGG + chr2.4:8424595-8424614 None:intergenic 45.0%
CACCTGCACATCCATATACA+GGG + chr2.4:8426919-8426938 None:intergenic 45.0%
GATCATCTATTGCGAGACTG+AGG + chr2.4:8425393-8425412 None:intergenic 45.0%
GTCAAGTATTAAGGGACGGA+GGG - chr2.4:8425620-8425639 MS.gene31331:intron 45.0%
TGATAATCACTGCTGTAGGC+AGG + chr2.4:8427118-8427137 None:intergenic 45.0%
TGTAGGTACTTAGGCTAGTG+TGG + chr2.4:8424778-8424797 None:intergenic 45.0%
TGTCAAGTATTAAGGGACGG+AGG - chr2.4:8425619-8425638 MS.gene31331:intron 45.0%
! GAGGCTCCCACAATGAATTT+TGG + chr2.4:8427174-8427193 None:intergenic 45.0%
! TGTCCTTAAGGCACTCGTTA+AGG + chr2.4:8426407-8426426 None:intergenic 45.0%
!!! GCTCATTGACTTGCTTTTGG+AGG + chr2.4:8426952-8426971 None:intergenic 45.0%
ATGGGGGCTAGGATTAGACA+GGG - chr2.4:8425795-8425814 MS.gene31331:intron 50.0%
GACCCTGTATATGGATGTGC+AGG - chr2.4:8426914-8426933 MS.gene31331:intron 50.0%
GCACCTGCACATCCATATAC+AGG + chr2.4:8426920-8426939 None:intergenic 50.0%
GGTTCAGTGGGAGGGAAATA+AGG + chr2.4:8424670-8424689 None:intergenic 50.0%
TATGGGGGCTAGGATTAGAC+AGG - chr2.4:8425794-8425813 MS.gene31331:intron 50.0%
!! GCATCAGCTCTTTGAGACTC+TGG + chr2.4:8426854-8426873 None:intergenic 50.0%
AATGCAAGAGGCCCACCACA+CGG + chr2.4:8426094-8426113 None:intergenic 55.0%
GGTAGCTCACGAGTTAGCTC+AGG + chr2.4:8425824-8425843 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 8424586 8427204 8424586 ID=MS.gene31331
chr2.4 mRNA 8424586 8427204 8424586 ID=MS.gene31331.t1;Parent=MS.gene31331
chr2.4 exon 8427040 8427204 8427040 ID=MS.gene31331.t1.exon1;Parent=MS.gene31331.t1
chr2.4 CDS 8427040 8427204 8427040 ID=cds.MS.gene31331.t1;Parent=MS.gene31331.t1
chr2.4 exon 8424586 8424945 8424586 ID=MS.gene31331.t1.exon2;Parent=MS.gene31331.t1
chr2.4 CDS 8424586 8424945 8424586 ID=cds.MS.gene31331.t1;Parent=MS.gene31331.t1
Gene Sequence

>MS.gene31331

ATGGCTCCTCAAGTTGTCATGAGTCCTTGTGCTGCTTGCAAGATTTTAAGAAGAAGATGTGCTGAGAAATGTGTTTTGGCACCTTATTTCCCTCCCACTGAACCTTCCAAATTTACCACTGCTCATCGTGTATTTGGTGCCAGCAACATCATCAAGTTCTTACAGGTAGTTTTACTTTACAATACAGGACCACACTAGCCTAAGTACCTACATAGGCCTATAAAATCTTGTGAATTTTTTCTTAAAAAAAAAAAAATCCTGTGAATTTAGAATGACGACAAATTTGACAAAATCACAATGACATGTTAGATTTTAATTTGTTTAAGTTCAGAAATATTATTTTTGTCAAAGTTAATGTGGCACATCCGATTCCGTCAAATTCACCTAACTATTCACCTATTTTGATCTATAAAAAATGCACTGCACATTTGTTATATATTTCACCATTTGACCACGTATGGAACATGATCTAAACTAACGCTCTGAATCATGCTTGTGTCAATATGATGAAGAGACGTGATGAAGAATGAATAATAGATAACAAACATATTACTGTGCATAGACCATAGACCATTTGTTGACTATTGTATGATTTTCTATATATGGTATGTTGATGGGGATGAATAGATATGATAAGACTAGTCTCCTAATTTCTTCAAAAAAAAGACTAGTCTCCTAATTAATTTTGAATGATACCCTTAAACTAGTCTCACAAAAGATACAGTGCACATCAATCAATATAATTATAATTGCATATATTTTATTTTATTCCCTCTATTAAAGTAACACTTTACTATACTACTCCCTCAGTCTCGCAATAGATGATCCATTTGAAAATGTGTAATTTTGACGTAACTTACTTTAACCATATTTCTCTACTAATATACAAATATAAATAATATCATATAAGATGTCGTTAGATTTGTCTCGATGAGTATTTTCAAAATATCAAATTTTCATAATTTTTTCTAATATATTACTCAAGATATTTAAGCTCAAAATTATGCATTGGCATGTGTAATAAGGTCAACTGTGTCAAGTATTAAGGGACGGAGGGAGTATAATTTATTTTAATTTAGCTTATAATGCTACTATTACTATCTTTTAAGACTTTCTCCATCGGAAAAGGTTTTTTTTTTTTAAGGAATAAATTCATTGCATTTCATTTGCTAAAATATGCCAAATACATGTAGGTACATCATCAATAATATGGGGGCTAGGATTAGACAGGGCTGCCTGAGCTAACTCGTGAGCTACCTTATTTGCTTGCCTCCTATTAAACTCAACATGAGAGTTCTGAAATCTATCATCTAGTAGCTGTTTACAAGCAGTAATAATACACCCAAATTCGATAGAATTGACACAATCAACAACTCTTTTAAGACTTTCTCCATCGGAAAAGGTTGTTTTATTTTTATAGATAGTCAACCTCTAATATCTAGTAGAAATTAGAATGCAAATTCACTTAAGATAATGATTTTTCAACAACCTAAATTTAACATATACCGTGTGGTGGGCCTCTTGCATTAATTCTAACAAGAAAACCATTTAATACGCAAGACAATATAGTTGACATTTAAACATATTAAATTTGTCCTTTGAAAATTCAATTTCATAGATAATATTTCCGGTCACCGTTGTAAATAAAACTTCACATTTTAAATACATTAAAAAAAAATATTAACAAGTGTATTTAAAGCATTTGATAAGAAATTTAAAGTAGCAACCTTATCTTGGAAATTATGCATTTAACTTATTGAAAGATTAAAAACAACTTTTTTTTTACATGAAATTTTACAATTATTTCGTTTTTTGAATCCTTAACGAGTGCCTTAAGGACACTTGTTAGCATAACTTATTAAATAATTAATGTATCTAGTTTTTATTATAGATTAGATATATGAATTATTCATTGTATCTAAAAAAATGAAGTGTTACTTATAATAGTGACTGAATGGAGTAGTAATCAAAATGATTTTGACTATAGTATTTTGACATTAAATATATACTGTGACCAATTTTTTTGTTTTAAATAACTTATTCATGGTGAAAGACCATGGTAATTCAAAGTTCGGACAATAGTTAAGTAAAATTTAGGCATGATTATTTTTATCAAGAATCGAACTCGAATTTTCTCAAACAACTGTTATTAACCACTTGAGTCAAAGTTATATAGTGTGACCGATTGAGAGTTCAAGACAAGCATTGATTCAAGCACTCATAATTAATGATAAAATTATTCTCCTCCATTTTTTTCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTTAGTAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGTCACCTCCAAAAGCAAGTCAATGAGCTTCAAGCACAACTAGCTAAGTCACAAGCTGAGCTTATTAACATGCAATTACAACAATCCAATCTCCTAGCTTTGATTTGCATGGAAATGAAAGAAACTCCAAATGAATCTCCACAACAATCAGTGGACAATTTCATTTCAAGTCCTGCCTACAGCAGTGATTATCAAAATAATCTCAACTTCTTTGACGACAACACTAGCCAAAATTCATTGTGGGAGCCTCTTTGGACATGA
Protein sequence

>MS.gene31331.t1

MAPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKSQAELINMQLQQSNLLALICMEMKETPNESPQQSVDNFISSPAYSSDYQNNLNFFDDNTSQNSLWEPLWT