Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31458.t1 | KEH39148.1 | 86.7 | 203 | 23 | 2 | 1 | 200 | 1 | 202 | 4.20E-89 | 337.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31458.t1 | F4JIJ7 | 40.2 | 179 | 93 | 6 | 13 | 180 | 11 | 186 | 3.6e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31458.t1 | A0A072VCG2 | 86.7 | 203 | 23 | 2 | 1 | 200 | 1 | 202 | 3.0e-89 | 337.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31458.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31458.t1 | MTR_2g090480 | 86.700 | 203 | 23 | 2 | 1 | 200 | 1 | 202 | 9.36e-126 | 355 |
| MS.gene31458.t1 | MTR_2g090425 | 82.609 | 207 | 33 | 1 | 1 | 204 | 1 | 207 | 3.48e-120 | 345 |
| MS.gene31458.t1 | MTR_2g090440 | 82.000 | 200 | 36 | 0 | 1 | 200 | 1 | 200 | 1.74e-119 | 339 |
| MS.gene31458.t1 | MTR_2g090500 | 81.818 | 154 | 28 | 0 | 47 | 200 | 60 | 213 | 5.85e-87 | 258 |
| MS.gene31458.t1 | MTR_4g078350 | 64.322 | 199 | 56 | 5 | 9 | 199 | 8 | 199 | 4.53e-84 | 249 |
| MS.gene31458.t1 | MTR_2g013920 | 43.605 | 172 | 90 | 3 | 12 | 181 | 6 | 172 | 3.52e-43 | 144 |
| MS.gene31458.t1 | MTR_2g090515 | 66.071 | 56 | 18 | 1 | 1 | 56 | 1 | 55 | 3.07e-17 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31458.t1 | AT4G20970 | 39.106 | 179 | 95 | 5 | 13 | 180 | 11 | 186 | 9.21e-32 | 115 |
| MS.gene31458.t1 | AT1G10585 | 29.545 | 176 | 112 | 5 | 11 | 184 | 12 | 177 | 7.04e-15 | 70.9 |
| MS.gene31458.t1 | AT1G10586 | 25.824 | 182 | 124 | 5 | 1 | 180 | 1 | 173 | 4.93e-11 | 60.1 |
Find 60 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTGGGATCTTGAAAT+TGG | 0.192948 | 2.4:-10165198 | MS.gene31458:CDS |
| TTTCAATCTCTCGCCTATTT+TGG | 0.215651 | 2.4:+10165263 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2.4:-10166947 | MS.gene31458:CDS |
| TGGAAACACAACCTCAATTC+TGG | 0.245971 | 2.4:-10165212 | MS.gene31458:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.260572 | 2.4:-10167102 | MS.gene31458:CDS |
| AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 2.4:-10167145 | MS.gene31458:CDS |
| CCGCAATCTTTGTTACGATT+TGG | 0.283657 | 2.4:-10165291 | MS.gene31458:CDS |
| ATCACCTTTGGATCATAGTT+AGG | 0.324173 | 2.4:+10167669 | None:intergenic |
| CTCTCCCAGCTTCACCGTTC+AGG | 0.324702 | 2.4:+10164081 | None:intergenic |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2.4:+10167697 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 2.4:-10167144 | MS.gene31458:CDS |
| CGATTTGGAGAAACCAAAAT+AGG | 0.365801 | 2.4:-10165276 | MS.gene31458:CDS |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2.4:+10167709 | None:intergenic |
| TTCGACCTGAACGGTGAAGC+TGG | 0.395736 | 2.4:-10164086 | MS.gene31458:CDS |
| ATTGCCTCATCTACTTGATC+AGG | 0.400525 | 2.4:+10167210 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2.4:-10166943 | MS.gene31458:CDS |
| TAACTTCACAGAAAATAAAA+TGG | 0.408004 | 2.4:+10167001 | None:intergenic |
| CAAACATTATATTTGTCTCT+AGG | 0.410779 | 2.4:+10167172 | None:intergenic |
| CGAGAGATTGAAAGCATTTG+TGG | 0.420058 | 2.4:-10165253 | MS.gene31458:CDS |
| AACGATCTTTCTATCTACTT+TGG | 0.434646 | 2.4:+10167749 | None:intergenic |
| TTTGAGCTAGTCAAGCTAAA+GGG | 0.452153 | 2.4:-10164113 | MS.gene31458:CDS |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2.4:-10167063 | MS.gene31458:CDS |
| TCTACTTTGGTTGAAGAAGA+AGG | 0.464564 | 2.4:+10167762 | None:intergenic |
| TCACCTTTGGATCATAGTTA+GGG | 0.469862 | 2.4:+10167670 | None:intergenic |
| ATTTCAAGATCCCAGAATTG+AGG | 0.481933 | 2.4:+10165201 | None:intergenic |
| GGAAACACAACCTCAATTCT+GGG | 0.497186 | 2.4:-10165211 | MS.gene31458:CDS |
| TGCTGAGCTAGGCATGTTGA+AGG | 0.508960 | 2.4:-10164195 | MS.gene31458:intron |
| TCATCTACTTGATCAGGTAA+TGG | 0.516045 | 2.4:+10167216 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2.4:-10166911 | MS.gene31458:intron |
| AGCTAAGCTAGACATGTTGA+AGG | 0.522464 | 2.4:-10164141 | MS.gene31458:CDS |
| TTGTGTTTCCACATTGCTCA+CGG | 0.538142 | 2.4:+10165224 | None:intergenic |
| TATATATACCTGAGCATGTA+CGG | 0.538419 | 2.4:+10166903 | None:intergenic |
| ATTTGAGCTAGTCAAGCTAA+AGG | 0.543971 | 2.4:-10164114 | MS.gene31458:CDS |
| TACAAGTCATTGTAACATGT+GGG | 0.544345 | 2.4:-10167032 | MS.gene31458:CDS |
| TTGAAGGGTGGAGCTGAGCT+AGG | 0.553003 | 2.4:-10164179 | MS.gene31458:CDS |
| TCGACCTGAACGGTGAAGCT+GGG | 0.558540 | 2.4:-10164085 | MS.gene31458:CDS |
| AGATTGAAAGCATTTGTGGA+AGG | 0.584279 | 2.4:-10165249 | MS.gene31458:CDS |
| CTACAAGTCATTGTAACATG+TGG | 0.589705 | 2.4:-10167033 | MS.gene31458:CDS |
| TCTCCCTAACTATGATCCAA+AGG | 0.591025 | 2.4:-10167673 | MS.gene31458:intron |
| TTGAGCTAGTCAAGCTAAAG+GGG | 0.591345 | 2.4:-10164112 | MS.gene31458:CDS |
| CCAAATCGTAACAAAGATTG+CGG | 0.605051 | 2.4:+10165291 | None:intergenic |
| AAGCTGGGAGAGCATGGTGA+AGG | 0.612141 | 2.4:-10164070 | None:intergenic |
| AGCTGAGCTAGGTATGCTGA+AGG | 0.624744 | 2.4:-10164168 | MS.gene31458:CDS |
| AATAAGAGATCACGTGATGG+TGG | 0.625950 | 2.4:-10167120 | MS.gene31458:CDS |
| TGTTACAATGACTTGTAGAG+TGG | 0.628096 | 2.4:+10167038 | None:intergenic |
| ATTACCTGATCAAGTAGATG+AGG | 0.635272 | 2.4:-10167214 | MS.gene31458:CDS |
| AAGCTAGACATGTTGAAGGG+TGG | 0.644479 | 2.4:-10164137 | MS.gene31458:CDS |
| ACGGTGAAGCTGGGAGAGCA+TGG | 0.655402 | 2.4:-10164076 | MS.gene31458:CDS |
| GCTAAGCTAGACATGTTGAA+GGG | 0.660132 | 2.4:-10164140 | MS.gene31458:CDS |
| GAGCTAGGTATGCTGAAGGG+TGG | 0.668247 | 2.4:-10164164 | MS.gene31458:CDS |
| GGAAATAAGAGATCACGTGA+TGG | 0.672227 | 2.4:-10167123 | MS.gene31458:CDS |
| GAGCTAGGCATGTTGAAGGG+TGG | 0.679340 | 2.4:-10164191 | MS.gene31458:intron |
| ACAAGTCATTGTAACATGTG+GGG | 0.680252 | 2.4:-10167031 | MS.gene31458:CDS |
| GCTGAGCTAGGCATGTTGAA+GGG | 0.691751 | 2.4:-10164194 | MS.gene31458:intron |
| TAAATGGATCAAAATCAACA+AGG | 0.698469 | 2.4:-10167792 | MS.gene31458:CDS |
| GCTGAGCTAGGTATGCTGAA+GGG | 0.699239 | 2.4:-10164167 | MS.gene31458:CDS |
| ATGGATCAAAATCAACAAGG+AGG | 0.707629 | 2.4:-10167789 | MS.gene31458:CDS |
| TGAGCTAGTCAAGCTAAAGG+GGG | 0.709279 | 2.4:-10164111 | MS.gene31458:CDS |
| ACTGCATGAAGAAAACGTCG+AGG | 0.726422 | 2.4:-10166971 | MS.gene31458:CDS |
| GGAAGGATCCGTGAGCAATG+TGG | 0.734055 | 2.4:-10165232 | MS.gene31458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTAATAAAATTT+TGG | - | chr2.4:10166895-10166914 | MS.gene31458:intron | 0.0% |
| !!! | TATTTTATTTTATAAGCTAA+GGG | - | chr2.4:10164221-10164240 | MS.gene31458:intron | 10.0% |
| !!! | TTATTGCAATAAATTTTATA+CGG | + | chr2.4:10165504-10165523 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTTATAAGCTA+AGG | - | chr2.4:10164220-10164239 | MS.gene31458:intron | 10.0% |
| !! | AAATCCAAAAACTTAAAAAA+TGG | - | chr2.4:10166236-10166255 | MS.gene31458:intron | 15.0% |
| !! | TAAAATAAAAAAATCACCTT+TGG | + | chr2.4:10164208-10164227 | None:intergenic | 15.0% |
| !! | TCTTGTCAAAAAAAAAAAAA+AGG | - | chr2.4:10165933-10165952 | MS.gene31458:intron | 15.0% |
| !! | TGTTAATTAATTAAAAGAAG+AGG | + | chr2.4:10164540-10164559 | None:intergenic | 15.0% |
| !! | TTCAATGTAAGAATAAAATT+GGG | - | chr2.4:10167102-10167121 | MS.gene31458:CDS | 15.0% |
| !! | TTGAATAACACATATTAATT+TGG | - | chr2.4:10164589-10164608 | MS.gene31458:intron | 15.0% |
| !! | TTTCAATGTAAGAATAAAAT+TGG | - | chr2.4:10167101-10167120 | MS.gene31458:CDS | 15.0% |
| !!! | AAAAAAACTTTTGTAGTATT+TGG | - | chr2.4:10167073-10167092 | MS.gene31458:CDS | 15.0% |
| !!! | ATTTCCATTTTTTAAGTTTT+TGG | + | chr2.4:10166243-10166262 | None:intergenic | 15.0% |
| !!! | TATCAATTGTTTCTATTTTA+GGG | - | chr2.4:10165243-10165262 | MS.gene31458:CDS | 15.0% |
| !!! | TTATCAATTGTTTCTATTTT+AGG | - | chr2.4:10165242-10165261 | MS.gene31458:CDS | 15.0% |
| !!! | TTGTTATTGCAATAAATTTT+AGG | + | chr2.4:10165447-10165466 | None:intergenic | 15.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2.4:10164798-10164817 | MS.gene31458:intron | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2.4:10164799-10164818 | MS.gene31458:intron | 20.0% |
| !! | AAATGACATGTCATAAAAAA+TGG | + | chr2.4:10166039-10166058 | None:intergenic | 20.0% |
| !! | AAGAAAAAAATGTTAGATCA+TGG | + | chr2.4:10166119-10166138 | None:intergenic | 20.0% |
| !! | AATGACATGTCATAAAAAAT+GGG | + | chr2.4:10166038-10166057 | None:intergenic | 20.0% |
| !! | AATTCTGAATATATTCTTGT+AGG | + | chr2.4:10167014-10167033 | None:intergenic | 20.0% |
| !! | ATTCTGAATATATTCTTGTA+GGG | + | chr2.4:10167013-10167032 | None:intergenic | 20.0% |
| !! | TAACTTCACAGAAAATAAAA+TGG | + | chr2.4:10164864-10164883 | None:intergenic | 20.0% |
| !! | TATATATATACATACACACA+TGG | - | chr2.4:10164974-10164993 | MS.gene31458:intron | 20.0% |
| !! | TATTTCTTAACTTATGTCTA+AGG | - | chr2.4:10165996-10166015 | MS.gene31458:intron | 20.0% |
| !!! | AAATGATTGATTCATAATCA+AGG | - | chr2.4:10166862-10166881 | MS.gene31458:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2.4:10164799-10164818 | None:intergenic | 20.0% |
| !!! | CAAAAGTTTTTTTTTTGTGA+CGG | + | chr2.4:10167066-10167085 | None:intergenic | 20.0% |
| !!! | CAATTTTGAAAATTTAGTGT+AGG | - | chr2.4:10165721-10165740 | MS.gene31458:intron | 20.0% |
| !!! | TGTTATTTTTCATTTAATGC+AGG | - | chr2.4:10164612-10164631 | MS.gene31458:intron | 20.0% |
| !!! | TTATTGCAATAAATTTTAGG+AGG | + | chr2.4:10165444-10165463 | None:intergenic | 20.0% |
| !!! | TTTTGTAAACACCTTTTATT+TGG | + | chr2.4:10164425-10164444 | None:intergenic | 20.0% |
| ! | AAATGTTAGATCATGGTTTA+TGG | + | chr2.4:10166112-10166131 | None:intergenic | 25.0% |
| ! | ACACTCTAATAAGTGTAAAA+TGG | + | chr2.4:10164475-10164494 | None:intergenic | 25.0% |
| ! | ACATATATGCTATACATACA+TGG | + | chr2.4:10166979-10166998 | None:intergenic | 25.0% |
| ! | ACATATCACTATTGTTCTTT+GGG | - | chr2.4:10165102-10165121 | MS.gene31458:intron | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | - | chr2.4:10164717-10164736 | MS.gene31458:intron | 25.0% |
| ! | ATCTAGTTACTTATATAGAG+AGG | + | chr2.4:10165368-10165387 | None:intergenic | 25.0% |
| ! | CAAACATTATATTTGTCTCT+AGG | + | chr2.4:10164693-10164712 | None:intergenic | 25.0% |
| ! | CAATTGTCACATATGTTTAA+CGG | - | chr2.4:10164396-10164415 | MS.gene31458:intron | 25.0% |
| ! | CGATTTAATCTCATATATGA+TGG | + | chr2.4:10165600-10165619 | None:intergenic | 25.0% |
| ! | CTTTAATCTATTCTTCATCA+AGG | + | chr2.4:10166742-10166761 | None:intergenic | 25.0% |
| ! | GAATATACATATGAATGTGA+TGG | + | chr2.4:10164262-10164281 | None:intergenic | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2.4:10164718-10164737 | MS.gene31458:intron | 25.0% |
| ! | GAGTACCTATATATTCATAT+AGG | - | chr2.4:10164510-10164529 | MS.gene31458:intron | 25.0% |
| ! | GTGAACCTATATGAATATAT+AGG | + | chr2.4:10164518-10164537 | None:intergenic | 25.0% |
| ! | TACATATCACTATTGTTCTT+TGG | - | chr2.4:10165101-10165120 | MS.gene31458:intron | 25.0% |
| ! | TATAAAAGATGACACTTAGA+AGG | + | chr2.4:10167261-10167280 | None:intergenic | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2.4:10164915-10164934 | MS.gene31458:intron | 25.0% |
| ! | TCTAGTTACTTATATAGAGA+GGG | + | chr2.4:10165367-10165386 | None:intergenic | 25.0% |
| ! | TTCATATGTATATTCATGTG+AGG | - | chr2.4:10164267-10164286 | MS.gene31458:intron | 25.0% |
| ! | TTCTGAATATATTCTTGTAG+GGG | + | chr2.4:10167012-10167031 | None:intergenic | 25.0% |
| ! | TTTAACGGTTTCCAAATAAA+AGG | - | chr2.4:10164411-10164430 | MS.gene31458:intron | 25.0% |
| !! | AATAAATTTTATACGGTAGC+AGG | + | chr2.4:10165497-10165516 | None:intergenic | 25.0% |
| !! | CTCTAAAAAGCTAGAATAAA+TGG | - | chr2.4:10167224-10167243 | MS.gene31458:CDS | 25.0% |
| !! | GAAGAATAGATTAAAGTATC+TGG | - | chr2.4:10166746-10166765 | MS.gene31458:intron | 25.0% |
| !! | GTCTTAACAATATTTTGTGA+AGG | - | chr2.4:10166468-10166487 | MS.gene31458:intron | 25.0% |
| !! | GTTAGTATGTGTTTTTCTAA+AGG | + | chr2.4:10165812-10165831 | None:intergenic | 25.0% |
| !! | GTTATTCAATGAAGCTTTTT+AGG | - | chr2.4:10167185-10167204 | MS.gene31458:CDS | 25.0% |
| !!! | AATTTTAGGAGGAAAAAATC+AGG | + | chr2.4:10165433-10165452 | None:intergenic | 25.0% |
| !!! | CTAATATTTTTGGTACCTTT+GGG | - | chr2.4:10166776-10166795 | MS.gene31458:intron | 25.0% |
| !!! | GGTCGATTTTTTTTTTTTAC+AGG | + | chr2.4:10164318-10164337 | None:intergenic | 25.0% |
| !!! | TAATATTTTTGGTACCTTTG+GGG | - | chr2.4:10166777-10166796 | MS.gene31458:intron | 25.0% |
| !!! | TCTAATATTTTTGGTACCTT+TGG | - | chr2.4:10166775-10166794 | MS.gene31458:intron | 25.0% |
| !!! | TGGATCGATTCTAATATTTT+TGG | - | chr2.4:10166766-10166785 | MS.gene31458:intron | 25.0% |
| AACAAATAACCTCCATCAAA+GGG | - | chr2.4:10165522-10165541 | MS.gene31458:intron | 30.0% | |
| AACGATCTTTCTATCTACTT+TGG | + | chr2.4:10164116-10164135 | None:intergenic | 30.0% | |
| AGCCAAAAAACTTGAATAGT+GGG | - | chr2.4:10165018-10165037 | MS.gene31458:intron | 30.0% | |
| ATATATAGGTACTCTACTTG+TGG | + | chr2.4:10164504-10164523 | None:intergenic | 30.0% | |
| CATCTAAAAAGAGTTCCATT+AGG | + | chr2.4:10167300-10167319 | None:intergenic | 30.0% | |
| TAACAAATAACCTCCATCAA+AGG | - | chr2.4:10165521-10165540 | MS.gene31458:intron | 30.0% | |
| TAATTGCAGTTCCTTCAATA+CGG | - | chr2.4:10165468-10165487 | MS.gene31458:intron | 30.0% | |
| TACAAGTCATTGTAACATGT+GGG | - | chr2.4:10164830-10164849 | MS.gene31458:intron | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | + | chr2.4:10164156-10164175 | None:intergenic | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | + | chr2.4:10164962-10164981 | None:intergenic | 30.0% | |
| TCATCACTTTATTGACCTAA+TGG | - | chr2.4:10167282-10167301 | MS.gene31458:intron | 30.0% | |
| TCTATTCTTCATCAAGGATT+AGG | + | chr2.4:10166736-10166755 | None:intergenic | 30.0% | |
| TTAACACTATAAGCTCTTCT+TGG | - | chr2.4:10164565-10164584 | MS.gene31458:intron | 30.0% | |
| ! | TTGATGATAGATGCTAATGA+TGG | + | chr2.4:10165667-10165686 | None:intergenic | 30.0% |
| !! | ATTCAATGAAGCTTTTTAGG+AGG | - | chr2.4:10167188-10167207 | MS.gene31458:CDS | 30.0% |
| !! | TCCTCATAAGAAGTGTTTAA+TGG | + | chr2.4:10167439-10167458 | None:intergenic | 30.0% |
| !!! | CAATTTTATTGATTCCCCAA+AGG | + | chr2.4:10166794-10166813 | None:intergenic | 30.0% |
| !!! | TTTTGGTGTCCCTATAAAAT+TGG | - | chr2.4:10166912-10166931 | MS.gene31458:CDS | 30.0% |
| ACAAGTCATTGTAACATGTG+GGG | - | chr2.4:10164831-10164850 | MS.gene31458:intron | 35.0% | |
| ATATTCCGAACTGAGTTCTA+GGG | - | chr2.4:10166205-10166224 | MS.gene31458:intron | 35.0% | |
| ATCACCTTTGGATCATAGTT+AGG | + | chr2.4:10164196-10164215 | None:intergenic | 35.0% | |
| ATGGATCAAAATCAACAAGG+AGG | - | chr2.4:10164073-10164092 | MS.gene31458:CDS | 35.0% | |
| ATGGCAAATCCTAAAGAACT+AGG | + | chr2.4:10165285-10165304 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2.4:10164648-10164667 | MS.gene31458:intron | 35.0% | |
| ATTTCAAGATCCCAGAATTG+AGG | + | chr2.4:10166664-10166683 | None:intergenic | 35.0% | |
| ATTTGAGCTAGTCAAGCTAA+AGG | - | chr2.4:10167748-10167767 | MS.gene31458:CDS | 35.0% | |
| CCAAAAAACTTGAATAGTGG+GGG | - | chr2.4:10165020-10165039 | MS.gene31458:intron | 35.0% | |
| CCAAATCGTAACAAAGATTG+CGG | + | chr2.4:10166574-10166593 | None:intergenic | 35.0% | |
| CCAATCTCAAAGAAAACTCA+AGG | + | chr2.4:10164339-10164358 | None:intergenic | 35.0% | |
| CTACAAGTCATTGTAACATG+TGG | - | chr2.4:10164829-10164848 | MS.gene31458:intron | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | + | chr2.4:10164168-10164187 | None:intergenic | 35.0% | |
| GAGCCAAAAAACTTGAATAG+TGG | - | chr2.4:10165017-10165036 | MS.gene31458:intron | 35.0% | |
| GCCAAAAAACTTGAATAGTG+GGG | - | chr2.4:10165019-10165038 | MS.gene31458:intron | 35.0% | |
| GCCATTAAACACTTCTTATG+AGG | - | chr2.4:10167435-10167454 | MS.gene31458:intron | 35.0% | |
| TATATTCCGAACTGAGTTCT+AGG | - | chr2.4:10166204-10166223 | MS.gene31458:intron | 35.0% | |
| TCAAGGATTAGGTAAACTCT+TGG | + | chr2.4:10166725-10166744 | None:intergenic | 35.0% | |
| TCACCTTTGGATCATAGTTA+GGG | + | chr2.4:10164195-10164214 | None:intergenic | 35.0% | |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2.4:10164649-10164668 | None:intergenic | 35.0% | |
| TCTACTTTGGTTGAAGAAGA+AGG | + | chr2.4:10164103-10164122 | None:intergenic | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2.4:10164919-10164938 | MS.gene31458:intron | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | - | chr2.4:10166678-10166697 | MS.gene31458:intron | 35.0% | |
| TGGCAAATCCTAAAGAACTA+GGG | + | chr2.4:10165284-10165303 | None:intergenic | 35.0% | |
| TTCACTTAGATAGTAACGTG+AGG | - | chr2.4:10167467-10167486 | MS.gene31458:intron | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | - | chr2.4:10166677-10166696 | MS.gene31458:intron | 35.0% | |
| TTTGAGCTAGTCAAGCTAAA+GGG | - | chr2.4:10167749-10167768 | MS.gene31458:CDS | 35.0% | |
| ! | CGATTTGGAGAAACCAAAAT+AGG | - | chr2.4:10166586-10166605 | MS.gene31458:intron | 35.0% |
| ! | TGTTACAATGACTTGTAGAG+TGG | + | chr2.4:10164827-10164846 | None:intergenic | 35.0% |
| ! | TTTCAATCTCTCGCCTATTT+TGG | + | chr2.4:10166602-10166621 | None:intergenic | 35.0% |
| !! | AGATTGAAAGCATTTGTGGA+AGG | - | chr2.4:10166613-10166632 | MS.gene31458:intron | 35.0% |
| !! | ATCCAGAGCACCAATTTTAT+AGG | + | chr2.4:10166925-10166944 | None:intergenic | 35.0% |
| !! | CAATTCTGGGATCTTGAAAT+TGG | - | chr2.4:10166664-10166683 | MS.gene31458:intron | 35.0% |
| !! | TCCAGAGCACCAATTTTATA+GGG | + | chr2.4:10166924-10166943 | None:intergenic | 35.0% |
| !!! | CCTTGAGTTTTCTTTGAGAT+TGG | - | chr2.4:10164336-10164355 | MS.gene31458:intron | 35.0% |
| AACATCAACCGTACAATCAG+AGG | + | chr2.4:10165779-10165798 | None:intergenic | 40.0% | |
| AATAAGAGATCACGTGATGG+TGG | - | chr2.4:10164742-10164761 | MS.gene31458:intron | 40.0% | |
| AGCTAAGCTAGACATGTTGA+AGG | - | chr2.4:10167721-10167740 | MS.gene31458:CDS | 40.0% | |
| ATCCTAAGCTAAGCTTAGCT+CGG | + | chr2.4:10167528-10167547 | None:intergenic | 40.0% | |
| ATCTTCCCTAGAACTCAGTT+CGG | + | chr2.4:10166213-10166232 | None:intergenic | 40.0% | |
| ATGACACTTAGAAGGCAACA+CGG | + | chr2.4:10167253-10167272 | None:intergenic | 40.0% | |
| ATTGCCTCATCTACTTGATC+AGG | + | chr2.4:10164655-10164674 | None:intergenic | 40.0% | |
| CCGCAATCTTTGTTACGATT+TGG | - | chr2.4:10166571-10166590 | MS.gene31458:intron | 40.0% | |
| CTAGCTCATCTTGACAATTC+AGG | + | chr2.4:10167607-10167626 | None:intergenic | 40.0% | |
| CTGAATTGTCAAGATGAGCT+AGG | - | chr2.4:10167605-10167624 | MS.gene31458:intron | 40.0% | |
| GCTAAGCTAGACATGTTGAA+GGG | - | chr2.4:10167722-10167741 | MS.gene31458:CDS | 40.0% | |
| GCTTAGCTTAGGATGTTGAA+TGG | - | chr2.4:10167534-10167553 | MS.gene31458:intron | 40.0% | |
| GGAAACACAACCTCAATTCT+GGG | - | chr2.4:10166651-10166670 | MS.gene31458:intron | 40.0% | |
| GGAAATAAGAGATCACGTGA+TGG | - | chr2.4:10164739-10164758 | MS.gene31458:intron | 40.0% | |
| GTATGTTGCAAACCCTTTGA+TGG | + | chr2.4:10165537-10165556 | None:intergenic | 40.0% | |
| GTGTTGTGTGTGTGTATTCA+TGG | + | chr2.4:10166360-10166379 | None:intergenic | 40.0% | |
| TAGCTTAGGATGTTGAATGG+TGG | - | chr2.4:10167537-10167556 | MS.gene31458:intron | 40.0% | |
| TCTCCCTAACTATGATCCAA+AGG | - | chr2.4:10164189-10164208 | MS.gene31458:intron | 40.0% | |
| TGGAAACACAACCTCAATTC+TGG | - | chr2.4:10166650-10166669 | MS.gene31458:intron | 40.0% | |
| TTGAGCTAGTCAAGCTAAAG+GGG | - | chr2.4:10167750-10167769 | MS.gene31458:CDS | 40.0% | |
| TTGTGTTTCCACATTGCTCA+CGG | + | chr2.4:10166641-10166660 | None:intergenic | 40.0% | |
| ! | ACATACTAACTTGTGCCCTA+TGG | - | chr2.4:10165822-10165841 | MS.gene31458:intron | 40.0% |
| ! | CATACTAACTTGTGCCCTAT+GGG | - | chr2.4:10165823-10165842 | MS.gene31458:intron | 40.0% |
| ! | GTTCTTTGGGAAATGCTAAC+AGG | - | chr2.4:10165115-10165134 | MS.gene31458:intron | 40.0% |
| ! | TAGCAAGACCCTAGTTCTTT+AGG | - | chr2.4:10165273-10165292 | MS.gene31458:CDS | 40.0% |
| ! | TCCCTATAAAATTGGTGCTC+TGG | - | chr2.4:10166920-10166939 | MS.gene31458:CDS | 40.0% |
| ! | TTGAATGGTGGAAATGAGCT+TGG | - | chr2.4:10167549-10167568 | MS.gene31458:intron | 40.0% |
| !! | CGAGAGATTGAAAGCATTTG+TGG | - | chr2.4:10166609-10166628 | MS.gene31458:intron | 40.0% |
| !!! | CCCCCACTATTCAAGTTTTT+TGG | + | chr2.4:10165023-10165042 | None:intergenic | 40.0% |
| AAATGCTAACAGGCGCTCTT+AGG | - | chr2.4:10165125-10165144 | MS.gene31458:intron | 45.0% | |
| AAGATGAGCTAGGTGAGTTG+TGG | - | chr2.4:10167615-10167634 | MS.gene31458:intron | 45.0% | |
| AAGCTAGACATGTTGAAGGG+TGG | - | chr2.4:10167725-10167744 | MS.gene31458:CDS | 45.0% | |
| AATGCTAACAGGCGCTCTTA+GGG | - | chr2.4:10165126-10165145 | MS.gene31458:intron | 45.0% | |
| ACGAAGGAGTTGCATAGAGA+AGG | + | chr2.4:10167351-10167370 | None:intergenic | 45.0% | |
| ACTCCACATGTCATGTACGA+AGG | + | chr2.4:10167367-10167386 | None:intergenic | 45.0% | |
| ACTCCTTCGTACATGACATG+TGG | - | chr2.4:10167361-10167380 | MS.gene31458:intron | 45.0% | |
| ACTGCATGAAGAAAACGTCG+AGG | - | chr2.4:10164891-10164910 | MS.gene31458:intron | 45.0% | |
| ATCAACCGTACAATCAGAGG+CGG | + | chr2.4:10165776-10165795 | None:intergenic | 45.0% | |
| CTGCATTGTGGAACTGAGTT+AGG | - | chr2.4:10167576-10167595 | MS.gene31458:intron | 45.0% | |
| GGTCTAATTGTACGCAGTAG+CGG | - | chr2.4:10164995-10165014 | MS.gene31458:intron | 45.0% | |
| TAGATGTCCAAGCCCATTAG+TGG | - | chr2.4:10167314-10167333 | MS.gene31458:intron | 45.0% | |
| TCGTACATGACATGTGGAGT+TGG | - | chr2.4:10167367-10167386 | MS.gene31458:intron | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | - | chr2.4:10164951-10164970 | MS.gene31458:intron | 45.0% | |
| TGAGCTAGGCATGACTTGAA+TGG | - | chr2.4:10167641-10167660 | MS.gene31458:intron | 45.0% | |
| TGAGCTAGTCAAGCTAAAGG+GGG | - | chr2.4:10167751-10167770 | MS.gene31458:CDS | 45.0% | |
| TGTTGCAAACCCTTTGATGG+AGG | + | chr2.4:10165534-10165553 | None:intergenic | 45.0% | |
| TTGAATGGTCATGCTGAGCT+AGG | - | chr2.4:10167656-10167675 | MS.gene31458:intron | 45.0% | |
| ! | GAAGCTCTAGTTGACCTCAA+TGG | - | chr2.4:10167497-10167516 | MS.gene31458:intron | 45.0% |
| !! | TATTTAAATAAATACATATT+TGG | + | chr2.4:10166331-10166350 | None:intergenic | 5.0% |
| !!! | TATTTAATATTTTCAAAAAA+TGG | + | chr2.4:10165304-10165323 | None:intergenic | 5.0% |
| AACTTGTGCCCTATGGGCTT+AGG | - | chr2.4:10165829-10165848 | MS.gene31458:intron | 50.0% | |
| ACTTGTGCCCTAAGCCCATA+GGG | + | chr2.4:10165840-10165859 | None:intergenic | 50.0% | |
| ACTTGTGCCCTATGGGCTTA+GGG | - | chr2.4:10165830-10165849 | MS.gene31458:intron | 50.0% | |
| AGCCACACACAAGGTTGTGT+GGG | + | chr2.4:10165753-10165772 | None:intergenic | 50.0% | |
| AGCCGAGCTAAGCTTAGCTT+AGG | - | chr2.4:10167523-10167542 | MS.gene31458:intron | 50.0% | |
| AGCTGAGCTAGGTATGCTGA+AGG | - | chr2.4:10167694-10167713 | MS.gene31458:CDS | 50.0% | |
| GAGCAGCCAACTCCACTAAT+GGG | + | chr2.4:10167329-10167348 | None:intergenic | 50.0% | |
| GCTGAGCTAGGCATGTTGAA+GGG | - | chr2.4:10167668-10167687 | MS.gene31458:intron | 50.0% | |
| GCTGAGCTAGGTATGCTGAA+GGG | - | chr2.4:10167695-10167714 | MS.gene31458:CDS | 50.0% | |
| GTAGCAGGCAACCGTATTGA+AGG | + | chr2.4:10165482-10165501 | None:intergenic | 50.0% | |
| TCCAAGCCCATTAGTGGAGT+TGG | - | chr2.4:10167320-10167339 | MS.gene31458:intron | 50.0% | |
| TGCTGAGCTAGGCATGTTGA+AGG | - | chr2.4:10167667-10167686 | MS.gene31458:intron | 50.0% | |
| ! | AGCCATGAGCATTGTCGAGA+GGG | + | chr2.4:10166954-10166973 | None:intergenic | 50.0% |
| ! | TAGCCATGAGCATTGTCGAG+AGG | + | chr2.4:10166955-10166974 | None:intergenic | 50.0% |
| ! | TTAGCTCGGCTTGACCATTG+AGG | + | chr2.4:10167514-10167533 | None:intergenic | 50.0% |
| AAGGGGGAGTTCGACCTGAA+CGG | - | chr2.4:10167767-10167786 | MS.gene31458:CDS | 55.0% | |
| AGCCCACACAACCTTGTGTG+TGG | - | chr2.4:10165748-10165767 | MS.gene31458:intron | 55.0% | |
| CACTTGTGCCCTAAGCCCAT+AGG | + | chr2.4:10165841-10165860 | None:intergenic | 55.0% | |
| GAGCCACACACAAGGTTGTG+TGG | + | chr2.4:10165754-10165773 | None:intergenic | 55.0% | |
| GAGCTAGGCATGTTGAAGGG+TGG | - | chr2.4:10167671-10167690 | MS.gene31458:intron | 55.0% | |
| GAGCTAGGTATGCTGAAGGG+TGG | - | chr2.4:10167698-10167717 | MS.gene31458:CDS | 55.0% | |
| GAGCTTGGCATGCTGCATTG+TGG | - | chr2.4:10167564-10167583 | MS.gene31458:intron | 55.0% | |
| GGAAGGATCCGTGAGCAATG+TGG | - | chr2.4:10166630-10166649 | MS.gene31458:intron | 55.0% | |
| GGAGCAGCCAACTCCACTAA+TGG | + | chr2.4:10167330-10167349 | None:intergenic | 55.0% | |
| GTGAGTTGTGGAGCTGAGCT+AGG | - | chr2.4:10167627-10167646 | MS.gene31458:intron | 55.0% | |
| TCGACCTGAACGGTGAAGCT+GGG | - | chr2.4:10167777-10167796 | MS.gene31458:CDS | 55.0% | |
| TGGCTCCGCCTCTGATTGTA+CGG | - | chr2.4:10165768-10165787 | MS.gene31458:intron | 55.0% | |
| TTCGACCTGAACGGTGAAGC+TGG | - | chr2.4:10167776-10167795 | MS.gene31458:CDS | 55.0% | |
| TTGAAGGGTGGAGCTGAGCT+AGG | - | chr2.4:10167683-10167702 | MS.gene31458:CDS | 55.0% | |
| ! | ATGAGCATTGTCGAGAGGGG+CGG | + | chr2.4:10166950-10166969 | None:intergenic | 55.0% |
| ! | GCCATGAGCATTGTCGAGAG+GGG | + | chr2.4:10166953-10166972 | None:intergenic | 55.0% |
| !! | GCCAACTCCACTAATGGGCT+TGG | + | chr2.4:10167324-10167343 | None:intergenic | 55.0% |
| ACGGTGAAGCTGGGAGAGCA+TGG | - | chr2.4:10167786-10167805 | MS.gene31458:CDS | 60.0% | |
| CTCTCCCAGCTTCACCGTTC+AGG | + | chr2.4:10167784-10167803 | None:intergenic | 60.0% | |
| GCCCCTCTCGACAATGCTCA+TGG | - | chr2.4:10166949-10166968 | MS.gene31458:CDS | 60.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | - | chr2.4:10164760-10164779 | MS.gene31458:intron | 60.0% | |
| CAGAGGCGGAGCCACACACA+AGG | + | chr2.4:10165762-10165781 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 10164073 | 10167811 | 10164073 | ID=MS.gene31458 |
| chr2.4 | mRNA | 10164073 | 10167811 | 10164073 | ID=MS.gene31458.t1;Parent=MS.gene31458 |
| chr2.4 | exon | 10167674 | 10167811 | 10167674 | ID=MS.gene31458.t1.exon1;Parent=MS.gene31458.t1 |
| chr2.4 | CDS | 10167674 | 10167811 | 10167674 | ID=cds.MS.gene31458.t1;Parent=MS.gene31458.t1 |
| chr2.4 | exon | 10166912 | 10167250 | 10166912 | ID=MS.gene31458.t1.exon2;Parent=MS.gene31458.t1 |
| chr2.4 | CDS | 10166912 | 10167250 | 10166912 | ID=cds.MS.gene31458.t1;Parent=MS.gene31458.t1 |
| chr2.4 | exon | 10165196 | 10165316 | 10165196 | ID=MS.gene31458.t1.exon3;Parent=MS.gene31458.t1 |
| chr2.4 | CDS | 10165196 | 10165316 | 10165196 | ID=cds.MS.gene31458.t1;Parent=MS.gene31458.t1 |
| chr2.4 | exon | 10164073 | 10164206 | 10164073 | ID=MS.gene31458.t1.exon4;Parent=MS.gene31458.t1 |
| chr2.4 | CDS | 10164073 | 10164206 | 10164073 | ID=cds.MS.gene31458.t1;Parent=MS.gene31458.t1 |
| Gene Sequence |
| Protein sequence |
