Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31459.t1 | KEH39148.1 | 88.2 | 221 | 20 | 4 | 1 | 217 | 1 | 219 | 1.80E-96 | 362.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31459.t1 | F4JIJ7 | 41.3 | 179 | 92 | 6 | 12 | 180 | 11 | 186 | 1.2e-24 | 114.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31459.t1 | A0A072VCG2 | 88.2 | 221 | 20 | 4 | 1 | 217 | 1 | 219 | 1.3e-96 | 362.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31459.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31459.t1 | MTR_2g090480 | 88.235 | 221 | 20 | 4 | 1 | 217 | 1 | 219 | 1.61e-135 | 379 |
| MS.gene31459.t1 | MTR_2g090440 | 84.404 | 218 | 32 | 2 | 1 | 217 | 1 | 217 | 1.60e-130 | 366 |
| MS.gene31459.t1 | MTR_2g090425 | 86.634 | 202 | 24 | 2 | 1 | 199 | 1 | 202 | 5.84e-122 | 349 |
| MS.gene31459.t1 | MTR_2g090500 | 85.465 | 172 | 24 | 1 | 46 | 217 | 60 | 230 | 1.13e-100 | 291 |
| MS.gene31459.t1 | MTR_4g078350 | 62.019 | 208 | 65 | 5 | 1 | 201 | 1 | 201 | 2.80e-84 | 249 |
| MS.gene31459.t1 | MTR_2g013920 | 43.103 | 174 | 91 | 4 | 10 | 181 | 5 | 172 | 8.07e-43 | 142 |
| MS.gene31459.t1 | MTR_2g090515 | 72.727 | 55 | 15 | 0 | 1 | 55 | 1 | 55 | 7.25e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31459.t1 | AT4G20970 | 39.665 | 179 | 95 | 5 | 12 | 180 | 11 | 186 | 5.37e-32 | 115 |
| MS.gene31459.t1 | AT1G10585 | 29.143 | 175 | 113 | 3 | 11 | 184 | 13 | 177 | 5.74e-16 | 73.2 |
| MS.gene31459.t1 | AT1G10586 | 26.316 | 171 | 115 | 3 | 11 | 180 | 13 | 173 | 5.19e-13 | 65.1 |
Find 46 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAATCTCTCACCTATTT+TGG | 0.175732 | 2.4:+10190789 | None:intergenic |
| CAATTCTGGGATCTTGAAAT+TGG | 0.214902 | 2.4:-10190724 | MS.gene31459:CDS |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2.4:-10191660 | MS.gene31459:CDS |
| GGAGAAGAAAGAAAGTTTAA+TGG | 0.269701 | 2.4:-10191861 | MS.gene31459:CDS |
| TGGAAACACAGCCTCAATTC+TGG | 0.278256 | 2.4:-10190738 | MS.gene31459:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.283108 | 2.4:-10191815 | MS.gene31459:CDS |
| CCGCAATCTTTGTTACGATT+TGG | 0.283657 | 2.4:-10190817 | MS.gene31459:CDS |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2.4:+10194574 | None:intergenic |
| TTTATGCTTCATCAAGGAAT+TGG | 0.353724 | 2.4:+10190655 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.362015 | 2.4:-10191860 | MS.gene31459:CDS |
| CTAAGTTTATATTTGTCTCT+AGG | 0.365336 | 2.4:+10191888 | None:intergenic |
| CGATTTGGAGAAACCAAAAT+AGG | 0.368419 | 2.4:-10190802 | MS.gene31459:CDS |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2.4:+10194586 | None:intergenic |
| AACGATCTTTCTTTCGACTT+TGG | 0.395490 | 2.4:+10194626 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2.4:-10191656 | MS.gene31459:CDS |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 2.4:-10190711 | MS.gene31459:CDS |
| TGAGAGATTGAAAGCATTTG+TGG | 0.405344 | 2.4:-10190779 | MS.gene31459:CDS |
| CTTTCGACTTTGGTTGAAGA+AGG | 0.411324 | 2.4:+10194636 | None:intergenic |
| TAATTTCACAGAAAATAAAA+TGG | 0.425918 | 2.4:+10191714 | None:intergenic |
| ATAGCCTCATCTACTTGATC+AGG | 0.429867 | 2.4:+10191926 | None:intergenic |
| TCAAGGAATTGGTAAACTCT+TGG | 0.445020 | 2.4:+10190666 | None:intergenic |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2.4:-10191776 | MS.gene31459:CDS |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 2.4:-10190710 | MS.gene31459:CDS |
| TCTTCATACCGTGCATGCTC+AGG | 0.472764 | 2.4:-10191624 | MS.gene31459:intron |
| GGAAACACAGCCTCAATTCT+GGG | 0.475798 | 2.4:-10190737 | MS.gene31459:CDS |
| ATCACCTTTGGATTATAGCT+AGG | 0.496982 | 2.4:+10194546 | None:intergenic |
| TCACCTTTGGATTATAGCTA+GGG | 0.515824 | 2.4:+10194547 | None:intergenic |
| TCATCTACTTGATCAGGTAA+TGG | 0.522136 | 2.4:+10191932 | None:intergenic |
| CTGTGTTTCCACATTGCTCA+CGG | 0.532278 | 2.4:+10190750 | None:intergenic |
| ATTTCAAGATCCCAGAATTG+AGG | 0.533997 | 2.4:+10190727 | None:intergenic |
| TACAAGTGATTGTAACATGT+GGG | 0.544345 | 2.4:-10191745 | MS.gene31459:CDS |
| AAGAAGAGATCACGTGGTGG+TGG | 0.554503 | 2.4:-10191833 | MS.gene31459:CDS |
| GACAAATATAAACTTAGCAA+AGG | 0.562346 | 2.4:-10191882 | MS.gene31459:CDS |
| AGATTGAAAGCATTTGTGGA+AGG | 0.584279 | 2.4:-10190775 | MS.gene31459:CDS |
| TATATATACCTGAGCATGCA+CGG | 0.590008 | 2.4:+10191616 | None:intergenic |
| CCAAATCGTAACAAAGATTG+CGG | 0.605051 | 2.4:+10190817 | None:intergenic |
| CTACAAGTGATTGTAACATG+TGG | 0.615945 | 2.4:-10191746 | MS.gene31459:CDS |
| TCTCCCTAGCTATAATCCAA+AGG | 0.625430 | 2.4:-10194550 | MS.gene31459:intron |
| TGTTACAATCACTTGTAGAG+TGG | 0.628540 | 2.4:+10191751 | None:intergenic |
| ATTACCTGATCAAGTAGATG+AGG | 0.636526 | 2.4:-10191930 | MS.gene31459:CDS |
| TCAATGGATCAAAATCAGCA+AGG | 0.641836 | 2.4:-10194666 | MS.gene31459:CDS |
| GGAAACAAGAAGAGATCACG+TGG | 0.724515 | 2.4:-10191839 | MS.gene31459:CDS |
| GGAAGGATCCGTGAGCAATG+TGG | 0.734055 | 2.4:-10190758 | MS.gene31459:CDS |
| ACAAGTGATTGTAACATGTG+GGG | 0.739715 | 2.4:-10191744 | MS.gene31459:CDS |
| AACAAGAAGAGATCACGTGG+TGG | 0.758686 | 2.4:-10191836 | MS.gene31459:CDS |
| ACTGCATGAAGAGAACGTCG+AGG | 0.768331 | 2.4:-10191684 | MS.gene31459:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTATTTTATTT+AGG | - | chr2.4:10191995-10192014 | MS.gene31459:intron | 0.0% |
| !! | AAAAAATATTAGATTGTAAT+TGG | + | chr2.4:10191487-10191506 | None:intergenic | 10.0% |
| !! | AAAAATATTAGATTGTAATT+GGG | + | chr2.4:10191486-10191505 | None:intergenic | 10.0% |
| !! | ATATATATATATATATAGAG+GGG | - | chr2.4:10191699-10191718 | MS.gene31459:CDS | 10.0% |
| !!! | AATTTTTTTTTTTGTTATGT+AGG | + | chr2.4:10193143-10193162 | None:intergenic | 10.0% |
| !!! | CATTTAAAATGTATATAATA+AGG | - | chr2.4:10191214-10191233 | MS.gene31459:intron | 10.0% |
| !! | AAAATATTAGATTGTAATTG+GGG | + | chr2.4:10191485-10191504 | None:intergenic | 15.0% |
| !! | AACACATATACTTATTAATT+TGG | - | chr2.4:10193340-10193359 | MS.gene31459:intron | 15.0% |
| !! | AGAAAAAAAAAGTTATATCA+TGG | + | chr2.4:10194050-10194069 | None:intergenic | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2.4:10193618-10193637 | None:intergenic | 15.0% |
| !! | TATATATATATATATAGAGG+GGG | - | chr2.4:10191700-10191719 | MS.gene31459:CDS | 15.0% |
| !! | TCAATTTGAATATTTGAATT+TGG | + | chr2.4:10191962-10191981 | None:intergenic | 15.0% |
| !!! | ACAAATTATTTAGTAGTTTT+TGG | - | chr2.4:10191012-10191031 | MS.gene31459:intron | 15.0% |
| !!! | TAAAAATATTGCAACATTTT+TGG | + | chr2.4:10194291-10194310 | None:intergenic | 15.0% |
| !!! | TAAACATAGAAATTTTGTAT+TGG | + | chr2.4:10193979-10193998 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAAAACGTAAC+TGG | - | chr2.4:10192539-10192558 | MS.gene31459:intron | 20.0% |
| !! | AAAAAATTGAAAACGTAACT+GGG | - | chr2.4:10192540-10192559 | MS.gene31459:intron | 20.0% |
| !! | AAAAACACGAAACTAAAAAA+TGG | - | chr2.4:10194216-10194235 | MS.gene31459:intron | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2.4:10193552-10193571 | MS.gene31459:intron | 20.0% |
| !! | AAAAGTTATATCATGGTTTA+TGG | + | chr2.4:10194043-10194062 | None:intergenic | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2.4:10193553-10193572 | MS.gene31459:intron | 20.0% |
| !! | AGAAAGACAAAAATAAAAAG+AGG | - | chr2.4:10192449-10192468 | MS.gene31459:intron | 20.0% |
| !! | ATTGTGAAAAAAAATGTTGA+AGG | + | chr2.4:10194415-10194434 | None:intergenic | 20.0% |
| !! | CATATATGTATATTCATTTG+AGG | - | chr2.4:10190833-10190852 | MS.gene31459:intron | 20.0% |
| !! | CCTATATATTCATTTCATAT+AGG | - | chr2.4:10193295-10193314 | MS.gene31459:intron | 20.0% |
| !! | CCTATATGAAATGAATATAT+AGG | + | chr2.4:10193298-10193317 | None:intergenic | 20.0% |
| !! | GAAAAAATAGTAAGAAAAAG+TGG | - | chr2.4:10191548-10191567 | MS.gene31459:intron | 20.0% |
| !! | TGACAAAAATAAAGAGAAAA+TGG | + | chr2.4:10193098-10193117 | None:intergenic | 20.0% |
| !! | TTCTTATTGAAGATTAAGAT+GGG | + | chr2.4:10191901-10191920 | None:intergenic | 20.0% |
| !! | TTGTGAAAAAAAATGTTGAA+GGG | + | chr2.4:10194414-10194433 | None:intergenic | 20.0% |
| !!! | AAATTATGCCTTGTTTAAAT+TGG | + | chr2.4:10192345-10192364 | None:intergenic | 20.0% |
| !!! | AACATCAAAAACTAGATTTT+TGG | - | chr2.4:10192254-10192273 | MS.gene31459:intron | 20.0% |
| !!! | AATTTCCTTTAGTTTTACAT+TGG | - | chr2.4:10192360-10192379 | MS.gene31459:intron | 20.0% |
| !!! | ACATCAAAAACTAGATTTTT+GGG | - | chr2.4:10192255-10192274 | MS.gene31459:intron | 20.0% |
| !!! | ATAATTTGTGAGAATATAGT+AGG | + | chr2.4:10191001-10191020 | None:intergenic | 20.0% |
| !!! | ATTGATTCTTTTGCAAAATA+TGG | + | chr2.4:10194388-10194407 | None:intergenic | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2.4:10193553-10193572 | None:intergenic | 20.0% |
| !!! | TCAATTAATTTCCAGATTTT+GGG | - | chr2.4:10192294-10192313 | MS.gene31459:intron | 20.0% |
| !!! | TGTTATTTTTCATTTAATGC+AGG | - | chr2.4:10193363-10193382 | MS.gene31459:intron | 20.0% |
| !!! | TTCAATTAATTTCCAGATTT+TGG | - | chr2.4:10192293-10192312 | MS.gene31459:intron | 20.0% |
| !!! | TTTATCACAGTTTGATTTTT+TGG | - | chr2.4:10192392-10192411 | MS.gene31459:intron | 20.0% |
| ! | AAAGAGAAAATGGATAAGTT+AGG | + | chr2.4:10193088-10193107 | None:intergenic | 25.0% |
| ! | AATTTACACTTAGAATGTAC+AGG | - | chr2.4:10192913-10192932 | MS.gene31459:intron | 25.0% |
| ! | AGTAAGAAAAAGTGGATAAA+CGG | - | chr2.4:10191556-10191575 | MS.gene31459:intron | 25.0% |
| ! | AGTTAACTCATGATTAACTT+TGG | + | chr2.4:10191320-10191339 | None:intergenic | 25.0% |
| ! | ATATATGCATATGAATGTGA+TGG | + | chr2.4:10190820-10190839 | None:intergenic | 25.0% |
| ! | ATATGTGACATTGTTCATTA+GGG | + | chr2.4:10194127-10194146 | None:intergenic | 25.0% |
| ! | ATTTACACTTAGAATGTACA+GGG | - | chr2.4:10192914-10192933 | MS.gene31459:intron | 25.0% |
| ! | CTAAGTTTATATTTGTCTCT+AGG | + | chr2.4:10193444-10193463 | None:intergenic | 25.0% |
| ! | CTCTAATTGTCAAATATTAC+AGG | - | chr2.4:10192189-10192208 | MS.gene31459:intron | 25.0% |
| ! | GAAATCCAATGTAAAACTAA+AGG | + | chr2.4:10192368-10192387 | None:intergenic | 25.0% |
| ! | GACAAATATAAACTTAGCAA+AGG | - | chr2.4:10193447-10193466 | MS.gene31459:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2.4:10193469-10193488 | MS.gene31459:intron | 25.0% |
| ! | GTTCTTATTGAAGATTAAGA+TGG | + | chr2.4:10191902-10191921 | None:intergenic | 25.0% |
| ! | TATATAGTTACCAATCTCAA+AGG | + | chr2.4:10190912-10190931 | None:intergenic | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2.4:10193669-10193688 | MS.gene31459:intron | 25.0% |
| ! | TGTACATTCTAAGTGTAAAT+TGG | + | chr2.4:10192914-10192933 | None:intergenic | 25.0% |
| ! | TTCCATATCACAAAACAAAA+AGG | - | chr2.4:10191929-10191948 | MS.gene31459:CDS | 25.0% |
| !! | AATCATGAGTTAACTACTTT+TGG | - | chr2.4:10191325-10191344 | MS.gene31459:intron | 25.0% |
| !! | CTCGGTTCTAATATTAAAAA+TGG | - | chr2.4:10192958-10192977 | MS.gene31459:intron | 25.0% |
| !! | TTATTTAGGACTCATATGTT+GGG | - | chr2.4:10192009-10192028 | MS.gene31459:intron | 25.0% |
| !! | TTTATTTAGGACTCATATGT+TGG | - | chr2.4:10192008-10192027 | MS.gene31459:intron | 25.0% |
| !! | TTTCTCAGTTCTAATACTTT+CGG | + | chr2.4:10192158-10192177 | None:intergenic | 25.0% |
| !!! | AACCATTGATGATTGTTTTA+TGG | - | chr2.4:10192086-10192105 | MS.gene31459:intron | 25.0% |
| !!! | AATTGGTTTTACATCAACAA+CGG | + | chr2.4:10192897-10192916 | None:intergenic | 25.0% |
| !!! | CAATGTCGTTTTTTTTTTAC+AGG | + | chr2.4:10190884-10190903 | None:intergenic | 25.0% |
| !!! | TCCAAATTGAGTTTTTTTGA+GGG | - | chr2.4:10194168-10194187 | MS.gene31459:intron | 25.0% |
| AAATTCACCAATATTCCCTA+AGG | + | chr2.4:10194018-10194037 | None:intergenic | 30.0% | |
| AACCTTTAGATCAAATCTAG+TGG | + | chr2.4:10192637-10192656 | None:intergenic | 30.0% | |
| AATTCACCAATATTCCCTAA+GGG | + | chr2.4:10194017-10194036 | None:intergenic | 30.0% | |
| AGCCATAGGATATAAATGTA+CGG | - | chr2.4:10191772-10191791 | MS.gene31459:CDS | 30.0% | |
| ATATATAGGTACTCTACTTG+TGG | + | chr2.4:10193284-10193303 | None:intergenic | 30.0% | |
| CAGATTCACCAATTTAAACA+AGG | - | chr2.4:10192334-10192353 | MS.gene31459:intron | 30.0% | |
| CATATGTGACATTGTTCATT+AGG | + | chr2.4:10194128-10194147 | None:intergenic | 30.0% | |
| CTAGTATTATGTATCACTAG+TGG | + | chr2.4:10191600-10191619 | None:intergenic | 30.0% | |
| CTCCATAAAACAATCATCAA+TGG | + | chr2.4:10192091-10192110 | None:intergenic | 30.0% | |
| CTGTAAAATATAGTCTCCAA+TGG | - | chr2.4:10192056-10192075 | MS.gene31459:intron | 30.0% | |
| GAAAGATCGTTGAGAAAAAT+AGG | - | chr2.4:10190715-10190734 | MS.gene31459:CDS | 30.0% | |
| GAAATTAAACAGATCACCTT+TGG | + | chr2.4:10190798-10190817 | None:intergenic | 30.0% | |
| GAATAGAGTTGCATCAAAAA+GGG | - | chr2.4:10192471-10192490 | MS.gene31459:intron | 30.0% | |
| GGAACACATGTGATATATAT+CGG | - | chr2.4:10191170-10191189 | MS.gene31459:intron | 30.0% | |
| GGAGAAGAAAGAAAGTTTAA+TGG | - | chr2.4:10193468-10193487 | MS.gene31459:intron | 30.0% | |
| GTAAGAAAAAGTGGATAAAC+GGG | - | chr2.4:10191557-10191576 | MS.gene31459:intron | 30.0% | |
| TAATATTATGTCACACACAC+TGG | - | chr2.4:10190932-10190951 | MS.gene31459:intron | 30.0% | |
| TAATTGAGGACCCTATAAAT+TGG | - | chr2.4:10193200-10193219 | MS.gene31459:intron | 30.0% | |
| TACAAGTGATTGTAACATGT+GGG | - | chr2.4:10193584-10193603 | MS.gene31459:intron | 30.0% | |
| TACATTAATATGTGCCCTTA+GGG | - | chr2.4:10194000-10194019 | MS.gene31459:intron | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | + | chr2.4:10190746-10190765 | None:intergenic | 30.0% | |
| TATGTATCACTAGTGGAAAA+CGG | + | chr2.4:10191593-10191612 | None:intergenic | 30.0% | |
| TCCCTCAAAAAAACTCAATT+TGG | + | chr2.4:10194172-10194191 | None:intergenic | 30.0% | |
| TGAAACGAATTGAATTCCTA+AGG | + | chr2.4:10191377-10191396 | None:intergenic | 30.0% | |
| TGGAATAGGAGAAATCAATT+TGG | - | chr2.4:10192502-10192521 | MS.gene31459:intron | 30.0% | |
| TTCATTAGGGTAAGAAATAG+CGG | + | chr2.4:10194114-10194133 | None:intergenic | 30.0% | |
| TTCCAATAAAATTGGAGACT+CGG | - | chr2.4:10192940-10192959 | MS.gene31459:intron | 30.0% | |
| ! | AAACTCCAAATTGAGTTGTA+GGG | - | chr2.4:10194191-10194210 | MS.gene31459:intron | 30.0% |
| ! | AATGTTATTTGCATGTGCAT+AGG | + | chr2.4:10193757-10193776 | None:intergenic | 30.0% |
| ! | AATTTTTAACATGTGCCCTA+AGG | + | chr2.4:10193880-10193899 | None:intergenic | 30.0% |
| ! | AGTCTCCAATTTTATTGGAA+CGG | + | chr2.4:10192940-10192959 | None:intergenic | 30.0% |
| ! | TACATGACTCTTTGTTGTAT+TGG | - | chr2.4:10192861-10192880 | MS.gene31459:intron | 30.0% |
| ! | TTGTCTTTCTAAAAAGTCCT+TGG | + | chr2.4:10192439-10192458 | None:intergenic | 30.0% |
| ! | TTTCAATCTCTCACCTATTT+TGG | + | chr2.4:10194543-10194562 | None:intergenic | 30.0% |
| ! | TTTTGGGCAAGACATATTTT+CGG | - | chr2.4:10192310-10192329 | MS.gene31459:intron | 30.0% |
| ! | TTTTTCCCTACAACTCAATT+TGG | + | chr2.4:10194199-10194218 | None:intergenic | 30.0% |
| !! | ATGAGTTAACTACTTTTGGT+CGG | - | chr2.4:10191329-10191348 | MS.gene31459:intron | 30.0% |
| !! | TTTGTTGTTGATAGATGTGT+GGG | - | chr2.4:10193057-10193076 | MS.gene31459:intron | 30.0% |
| !!! | AGCCTTTTTGTTTTGTGATA+TGG | + | chr2.4:10191934-10191953 | None:intergenic | 30.0% |
| !!! | CTCCAAATTGAGTTTTTTTG+AGG | - | chr2.4:10194167-10194186 | MS.gene31459:intron | 30.0% |
| !!! | TTTTGTTGTTGATAGATGTG+TGG | - | chr2.4:10193056-10193075 | MS.gene31459:intron | 30.0% |
| AAAAGCCCTCTCATTTGAAA+TGG | - | chr2.4:10192686-10192705 | MS.gene31459:intron | 35.0% | |
| AACGATCTTTCTTTCGACTT+TGG | + | chr2.4:10190706-10190725 | None:intergenic | 35.0% | |
| AATATGTCTTGCCCAAAATC+TGG | + | chr2.4:10192308-10192327 | None:intergenic | 35.0% | |
| ACAAGTGATTGTAACATGTG+GGG | - | chr2.4:10193585-10193604 | MS.gene31459:intron | 35.0% | |
| AGCACTTTGCCACTAAAATA+AGG | - | chr2.4:10191148-10191167 | MS.gene31459:intron | 35.0% | |
| AGCCACTAGATTTGATCTAA+AGG | - | chr2.4:10192632-10192651 | MS.gene31459:intron | 35.0% | |
| AGCTTCTGGGTTATTATAAG+AGG | - | chr2.4:10192109-10192128 | MS.gene31459:intron | 35.0% | |
| AGGGTCCTCAATTATTTGTA+GGG | + | chr2.4:10193194-10193213 | None:intergenic | 35.0% | |
| ATCAAGTGAGAGGAGTAATT+AGG | - | chr2.4:10191724-10191743 | MS.gene31459:CDS | 35.0% | |
| ATCACCTTTGGATTATAGCT+AGG | + | chr2.4:10190786-10190805 | None:intergenic | 35.0% | |
| ATGTATCACTAGTGGAAAAC+GGG | + | chr2.4:10191592-10191611 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2.4:10193399-10193418 | MS.gene31459:intron | 35.0% | |
| ATTGAAGATTAAGATGGGTG+TGG | + | chr2.4:10191896-10191915 | None:intergenic | 35.0% | |
| ATTTCAAGATCCCAGAATTG+AGG | + | chr2.4:10194605-10194624 | None:intergenic | 35.0% | |
| CATACCCCTACAAATAATTG+AGG | - | chr2.4:10193186-10193205 | MS.gene31459:intron | 35.0% | |
| CATATAGGTTCACTTCTTCT+TGG | - | chr2.4:10193310-10193329 | MS.gene31459:intron | 35.0% | |
| CCAAATCGTAACAAAGATTG+CGG | + | chr2.4:10194515-10194534 | None:intergenic | 35.0% | |
| CTACAAGTGATTGTAACATG+TGG | - | chr2.4:10193583-10193602 | MS.gene31459:intron | 35.0% | |
| CTCAATTATTTGTAGGGGTA+TGG | + | chr2.4:10193188-10193207 | None:intergenic | 35.0% | |
| GACCGTACATTTATATCCTA+TGG | + | chr2.4:10191777-10191796 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | + | chr2.4:10190758-10190777 | None:intergenic | 35.0% | |
| GCACTTTGCCACTAAAATAA+GGG | - | chr2.4:10191149-10191168 | MS.gene31459:intron | 35.0% | |
| GGAATAGAGTTGCATCAAAA+AGG | - | chr2.4:10192470-10192489 | MS.gene31459:intron | 35.0% | |
| GTACATTAATATGTGCCCTT+AGG | - | chr2.4:10193999-10194018 | MS.gene31459:intron | 35.0% | |
| TAGGGTCCTCAATTATTTGT+AGG | + | chr2.4:10193195-10193214 | None:intergenic | 35.0% | |
| TATATATACCTGAGCATGCA+CGG | + | chr2.4:10193716-10193735 | None:intergenic | 35.0% | |
| TCAAGTGAGAGGAGTAATTA+GGG | - | chr2.4:10191725-10191744 | MS.gene31459:CDS | 35.0% | |
| TCACCTTTGGATTATAGCTA+GGG | + | chr2.4:10190785-10190804 | None:intergenic | 35.0% | |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2.4:10193400-10193419 | None:intergenic | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2.4:10193673-10193692 | MS.gene31459:intron | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | - | chr2.4:10194619-10194638 | MS.gene31459:CDS | 35.0% | |
| TGACAATTAGAGCAGCAAAT+TGG | + | chr2.4:10192181-10192200 | None:intergenic | 35.0% | |
| TGCACTTAATTGAGACTTTG+TGG | + | chr2.4:10191079-10191098 | None:intergenic | 35.0% | |
| TGGTAAAGTGATTTAGGTGT+GGG | + | chr2.4:10191876-10191895 | None:intergenic | 35.0% | |
| TGGTATAATTGTTGGGATCT+AGG | + | chr2.4:10193168-10193187 | None:intergenic | 35.0% | |
| TGTGAGAATATAGTAGGTTG+AGG | + | chr2.4:10190995-10191014 | None:intergenic | 35.0% | |
| TGTTACAATCACTTGTAGAG+TGG | + | chr2.4:10193581-10193600 | None:intergenic | 35.0% | |
| TGTTGGGTTTCAACTTTCAA+AGG | - | chr2.4:10192025-10192044 | MS.gene31459:intron | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | - | chr2.4:10194618-10194637 | MS.gene31459:CDS | 35.0% | |
| ! | AACCGAGTCTCCAATTTTAT+TGG | + | chr2.4:10192945-10192964 | None:intergenic | 35.0% |
| ! | AAGTCACGAGTTAAGTTGTA+GGG | + | chr2.4:10193830-10193849 | None:intergenic | 35.0% |
| ! | AGAGGGCTTTTTAAATGAGA+GGG | + | chr2.4:10192677-10192696 | None:intergenic | 35.0% |
| ! | AGGGGTATGGTATAATTGTT+GGG | + | chr2.4:10193175-10193194 | None:intergenic | 35.0% |
| ! | CGATTTGGAGAAACCAAAAT+AGG | - | chr2.4:10194527-10194546 | MS.gene31459:intron | 35.0% |
| ! | GAAACTCCAAATTGAGTTGT+AGG | - | chr2.4:10194190-10194209 | MS.gene31459:intron | 35.0% |
| ! | GTGAGAATATAGTAGGTTGA+GGG | + | chr2.4:10190994-10191013 | None:intergenic | 35.0% |
| ! | TAAGTCACGAGTTAAGTTGT+AGG | + | chr2.4:10193831-10193850 | None:intergenic | 35.0% |
| ! | TAGGGGTATGGTATAATTGT+TGG | + | chr2.4:10193176-10193195 | None:intergenic | 35.0% |
| ! | TGAGAATATAGTAGGTTGAG+GGG | + | chr2.4:10190993-10191012 | None:intergenic | 35.0% |
| ! | TTTTTAAATGAGAGGGTGAG+AGG | + | chr2.4:10192670-10192689 | None:intergenic | 35.0% |
| !! | AGATTGAAAGCATTTGTGGA+AGG | - | chr2.4:10194554-10194573 | MS.gene31459:CDS | 35.0% |
| !! | CAATTCTGGGATCTTGAAAT+TGG | - | chr2.4:10194605-10194624 | MS.gene31459:CDS | 35.0% |
| !! | CATTGAGTTTCCTTTGAGAT+TGG | - | chr2.4:10190899-10190918 | MS.gene31459:intron | 35.0% |
| !! | CTTGTTAACTTGTGTCCTTA+GGG | - | chr2.4:10193862-10193881 | MS.gene31459:intron | 35.0% |
| !! | GATTGTTTTATGGAGCTTCT+GGG | - | chr2.4:10192096-10192115 | MS.gene31459:intron | 35.0% |
| !! | TCTTGTTAACTTGTGTCCTT+AGG | - | chr2.4:10193861-10193880 | MS.gene31459:intron | 35.0% |
| !! | TGAGAGATTGAAAGCATTTG+TGG | - | chr2.4:10194550-10194569 | MS.gene31459:intron | 35.0% |
| !! | TGATTGTTTTATGGAGCTTC+TGG | - | chr2.4:10192095-10192114 | MS.gene31459:intron | 35.0% |
| !! | TTTTTGTGTTCGAGTTTCAC+TGG | - | chr2.4:10193792-10193811 | MS.gene31459:intron | 35.0% |
| !!! | CATGTGTTCCCTTATTTTAG+TGG | + | chr2.4:10191160-10191179 | None:intergenic | 35.0% |
| AGAAGATGAGAGTGAGAAGA+TGG | + | chr2.4:10191847-10191866 | None:intergenic | 40.0% | |
| AGAGAAGAAAGGAAGGTGAA+AGG | - | chr2.4:10192563-10192582 | MS.gene31459:intron | 40.0% | |
| AGAGGCCATTTCAAATGAGA+GGG | + | chr2.4:10192694-10192713 | None:intergenic | 40.0% | |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2.4:10193406-10193425 | None:intergenic | 40.0% | |
| ATGCCTCACATGAAAAAGCA+TGG | + | chr2.4:10191107-10191126 | None:intergenic | 40.0% | |
| CCGCAATCTTTGTTACGATT+TGG | - | chr2.4:10194512-10194531 | MS.gene31459:intron | 40.0% | |
| CCTAAGGTGATATTGTCCAA+AGG | + | chr2.4:10191361-10191380 | None:intergenic | 40.0% | |
| CCTTTGGACAATATCACCTT+AGG | - | chr2.4:10191358-10191377 | MS.gene31459:intron | 40.0% | |
| CTGGGTTATTATAAGAGGAG+TGG | - | chr2.4:10192114-10192133 | MS.gene31459:intron | 40.0% | |
| CTTGTGGTATAGTACACTCA+AGG | + | chr2.4:10193268-10193287 | None:intergenic | 40.0% | |
| CTTTCGACTTTGGTTGAAGA+AGG | + | chr2.4:10190696-10190715 | None:intergenic | 40.0% | |
| GAGGAGCAAATATAAGCCAT+AGG | - | chr2.4:10191758-10191777 | MS.gene31459:CDS | 40.0% | |
| GGGTCCTCAATTATTTGTAG+GGG | + | chr2.4:10193193-10193212 | None:intergenic | 40.0% | |
| GGTGCAACAGTTAAACTTGA+GGG | + | chr2.4:10191047-10191066 | None:intergenic | 40.0% | |
| GTAGTGTGATTCAAAAGCCA+AGG | - | chr2.4:10192419-10192438 | MS.gene31459:intron | 40.0% | |
| GTGCAACAGTTAAACTTGAG+GGG | + | chr2.4:10191046-10191065 | None:intergenic | 40.0% | |
| GTGGTAAAGTGATTTAGGTG+TGG | + | chr2.4:10191877-10191896 | None:intergenic | 40.0% | |
| TAATTAGGGTGAGAGATGAG+AGG | - | chr2.4:10191739-10191758 | MS.gene31459:CDS | 40.0% | |
| TAGAGGCCATTTCAAATGAG+AGG | + | chr2.4:10192695-10192714 | None:intergenic | 40.0% | |
| TATGTGCCCTTAGGGAATAT+TGG | - | chr2.4:10194008-10194027 | MS.gene31459:intron | 40.0% | |
| TATTATGTCACACACACTGG+CGG | - | chr2.4:10190935-10190954 | MS.gene31459:intron | 40.0% | |
| TCAATGGTTGCACAAACCAT+TGG | + | chr2.4:10192075-10192094 | None:intergenic | 40.0% | |
| TCTCCCTAGCTATAATCCAA+AGG | - | chr2.4:10190779-10190798 | MS.gene31459:CDS | 40.0% | |
| TGGGTGTGGTAAAGTGATTT+AGG | + | chr2.4:10191882-10191901 | None:intergenic | 40.0% | |
| TGGTGCAACAGTTAAACTTG+AGG | + | chr2.4:10191048-10191067 | None:intergenic | 40.0% | |
| TTGAGGACCCTATAAATTGG+AGG | - | chr2.4:10193203-10193222 | MS.gene31459:intron | 40.0% | |
| ! | GAGAATATAGTAGGTTGAGG+GGG | + | chr2.4:10190992-10191011 | None:intergenic | 40.0% |
| ! | GAGAGGGCTTTTTAAATGAG+AGG | + | chr2.4:10192678-10192697 | None:intergenic | 40.0% |
| ! | TGCCTCACATGAAAAAGCAT+GGG | + | chr2.4:10191106-10191125 | None:intergenic | 40.0% |
| ! | TGTTGATAGATGTGTGGGTT+TGG | - | chr2.4:10193062-10193081 | MS.gene31459:intron | 40.0% |
| ! | TTTTGGTCGGACTTTTCCTT+TGG | - | chr2.4:10191342-10191361 | MS.gene31459:intron | 40.0% |
| !! | CTTTGTTGTATTGGCTAGCT+GGG | - | chr2.4:10192870-10192889 | MS.gene31459:intron | 40.0% |
| !! | TCTTTGTTGTATTGGCTAGC+TGG | - | chr2.4:10192869-10192888 | MS.gene31459:intron | 40.0% |
| !!! | AACCCATGCTTTTTCATGTG+AGG | - | chr2.4:10191101-10191120 | MS.gene31459:intron | 40.0% |
| AACAAGAAGAGATCACGTGG+TGG | - | chr2.4:10193493-10193512 | MS.gene31459:intron | 45.0% | |
| AACTGGGAGAGAAGAAAGGA+AGG | - | chr2.4:10192556-10192575 | MS.gene31459:intron | 45.0% | |
| AAGGAAGGTGAAAGGAAGAG+AGG | - | chr2.4:10192571-10192590 | MS.gene31459:intron | 45.0% | |
| ACGTAACTGGGAGAGAAGAA+AGG | - | chr2.4:10192552-10192571 | MS.gene31459:intron | 45.0% | |
| AGATGTCAATGTGTGACCAG+TGG | + | chr2.4:10192829-10192848 | None:intergenic | 45.0% | |
| AGCCGGACCTCCAATTTATA+GGG | + | chr2.4:10193213-10193232 | None:intergenic | 45.0% | |
| AGGAAGGTGAAAGGAAGAGA+GGG | - | chr2.4:10192572-10192591 | MS.gene31459:intron | 45.0% | |
| CAGGGCCGTTCCAATAAAAT+TGG | - | chr2.4:10192932-10192951 | MS.gene31459:intron | 45.0% | |
| CTGTGTTTCCACATTGCTCA+CGG | + | chr2.4:10194582-10194601 | None:intergenic | 45.0% | |
| GACCCTATAAATTGGAGGTC+CGG | - | chr2.4:10193208-10193227 | MS.gene31459:intron | 45.0% | |
| GAGACTTTGTGGTGCAAACA+TGG | + | chr2.4:10191068-10191087 | None:intergenic | 45.0% | |
| GGAAACAAGAAGAGATCACG+TGG | - | chr2.4:10193490-10193509 | MS.gene31459:intron | 45.0% | |
| GGAAACACAGCCTCAATTCT+GGG | - | chr2.4:10194592-10194611 | MS.gene31459:CDS | 45.0% | |
| TGGAAACACAGCCTCAATTC+TGG | - | chr2.4:10194591-10194610 | MS.gene31459:CDS | 45.0% | |
| ! | AAAGGGCTTTGTGCTGGAAT+AGG | - | chr2.4:10192488-10192507 | MS.gene31459:intron | 45.0% |
| ! | CATCAAAAAGGGCTTTGTGC+TGG | - | chr2.4:10192482-10192501 | MS.gene31459:intron | 45.0% |
| !! | GTTCGAGTTTCACTGGTTTC+AGG | - | chr2.4:10193799-10193818 | MS.gene31459:intron | 45.0% |
| !! | ATATATATATATATATATAG+AGG | - | chr2.4:10191697-10191716 | MS.gene31459:CDS | 5.0% |
| !! | ATATATATATATATATATAG+AGG | + | chr2.4:10191716-10191697 | None:intergenic | 5.0% |
| !! | TATATATATATATATATAGA+GGG | - | chr2.4:10191698-10191717 | MS.gene31459:CDS | 5.0% |
| !!! | ATCATTAATTATTTTTATTA+GGG | + | chr2.4:10192985-10193004 | None:intergenic | 5.0% |
| !!! | ATTTAAAATGTATATAATAA+GGG | - | chr2.4:10191215-10191234 | MS.gene31459:intron | 5.0% |
| !!! | TAATATAATTTTTTTTTTGT+CGG | + | chr2.4:10191246-10191265 | None:intergenic | 5.0% |
| !!! | TATCATTAATTATTTTTATT+AGG | + | chr2.4:10192986-10193005 | None:intergenic | 5.0% |
| AAGAAGAGATCACGTGGTGG+TGG | - | chr2.4:10193496-10193515 | MS.gene31459:intron | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2.4:10193645-10193664 | MS.gene31459:intron | 50.0% | |
| CTAGTGGAAAACGGGCACAA+CGG | + | chr2.4:10191584-10191603 | None:intergenic | 50.0% | |
| GAGCCGGACCTCCAATTTAT+AGG | + | chr2.4:10193214-10193233 | None:intergenic | 50.0% | |
| TAGTGGAAAACGGGCACAAC+GGG | + | chr2.4:10191583-10191602 | None:intergenic | 50.0% | |
| TCTTCATACCGTGCATGCTC+AGG | - | chr2.4:10193705-10193724 | MS.gene31459:intron | 50.0% | |
| !! | TAGAGGGGGTATCAAGTGAG+AGG | - | chr2.4:10191714-10191733 | MS.gene31459:CDS | 50.0% |
| GGAAGGATCCGTGAGCAATG+TGG | - | chr2.4:10194571-10194590 | MS.gene31459:CDS | 55.0% | |
| GTACACTCAAGGCCGTTCCT+TGG | + | chr2.4:10193257-10193276 | None:intergenic | 55.0% | |
| TCCTTGCGCTTGCCAAGGAA+CGG | - | chr2.4:10193242-10193261 | MS.gene31459:intron | 55.0% | |
| AGAGCTCCTTGCGCTTGCCA+AGG | - | chr2.4:10193237-10193256 | MS.gene31459:intron | 60.0% | |
| CGGAGCTACATGTGTGCCAG+GGG | - | chr2.4:10190955-10190974 | MS.gene31459:intron | 60.0% | |
| GCGGAGCTACATGTGTGCCA+GGG | - | chr2.4:10190954-10190973 | MS.gene31459:intron | 60.0% | |
| GGAGCTACATGTGTGCCAGG+GGG | - | chr2.4:10190956-10190975 | MS.gene31459:intron | 60.0% | |
| GGCAAGCGCAAGGAGCTCTA+CGG | + | chr2.4:10193236-10193255 | None:intergenic | 60.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | - | chr2.4:10193514-10193533 | MS.gene31459:intron | 60.0% | |
| CGCAAGGAGCTCTACGGAGC+CGG | + | chr2.4:10193230-10193249 | None:intergenic | 65.0% | |
| GCCGTTCCTTGGCAAGCGCA+AGG | + | chr2.4:10193246-10193265 | None:intergenic | 65.0% | |
| GGCGGAGCTACATGTGTGCC+AGG | - | chr2.4:10190953-10190972 | MS.gene31459:intron | 65.0% | |
| GTGTGACCAGTGGCGTTGCC+AGG | + | chr2.4:10192819-10192838 | None:intergenic | 65.0% | |
| GTTGCCAGGACCCTGGCTCA+GGG | + | chr2.4:10192805-10192824 | None:intergenic | 65.0% | |
| TTGCCAGGACCCTGGCTCAG+GGG | + | chr2.4:10192804-10192823 | None:intergenic | 65.0% | |
| AGTGCGAACCCCCCTGAGCC+AGG | - | chr2.4:10192791-10192810 | MS.gene31459:intron | 70.0% | |
| CAGGGTCCTGGCAACGCCAC+TGG | - | chr2.4:10192810-10192829 | MS.gene31459:intron | 70.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | + | chr2.4:10192812-10192831 | None:intergenic | 70.0% | |
| CGTTGCCAGGACCCTGGCTC+AGG | + | chr2.4:10192806-10192825 | None:intergenic | 70.0% | |
| GGGGGTTCAGCTGAACCCCC+TGG | + | chr2.4:10190993-10190974 | None:intergenic | 70.0% | |
| GTGCGAACCCCCCTGAGCCA+GGG | - | chr2.4:10192792-10192811 | MS.gene31459:intron | 70.0% | |
| TGCCAGGACCCTGGCTCAGG+GGG | + | chr2.4:10192803-10192822 | None:intergenic | 70.0% | |
| ACCCCCCTGAGCCAGGGTCC+TGG | - | chr2.4:10192798-10192817 | MS.gene31459:intron | 75.0% | |
| GCCAGGACCCTGGCTCAGGG+GGG | + | chr2.4:10192802-10192821 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 10190666 | 10194685 | 10190666 | ID=MS.gene31459 |
| chr2.4 | mRNA | 10190666 | 10194685 | 10190666 | ID=MS.gene31459.t1;Parent=MS.gene31459 |
| chr2.4 | exon | 10194551 | 10194685 | 10194551 | ID=MS.gene31459.t1.exon1;Parent=MS.gene31459.t1 |
| chr2.4 | CDS | 10194551 | 10194685 | 10194551 | ID=cds.MS.gene31459.t1;Parent=MS.gene31459.t1 |
| chr2.4 | exon | 10191625 | 10191966 | 10191625 | ID=MS.gene31459.t1.exon2;Parent=MS.gene31459.t1 |
| chr2.4 | CDS | 10191625 | 10191966 | 10191625 | ID=cds.MS.gene31459.t1;Parent=MS.gene31459.t1 |
| chr2.4 | exon | 10190666 | 10190842 | 10190666 | ID=MS.gene31459.t1.exon3;Parent=MS.gene31459.t1 |
| chr2.4 | CDS | 10190666 | 10190842 | 10190666 | ID=cds.MS.gene31459.t1;Parent=MS.gene31459.t1 |
| Gene Sequence |
| Protein sequence |
