AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31583

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31583.t1 MTR_0558s0020 87.500 296 36 1 1 295 1 296 0.0 546
MS.gene31583.t1 MTR_1g083640 83.099 284 32 1 1 268 1 284 1.70e-174 493
MS.gene31583.t1 MTR_8g446020 73.898 295 38 1 1 295 1 256 1.14e-154 441
MS.gene31583.t1 MTR_2g014100 83.265 245 32 1 1 236 1 245 7.33e-147 421
MS.gene31583.t1 MTR_6g090505 83.122 237 40 0 65 301 1 237 7.97e-144 418
MS.gene31583.t1 MTR_6g090505 66.667 102 7 2 396 495 230 306 2.45e-33 130
MS.gene31583.t1 MTR_0337s0040 72.308 260 32 2 1 259 1 221 1.77e-126 369
MS.gene31583.t1 MTR_3g008240 84.729 203 30 1 1 202 1 203 6.75e-121 353
MS.gene31583.t1 MTR_4g040430 83.663 202 29 1 1 202 1 198 7.61e-120 350
MS.gene31583.t1 MTR_5g071590 73.889 180 34 2 1 167 1 180 8.13e-92 278
MS.gene31583.t1 MTR_1g055240 88.028 142 17 0 91 232 3 144 3.13e-88 268
MS.gene31583.t1 MTR_0019s0290 82.237 152 27 0 82 233 9 160 1.64e-87 266
MS.gene31583.t1 MTR_1281s0010 80.734 109 21 0 19 127 1 109 5.16e-58 188
MS.gene31583.t1 MTR_6g051425 32.075 318 185 6 40 341 22 324 3.83e-40 148
MS.gene31583.t1 MTR_0337s0060 90.909 66 6 0 447 512 21 86 6.38e-34 129
MS.gene31583.t1 MTR_4g008820 71.717 99 27 1 1 98 125 223 4.17e-33 134
MS.gene31583.t1 MTR_8g046060 78.409 88 10 2 1 79 91 178 1.60e-32 124
MS.gene31583.t1 MTR_1g070355 26.994 326 213 8 41 362 80 384 2.04e-19 92.0
MS.gene31583.t1 MTR_0402s0040 25.405 185 119 4 49 233 40 205 5.19e-15 77.8
MS.gene31583.t1 MTR_4g035820 22.759 290 191 7 17 299 61 324 1.69e-14 76.6
MS.gene31583.t1 MTR_0337s0050 75.000 36 9 0 259 294 14 49 1.40e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31583.t1 AT4G38180 28.511 470 313 6 32 499 70 518 6.67e-62 217
MS.gene31583.t1 AT3G06250 26.069 491 286 11 34 521 189 605 6.74e-42 160
MS.gene31583.t1 AT3G06250 26.069 491 286 11 34 521 189 605 6.74e-42 160
MS.gene31583.t1 AT3G06250 26.069 491 286 11 34 521 189 605 6.74e-42 160
MS.gene31583.t1 AT1G76320 26.711 453 290 11 50 496 12 428 1.84e-41 158
MS.gene31583.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.89e-41 159
MS.gene31583.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.89e-41 159
MS.gene31583.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.89e-41 159
MS.gene31583.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.89e-41 159
MS.gene31583.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.89e-41 159
MS.gene31583.t1 AT1G76320 26.711 453 290 11 50 496 12 428 5.96e-41 157
MS.gene31583.t1 AT1G76320 26.711 453 290 11 50 496 12 428 5.96e-41 157
MS.gene31583.t1 AT1G76320 26.711 453 290 11 50 496 12 428 6.18e-41 157
MS.gene31583.t1 AT4G38170 28.986 276 185 4 235 507 24 291 6.00e-39 149
MS.gene31583.t1 AT1G10240 26.695 472 293 16 49 497 62 503 2.40e-37 146
MS.gene31583.t1 AT1G10240 26.695 472 293 16 49 497 62 503 2.40e-37 146
MS.gene31583.t1 AT2G27110 26.790 377 251 7 127 499 108 463 3.33e-37 147
MS.gene31583.t1 AT2G27110 26.790 377 251 7 127 499 108 463 3.33e-37 147
MS.gene31583.t1 AT5G18960 25.050 503 299 13 24 521 200 629 4.08e-37 146
MS.gene31583.t1 AT5G18960 25.050 503 299 13 24 521 200 629 4.08e-37 146
MS.gene31583.t1 AT2G27110 29.066 289 197 3 213 499 36 318 1.18e-36 144
MS.gene31583.t1 AT5G28530 26.077 441 282 12 40 462 60 474 2.00e-36 144
MS.gene31583.t1 AT5G28530 26.077 441 282 12 40 462 60 474 2.32e-36 144
MS.gene31583.t1 AT5G28530 26.077 441 282 12 40 462 60 474 2.32e-36 144
MS.gene31583.t1 AT3G22170 22.547 479 330 9 34 507 69 511 8.13e-34 136
MS.gene31583.t1 AT3G22170 22.547 479 330 9 34 507 69 511 8.13e-34 136
MS.gene31583.t1 AT2G32250 24.453 503 300 14 1 496 8 437 2.05e-32 132
MS.gene31583.t1 AT2G32250 24.453 503 300 14 1 496 8 437 2.87e-32 132
MS.gene31583.t1 AT2G32250 24.453 503 300 14 1 496 8 437 2.87e-32 132
MS.gene31583.t1 AT2G32250 24.453 503 300 14 1 496 8 437 2.87e-32 132
MS.gene31583.t1 AT2G32250 24.453 503 300 14 1 496 8 437 3.11e-32 132
MS.gene31583.t1 AT2G32250 24.453 503 300 14 1 496 8 437 3.11e-32 132
MS.gene31583.t1 AT2G32250 24.890 454 265 12 50 496 12 396 7.23e-32 130
MS.gene31583.t1 AT2G32250 24.890 454 265 12 50 496 12 396 8.10e-32 130
MS.gene31583.t1 AT1G80010 25.764 458 279 15 41 472 101 523 3.82e-31 128
MS.gene31583.t1 AT1G52520 23.222 478 324 12 41 512 91 531 5.49e-28 119
MS.gene31583.t1 AT4G19990 23.620 453 283 11 41 483 27 426 1.45e-27 117
MS.gene31583.t1 AT4G19990 23.620 453 283 11 41 483 41 440 1.51e-27 117
MS.gene31583.t1 AT4G19990 23.620 453 283 11 41 483 27 426 1.77e-27 117
MS.gene31583.t1 AT4G19990 23.620 453 283 11 41 483 27 426 1.77e-27 117
MS.gene31583.t1 AT4G19990 28.358 268 185 4 219 483 106 369 1.79e-27 117
MS.gene31583.t1 AT4G19990 28.358 268 185 4 219 483 163 426 2.50e-27 117
MS.gene31583.t1 AT4G19990 28.358 268 185 4 219 483 163 426 2.50e-27 117

Find 73 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGATGAGTTAACTAATT+TGG 0.156761 2.4:+7548658 MS.gene31583:CDS
CTTTAGTCATTTCAACATTA+TGG 0.194287 2.4:+7548925 MS.gene31583:CDS
TACATTTCAGCTGCCTTTCT+TGG 0.197151 2.4:+7548377 MS.gene31583:intron
CAACAAGATTATGCTCTATT+TGG 0.198611 2.4:+7547866 MS.gene31583:CDS
CATCGTAAGAGTGTGTTATT+TGG 0.276792 2.4:+7548410 MS.gene31583:CDS
TATGGTTTGAGGTTTCTTAT+TGG 0.280533 2.4:-7548504 None:intergenic
AATCAGATTTCGACTACAAT+TGG 0.318540 2.4:+7548699 MS.gene31583:CDS
GCCGATATTTATTGTTTGTT+CGG 0.341758 2.4:-7547916 None:intergenic
GAGGGATAATCATGCTGATT+TGG 0.346844 2.4:+7548958 MS.gene31583:CDS
ACCAGCCTGGTCTGTGTATA+TGG 0.370092 2.4:-7548522 None:intergenic
GTATGCATTGGTATTCAGTT+TGG 0.378183 2.4:+7548798 MS.gene31583:CDS
AACAATAAATATCGGCCATT+AGG 0.388497 2.4:+7547923 MS.gene31583:CDS
TCATGCTGATTTGGACTTCA+AGG 0.389304 2.4:+7548967 MS.gene31583:CDS
ACCGAACAAACAATAAATAT+CGG 0.389395 2.4:+7547915 MS.gene31583:CDS
TTCTCATACTCAACAAGAAC+TGG 0.395633 2.4:-7547386 None:intergenic
TATGCATTGGTATTCAGTTT+GGG 0.402886 2.4:+7548799 MS.gene31583:CDS
CCATGATTCTTTATCACTAA+AGG 0.406174 2.4:-7547147 None:intergenic
TAAAGAATCATGGAAGTCTT+TGG 0.408500 2.4:+7547157 MS.gene31583:CDS
ATAACACTGGATTCTCTGTT+AGG 0.417808 2.4:+7547228 MS.gene31583:CDS
CGAGAAGTAAATGAAGTTCA+AGG 0.430014 2.4:+7547563 MS.gene31583:CDS
AGCTGGAATATATTTGAAGT+TGG 0.433136 2.4:+7547445 MS.gene31583:CDS
TGAATGTCTATAAGATATAT+AGG 0.445219 2.4:+7547477 MS.gene31583:CDS
TGGTCTGTGTATATGGTTTG+AGG 0.447350 2.4:-7548515 None:intergenic
GAAAGGGTTGGTTGTAAAGC+TGG 0.447509 2.4:+7547428 MS.gene31583:CDS
CGTTATGCTTGTAACAAAGA+AGG 0.449439 2.4:+7547311 MS.gene31583:CDS
GCTTTAATAAATTCTAAAGC+TGG 0.450264 2.4:+7547593 MS.gene31583:CDS
ATCTGAGAGTGGACAATTGA+CGG 0.452529 2.4:+7547082 MS.gene31583:CDS
TGGTCTTTGCTCATGGCACA+TGG 0.452802 2.4:+7548589 MS.gene31583:CDS
CTCAAGTAGCGCAAATGCTC+TGG 0.460440 2.4:-7547533 None:intergenic
GGCCTACTTCAGACTTTAAG+TGG 0.462107 2.4:+7548753 MS.gene31583:CDS
ACAAAATAAGAAATCGGATA+AGG 0.469178 2.4:+7547277 MS.gene31583:CDS
GAAGTGATGGGTCAAGGAGT+TGG 0.484292 2.4:+7547638 MS.gene31583:CDS
TTACAACCAACCCTTTCCTC+TGG 0.485330 2.4:-7547422 None:intergenic
TTTAATTATGCATATAACAC+TGG 0.485542 2.4:+7547215 MS.gene31583:CDS
TCTAATGACAACTCGTCAAA+AGG 0.488137 2.4:+7547706 MS.gene31583:CDS
CAATTCACAAAATAAGAAAT+CGG 0.490263 2.4:+7547271 MS.gene31583:CDS
ATGATTGTCAAAACCAAGAA+AGG 0.491378 2.4:-7548390 None:intergenic
ATCAGATTTCGACTACAATT+GGG 0.491708 2.4:+7548700 MS.gene31583:CDS
CGTCAAAAGGAGATGGTGGC+TGG 0.492100 2.4:+7547719 MS.gene31583:CDS
ACATTATGGTTCAGAGAATG+AGG 0.494022 2.4:+7548939 MS.gene31583:CDS
GACCGCATAAGCTGACTGTT+GGG 0.496307 2.4:-7549019 None:intergenic
GAGAACATCTTATGAAGTGA+TGG 0.499875 2.4:+7547625 MS.gene31583:CDS
TGTCTTCTGCAGCATCAACT+TGG 0.502977 2.4:-7547811 None:intergenic
CTCATTCAAATCGTATGCAT+TGG 0.504483 2.4:+7548786 MS.gene31583:CDS
TTTAAGTCCGAAAATCGAAA+AGG 0.508080 2.4:-7547677 None:intergenic
TAAAGAATCGAACAAGTGAA+TGG 0.522101 2.4:-7548907 None:intergenic
TGTCTATAAGATATATAGGT+GGG 0.523740 2.4:+7547481 MS.gene31583:CDS
TAACAAAGAAGGTTTCAAGA+AGG 0.538422 2.4:+7547322 MS.gene31583:CDS
CCTTTAGTGATAAAGAATCA+TGG 0.543522 2.4:+7547147 MS.gene31583:CDS
AACAAAGAAGGTTTCAAGAA+GGG 0.545537 2.4:+7547323 MS.gene31583:CDS
AAATGCTCTGGTTTATGTAA+TGG 0.552634 2.4:-7547521 None:intergenic
ATTGGTATTCAGTTTGGGTG+AGG 0.553510 2.4:+7548804 MS.gene31583:CDS
ACTTCAACAATGCACCAGCC+TGG 0.557072 2.4:-7548535 None:intergenic
AATGAAGCTCTCTCGAAACC+AGG 0.557236 2.4:+7547773 MS.gene31583:CDS
TGAAAATTCAGTTATTGATG+CGG 0.565546 2.4:+7547106 MS.gene31583:CDS
GTGATGGGTCAAGGAGTTGG+AGG 0.568802 2.4:+7547641 MS.gene31583:CDS
AATCGAACAAGTGAATGGTA+TGG 0.575778 2.4:-7548902 None:intergenic
GGACCGCATAAGCTGACTGT+TGG 0.579264 2.4:-7549020 None:intergenic
TCTTATGAAGTGATGGGTCA+AGG 0.589029 2.4:+7547632 MS.gene31583:CDS
ACCATATACACAGACCAGGC+TGG 0.590176 2.4:+7548521 MS.gene31583:CDS
GACAACTCGTCAAAAGGAGA+TGG 0.599038 2.4:+7547712 MS.gene31583:CDS
AGAACATCTTATGAAGTGAT+GGG 0.601988 2.4:+7547626 MS.gene31583:CDS
AACTCGTCAAAAGGAGATGG+TGG 0.603142 2.4:+7547715 MS.gene31583:CDS
ATCCCAACAGTCAGCTTATG+CGG 0.606153 2.4:+7549017 MS.gene31583:CDS
ATATCAACTTCATCTGAGAG+TGG 0.614980 2.4:+7547071 MS.gene31583:CDS
AGCCACTTAAAGTCTGAAGT+AGG 0.617789 2.4:-7548755 None:intergenic
AGAACTGGACTGTCACATGT+TGG 0.620791 2.4:-7547371 None:intergenic
GGGTCAAGGAGTTGGAGGCA+CGG 0.621882 2.4:+7547646 MS.gene31583:CDS
GGTCTTTGCTCATGGCACAT+GGG 0.639768 2.4:+7548590 MS.gene31583:CDS
CATTATGGTTCAGAGAATGA+GGG 0.643278 2.4:+7548940 MS.gene31583:CDS
ATGTCTATAAGATATATAGG+TGG 0.643489 2.4:+7547480 MS.gene31583:CDS
GATTTCAGCTTATCGACAGA+CGG 0.644926 2.4:-7549490 None:intergenic
TCAAACCATATACACAGACC+AGG 0.671057 2.4:+7548517 MS.gene31583:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTCACAAAATAAGAAAT+CGG + chr2.4:7547271-7547290 MS.gene31583:CDS 20.0%
!! TGAATGTCTATAAGATATAT+AGG + chr2.4:7547477-7547496 MS.gene31583:CDS 20.0%
!! TTTAATTATGCATATAACAC+TGG + chr2.4:7547215-7547234 MS.gene31583:CDS 20.0%
!!! AATTTAATGTTCTGGTTTAT+TGG + chr2.4:7548098-7548117 MS.gene31583:intron 20.0%
!!! ATGATGAAAAACTGTTTTAA+TGG + chr2.4:7548728-7548747 MS.gene31583:CDS 20.0%
!!! TGAATGTTTATATTGATTGA+AGG + chr2.4:7548070-7548089 MS.gene31583:intron 20.0%
! ACAAAATAAGAAATCGGATA+AGG + chr2.4:7547277-7547296 MS.gene31583:CDS 25.0%
! ACCGAACAAACAATAAATAT+CGG + chr2.4:7547915-7547934 MS.gene31583:CDS 25.0%
! AGTACAAAATACTAACCTAA+TGG - chr2.4:7547941-7547960 None:intergenic 25.0%
! ATGGTATATGTGTGTTAATT+TGG + chr2.4:7548027-7548046 MS.gene31583:intron 25.0%
! ATGTCTATAAGATATATAGG+TGG + chr2.4:7547480-7547499 MS.gene31583:CDS 25.0%
! CATAATAGTATTTGAAGGAA+AGG - chr2.4:7549099-7549118 None:intergenic 25.0%
! CTTTAGTCATTTCAACATTA+TGG + chr2.4:7548925-7548944 MS.gene31583:CDS 25.0%
! TGAAAATTCAGTTATTGATG+CGG + chr2.4:7547106-7547125 MS.gene31583:CDS 25.0%
! TGAAATTTGAATGAATGTTC+TGG + chr2.4:7547988-7548007 MS.gene31583:intron 25.0%
! TGAATAAATGAAAAGCAAGA+TGG - chr2.4:7549064-7549083 None:intergenic 25.0%
! TGTCTATAAGATATATAGGT+GGG + chr2.4:7547481-7547500 MS.gene31583:CDS 25.0%
! TTCCTTCAAATACTATTATG+AGG + chr2.4:7549099-7549118 MS.gene31583:intron 25.0%
! TTTCGATGAGTTAACTAATT+TGG + chr2.4:7548658-7548677 MS.gene31583:CDS 25.0%
!! AGGTTTAGAATTTAATGTTC+TGG + chr2.4:7548090-7548109 MS.gene31583:intron 25.0%
!! TGTTGTATTTTGTTCTGATT+TGG + chr2.4:7548348-7548367 MS.gene31583:intron 25.0%
!!! AAGACATAGCTAGTATTTTT+TGG + chr2.4:7547828-7547847 MS.gene31583:CDS 25.0%
!!! AGACATAGCTAGTATTTTTT+GGG + chr2.4:7547829-7547848 MS.gene31583:CDS 25.0%
!!! ATGTTGATAATGATAATGAG+AGG + chr2.4:7549200-7549219 MS.gene31583:intron 25.0%
!!! CTTATTTTGTGAATTGTTCT+TGG - chr2.4:7547267-7547286 None:intergenic 25.0%
!!! GCTTTAATAAATTCTAAAGC+TGG + chr2.4:7547593-7547612 MS.gene31583:CDS 25.0%
!!! TGAAAAACTGTTTTAATGGA+AGG + chr2.4:7548732-7548751 MS.gene31583:CDS 25.0%
!!! TGTTGATAATGATAATGAGA+GGG + chr2.4:7549201-7549220 MS.gene31583:intron 25.0%
AAAAACACATGATCTTTCCA+TGG - chr2.4:7548161-7548180 None:intergenic 30.0%
AACAAAGAAGGTTTCAAGAA+GGG + chr2.4:7547323-7547342 MS.gene31583:CDS 30.0%
AACAATAAATATCGGCCATT+AGG + chr2.4:7547923-7547942 MS.gene31583:CDS 30.0%
AATCAGATTTCGACTACAAT+TGG + chr2.4:7548699-7548718 MS.gene31583:CDS 30.0%
AGAACATCTTATGAAGTGAT+GGG + chr2.4:7547626-7547645 MS.gene31583:CDS 30.0%
ATCAGATTTCGACTACAATT+GGG + chr2.4:7548700-7548719 MS.gene31583:CDS 30.0%
ATGATTGTCAAAACCAAGAA+AGG - chr2.4:7548393-7548412 None:intergenic 30.0%
ATTATGATCTTCAAACCTTG+GGG - chr2.4:7549272-7549291 None:intergenic 30.0%
CAACAAGATTATGCTCTATT+TGG + chr2.4:7547866-7547885 MS.gene31583:CDS 30.0%
CCATGATTCTTTATCACTAA+AGG - chr2.4:7547150-7547169 None:intergenic 30.0%
CCTTTAGTGATAAAGAATCA+TGG + chr2.4:7547147-7547166 MS.gene31583:CDS 30.0%
CTCCTCATAATAGTATTTGA+AGG - chr2.4:7549104-7549123 None:intergenic 30.0%
CTTCAAATACTATTATGAGG+AGG + chr2.4:7549102-7549121 MS.gene31583:intron 30.0%
GAGAATGCAAAGAAAAATCT+TGG + chr2.4:7548614-7548633 MS.gene31583:CDS 30.0%
GATTATGATCTTCAAACCTT+GGG - chr2.4:7549273-7549292 None:intergenic 30.0%
GCCGATATTTATTGTTTGTT+CGG - chr2.4:7547919-7547938 None:intergenic 30.0%
TAAAGAAAAACCAGAGGAAA+GGG + chr2.4:7547412-7547431 MS.gene31583:CDS 30.0%
TAAAGAATCATGGAAGTCTT+TGG + chr2.4:7547157-7547176 MS.gene31583:CDS 30.0%
TAAAGAATCGAACAAGTGAA+TGG - chr2.4:7548910-7548929 None:intergenic 30.0%
TAACAAAGAAGGTTTCAAGA+AGG + chr2.4:7547322-7547341 MS.gene31583:CDS 30.0%
TGGATATCATAGTAAAAACC+TGG - chr2.4:7547794-7547813 None:intergenic 30.0%
TGGTGTATACTTGTTTACTA+CGG - chr2.4:7549044-7549063 None:intergenic 30.0%
TTTAAGTCCGAAAATCGAAA+AGG - chr2.4:7547680-7547699 None:intergenic 30.0%
TTTCTATTTACACAGCACAA+TGG + chr2.4:7548307-7548326 MS.gene31583:intron 30.0%
! AAATGCTCTGGTTTATGTAA+TGG - chr2.4:7547524-7547543 None:intergenic 30.0%
! AGCTGGAATATATTTGAAGT+TGG + chr2.4:7547445-7547464 MS.gene31583:CDS 30.0%
! CAAAGTTTTCACAATTGAGA+AGG + chr2.4:7549159-7549178 MS.gene31583:intron 30.0%
! GAATCTTCCTTTTCGATTTT+CGG + chr2.4:7547670-7547689 MS.gene31583:CDS 30.0%
! GGTTTCAAATGTTGATGTTT+TGG + chr2.4:7549222-7549241 MS.gene31583:intron 30.0%
! TATGCATTGGTATTCAGTTT+GGG + chr2.4:7548799-7548818 MS.gene31583:CDS 30.0%
! TATGGTTTGAGGTTTCTTAT+TGG - chr2.4:7548507-7548526 None:intergenic 30.0%
! TCAATCACGAATGTTTTTCA+AGG + chr2.4:7548557-7548576 MS.gene31583:CDS 30.0%
! TGGTTTAGAATTGAAGGTTA+TGG + chr2.4:7548008-7548027 MS.gene31583:intron 30.0%
!! ATCATAATCGACTTGATGAA+AGG + chr2.4:7549284-7549303 MS.gene31583:intron 30.0%
!! ATGTTCTGGTTTAGAATTGA+AGG + chr2.4:7548002-7548021 MS.gene31583:intron 30.0%
!! TCATAATCGACTTGATGAAA+GGG + chr2.4:7549285-7549304 MS.gene31583:intron 30.0%
!! TCGACATGTTTTCAAGATTT+TGG + chr2.4:7549381-7549400 MS.gene31583:intron 30.0%
!!! CTGCACAATATGTTTTAAAG+CGG + chr2.4:7549449-7549468 MS.gene31583:intron 30.0%
!!! GTTTTTCAAGGTGTTTTTCA+TGG + chr2.4:7548569-7548588 MS.gene31583:CDS 30.0%
!!! TTCAAGATTTTGGAGTTCTT+AGG + chr2.4:7549391-7549410 MS.gene31583:intron 30.0%
AATCGAACAAGTGAATGGTA+TGG - chr2.4:7548905-7548924 None:intergenic 35.0%
ACATTATGGTTCAGAGAATG+AGG + chr2.4:7548939-7548958 MS.gene31583:CDS 35.0%
ATAACACTGGATTCTCTGTT+AGG + chr2.4:7547228-7547247 MS.gene31583:CDS 35.0%
ATATCAACTTCATCTGAGAG+TGG + chr2.4:7547071-7547090 MS.gene31583:CDS 35.0%
CATTATGGTTCAGAGAATGA+GGG + chr2.4:7548940-7548959 MS.gene31583:CDS 35.0%
CGAGAAGTAAATGAAGTTCA+AGG + chr2.4:7547563-7547582 MS.gene31583:CDS 35.0%
CGATTATGATCTTCAAACCT+TGG - chr2.4:7549274-7549293 None:intergenic 35.0%
CGTTATGCTTGTAACAAAGA+AGG + chr2.4:7547311-7547330 MS.gene31583:CDS 35.0%
CTAAAGAAAAACCAGAGGAA+AGG + chr2.4:7547411-7547430 MS.gene31583:CDS 35.0%
CTCATTCAAATCGTATGCAT+TGG + chr2.4:7548786-7548805 MS.gene31583:CDS 35.0%
GAAAGCTAAAGAAAAACCAG+AGG + chr2.4:7547406-7547425 MS.gene31583:CDS 35.0%
GAGAACATCTTATGAAGTGA+TGG + chr2.4:7547625-7547644 MS.gene31583:CDS 35.0%
GTCTGCTTAATCCTAAAAAC+AGG + chr2.4:7547348-7547367 MS.gene31583:CDS 35.0%
TCTAATGACAACTCGTCAAA+AGG + chr2.4:7547706-7547725 MS.gene31583:CDS 35.0%
TGTTCAGAGCACAAATTCTA+AGG - chr2.4:7548137-7548156 None:intergenic 35.0%
TTCTCATACTCAACAAGAAC+TGG - chr2.4:7547389-7547408 None:intergenic 35.0%
! CATCGTAAGAGTGTGTTATT+TGG + chr2.4:7548410-7548429 MS.gene31583:CDS 35.0%
! GTATGCATTGGTATTCAGTT+TGG + chr2.4:7548798-7548817 MS.gene31583:CDS 35.0%
! TCTTTCAATGCTTTTCTTCG+TGG + chr2.4:7548869-7548888 MS.gene31583:CDS 35.0%
! TTTTTCATGGTCTTTGCTCA+TGG + chr2.4:7548582-7548601 MS.gene31583:CDS 35.0%
!! CACAAATTCTAAGGCAAGAT+AGG - chr2.4:7548128-7548147 None:intergenic 35.0%
!! CGCTTTAAAACATATTGTGC+AGG - chr2.4:7549451-7549470 None:intergenic 35.0%
!!! AAGATTTTGGAGTTCTTAGG+TGG + chr2.4:7549394-7549413 MS.gene31583:intron 35.0%
!!! AGACATCAGCTACTTTTGAT+TGG + chr2.4:7548453-7548472 MS.gene31583:CDS 35.0%
!!! CACAATATGTTTTAAAGCGG+TGG + chr2.4:7549452-7549471 MS.gene31583:intron 35.0%
ACCTATGATCTTTGCATAGC+TGG - chr2.4:7548257-7548276 None:intergenic 40.0%
ATCTGAGAGTGGACAATTGA+CGG + chr2.4:7547082-7547101 MS.gene31583:CDS 40.0%
ATGAGGAGGACACAACAAAA+GGG + chr2.4:7549116-7549135 MS.gene31583:intron 40.0%
ATGTCGTATGTTTGAGAACC+GGG + chr2.4:7549348-7549367 MS.gene31583:intron 40.0%
ATTGGTATTCAGTTTGGGTG+AGG + chr2.4:7548804-7548823 MS.gene31583:CDS 40.0%
CATGTCGTATGTTTGAGAAC+CGG + chr2.4:7549347-7549366 MS.gene31583:intron 40.0%
TACATTTCAGCTGCCTTTCT+TGG + chr2.4:7548377-7548396 MS.gene31583:intron 40.0%
TATGAGGAGGACACAACAAA+AGG + chr2.4:7549115-7549134 MS.gene31583:intron 40.0%
TCAAACCATATACACAGACC+AGG + chr2.4:7548517-7548536 MS.gene31583:CDS 40.0%
TCCAGCTATGCAAAGATCAT+AGG + chr2.4:7548253-7548272 MS.gene31583:intron 40.0%
TGGTCTGTGTATATGGTTTG+AGG - chr2.4:7548518-7548537 None:intergenic 40.0%
! AGCCACTTAAAGTCTGAAGT+AGG - chr2.4:7548758-7548777 None:intergenic 40.0%
! GAGGGATAATCATGCTGATT+TGG + chr2.4:7548958-7548977 MS.gene31583:CDS 40.0%
!! GTTTTGGATGCAGAACTTGA+AGG + chr2.4:7549238-7549257 MS.gene31583:intron 40.0%
!! TCACATGTTGGCCTGTTTTT+AGG - chr2.4:7547362-7547381 None:intergenic 40.0%
!! TCATGCTGATTTGGACTTCA+AGG + chr2.4:7548967-7548986 MS.gene31583:CDS 40.0%
!! TCTTATGAAGTGATGGGTCA+AGG + chr2.4:7547632-7547651 MS.gene31583:CDS 40.0%
!!! GCTAGTATTTTTTGGGCAGA+TGG + chr2.4:7547836-7547855 MS.gene31583:CDS 40.0%
AACTCGTCAAAAGGAGATGG+TGG + chr2.4:7547715-7547734 MS.gene31583:CDS 45.0%
AATGAAGCTCTCTCGAAACC+AGG + chr2.4:7547773-7547792 MS.gene31583:CDS 45.0%
AGAACTGGACTGTCACATGT+TGG - chr2.4:7547374-7547393 None:intergenic 45.0%
ATCCCAACAGTCAGCTTATG+CGG + chr2.4:7549017-7549036 MS.gene31583:CDS 45.0%
CATGTCGACATAAGAAACCC+CGG - chr2.4:7549369-7549388 None:intergenic 45.0%
GAAAAACCAGAGGAAAGGGT+TGG + chr2.4:7547416-7547435 MS.gene31583:CDS 45.0%
GACAACTCGTCAAAAGGAGA+TGG + chr2.4:7547712-7547731 MS.gene31583:CDS 45.0%
GATCTTCAAACCTTGGGGAA+AGG - chr2.4:7549267-7549286 None:intergenic 45.0%
GGCCTACTTCAGACTTTAAG+TGG + chr2.4:7548753-7548772 MS.gene31583:CDS 45.0%
TGTCGTATGTTTGAGAACCG+GGG + chr2.4:7549349-7549368 MS.gene31583:intron 45.0%
TGTCTTCTGCAGCATCAACT+TGG - chr2.4:7547814-7547833 None:intergenic 45.0%
TTACAACCAACCCTTTCCTC+TGG - chr2.4:7547425-7547444 None:intergenic 45.0%
TTGAAGGAAACCTTTCCCCA+AGG + chr2.4:7549254-7549273 MS.gene31583:intron 45.0%
! ATTTGTGCTCTGAACAGCCA+TGG + chr2.4:7548141-7548160 MS.gene31583:intron 45.0%
! GTGAGGTCACATTTTACAGC+TGG + chr2.4:7548821-7548840 MS.gene31583:CDS 45.0%
!! GAAAGGGTTGGTTGTAAAGC+TGG + chr2.4:7547428-7547447 MS.gene31583:CDS 45.0%
ACCAGCCTGGTCTGTGTATA+TGG - chr2.4:7548525-7548544 None:intergenic 50.0%
ACCATATACACAGACCAGGC+TGG + chr2.4:7548521-7548540 MS.gene31583:CDS 50.0%
ACTTCAACAATGCACCAGCC+TGG - chr2.4:7548538-7548557 None:intergenic 50.0%
CTCAAGTAGCGCAAATGCTC+TGG - chr2.4:7547536-7547555 None:intergenic 50.0%
GACCGCATAAGCTGACTGTT+GGG - chr2.4:7549022-7549041 None:intergenic 50.0%
GGGTTGTCACAGTCGACATT+AGG + chr2.4:7549305-7549324 MS.gene31583:intron 50.0%
GGTCTTTGCTCATGGCACAT+GGG + chr2.4:7548590-7548609 MS.gene31583:CDS 50.0%
TGGTCTTTGCTCATGGCACA+TGG + chr2.4:7548589-7548608 MS.gene31583:CDS 50.0%
!! GAAGTGATGGGTCAAGGAGT+TGG + chr2.4:7547638-7547657 MS.gene31583:CDS 50.0%
GGACCGCATAAGCTGACTGT+TGG - chr2.4:7549023-7549042 None:intergenic 55.0%
! CGTCAAAAGGAGATGGTGGC+TGG + chr2.4:7547719-7547738 MS.gene31583:CDS 55.0%
!! GTGATGGGTCAAGGAGTTGG+AGG + chr2.4:7547641-7547660 MS.gene31583:CDS 55.0%
GGGTCAAGGAGTTGGAGGCA+CGG + chr2.4:7547646-7547665 MS.gene31583:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 7547062 7549508 7547062 ID=MS.gene31583
chr2.4 mRNA 7547062 7549508 7547062 ID=MS.gene31583.t1;Parent=MS.gene31583
chr2.4 exon 7547062 7547944 7547062 ID=MS.gene31583.t1.exon1;Parent=MS.gene31583.t1
chr2.4 CDS 7547062 7547944 7547062 ID=cds.MS.gene31583.t1;Parent=MS.gene31583.t1
chr2.4 exon 7548387 7549038 7548387 ID=MS.gene31583.t1.exon2;Parent=MS.gene31583.t1
chr2.4 CDS 7548387 7549038 7548387 ID=cds.MS.gene31583.t1;Parent=MS.gene31583.t1
chr2.4 exon 7549469 7549508 7549469 ID=MS.gene31583.t1.exon3;Parent=MS.gene31583.t1
chr2.4 CDS 7549469 7549508 7549469 ID=cds.MS.gene31583.t1;Parent=MS.gene31583.t1
Gene Sequence

>MS.gene31583

ATGGATTTGATATCAACTTCATCTGAGAGTGGACAATTGACGGTTGAAAATTCAGTTATTGATGCGGATAGTTCTCAATGTTACTCCTTTAGTGATAAAGAATCATGGAAGTCTTTGGTCTTTAAATCTATAAAAGAGATTGAAGATTTTTATTTTAATTATGCATATAACACTGGATTCTCTGTTAGGAGTATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGGATAAGGTACATTATGTGCGTTATGCTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAGGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGCGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGTGATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTAAGAAATGAAGCTCTCTCGAAACCAGGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGGTTAGTATTTTGTACTTCTCACAGTTTTTAATTCTTATATTCTTGAAATTTGAATGAATGTTCTGGTTTAGAATTGAAGGTTATGGTATATGTGTGTTAATTTGGCTCTTGTGTGTGTTTAGAATTGAATGTTTATATTGATTGAAGGTTTAGAATTTAATGTTCTGGTTTATTGGTGATCCTATCTTGCCTTAGAATTTGTGCTCTGAACAGCCATGGAAAGATCATGTGTTTTTTTATCGATGATAAATAAATAGCTCTTTCTGTGTTTGCGAGTTTAGACATCTCGCTTGAGAAGTTGTGCTATGTCCAGCTATGCAAAGATCATAGGTGTTTTTTTACAGTTGTTAAATTAATAGCTTTTTCTATTTACACAGCACAATGGTTTTATATTTTTTAAATATGTTGTATTTTGTTCTGATTTGGTTCATTTACATTTCAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGCTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTGGTGCATTGTTGAAGTCAATCACGAATGTTTTTCAAGGTGTTTTTCATGGTCTTTGCTCATGGCACATGGGAGAGAATGCAAAGAAAAATCTTGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCTAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCAGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTATTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCATACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGATTTGGACTTCAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCTGAATTGAACAAGTTCTTCAAAGTTTTCACAATTGAGAAGGTTGATTATAATTACGACGATGTTGATAATGATAATGAGAGGGTTTCAAATGTTGATGTTTTGGATGCAGAACTTGAAGGAAACCTTTCCCCAAGGTTTGAAGATCATAATCGACTTGATGAAAGGGTTGTCACAGTCGACATTAGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCGACATGTTTTCAAGATTTTGGAGTTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATATGTTTTAAAGCGGTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGA
Protein sequence

>MS.gene31583.t1

MDLISTSSESGQLTVENSVIDADSSQCYSFSDKESWKSLVFKSIKEIEDFYFNYAYNTGFSVRSMLKSKNNSQNKKSDKVHYVRYACNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYRWEVDHCHPLHKPEHLRYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTTRQKEMVAGEATVIQEFLRNEALSKPGFYYDIQVDAAEDIASIFWADGIMQQDYALFGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGAALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQAGALLKSITNVFQGVFHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWYSVWVRSHFTAGLKTTQLSESFNAFLRGFLQPYHSLVRFFSHFNIMVQRMRDNHADLDFKAANTRTKNNYPNSQLMRGGLEMCVRLSIS