AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31697

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31697.t1 MTR_1g006650 94.767 344 14 2 1 340 1 344 0.0 650
MS.gene31697.t1 MTR_3g109760 55.247 324 116 8 19 340 22 318 1.65e-104 309
MS.gene31697.t1 MTR_8g013950 46.884 337 131 12 23 340 35 342 5.79e-78 242
MS.gene31697.t1 MTR_8g076340 47.317 205 90 5 96 300 102 288 1.74e-46 159
MS.gene31697.t1 MTR_4g071590 34.615 312 141 10 5 299 15 280 6.74e-43 150
MS.gene31697.t1 MTR_4g471590 34.615 312 141 10 5 299 15 280 6.74e-43 150
MS.gene31697.t1 MTR_6g032830 39.732 224 101 6 107 296 35 258 6.77e-41 144
MS.gene31697.t1 MTR_5g021340 44.156 231 95 7 94 300 150 370 3.74e-39 143
MS.gene31697.t1 MTR_1g094930 35.463 313 142 11 27 294 9 306 1.46e-37 137
MS.gene31697.t1 MTR_3g117380 37.209 215 117 3 87 300 102 299 3.05e-37 136
MS.gene31697.t1 MTR_1g046680 78.873 71 15 0 229 299 171 241 9.79e-35 127
MS.gene31697.t1 MTR_7g085410 39.370 254 110 10 73 294 11 252 1.02e-34 128
MS.gene31697.t1 MTR_5g007600 74.648 71 18 0 229 299 258 328 4.68e-33 125
MS.gene31697.t1 MTR_5g007600 39.234 209 94 4 101 300 43 227 5.88e-29 114
MS.gene31697.t1 MTR_1g094930 78.462 65 14 0 230 294 147 211 1.10e-32 122
MS.gene31697.t1 MTR_1g116010 55.963 109 43 2 209 316 142 246 6.31e-32 120
MS.gene31697.t1 MTR_2g094600 76.923 65 15 0 230 294 216 280 1.75e-31 120
MS.gene31697.t1 MTR_4g058910 73.134 67 18 0 230 296 314 380 2.93e-30 119
MS.gene31697.t1 MTR_7g446110 62.903 62 23 0 230 291 187 248 3.65e-21 91.3
MS.gene31697.t1 MTR_7g445950 32.124 193 90 6 99 291 30 181 3.31e-19 84.3
MS.gene31697.t1 MTR_7g446070 33.495 206 105 8 88 291 18 193 6.44e-19 84.0
MS.gene31697.t1 MTR_7g445980 62.712 59 21 1 234 291 37 95 1.47e-18 80.1
MS.gene31697.t1 MTR_7g112330 70.588 34 10 0 232 265 24 57 2.80e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31697.t1 AT5G25830 56.981 265 97 7 93 340 67 331 6.29e-92 278
MS.gene31697.t1 AT4G32890 43.881 335 131 9 21 340 16 308 5.30e-80 246
MS.gene31697.t1 AT3G60530 48.309 207 63 6 93 298 63 226 3.63e-49 165
MS.gene31697.t1 AT2G45050 43.277 238 79 7 89 310 60 257 8.41e-49 165
MS.gene31697.t1 AT5G66320 38.519 270 116 8 69 312 86 331 3.61e-39 142
MS.gene31697.t1 AT5G66320 38.519 270 116 8 69 312 86 331 3.61e-39 142
MS.gene31697.t1 AT4G36240 37.544 285 106 9 22 297 10 231 6.03e-39 138
MS.gene31697.t1 AT4G34680 38.710 217 82 5 90 299 77 249 1.39e-36 133
MS.gene31697.t1 AT4G34680 38.710 217 82 5 90 299 77 249 1.39e-36 133
MS.gene31697.t1 AT3G51080 34.304 309 157 10 6 298 11 289 3.10e-34 128
MS.gene31697.t1 AT3G24050 74.286 70 18 0 229 298 193 262 2.58e-33 124
MS.gene31697.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene31697.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene31697.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene31697.t1 AT1G08000 70.833 72 21 0 225 296 213 284 3.52e-31 120
MS.gene31697.t1 AT1G08000 70.833 72 21 0 225 296 213 284 3.52e-31 120
MS.gene31697.t1 AT3G54810 62.963 81 30 0 230 310 229 309 6.24e-31 119
MS.gene31697.t1 AT3G54810 62.963 81 30 0 230 310 229 309 6.24e-31 119
MS.gene31697.t1 AT2G28340 69.841 63 19 0 232 294 193 255 1.32e-26 107
MS.gene31697.t1 AT3G45170 64.179 67 24 0 232 298 117 183 2.63e-26 104

Find 117 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTCACTGTCCTTTCTTCT+TGG 0.090798 1.1:+12457026 None:intergenic
CCAATATCAGGAACGACATT+AGG 0.287162 1.1:+12457893 None:intergenic
GCAGTCTTTGCCTGCTTCCT+TGG 0.291400 1.1:+12457050 None:intergenic
TACTCTGATGTTGTAAAATC+TGG 0.292416 1.1:+12456748 None:intergenic
TATATTCAACAAGGAAGTTT+TGG 0.298704 1.1:-12457216 MS.gene31697:CDS
CTAGCTGCAGGCCTGTATTC+AGG 0.333508 1.1:+12456870 None:intergenic
CTCCGGAGACCTGTGTGTTC+CGG 0.345236 1.1:-12457843 MS.gene31697:intron
CAAAAGATGCAACTGATATC+AGG 0.358334 1.1:-12457302 MS.gene31697:CDS
CCTAATGTCGTTCCTGATAT+TGG 0.361673 1.1:-12457893 MS.gene31697:CDS
AAAACTTCCTTGTTGAATAT+AGG 0.362486 1.1:+12457218 None:intergenic
GAAATAGGAGGATGCTTTAC+GGG 0.365602 1.1:-12457378 MS.gene31697:intron
CGACGTCATTGTTGAGGTTA+AGG 0.370723 1.1:+12458038 None:intergenic
TGTTGAATATAGGACTGTTT+CGG 0.382615 1.1:+12457228 None:intergenic
AAGACACCACAATGGCGAAC+CGG 0.386976 1.1:-12456957 MS.gene31697:CDS
ACGATGCGAGTTGGAGTGTT+TGG 0.387998 1.1:+12456830 None:intergenic
AAATTCTGACAGCCAATATC+AGG 0.389939 1.1:+12457881 None:intergenic
TGAAATAGGAGGATGCTTTA+CGG 0.392306 1.1:-12457379 MS.gene31697:intron
TTACTTGATTCACCAACATA+TGG 0.405233 1.1:-12456697 MS.gene31697:CDS
AGGACTGTTTCGGTTGGGTT+GGG 0.406165 1.1:+12457238 None:intergenic
GTTGGGTTGGGAAAGCTCAC+GGG 0.412320 1.1:+12457250 None:intergenic
CAATGGCGAACCGGGCCTAA+TGG 0.414512 1.1:-12456948 MS.gene31697:CDS
CACACAGGTCTCCGGAGAAA+TGG 0.416213 1.1:+12457849 None:intergenic
CACGGTAACGGTGGAGGAAG+AGG 0.434827 1.1:+12457955 None:intergenic
CAATATCAGGAACGACATTA+GGG 0.440367 1.1:+12457894 None:intergenic
CTCTTGCTACGGGCCTTAGC+TGG 0.442400 1.1:+12457191 None:intergenic
TGTCGGAGGAAAAGGTGGTT+TGG 0.443866 1.1:+12458095 None:intergenic
GGTTGGGTTGGGAAAGCTCA+CGG 0.448750 1.1:+12457249 None:intergenic
TACATCATCTGCCTAAAATC+AGG 0.450652 1.1:+12456672 None:intergenic
GCTCACGGGGTTCTTCGTCC+TGG 0.451765 1.1:+12457264 None:intergenic
AATATAGGACTGTTTCGGTT+GGG 0.459476 1.1:+12457233 None:intergenic
TAGGACTGTTTCGGTTGGGT+TGG 0.462649 1.1:+12457237 None:intergenic
AGTGTTGTTGTCGGAGGAAA+AGG 0.462952 1.1:+12458087 None:intergenic
AAGGACAGTGACGGAGGGTC+AGG 0.466229 1.1:-12457017 MS.gene31697:CDS
GAGGCAGAAGGAAATGTTGC+GGG 0.466463 1.1:-12456790 MS.gene31697:CDS
TACTTGATTCACCAACATAT+GGG 0.466490 1.1:-12456696 MS.gene31697:CDS
CAACATTGGAAAGCCATTCC+AGG 0.469957 1.1:+12457354 None:intergenic
GTCGATTGGTGCCTGAATAC+AGG 0.470023 1.1:-12456881 MS.gene31697:CDS
AGACACCACAATGGCGAACC+GGG 0.471491 1.1:-12456956 MS.gene31697:CDS
GCCCACGAGTCCTCTTGCTA+CGG 0.473059 1.1:+12457180 None:intergenic
GGAGGATGCTTTACGGGACC+TGG 0.481852 1.1:-12457372 MS.gene31697:CDS
GAATATAGGACTGTTTCGGT+TGG 0.481982 1.1:+12457232 None:intergenic
GTTAGCTCGTCATCATTGTC+CGG 0.486841 1.1:-12457923 MS.gene31697:CDS
ATGCTTTACGGGACCTGGAA+TGG 0.494601 1.1:-12457367 MS.gene31697:CDS
GACGTGAGCTCCAGTCGCAA+GGG 0.498267 1.1:+12457156 None:intergenic
AATCAAGTAATCATCATTGT+TGG 0.499207 1.1:+12456710 None:intergenic
TGTTTGGTCAGCACAAATGT+AGG 0.504596 1.1:+12456846 None:intergenic
ATCGTAAAGTGTTGGAGCTA+CGG 0.505579 1.1:-12456812 MS.gene31697:CDS
AAGGTTGGTGTCGGAAATGA+TGG 0.507635 1.1:+12458003 None:intergenic
ACAGTGATGGTAGGTAAGGC+GGG 0.516162 1.1:+12457074 None:intergenic
GGTGGTTTGGAAAATGTTGT+TGG 0.523159 1.1:+12458108 None:intergenic
TACCGACAATTTCATTGTTG+AGG 0.524862 1.1:-12458065 MS.gene31697:CDS
AAACGATTCCTCAACAACAT+TGG 0.525151 1.1:+12457340 None:intergenic
TACCGGAACACACAGGTCTC+CGG 0.525459 1.1:+12457841 None:intergenic
ATTGACCACGGTAACGGTGG+AGG 0.527850 1.1:+12457949 None:intergenic
GCCCGTAGCAAGAGGACTCG+TGG 0.533598 1.1:-12457182 MS.gene31697:CDS
AAGATACAAGTCGGGTCGAT+TGG 0.534399 1.1:-12456895 MS.gene31697:CDS
TTCCGACACCAACCTTGACT+CGG 0.534554 1.1:-12457996 MS.gene31697:CDS
AGGCATGAAGGTGCGAAACC+AGG 0.535516 1.1:-12457282 MS.gene31697:CDS
CCCACGAGTCCTCTTGCTAC+GGG 0.537511 1.1:+12457181 None:intergenic
GACGGAGGGTCAGGTGGAGA+TGG 0.539597 1.1:-12457008 MS.gene31697:CDS
GTTGTTGTCGGAGGAAAAGG+TGG 0.541025 1.1:+12458090 None:intergenic
GAGGGTCAGGTGGAGATGGT+CGG 0.544742 1.1:-12457004 MS.gene31697:CDS
CTGCTTCCTTGGAACAGTGA+TGG 0.548423 1.1:+12457061 None:intergenic
CAACACTTTACGATGCGAGT+TGG 0.550252 1.1:+12456821 None:intergenic
TGGAACAGTGATGGTAGGTA+AGG 0.550597 1.1:+12457070 None:intergenic
CATCACTGTTCCAAGGAAGC+AGG 0.554828 1.1:-12457060 MS.gene31697:CDS
AAAGACTGCTCCAAGAAGAA+AGG 0.555772 1.1:-12457036 MS.gene31697:CDS
AACGCTATTGACCACGGTAA+CGG 0.557909 1.1:+12457943 None:intergenic
GACAGTGACGGAGGGTCAGG+TGG 0.558691 1.1:-12457014 MS.gene31697:CDS
ACAAATGTAGGGCTAGCTGC+AGG 0.560737 1.1:+12456858 None:intergenic
AGACGTGAGCTCCAGTCGCA+AGG 0.560751 1.1:+12457155 None:intergenic
GTCCTCAACAATGAAATTGT+CGG 0.566137 1.1:+12458063 None:intergenic
AACAGTGATGGTAGGTAAGG+CGG 0.571647 1.1:+12457073 None:intergenic
TAAAATCAGGTCCCATATGT+TGG 0.573858 1.1:+12456685 None:intergenic
GTTTGGTCAGCACAAATGTA+GGG 0.574012 1.1:+12456847 None:intergenic
CCCGTAGCAAGAGGACTCGT+GGG 0.574146 1.1:-12457181 MS.gene31697:CDS
TTGGGTTGGGAAAGCTCACG+GGG 0.578980 1.1:+12457251 None:intergenic
CAGCTAAGGCCCGTAGCAAG+AGG 0.579929 1.1:-12457190 MS.gene31697:CDS
GGCCGAGTCAAGGTTGGTGT+CGG 0.584263 1.1:+12457994 None:intergenic
TTAGGCCCGGTTCGCCATTG+TGG 0.587065 1.1:+12456951 None:intergenic
TTAGCTCGTCATCATTGTCC+GGG 0.587117 1.1:-12457922 MS.gene31697:CDS
GCAACTGATATCAGGCATGA+AGG 0.589173 1.1:-12457294 MS.gene31697:CDS
TTGTGGTGTAAGATACAAGT+CGG 0.589234 1.1:-12456904 MS.gene31697:CDS
AGTTGACTGTGGCCGAGTCA+AGG 0.589310 1.1:+12457984 None:intergenic
ATTCCCTACGTAGGAATGGA+AGG 0.590186 1.1:-12458136 None:intergenic
ATTGTCGGTAGTGTTGTTGT+CGG 0.590207 1.1:+12458078 None:intergenic
GGTCAGGTGGAGATGGTCGG+AGG 0.590443 1.1:-12457001 MS.gene31697:CDS
GTCGGTAGTGTTGTTGTCGG+AGG 0.590547 1.1:+12458081 None:intergenic
TACCTACCATCACTGTTCCA+AGG 0.594004 1.1:-12457067 MS.gene31697:CDS
CGTCGTCGACGTCATTGTTG+AGG 0.596242 1.1:+12458032 None:intergenic
ATGGCTTTCCAATGTTGTTG+AGG 0.597478 1.1:-12457348 MS.gene31697:CDS
AACGACATTAGGGTCGCACC+CGG 0.603894 1.1:+12457904 None:intergenic
CAACTCGCATCGTAAAGTGT+TGG 0.604228 1.1:-12456820 MS.gene31697:CDS
CTCTTCCTCCACCGTTACCG+TGG 0.606184 1.1:-12457954 MS.gene31697:CDS
TGTGGTGTAAGATACAAGTC+GGG 0.608929 1.1:-12456903 MS.gene31697:CDS
GTTGGAGCTACGGAGGCAGA+AGG 0.611025 1.1:-12456802 MS.gene31697:CDS
CGTCATTGTTGAGGTTAAGG+AGG 0.612987 1.1:+12458041 None:intergenic
GACTGTGGCCGAGTCAAGGT+TGG 0.614521 1.1:+12457988 None:intergenic
ACGTGAGCTCCAGTCGCAAG+GGG 0.619626 1.1:+12457157 None:intergenic
GCTATTGACCACGGTAACGG+TGG 0.631846 1.1:+12457946 None:intergenic
GAAGAAAGGACAGTGACGGA+GGG 0.637953 1.1:-12457022 MS.gene31697:CDS
AAAACATTATGCAACGCTTG+TGG 0.638941 1.1:-12456921 MS.gene31697:CDS
CCAAGAAGAAAGGACAGTGA+CGG 0.640630 1.1:-12457026 MS.gene31697:CDS
AGAAGAAAGGACAGTGACGG+AGG 0.643844 1.1:-12457023 MS.gene31697:CDS
TTCCTTGGAACAGTGATGGT+AGG 0.661750 1.1:+12457065 None:intergenic
AGTGATGGTAGGTAAGGCGG+GGG 0.663791 1.1:+12457076 None:intergenic
GTAAAGTGTTGGAGCTACGG+AGG 0.667005 1.1:-12456809 MS.gene31697:CDS
CAGTGATGGTAGGTAAGGCG+GGG 0.673174 1.1:+12457075 None:intergenic
GGAGGCAGAAGGAAATGTTG+CGG 0.675658 1.1:-12456791 MS.gene31697:CDS
AGTTCTGACTCAGAAGAAGA+CGG 0.679246 1.1:+12457110 None:intergenic
GGTAACGGTGGAGGAAGAGG+CGG 0.684503 1.1:+12457958 None:intergenic
TATAATATACCGGAACACAC+AGG 0.691414 1.1:+12457834 None:intergenic
AAACAGTCCTATATTCAACA+AGG 0.707758 1.1:-12457225 MS.gene31697:CDS
CGAGCTAACGCTATTGACCA+CGG 0.719172 1.1:+12457937 None:intergenic
CGTGAGCTCCAGTCGCAAGG+GGG 0.723454 1.1:+12457158 None:intergenic
TGACAGACAAGACACCACAA+TGG 0.724676 1.1:-12456965 MS.gene31697:CDS
AGAGGCGGTTGAGTTGACTG+TGG 0.744548 1.1:+12457973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATACACATATAATATAC+CGG + chr1.1:12456971-12456990 None:intergenic 20.0%
!!! TTTGTGTTGAAATTTGAAAT+AGG - chr1.1:12457399-12457418 MS.gene31697:intron 20.0%
!!! TTTTGTGATACTCAATAATT+TGG + chr1.1:12457270-12457289 None:intergenic 20.0%
! AAAACTTCCTTGTTGAATAT+AGG + chr1.1:12457577-12457596 None:intergenic 25.0%
! AATCAAGTAATCATCATTGT+TGG + chr1.1:12458085-12458104 None:intergenic 25.0%
! CTGAAATTATTGGCAAAAAA+GGG + chr1.1:12457152-12457171 None:intergenic 25.0%
!! TATATTCAACAAGGAAGTTT+TGG - chr1.1:12457576-12457595 MS.gene31697:intron 25.0%
!!! GTTTTTTCTCCTGAAATTAT+TGG + chr1.1:12457162-12457181 None:intergenic 25.0%
AAACAGTCCTATATTCAACA+AGG - chr1.1:12457567-12457586 MS.gene31697:intron 30.0%
CCTGAAATTATTGGCAAAAA+AGG + chr1.1:12457153-12457172 None:intergenic 30.0%
TACTCTGATGTTGTAAAATC+TGG + chr1.1:12458047-12458066 None:intergenic 30.0%
TACTTGATTCACCAACATAT+GGG - chr1.1:12458096-12458115 MS.gene31697:CDS 30.0%
TAGGCTAAATACAACAGAAT+GGG - chr1.1:12457189-12457208 MS.gene31697:CDS 30.0%
TGTTGAATATAGGACTGTTT+CGG + chr1.1:12457567-12457586 None:intergenic 30.0%
TTACTTGATTCACCAACATA+TGG - chr1.1:12458095-12458114 MS.gene31697:CDS 30.0%
! GCATGAGTTAGAAATTTTCA+TGG + chr1.1:12457087-12457106 None:intergenic 30.0%
! GTGTTGAAATTTGAAATAGG+AGG - chr1.1:12457402-12457421 MS.gene31697:intron 30.0%
! TGTTTCAAGAGCATATATAG+AGG - chr1.1:12457365-12457384 MS.gene31697:CDS 30.0%
!!! CCTTTTTTGCCAATAATTTC+AGG - chr1.1:12457150-12457169 MS.gene31697:CDS 30.0%
!!! GTTGTAAAATCTGGTTTTGT+TGG + chr1.1:12458038-12458057 None:intergenic 30.0%
AAAACATTATGCAACGCTTG+TGG - chr1.1:12457871-12457890 MS.gene31697:CDS 35.0%
AAACGATTCCTCAACAACAT+TGG + chr1.1:12457455-12457474 None:intergenic 35.0%
AAATTCTGACAGCCAATATC+AGG + chr1.1:12456914-12456933 None:intergenic 35.0%
AATATAGGACTGTTTCGGTT+GGG + chr1.1:12457562-12457581 None:intergenic 35.0%
AGGAGAAAAAACAACTAGCT+AGG - chr1.1:12457170-12457189 MS.gene31697:CDS 35.0%
AGGCTAAATACAACAGAATG+GGG - chr1.1:12457190-12457209 MS.gene31697:CDS 35.0%
CAAAAGATGCAACTGATATC+AGG - chr1.1:12457490-12457509 MS.gene31697:intron 35.0%
CAATATCAGGAACGACATTA+GGG + chr1.1:12456901-12456920 None:intergenic 35.0%
CTAGGCTAAATACAACAGAA+TGG - chr1.1:12457188-12457207 MS.gene31697:CDS 35.0%
GTCCTCAACAATGAAATTGT+CGG + chr1.1:12456732-12456751 None:intergenic 35.0%
TAAAATCAGGTCCCATATGT+TGG + chr1.1:12458110-12458129 None:intergenic 35.0%
TACATCATCTGCCTAAAATC+AGG + chr1.1:12458123-12458142 None:intergenic 35.0%
TACCGACAATTTCATTGTTG+AGG - chr1.1:12456727-12456746 MS.gene31697:CDS 35.0%
TATAATATACCGGAACACAC+AGG + chr1.1:12456961-12456980 None:intergenic 35.0%
TGAAATAGGAGGATGCTTTA+CGG - chr1.1:12457413-12457432 MS.gene31697:intron 35.0%
TTGTGGTGTAAGATACAAGT+CGG - chr1.1:12457888-12457907 MS.gene31697:CDS 35.0%
! AACATATGGGACCTGATTTT+AGG - chr1.1:12458109-12458128 MS.gene31697:CDS 35.0%
!! AAGCGTTGCATAATGTTTTC+GGG + chr1.1:12457870-12457889 None:intergenic 35.0%
!! CAAGCGTTGCATAATGTTTT+CGG + chr1.1:12457871-12457890 None:intergenic 35.0%
!!! AAATCTGGTTTTGTTGGTGT+TGG + chr1.1:12458032-12458051 None:intergenic 35.0%
AAAGACTGCTCCAAGAAGAA+AGG - chr1.1:12457756-12457775 MS.gene31697:intron 40.0%
ATGGCTTTCCAATGTTGTTG+AGG - chr1.1:12457444-12457463 MS.gene31697:intron 40.0%
CCAATATCAGGAACGACATT+AGG + chr1.1:12456902-12456921 None:intergenic 40.0%
CCTAATGTCGTTCCTGATAT+TGG - chr1.1:12456899-12456918 MS.gene31697:CDS 40.0%
GAAATAGGAGGATGCTTTAC+GGG - chr1.1:12457414-12457433 MS.gene31697:intron 40.0%
GAATATAGGACTGTTTCGGT+TGG + chr1.1:12457563-12457582 None:intergenic 40.0%
GTTTGGTCAGCACAAATGTA+GGG + chr1.1:12457948-12457967 None:intergenic 40.0%
TGTGGTGTAAGATACAAGTC+GGG - chr1.1:12457889-12457908 MS.gene31697:CDS 40.0%
TGTTTGGTCAGCACAAATGT+AGG + chr1.1:12457949-12457968 None:intergenic 40.0%
! AGTTCTGACTCAGAAGAAGA+CGG + chr1.1:12457685-12457704 None:intergenic 40.0%
! ATTGTCGGTAGTGTTGTTGT+CGG + chr1.1:12456717-12456736 None:intergenic 40.0%
! GGTGGTTTGGAAAATGTTGT+TGG + chr1.1:12456687-12456706 None:intergenic 40.0%
! TTTTCTGACAGCCATTTCTC+CGG - chr1.1:12456932-12456951 MS.gene31697:CDS 40.0%
!! ATCGTAAAGTGTTGGAGCTA+CGG - chr1.1:12457980-12457999 MS.gene31697:CDS 40.0%
!! CATAATGTTTTCGGGCCATT+AGG + chr1.1:12457862-12457881 None:intergenic 40.0%
AACAGTGATGGTAGGTAAGG+CGG + chr1.1:12457722-12457741 None:intergenic 45.0%
AACGCTATTGACCACGGTAA+CGG + chr1.1:12456852-12456871 None:intergenic 45.0%
AAGATACAAGTCGGGTCGAT+TGG - chr1.1:12457897-12457916 MS.gene31697:CDS 45.0%
ACAGAATGGGGCACATTTCA+CGG - chr1.1:12457202-12457221 MS.gene31697:CDS 45.0%
CAACACTTTACGATGCGAGT+TGG + chr1.1:12457974-12457993 None:intergenic 45.0%
CAACATTGGAAAGCCATTCC+AGG + chr1.1:12457441-12457460 None:intergenic 45.0%
CAACTCGCATCGTAAAGTGT+TGG - chr1.1:12457972-12457991 MS.gene31697:CDS 45.0%
CCAAGAAGAAAGGACAGTGA+CGG - chr1.1:12457766-12457785 MS.gene31697:intron 45.0%
CGACGTCATTGTTGAGGTTA+AGG + chr1.1:12456757-12456776 None:intergenic 45.0%
CGTCATTGTTGAGGTTAAGG+AGG + chr1.1:12456754-12456773 None:intergenic 45.0%
GCAACTGATATCAGGCATGA+AGG - chr1.1:12457498-12457517 MS.gene31697:intron 45.0%
GTTAGCTCGTCATCATTGTC+CGG - chr1.1:12456869-12456888 MS.gene31697:CDS 45.0%
TACCTACCATCACTGTTCCA+AGG - chr1.1:12457725-12457744 MS.gene31697:intron 45.0%
TGACAGACAAGACACCACAA+TGG - chr1.1:12457827-12457846 MS.gene31697:intron 45.0%
TGGAACAGTGATGGTAGGTA+AGG + chr1.1:12457725-12457744 None:intergenic 45.0%
TTAGCTCGTCATCATTGTCC+GGG - chr1.1:12456870-12456889 MS.gene31697:CDS 45.0%
TTCCTTGGAACAGTGATGGT+AGG + chr1.1:12457730-12457749 None:intergenic 45.0%
! AGTGTTGTTGTCGGAGGAAA+AGG + chr1.1:12456708-12456727 None:intergenic 45.0%
!! AAGGTTGGTGTCGGAAATGA+TGG + chr1.1:12456792-12456811 None:intergenic 45.0%
!! TGAGGAATCGTTTTCAAGCG+AGG - chr1.1:12457462-12457481 MS.gene31697:intron 45.0%
!!! GGAAGTTTTGGTTCCAGCTA+AGG - chr1.1:12457588-12457607 MS.gene31697:intron 45.0%
AAGACACCACAATGGCGAAC+CGG - chr1.1:12457835-12457854 MS.gene31697:intron 50.0%
ACAGTGATGGTAGGTAAGGC+GGG + chr1.1:12457721-12457740 None:intergenic 50.0%
AGAAGAAAGGACAGTGACGG+AGG - chr1.1:12457769-12457788 MS.gene31697:intron 50.0%
AGGACTGTTTCGGTTGGGTT+GGG + chr1.1:12457557-12457576 None:intergenic 50.0%
ATGCTTTACGGGACCTGGAA+TGG - chr1.1:12457425-12457444 MS.gene31697:intron 50.0%
CATCACTGTTCCAAGGAAGC+AGG - chr1.1:12457732-12457751 MS.gene31697:intron 50.0%
CCGTCACTGTCCTTTCTTCT+TGG + chr1.1:12457769-12457788 None:intergenic 50.0%
CGAGCTAACGCTATTGACCA+CGG + chr1.1:12456858-12456877 None:intergenic 50.0%
CTGCTTCCTTGGAACAGTGA+TGG + chr1.1:12457734-12457753 None:intergenic 50.0%
GAGGCAGAAGGAAATGTTGC+GGG - chr1.1:12458002-12458021 MS.gene31697:CDS 50.0%
GGAGGCAGAAGGAAATGTTG+CGG - chr1.1:12458001-12458020 MS.gene31697:CDS 50.0%
GTTGTTGTCGGAGGAAAAGG+TGG + chr1.1:12456705-12456724 None:intergenic 50.0%
TAGGACTGTTTCGGTTGGGT+TGG + chr1.1:12457558-12457577 None:intergenic 50.0%
TGTCGGAGGAAAAGGTGGTT+TGG + chr1.1:12456700-12456719 None:intergenic 50.0%
TTCCGACACCAACCTTGACT+CGG - chr1.1:12456796-12456815 MS.gene31697:CDS 50.0%
! ACGATGCGAGTTGGAGTGTT+TGG + chr1.1:12457965-12457984 None:intergenic 50.0%
! GAAGAAAGGACAGTGACGGA+GGG - chr1.1:12457770-12457789 MS.gene31697:intron 50.0%
! GTCGATTGGTGCCTGAATAC+AGG - chr1.1:12457911-12457930 MS.gene31697:CDS 50.0%
!! ACAAATGTAGGGCTAGCTGC+AGG + chr1.1:12457937-12457956 None:intergenic 50.0%
!! GTAAAGTGTTGGAGCTACGG+AGG - chr1.1:12457983-12458002 MS.gene31697:CDS 50.0%
AACGACATTAGGGTCGCACC+CGG + chr1.1:12456891-12456910 None:intergenic 55.0%
AGACACCACAATGGCGAACC+GGG - chr1.1:12457836-12457855 MS.gene31697:intron 55.0%
AGTGATGGTAGGTAAGGCGG+GGG + chr1.1:12457719-12457738 None:intergenic 55.0%
AGTTGACTGTGGCCGAGTCA+AGG + chr1.1:12456811-12456830 None:intergenic 55.0%
CACACAGGTCTCCGGAGAAA+TGG + chr1.1:12456946-12456965 None:intergenic 55.0%
CAGTGATGGTAGGTAAGGCG+GGG + chr1.1:12457720-12457739 None:intergenic 55.0%
CGTCGTCGACGTCATTGTTG+AGG + chr1.1:12456763-12456782 None:intergenic 55.0%
CTAGCTGCAGGCCTGTATTC+AGG + chr1.1:12457925-12457944 None:intergenic 55.0%
GCAGTCTTTGCCTGCTTCCT+TGG + chr1.1:12457745-12457764 None:intergenic 55.0%
TACCGGAACACACAGGTCTC+CGG + chr1.1:12456954-12456973 None:intergenic 55.0%
! AGGCATGAAGGTGCGAAACC+AGG - chr1.1:12457510-12457529 MS.gene31697:intron 55.0%
! ATTGACCACGGTAACGGTGG+AGG + chr1.1:12456846-12456865 None:intergenic 55.0%
! GCTATTGACCACGGTAACGG+TGG + chr1.1:12456849-12456868 None:intergenic 55.0%
! GTCGGTAGTGTTGTTGTCGG+AGG + chr1.1:12456714-12456733 None:intergenic 55.0%
!! AGAGGCGGTTGAGTTGACTG+TGG + chr1.1:12456822-12456841 None:intergenic 55.0%
!! GGTTGGGTTGGGAAAGCTCA+CGG + chr1.1:12457546-12457565 None:intergenic 55.0%
!! GTTGGGTTGGGAAAGCTCAC+GGG + chr1.1:12457545-12457564 None:intergenic 55.0%
!! TGTTTTCGGGCCATTAGGCC+CGG + chr1.1:12457857-12457876 None:intergenic 55.0%
!! TTGGGTTGGGAAAGCTCACG+GGG + chr1.1:12457544-12457563 None:intergenic 55.0%
ACGTGAGCTCCAGTCGCAAG+GGG + chr1.1:12457638-12457657 None:intergenic 60.0%
AGACGTGAGCTCCAGTCGCA+AGG + chr1.1:12457640-12457659 None:intergenic 60.0%
ATGGTAGGTAAGGCGGGGGT+AGG + chr1.1:12457715-12457734 None:intergenic 60.0%
CAATGGCGAACCGGGCCTAA+TGG - chr1.1:12457844-12457863 MS.gene31697:CDS 60.0%
CAGCTAAGGCCCGTAGCAAG+AGG - chr1.1:12457602-12457621 MS.gene31697:intron 60.0%
CCCACGAGTCCTCTTGCTAC+GGG + chr1.1:12457614-12457633 None:intergenic 60.0%
CCCGTAGCAAGAGGACTCGT+GGG - chr1.1:12457611-12457630 MS.gene31697:intron 60.0%
CTCCGGAGACCTGTGTGTTC+CGG - chr1.1:12456949-12456968 MS.gene31697:CDS 60.0%
CTCTTCCTCCACCGTTACCG+TGG - chr1.1:12456838-12456857 MS.gene31697:CDS 60.0%
CTCTTGCTACGGGCCTTAGC+TGG + chr1.1:12457604-12457623 None:intergenic 60.0%
GACGTGAGCTCCAGTCGCAA+GGG + chr1.1:12457639-12457658 None:intergenic 60.0%
GACTGTGGCCGAGTCAAGGT+TGG + chr1.1:12456807-12456826 None:intergenic 60.0%
GAGGGTCAGGTGGAGATGGT+CGG - chr1.1:12457788-12457807 MS.gene31697:intron 60.0%
GCCCACGAGTCCTCTTGCTA+CGG + chr1.1:12457615-12457634 None:intergenic 60.0%
GGAGGATGCTTTACGGGACC+TGG - chr1.1:12457420-12457439 MS.gene31697:intron 60.0%
GTTGGAGCTACGGAGGCAGA+AGG - chr1.1:12457990-12458009 MS.gene31697:CDS 60.0%
! AAGGACAGTGACGGAGGGTC+AGG - chr1.1:12457775-12457794 MS.gene31697:intron 60.0%
! CACGGTAACGGTGGAGGAAG+AGG + chr1.1:12456840-12456859 None:intergenic 60.0%
! GGTAACGGTGGAGGAAGAGG+CGG + chr1.1:12456837-12456856 None:intergenic 60.0%
! TTAGGCCCGGTTCGCCATTG+TGG + chr1.1:12457844-12457863 None:intergenic 60.0%
!! GGCCGAGTCAAGGTTGGTGT+CGG + chr1.1:12456801-12456820 None:intergenic 60.0%
CGTGAGCTCCAGTCGCAAGG+GGG + chr1.1:12457637-12457656 None:intergenic 65.0%
GACGGAGGGTCAGGTGGAGA+TGG - chr1.1:12457784-12457803 MS.gene31697:intron 65.0%
GCCCGTAGCAAGAGGACTCG+TGG - chr1.1:12457610-12457629 MS.gene31697:intron 65.0%
GCTCACGGGGTTCTTCGTCC+TGG + chr1.1:12457531-12457550 None:intergenic 65.0%
GGTCAGGTGGAGATGGTCGG+AGG - chr1.1:12457791-12457810 MS.gene31697:intron 65.0%
! GACAGTGACGGAGGGTCAGG+TGG - chr1.1:12457778-12457797 MS.gene31697:intron 65.0%
CTCGTGGGCCCCCTTGCGAC+TGG - chr1.1:12457626-12457645 MS.gene31697:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 12456671 12458143 12456671 ID=MS.gene31697
chr1.1 mRNA 12456671 12458143 12456671 ID=MS.gene31697.t1;Parent=MS.gene31697
chr1.1 exon 12457844 12458143 12457844 ID=MS.gene31697.t1.exon1;Parent=MS.gene31697.t1
chr1.1 CDS 12457844 12458143 12457844 ID=cds.MS.gene31697.t1;Parent=MS.gene31697.t1
chr1.1 exon 12456671 12457393 12456671 ID=MS.gene31697.t1.exon2;Parent=MS.gene31697.t1
chr1.1 CDS 12456671 12457393 12456671 ID=cds.MS.gene31697.t1;Parent=MS.gene31697.t1
Gene Sequence

>MS.gene31697

ATGGAAGGCACGACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCGGCCACAGTCAACTCAACCGCCTCTTCCTCCACCGTTACCGTGGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTGTTCCGGTATATTATATGTGTATATGCATTATCAATTATTATCTTTTTAAAAAAATATAAAAAGCACATAGACACTTCACAATTTTCTAACTCGTTTAATTTGACTTTTTCTATTAGTTCCATGAAAATTTCTAACTCATGCACGTATAACATATAACATCACATTGCATTTGAAGATTTTGAACCCTTTTTTGCCAATAATTTCAGGAGAAAAAACAACTAGCTAGGCTAAATACAACAGAATGGGGCACATTTCACGGTTCGAAAACTAAATTTTATTGCAACATTTGTTTCAATTATTACCAAATTATTGAGTATCACAAAAATAGTACACGTGAAAGCATTAGTATGACTATGAACAAAAAATGTGTATGATTGATTACTTGTGTACAATGTAATATGTTTCAAGAGCATATATAGAGGAATAATTATTGTTTGTGTTGAAATTTGAAATAGGAGGATGCTTTACGGGACCTGGAATGGCTTTCCAATGTTGTTGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCGAAACCAGGACGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTTCTTATTCCTACCCCCGCCTTACCTACCATCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGCCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCCAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG
Protein sequence

>MS.gene31697.t1

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATVNSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGCQNFSDSHFSGDLCVPEDALRDLEWLSNVVEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPALPTITVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM