AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31811

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31811.t1 MTR_0402s0040 73.171 205 54 1 9 213 1 204 3.53e-99 310
MS.gene31811.t1 MTR_0402s0040 67.196 189 48 3 365 553 318 492 5.86e-77 252
MS.gene31811.t1 MTR_7g113010 81.761 159 15 1 1 159 424 568 7.47e-83 270
MS.gene31811.t1 MTR_1g057920 92.683 123 9 0 1 123 1 123 1.57e-79 246
MS.gene31811.t1 MTR_6g017200 76.423 123 29 0 8 130 32 154 8.42e-61 198
MS.gene31811.t1 MTR_5g015480 59.509 163 62 1 1 163 27 185 3.66e-55 187
MS.gene31811.t1 MTR_2g070590 72.650 117 32 0 20 136 3 119 3.20e-53 177
MS.gene31811.t1 MTR_0558s0020 33.871 248 143 5 48 275 50 296 6.74e-42 152
MS.gene31811.t1 MTR_6g051425 28.713 303 186 7 36 315 19 314 3.17e-39 146
MS.gene31811.t1 MTR_8g446020 35.096 208 122 3 80 275 50 256 1.22e-36 137
MS.gene31811.t1 MTR_6g090505 35.377 212 120 4 79 274 20 230 6.13e-35 135
MS.gene31811.t1 MTR_1g050985 90.000 60 6 0 104 163 39 98 1.96e-31 117
MS.gene31811.t1 MTR_0137s0040 56.731 104 43 1 1 102 1 104 1.11e-30 115
MS.gene31811.t1 MTR_1g070355 29.719 249 161 6 29 269 67 309 5.68e-28 118
MS.gene31811.t1 MTR_1g083640 29.258 229 141 5 38 246 55 282 4.21e-27 111
MS.gene31811.t1 MTR_0291s0060 67.568 74 24 0 11 84 12 85 1.87e-25 100
MS.gene31811.t1 MTR_4g035820 28.788 264 175 8 25 279 65 324 8.91e-24 106
MS.gene31811.t1 MTR_7g074790 36.000 175 84 5 34 204 10 160 1.34e-21 94.4
MS.gene31811.t1 MTR_7g446520 29.508 244 154 4 38 280 92 318 1.43e-21 96.7
MS.gene31811.t1 MTR_0337s0040 29.480 173 109 3 80 240 51 222 1.96e-20 90.9
MS.gene31811.t1 MTR_5g076070 25.862 232 162 6 37 263 56 282 3.92e-20 91.3
MS.gene31811.t1 MTR_7g446480 36.364 165 102 2 121 283 151 314 6.77e-20 91.3
MS.gene31811.t1 MTR_5g039760 32.663 199 102 6 36 230 12 182 5.87e-19 85.5
MS.gene31811.t1 MTR_7g446510 35.758 165 103 2 121 283 166 329 7.84e-19 88.2
MS.gene31811.t1 MTR_4g067290 39.640 111 65 2 28 138 50 158 4.30e-17 81.3
MS.gene31811.t1 MTR_4g067290 39.640 111 65 2 28 138 50 158 4.38e-17 81.3
MS.gene31811.t1 MTR_1g008290 34.043 141 87 3 89 228 6 141 4.71e-17 78.6
MS.gene31811.t1 MTR_4g067290 39.640 111 65 2 28 138 70 178 7.80e-17 80.9
MS.gene31811.t1 MTR_4g067290 39.640 111 65 2 28 138 68 176 8.01e-17 80.9
MS.gene31811.t1 MTR_4g067290 39.640 111 65 2 28 138 70 178 8.29e-17 80.9
MS.gene31811.t1 MTR_4g102720 29.762 168 82 3 34 201 7 138 1.17e-16 79.7
MS.gene31811.t1 MTR_4g067290 39.640 111 65 2 28 138 110 218 1.80e-16 80.9
MS.gene31811.t1 MTR_2g098920 39.048 105 62 2 34 138 80 182 1.06e-15 77.8
MS.gene31811.t1 MTR_7g061980 38.938 113 65 3 34 145 10 119 1.36e-15 73.6
MS.gene31811.t1 MTR_3g450850 24.603 252 172 6 37 274 50 297 1.99e-15 78.2
MS.gene31811.t1 MTR_3g006370 38.095 105 63 2 34 137 50 153 9.32e-15 74.3
MS.gene31811.t1 MTR_5g045210 40.385 104 58 2 334 437 9 108 3.54e-14 72.0
MS.gene31811.t1 MTR_1g019850 30.968 155 98 2 14 167 50 196 5.26e-14 72.4
MS.gene31811.t1 MTR_2g014100 23.232 198 134 3 38 217 48 245 7.61e-14 72.0
MS.gene31811.t1 MTR_1g055240 27.891 147 94 2 83 218 4 149 9.23e-14 69.3
MS.gene31811.t1 MTR_0019s0290 27.465 142 91 2 83 213 19 159 5.85e-13 67.4
MS.gene31811.t1 MTR_1g091013 46.753 77 30 1 26 102 4 69 2.35e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31811.t1 AT4G38180 36.605 377 228 7 1 371 39 410 2.72e-72 246
MS.gene31811.t1 AT4G15090 33.333 342 207 8 34 366 51 380 1.87e-54 197
MS.gene31811.t1 AT4G15090 33.333 342 207 8 34 366 51 380 1.87e-54 197
MS.gene31811.t1 AT4G15090 33.333 342 207 8 34 366 51 380 1.87e-54 197
MS.gene31811.t1 AT4G15090 33.333 342 207 8 34 366 51 380 1.87e-54 197
MS.gene31811.t1 AT4G15090 33.333 342 207 8 34 366 51 380 1.87e-54 197
MS.gene31811.t1 AT1G76320 34.268 321 188 8 38 351 1 305 1.57e-50 184
MS.gene31811.t1 AT1G76320 34.268 321 188 8 38 351 1 305 3.02e-50 185
MS.gene31811.t1 AT1G76320 34.268 321 188 8 38 351 1 305 3.20e-50 184
MS.gene31811.t1 AT1G76320 34.268 321 188 8 38 351 1 305 3.20e-50 184
MS.gene31811.t1 AT1G10240 31.092 357 226 8 2 350 25 369 9.16e-49 180
MS.gene31811.t1 AT1G10240 31.092 357 226 8 2 350 25 369 9.16e-49 180
MS.gene31811.t1 AT3G22170 29.290 338 200 6 27 350 64 376 2.88e-42 162
MS.gene31811.t1 AT3G22170 29.290 338 200 6 27 350 64 376 2.88e-42 162
MS.gene31811.t1 AT3G06250 30.120 332 189 8 34 362 190 481 3.88e-42 162
MS.gene31811.t1 AT3G06250 30.120 332 189 8 34 362 190 481 3.88e-42 162
MS.gene31811.t1 AT3G06250 30.120 332 189 8 34 362 190 481 3.88e-42 162
MS.gene31811.t1 AT2G27110 30.435 345 205 10 8 350 27 338 5.50e-41 159
MS.gene31811.t1 AT2G27110 30.435 345 205 10 8 350 27 338 5.50e-41 159
MS.gene31811.t1 AT5G18960 29.240 342 199 9 23 359 197 500 8.42e-39 152
MS.gene31811.t1 AT5G18960 31.933 119 67 2 18 136 27 131 1.72e-12 70.9
MS.gene31811.t1 AT5G18960 29.240 342 199 9 23 359 197 500 8.42e-39 152
MS.gene31811.t1 AT5G18960 31.933 119 67 2 18 136 27 131 1.72e-12 70.9
MS.gene31811.t1 AT5G28530 28.267 329 209 8 34 342 55 376 4.73e-38 149
MS.gene31811.t1 AT5G28530 28.267 329 209 8 34 342 55 376 4.73e-38 149
MS.gene31811.t1 AT5G28530 28.267 329 209 8 34 342 55 376 4.85e-38 149
MS.gene31811.t1 AT2G32250 28.395 324 187 6 37 359 41 320 4.43e-37 147
MS.gene31811.t1 AT2G32250 28.395 324 187 6 37 359 41 320 4.50e-37 147
MS.gene31811.t1 AT2G32250 28.395 324 187 6 37 359 41 320 4.50e-37 147
MS.gene31811.t1 AT2G32250 28.395 324 187 6 37 359 41 320 4.50e-37 147
MS.gene31811.t1 AT2G32250 28.395 324 187 6 37 359 41 320 4.73e-37 147
MS.gene31811.t1 AT2G32250 28.395 324 187 6 37 359 41 320 4.73e-37 147
MS.gene31811.t1 AT2G32250 28.173 323 187 6 38 359 1 279 2.79e-36 144
MS.gene31811.t1 AT2G32250 28.173 323 187 6 38 359 1 279 3.23e-36 144
MS.gene31811.t1 AT1G80010 29.070 344 222 9 19 350 80 413 2.84e-33 135
MS.gene31811.t1 AT1G52520 29.738 343 193 12 33 360 84 393 2.72e-32 132
MS.gene31811.t1 AT4G19990 27.976 336 190 7 37 357 24 322 2.31e-31 129
MS.gene31811.t1 AT4G19990 27.976 336 190 7 37 357 24 322 2.31e-31 129
MS.gene31811.t1 AT4G19990 27.976 336 190 7 37 357 24 322 3.60e-31 129
MS.gene31811.t1 AT4G19990 27.976 336 190 7 37 357 24 322 3.60e-31 129
MS.gene31811.t1 AT4G19990 27.976 336 190 7 37 357 24 322 3.62e-31 129
MS.gene31811.t1 AT4G19990 27.976 336 190 7 37 357 38 336 3.99e-31 129
MS.gene31811.t1 AT2G27110 42.446 139 79 1 213 350 55 193 7.87e-31 127
MS.gene31811.t1 AT4G38170 39.098 133 75 3 210 340 18 146 2.84e-24 107
MS.gene31811.t1 AT4G19990 27.667 300 165 7 73 357 3 265 3.04e-24 107
MS.gene31811.t1 AT5G28530 24.444 315 176 10 34 342 55 313 1.28e-19 93.2
MS.gene31811.t1 AT5G28530 24.444 315 176 10 34 342 55 313 1.39e-19 92.8
MS.gene31811.t1 AT3G59470 40.952 105 60 2 34 138 70 172 1.74e-17 82.8
MS.gene31811.t1 AT3G59470 40.952 105 60 2 34 138 70 172 1.74e-17 82.8
MS.gene31811.t1 AT3G59470 40.952 105 60 2 34 138 82 184 2.73e-17 82.4
MS.gene31811.t1 AT3G07500 39.048 105 63 1 34 138 33 136 1.16e-16 79.7
MS.gene31811.t1 AT2G43280 38.261 115 67 3 34 145 22 135 1.31e-15 76.3
MS.gene31811.t1 AT4G12850 34.127 126 76 3 34 159 11 129 1.60e-14 71.2
MS.gene31811.t1 AT4G12850 36.893 103 61 2 34 136 11 109 2.53e-13 67.8
MS.gene31811.t1 AT4G12850 36.893 103 61 2 34 136 11 109 5.15e-13 68.2
MS.gene31811.t1 AT2G43280 37.000 100 59 3 49 145 2 100 5.82e-12 64.7

Find 85 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAATAACAAATATATTT+TGG 0.090860 1.1:+14147855 MS.gene31811:CDS
GTTGAGTTCCATTGCTTAAT+TGG 0.222933 1.1:-14148942 None:intergenic
TTCCAGATTGTGTCGATAAA+TGG 0.224458 1.1:+14147165 MS.gene31811:CDS
TTCATCATTCGCAATTGATA+TGG 0.254192 1.1:-14148604 None:intergenic
CTTTAGTGATTGCTTCCTTT+TGG 0.266356 1.1:-14147744 None:intergenic
TTTGGTATTCGTCGAGAATA+TGG 0.287007 1.1:+14147323 MS.gene31811:CDS
GCACAGATGATTAATGATTA+TGG 0.297180 1.1:+14147884 MS.gene31811:CDS
ATCTCACTTGATCGAAATAT+AGG 0.318826 1.1:+14147488 MS.gene31811:CDS
AATGATTACAGTAAAAGAAT+TGG 0.319753 1.1:+14147299 MS.gene31811:CDS
TACAGTAAAAGAATTGGATT+TGG 0.322823 1.1:+14147305 MS.gene31811:CDS
ATTGTCTTGGGAGATGAATC+TGG 0.337532 1.1:+14147623 MS.gene31811:CDS
TAAGCAAATTCTTAAGGTCT+TGG 0.340024 1.1:-14147718 None:intergenic
CTAAAAGACGTTATAAATCT+TGG 0.340563 1.1:+14148694 MS.gene31811:CDS
CATTGTACCGCTTCATGAAA+TGG 0.342244 1.1:-14148422 None:intergenic
CACCACTTACAAGACAAATA+AGG 0.342570 1.1:+14147934 MS.gene31811:CDS
ACCCATTTATCGACACAATC+TGG 0.348105 1.1:-14147167 None:intergenic
CGACCTTTGGGTGTATTTGT+TGG 0.350273 1.1:+14147962 MS.gene31811:CDS
AAATAAGGATTATCGACCTT+TGG 0.372421 1.1:+14147949 MS.gene31811:CDS
TCGAAATATAGGGAAATATA+AGG 0.373401 1.1:+14147499 MS.gene31811:CDS
GGAAATAAAAGCATAATAGA+TGG 0.382034 1.1:+14147344 MS.gene31811:CDS
TGGTTTAGTACAATTGTTAC+CGG 0.405047 1.1:+14148809 MS.gene31811:CDS
AGGAAGCAATCACTAAAGTA+TGG 0.405760 1.1:+14147749 MS.gene31811:CDS
GCTGGACTCTTCATAAACTT+TGG 0.408472 1.1:-14148514 None:intergenic
CTCCCATCGACACATATCTA+AGG 0.410986 1.1:+14147586 MS.gene31811:CDS
AATAAGGATTATCGACCTTT+GGG 0.412280 1.1:+14147950 MS.gene31811:CDS
ATCCTTATTTGTCTTGTAAG+TGG 0.412387 1.1:-14147936 None:intergenic
TCTCACTTGATCGAAATATA+GGG 0.426432 1.1:+14147489 MS.gene31811:CDS
TGCCAATAGTGGACCTCACT+TGG 0.426768 1.1:+14147235 MS.gene31811:CDS
TTGTTGGACTTAATAATCAT+AGG 0.427337 1.1:+14147978 MS.gene31811:CDS
ATTAATGATTATGGATACTT+TGG 0.430083 1.1:+14147893 MS.gene31811:CDS
TCCCAAGTGAGGTCCACTAT+TGG 0.441740 1.1:-14147237 None:intergenic
ATTGTACCGCTTCATGAAAT+GGG 0.445421 1.1:-14148421 None:intergenic
TCAAATAACCACTGAAAAGA+AGG 0.449244 1.1:-14148046 None:intergenic
TCCAGATTGTGTCGATAAAT+GGG 0.451957 1.1:+14147166 MS.gene31811:CDS
GAAATTACAATGAGTTAACT+TGG 0.462389 1.1:-14148996 None:intergenic
GACACTGTTGGCGAGGCAAA+AGG 0.467223 1.1:+14148642 MS.gene31811:CDS
TGCATCTTGATCTGTTAGAA+TGG 0.469730 1.1:-14148107 None:intergenic
AGAATTTGCTTAAAACCAAA+AGG 0.473219 1.1:+14147729 MS.gene31811:CDS
AAAGAAGGTATTGCCAATAG+TGG 0.477439 1.1:+14147224 MS.gene31811:CDS
GGAAATAATCAAGGTTGGAG+TGG 0.484406 1.1:+14148372 MS.gene31811:CDS
TTGAAAATCATAAAAGAATG+AGG 0.485720 1.1:-14147819 None:intergenic
TTGTTTGAAATATGTCATCA+AGG 0.487222 1.1:-14147783 None:intergenic
ATTCCACTTGATTCTCCATC+CGG 0.489687 1.1:-14148570 None:intergenic
GAAATAATCAAGGTTGGAGT+GGG 0.495856 1.1:+14148373 MS.gene31811:CDS
ATATATTGATGCAAATCTCT+TGG 0.499334 1.1:-14147653 None:intergenic
GCTGGTGGGGTAGAGATTGT+CGG 0.503945 1.1:+14147686 MS.gene31811:CDS
TGGACAAGAGAGGCAAGGTT+GGG 0.508068 1.1:+14148351 MS.gene31811:CDS
TCTAGAGCAGAAACAAGAAC+AGG 0.521464 1.1:+14147446 MS.gene31811:CDS
AACAGGATGCACATCGCGTA+TGG 0.525849 1.1:+14147463 MS.gene31811:CDS
ATGGACAAGAGAGGCAAGGT+TGG 0.527313 1.1:+14148350 MS.gene31811:CDS
AATGTTCATCATGAGAAAGA+AGG 0.529094 1.1:+14147209 MS.gene31811:CDS
AACACTACATACTAAAACGA+TGG 0.530470 1.1:+14148331 MS.gene31811:CDS
CATACTCATGTGGAATAAGA+AGG 0.549889 1.1:-14147550 None:intergenic
TGAAAATCATAAAAGAATGA+GGG 0.563844 1.1:-14147818 None:intergenic
GGGAATGAAGTTTGAATCTG+AGG 0.567573 1.1:+14147256 MS.gene31811:CDS
GTGCCTTAGATATGTGTCGA+TGG 0.567824 1.1:-14147589 None:intergenic
GCCAATAGTGGACCTCACTT+GGG 0.571514 1.1:+14147236 MS.gene31811:CDS
AACAGATCAAGATGCAGCAA+TGG 0.573110 1.1:+14148114 MS.gene31811:CDS
GGTTGGGAAATAATCAAGGT+TGG 0.576405 1.1:+14148367 MS.gene31811:CDS
TATATCTAAGCAAGCTGGTG+GGG 0.581179 1.1:+14147673 MS.gene31811:CDS
ATAATCAAGGTTGGAGTGGG+AGG 0.581542 1.1:+14148376 MS.gene31811:CDS
TATATATCTAAGCAAGCTGG+TGG 0.584280 1.1:+14147671 MS.gene31811:CDS
CAATATATATCTAAGCAAGC+TGG 0.586937 1.1:+14147668 MS.gene31811:CDS
GCAAGGTTGGGAAATAATCA+AGG 0.588344 1.1:+14148363 MS.gene31811:CDS
TTGATCAATTTAAGCAGCTG+AGG 0.590430 1.1:-14148453 None:intergenic
TGCCTTAGATATGTGTCGAT+GGG 0.595757 1.1:-14147588 None:intergenic
ATATATCTAAGCAAGCTGGT+GGG 0.601684 1.1:+14147672 MS.gene31811:CDS
CAACAAAGACACTGTTGGCG+AGG 0.606814 1.1:+14148635 MS.gene31811:CDS
GGATGGAGAATCAAGTGGAA+TGG 0.607473 1.1:+14148572 MS.gene31811:CDS
TCTGCTCTAGACTCCGCCGT+CGG 0.612404 1.1:-14147434 None:intergenic
TCAAACTTCATTCCCAAGTG+AGG 0.614294 1.1:-14147248 None:intergenic
GACAACAACAAAGACACTGT+TGG 0.616614 1.1:+14148630 MS.gene31811:CDS
TATCCGGATGGAGAATCAAG+TGG 0.622649 1.1:+14148567 MS.gene31811:CDS
CAATCAAGCCAATTAAGCAA+TGG 0.626444 1.1:+14148934 MS.gene31811:CDS
ATCATATGAACATACTCATG+TGG 0.630267 1.1:-14147560 None:intergenic
AACGATGGACAAGAGAGGCA+AGG 0.631596 1.1:+14148346 MS.gene31811:CDS
AGTCCAACAAATACACCCAA+AGG 0.632966 1.1:-14147965 None:intergenic
AAGATTCACATGCTTCAAAG+AGG 0.642884 1.1:+14147382 MS.gene31811:CDS
GGCAAAAGGCATAAAGACGA+AGG 0.643397 1.1:+14148656 MS.gene31811:CDS
AGATTCACATGCTTCAAAGA+GGG 0.654356 1.1:+14147383 MS.gene31811:CDS
TGACAAAAGACGTCAACCGA+CGG 0.667263 1.1:+14147418 MS.gene31811:CDS
AATGAAGTTTGAATCTGAGG+CGG 0.671588 1.1:+14147259 MS.gene31811:CDS
ACTAAAACGATGGACAAGAG+AGG 0.677074 1.1:+14148341 MS.gene31811:CDS
ACTCATGTGGAATAAGAAGG+TGG 0.684832 1.1:-14147547 None:intergenic
CAAAAGACGTCAACCGACGG+CGG 0.706901 1.1:+14147421 MS.gene31811:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAGTTAAATAAATGAT+AGG - chr1.1:14148875-14148894 None:intergenic 15.0%
!!! AGCTAATAACAAATATATTT+TGG + chr1.1:14147855-14147874 MS.gene31811:CDS 15.0%
!!! ATTCTTTTATGATTTTCAAA+TGG + chr1.1:14147823-14147842 MS.gene31811:CDS 15.0%
!!! GCTAATAACAAATATATTTT+GGG + chr1.1:14147856-14147875 MS.gene31811:CDS 15.0%
!! AAATTGAAAAAATCTCAAGA+TGG + chr1.1:14148789-14148808 MS.gene31811:CDS 20.0%
!! AATGATTACAGTAAAAGAAT+TGG + chr1.1:14147299-14147318 MS.gene31811:CDS 20.0%
!! ATTAATGATTATGGATACTT+TGG + chr1.1:14147893-14147912 MS.gene31811:CDS 20.0%
!! TGAAAATCATAAAAGAATGA+GGG - chr1.1:14147821-14147840 None:intergenic 20.0%
!! TTGAAAATCATAAAAGAATG+AGG - chr1.1:14147822-14147841 None:intergenic 20.0%
!!! AATAACAAATATATTTTGGG+CGG + chr1.1:14147859-14147878 MS.gene31811:CDS 20.0%
! ATATATTGATGCAAATCTCT+TGG - chr1.1:14147656-14147675 None:intergenic 25.0%
! CTAAAAGACGTTATAAATCT+TGG + chr1.1:14148694-14148713 MS.gene31811:CDS 25.0%
! GATAAAAGAAAAATACGTAC+CGG - chr1.1:14148831-14148850 None:intergenic 25.0%
! TACAGTAAAAGAATTGGATT+TGG + chr1.1:14147305-14147324 MS.gene31811:CDS 25.0%
! TATGTTGTCCAAAAAATATC+CGG + chr1.1:14148551-14148570 MS.gene31811:CDS 25.0%
! TCGAAATATAGGGAAATATA+AGG + chr1.1:14147499-14147518 MS.gene31811:CDS 25.0%
! TTGTTGGACTTAATAATCAT+AGG + chr1.1:14147978-14147997 MS.gene31811:CDS 25.0%
!! AGAATTTGCTTAAAACCAAA+AGG + chr1.1:14147729-14147748 MS.gene31811:CDS 25.0%
!! GGAAATAAAAGCATAATAGA+TGG + chr1.1:14147344-14147363 MS.gene31811:CDS 25.0%
!! TTGTTTGAAATATGTCATCA+AGG - chr1.1:14147786-14147805 None:intergenic 25.0%
!!! CAAGAAACTTTTTCTATAGA+TGG - chr1.1:14148225-14148244 None:intergenic 25.0%
!!! TGGTTTTAAGCAAATTCTTA+AGG - chr1.1:14147727-14147746 None:intergenic 25.0%
AAATAAGGATTATCGACCTT+TGG + chr1.1:14147949-14147968 MS.gene31811:CDS 30.0%
AACACTACATACTAAAACGA+TGG + chr1.1:14148331-14148350 MS.gene31811:CDS 30.0%
AATAAGGATTATCGACCTTT+GGG + chr1.1:14147950-14147969 MS.gene31811:CDS 30.0%
AATGTTCATCATGAGAAAGA+AGG + chr1.1:14147209-14147228 MS.gene31811:CDS 30.0%
ACAAGCATCAAAAATTGTCT+TGG + chr1.1:14147610-14147629 MS.gene31811:CDS 30.0%
ATCATATGAACATACTCATG+TGG - chr1.1:14147563-14147582 None:intergenic 30.0%
ATCTCACTTGATCGAAATAT+AGG + chr1.1:14147488-14147507 MS.gene31811:CDS 30.0%
CAAGCATCAAAAATTGTCTT+GGG + chr1.1:14147611-14147630 MS.gene31811:CDS 30.0%
CAATATATATCTAAGCAAGC+TGG + chr1.1:14147668-14147687 MS.gene31811:CDS 30.0%
CTCAGAAAAAGAAGCTAAAA+AGG + chr1.1:14148749-14148768 MS.gene31811:CDS 30.0%
GCACAGATGATTAATGATTA+TGG + chr1.1:14147884-14147903 MS.gene31811:CDS 30.0%
GCTTGAAAAAGAAGCTAAAA+AGG + chr1.1:14148716-14148735 MS.gene31811:CDS 30.0%
GTTATGCCAAAAACATTTCA+TGG + chr1.1:14148154-14148173 MS.gene31811:CDS 30.0%
TAAGCAAATTCTTAAGGTCT+TGG - chr1.1:14147721-14147740 None:intergenic 30.0%
TCAAATAACCACTGAAAAGA+AGG - chr1.1:14148049-14148068 None:intergenic 30.0%
TCTCACTTGATCGAAATATA+GGG + chr1.1:14147489-14147508 MS.gene31811:CDS 30.0%
TGGTTTAGTACAATTGTTAC+CGG + chr1.1:14148809-14148828 MS.gene31811:CDS 30.0%
TTCATCATTCGCAATTGATA+TGG - chr1.1:14148607-14148626 None:intergenic 30.0%
! AAACAATTCCTTCTTTTCAG+TGG + chr1.1:14148038-14148057 MS.gene31811:CDS 30.0%
! ATCCTTATTTGTCTTGTAAG+TGG - chr1.1:14147939-14147958 None:intergenic 30.0%
! CACAATCCATGAAATGTTTT+TGG - chr1.1:14148163-14148182 None:intergenic 30.0%
! CATATCGTTAACTATTTTGC+TGG - chr1.1:14148535-14148554 None:intergenic 30.0%
! CATGATGAACATTTTGTTCA+TGG - chr1.1:14147202-14147221 None:intergenic 30.0%
! TGATCTGTTAGAATGGTTTT+AGG - chr1.1:14148103-14148122 None:intergenic 30.0%
!! GAAACTTTTCTGAAAGCAAT+GGG + chr1.1:14148067-14148086 MS.gene31811:CDS 30.0%
!! TCGTTTTAGTATGTAGTGTT+CGG - chr1.1:14148331-14148350 None:intergenic 30.0%
!! TGAAACTTTTCTGAAAGCAA+TGG + chr1.1:14148066-14148085 MS.gene31811:CDS 30.0%
!!! ATAGGCAAACAGTCATTTTT+GGG + chr1.1:14147996-14148015 MS.gene31811:CDS 30.0%
AAAAAGCCCATTTCATGAAG+CGG + chr1.1:14148415-14148434 MS.gene31811:CDS 35.0%
AAGATTCACATGCTTCAAAG+AGG + chr1.1:14147382-14147401 MS.gene31811:CDS 35.0%
AATGAAGTTTGAATCTGAGG+CGG + chr1.1:14147259-14147278 MS.gene31811:CDS 35.0%
AGATTCACATGCTTCAAAGA+GGG + chr1.1:14147383-14147402 MS.gene31811:CDS 35.0%
AGGAAGCAATCACTAAAGTA+TGG + chr1.1:14147749-14147768 MS.gene31811:CDS 35.0%
ATATATCTAAGCAAGCTGGT+GGG + chr1.1:14147672-14147691 MS.gene31811:CDS 35.0%
ATTGTACCGCTTCATGAAAT+GGG - chr1.1:14148424-14148443 None:intergenic 35.0%
CAATCAAGCCAATTAAGCAA+TGG + chr1.1:14148934-14148953 MS.gene31811:CDS 35.0%
CACCACTTACAAGACAAATA+AGG + chr1.1:14147934-14147953 MS.gene31811:CDS 35.0%
CATACTCATGTGGAATAAGA+AGG - chr1.1:14147553-14147572 None:intergenic 35.0%
GAAATAATCAAGGTTGGAGT+GGG + chr1.1:14148373-14148392 MS.gene31811:CDS 35.0%
GTTGAGTTCCATTGCTTAAT+TGG - chr1.1:14148945-14148964 None:intergenic 35.0%
TATATATCTAAGCAAGCTGG+TGG + chr1.1:14147671-14147690 MS.gene31811:CDS 35.0%
TGCATCTTGATCTGTTAGAA+TGG - chr1.1:14148110-14148129 None:intergenic 35.0%
TTGATCAATTTAAGCAGCTG+AGG - chr1.1:14148456-14148475 None:intergenic 35.0%
TTGTCCAAAAAATATCCGGA+TGG + chr1.1:14148555-14148574 MS.gene31811:CDS 35.0%
TTTGGTATTCGTCGAGAATA+TGG + chr1.1:14147323-14147342 MS.gene31811:CDS 35.0%
! CTTTAGTGATTGCTTCCTTT+TGG - chr1.1:14147747-14147766 None:intergenic 35.0%
! TCCAGATTGTGTCGATAAAT+GGG + chr1.1:14147166-14147185 MS.gene31811:CDS 35.0%
! TGTCGAAAATTTGAGACACA+TGG + chr1.1:14148249-14148268 MS.gene31811:intron 35.0%
! TTCCAGATTGTGTCGATAAA+TGG + chr1.1:14147165-14147184 MS.gene31811:CDS 35.0%
!! AAAGAAGGTATTGCCAATAG+TGG + chr1.1:14147224-14147243 MS.gene31811:CDS 35.0%
!! CATAGGCAAACAGTCATTTT+TGG + chr1.1:14147995-14148014 MS.gene31811:CDS 35.0%
!! CGTTTTAGTATGTAGTGTTC+GGG - chr1.1:14148330-14148349 None:intergenic 35.0%
!!! TAACGTCTTTTAGTCTTACG+TGG - chr1.1:14148687-14148706 None:intergenic 35.0%
!!! TAGGCAAACAGTCATTTTTG+GGG + chr1.1:14147997-14148016 MS.gene31811:CDS 35.0%
!!! TTCTCCATCCGGATATTTTT+TGG - chr1.1:14148562-14148581 None:intergenic 35.0%
AACAGATCAAGATGCAGCAA+TGG + chr1.1:14148114-14148133 MS.gene31811:CDS 40.0%
ACCCATTTATCGACACAATC+TGG - chr1.1:14147170-14147189 None:intergenic 40.0%
ACTAAAACGATGGACAAGAG+AGG + chr1.1:14148341-14148360 MS.gene31811:CDS 40.0%
ACTCATGTGGAATAAGAAGG+TGG - chr1.1:14147550-14147569 None:intergenic 40.0%
AGTCCAACAAATACACCCAA+AGG - chr1.1:14147968-14147987 None:intergenic 40.0%
ATTCCACTTGATTCTCCATC+CGG - chr1.1:14148573-14148592 None:intergenic 40.0%
ATTGTCTTGGGAGATGAATC+TGG + chr1.1:14147623-14147642 MS.gene31811:CDS 40.0%
CATTGTACCGCTTCATGAAA+TGG - chr1.1:14148425-14148444 None:intergenic 40.0%
GACAACAACAAAGACACTGT+TGG + chr1.1:14148630-14148649 MS.gene31811:CDS 40.0%
GCAAGGTTGGGAAATAATCA+AGG + chr1.1:14148363-14148382 MS.gene31811:CDS 40.0%
GCTGGACTCTTCATAAACTT+TGG - chr1.1:14148517-14148536 None:intergenic 40.0%
GGAAATAATCAAGGTTGGAG+TGG + chr1.1:14148372-14148391 MS.gene31811:CDS 40.0%
GGGAATGAAGTTTGAATCTG+AGG + chr1.1:14147256-14147275 MS.gene31811:CDS 40.0%
GGTTGGGAAATAATCAAGGT+TGG + chr1.1:14148367-14148386 MS.gene31811:CDS 40.0%
TATATCTAAGCAAGCTGGTG+GGG + chr1.1:14147673-14147692 MS.gene31811:CDS 40.0%
TCAAACTTCATTCCCAAGTG+AGG - chr1.1:14147251-14147270 None:intergenic 40.0%
! CATTTCATGGATTGTGCACT+TGG + chr1.1:14148167-14148186 MS.gene31811:intron 40.0%
! TCTAGAGCAGAAACAAGAAC+AGG + chr1.1:14147446-14147465 MS.gene31811:CDS 40.0%
! TGCCTTAGATATGTGTCGAT+GGG - chr1.1:14147591-14147610 None:intergenic 40.0%
!! ACTTTTCTGAAAGCAATGGG+TGG + chr1.1:14148070-14148089 MS.gene31811:CDS 40.0%
!! GCTTCATGAAATGGGCTTTT+TGG - chr1.1:14148416-14148435 None:intergenic 40.0%
ATAATCAAGGTTGGAGTGGG+AGG + chr1.1:14148376-14148395 MS.gene31811:CDS 45.0%
CGACCTTTGGGTGTATTTGT+TGG + chr1.1:14147962-14147981 MS.gene31811:CDS 45.0%
CTCCCATCGACACATATCTA+AGG + chr1.1:14147586-14147605 MS.gene31811:CDS 45.0%
GGATGGAGAATCAAGTGGAA+TGG + chr1.1:14148572-14148591 MS.gene31811:CDS 45.0%
GTGCCTTAGATATGTGTCGA+TGG - chr1.1:14147592-14147611 None:intergenic 45.0%
TATCCGGATGGAGAATCAAG+TGG + chr1.1:14148567-14148586 MS.gene31811:CDS 45.0%
TGACAAAAGACGTCAACCGA+CGG + chr1.1:14147418-14147437 MS.gene31811:CDS 45.0%
! GGCAAAAGGCATAAAGACGA+AGG + chr1.1:14148656-14148675 MS.gene31811:CDS 45.0%
AACAGGATGCACATCGCGTA+TGG + chr1.1:14147463-14147482 MS.gene31811:CDS 50.0%
AACGATGGACAAGAGAGGCA+AGG + chr1.1:14148346-14148365 MS.gene31811:CDS 50.0%
ATGGACAAGAGAGGCAAGGT+TGG + chr1.1:14148350-14148369 MS.gene31811:CDS 50.0%
CAACAAAGACACTGTTGGCG+AGG + chr1.1:14148635-14148654 MS.gene31811:CDS 50.0%
TCCCAAGTGAGGTCCACTAT+TGG - chr1.1:14147240-14147259 None:intergenic 50.0%
TGGACAAGAGAGGCAAGGTT+GGG + chr1.1:14148351-14148370 MS.gene31811:CDS 50.0%
!! GCCAATAGTGGACCTCACTT+GGG + chr1.1:14147236-14147255 MS.gene31811:CDS 50.0%
!! TGCCAATAGTGGACCTCACT+TGG + chr1.1:14147235-14147254 MS.gene31811:CDS 50.0%
CAAAAGACGTCAACCGACGG+CGG + chr1.1:14147421-14147440 MS.gene31811:CDS 55.0%
GACACTGTTGGCGAGGCAAA+AGG + chr1.1:14148642-14148661 MS.gene31811:CDS 55.0%
GCTGGTGGGGTAGAGATTGT+CGG + chr1.1:14147686-14147705 MS.gene31811:CDS 55.0%
! TCTGCTCTAGACTCCGCCGT+CGG - chr1.1:14147437-14147456 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 14147149 14149014 14147149 ID=MS.gene31811
chr1.1 mRNA 14147149 14149014 14147149 ID=MS.gene31811.t1;Parent=MS.gene31811
chr1.1 exon 14147149 14148179 14147149 ID=MS.gene31811.t1.exon1;Parent=MS.gene31811.t1
chr1.1 CDS 14147149 14148179 14147149 ID=cds.MS.gene31811.t1;Parent=MS.gene31811.t1
chr1.1 exon 14148284 14148830 14148284 ID=MS.gene31811.t1.exon2;Parent=MS.gene31811.t1
chr1.1 CDS 14148284 14148830 14148284 ID=cds.MS.gene31811.t1;Parent=MS.gene31811.t1
chr1.1 exon 14148907 14149014 14148907 ID=MS.gene31811.t1.exon3;Parent=MS.gene31811.t1
chr1.1 CDS 14148907 14149014 14148907 ID=cds.MS.gene31811.t1;Parent=MS.gene31811.t1
Gene Sequence

>MS.gene31811

ATGGATTCATCGTCAATTCCAGATTGTGTCGATAAATGGGTGAACAATATCCATGAACAAAATGTTCATCATGAGAAAGAAGGTATTGCCAATAGTGGACCTCACTTGGGAATGAAGTTTGAATCTGAGGCGGCGACATATGAATTTTATAATGATTACAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCATAATAGATGGAGTTTTGACTTCGAGAAGATTCACATGCTTCAAAGAGGGTACGCTAGTTGTTGACAAAAGACGTCAACCGACGGCGGAGTCTAGAGCAGAAACAAGAACAGGATGCACATCGCGTATGGTTATCTCACTTGATCGAAATATAGGGAAATATAAGGTTGTTGACTTTGAAGCTCAACATAACCACCTTCTTATTCCACATGAGTATGTTCATATGATTCGCTCCCATCGACACATATCTAAGGCACAAGCATCAAAAATTGTCTTGGGAGATGAATCTGGCTTAAGACCAAGAGATTTGCATCAATATATATCTAAGCAAGCTGGTGGGGTAGAGATTGTCGGTTTTACAAGCCAAGACCTTAAGAATTTGCTTAAAACCAAAAGGAAGCAATCACTAAAGTATGGTGAAGTGAGTGCCTTGATGACATATTTCAAACAAGAAAGTGAAAATCCCTCATTCTTTTATGATTTTCAAATGGATGTTGATGAGCTAATAACAAATATATTTTGGGCGGATGCACAGATGATTAATGATTATGGATACTTTGGTGATATCATCACTTTTGACACCACTTACAAGACAAATAAGGATTATCGACCTTTGGGTGTATTTGTTGGACTTAATAATCATAGGCAAACAGTCATTTTTGGGGCAACATTGTTATATGATGAAACAATTCCTTCTTTTCAGTGGTTATTTGAAACTTTTCTGAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACAGATCAAGATGCAGCAATGGCTAAAACTATTTCTTTAGTTATGCCAAAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAACGCTCTTAAGCATGTGAACCATCTATAGAAAAAGTTTCTTGTGATTGTCGAAAATTTGAGACACATGGCATCTTATGTAGTCATGCTTTGAAAGTTTTAGATGTCATGAACATTAAGTTAATTCCCGAACACTACATACTAAAACGATGGACAAGAGAGGCAAGGTTGGGAAATAATCAAGGTTGGAGTGGGAGGCATGTTGAATTAGACCAAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCAGCTGCTTAAATTGATCAATAGAGCTTCAGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAGTTAACGATATGTTGTCCAAAAAATATCCGGATGGAGAATCAAGTGGAATGGTTCATGTATCCATATCAATTGCGAATGATGAAGTCGACAACAACAAAGACACTGTTGGCGAGGCAAAAGGCATAAAGACGAAGGATTGTCCACGTAAGACTAAAAGACGTTATAAATCTTGGCTTGAAAAAGAAGCTAAAAAGGCAAAGATGCACTCAGAAAAAGAAGCTAAAAAGGCAAAGATGCACTCAGAAAAATTGAAAAAATCTCAAGATGGTTTAGTACAATTGTTACCGGTACGTATTTTTCTTTTATCAATTTGTTATATTTTGTTTTACCTATCATTTATTTAACTTTTCTTGTATTATGCAGCAATCAAGCAACACAATTCAAGCGACACAATCAAGCCAATTAAGCAATGGAACTCAACATCAAGATACAATTCAAGCAACACAATCAAGCCAAGTTAACTCATTGTAA
Protein sequence

>MS.gene31811.t1

MDSSSIPDCVDKWVNNIHEQNVHHEKEGIANSGPHLGMKFESEAATYEFYNDYSKRIGFGIRREYGNKSIIDGVLTSRRFTCFKEGTLVVDKRRQPTAESRAETRTGCTSRMVISLDRNIGKYKVVDFEAQHNHLLIPHEYVHMIRSHRHISKAQASKIVLGDESGLRPRDLHQYISKQAGGVEIVGFTSQDLKNLLKTKRKQSLKYGEVSALMTYFKQESENPSFFYDFQMDVDELITNIFWADAQMINDYGYFGDIITFDTTYKTNKDYRPLGVFVGLNNHRQTVIFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKTISLVMPKTFHGFHALKVLDVMNIKLIPEHYILKRWTREARLGNNQGWSGRHVELDQKAHFMKRYNELCPQLLKLINRASESHETYTFLSKVYEESSKIVNDMLSKKYPDGESSGMVHVSISIANDEVDNNKDTVGEAKGIKTKDCPRKTKRRYKSWLEKEAKKAKMHSEKEAKKAKMHSEKLKKSQDGLVQLLPQSSNTIQATQSSQLSNGTQHQDTIQATQSSQVNSL