Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31814.t1 | XP_013466371.1 | 92.6 | 296 | 18 | 1 | 1 | 296 | 1 | 292 | 1.70E-145 | 525.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31814.t1 | Q700C7 | 41.7 | 357 | 124 | 5 | 19 | 297 | 14 | 364 | 4.1e-55 | 216.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31814.t1 | A0A072VF69 | 92.6 | 296 | 18 | 1 | 1 | 296 | 1 | 292 | 1.2e-145 | 525.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31814.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31814.t1 | MTR_1g028470 | 92.568 | 296 | 18 | 1 | 1 | 296 | 1 | 292 | 0.0 | 533 |
MS.gene31814.t1 | MTR_3g090850 | 60.061 | 328 | 83 | 12 | 15 | 297 | 5 | 329 | 3.53e-113 | 330 |
MS.gene31814.t1 | MTR_2g022280 | 49.515 | 206 | 83 | 2 | 91 | 296 | 1 | 185 | 2.24e-61 | 193 |
MS.gene31814.t1 | MTR_0194s0050 | 39.224 | 232 | 126 | 2 | 63 | 294 | 160 | 376 | 2.21e-49 | 168 |
MS.gene31814.t1 | MTR_3g099620 | 33.884 | 242 | 146 | 3 | 54 | 294 | 79 | 307 | 8.60e-37 | 134 |
MS.gene31814.t1 | MTR_1g082480 | 34.007 | 297 | 140 | 10 | 30 | 295 | 55 | 326 | 4.60e-36 | 132 |
MS.gene31814.t1 | MTR_7g113830 | 36.245 | 229 | 122 | 5 | 66 | 292 | 93 | 299 | 2.65e-34 | 127 |
MS.gene31814.t1 | MTR_1g082480 | 34.307 | 274 | 137 | 8 | 30 | 279 | 55 | 309 | 2.38e-33 | 125 |
MS.gene31814.t1 | MTR_8g066770 | 35.678 | 199 | 102 | 4 | 90 | 285 | 113 | 288 | 1.22e-31 | 120 |
MS.gene31814.t1 | MTR_8g024210 | 36.364 | 209 | 103 | 3 | 89 | 296 | 179 | 358 | 3.18e-29 | 114 |
MS.gene31814.t1 | MTR_5g064950 | 30.483 | 269 | 147 | 6 | 27 | 277 | 23 | 269 | 1.42e-26 | 106 |
MS.gene31814.t1 | MTR_5g064950 | 30.855 | 269 | 146 | 7 | 27 | 277 | 23 | 269 | 3.46e-26 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31814.t1 | AT5G53210 | 46.218 | 357 | 108 | 8 | 19 | 297 | 14 | 364 | 3.88e-82 | 252 |
MS.gene31814.t1 | AT5G53210 | 43.027 | 337 | 108 | 8 | 19 | 277 | 14 | 344 | 2.55e-66 | 211 |
MS.gene31814.t1 | AT3G06120 | 46.890 | 209 | 91 | 4 | 91 | 296 | 1 | 192 | 3.17e-56 | 180 |
MS.gene31814.t1 | AT3G24140 | 40.611 | 229 | 125 | 2 | 69 | 297 | 177 | 394 | 1.12e-48 | 167 |
MS.gene31814.t1 | AT3G24140 | 40.611 | 229 | 125 | 2 | 69 | 297 | 177 | 394 | 1.29e-48 | 167 |
MS.gene31814.t1 | AT1G72210 | 31.925 | 213 | 109 | 4 | 90 | 294 | 124 | 308 | 1.69e-29 | 114 |
MS.gene31814.t1 | AT1G72210 | 32.821 | 195 | 96 | 3 | 90 | 277 | 124 | 290 | 5.93e-29 | 112 |
MS.gene31814.t1 | AT4G01460 | 35.885 | 209 | 112 | 3 | 89 | 296 | 113 | 300 | 2.24e-28 | 111 |
MS.gene31814.t1 | AT4G01460 | 35.885 | 209 | 112 | 3 | 89 | 296 | 113 | 300 | 2.24e-28 | 111 |
MS.gene31814.t1 | AT1G22490 | 33.816 | 207 | 112 | 4 | 90 | 295 | 114 | 296 | 6.88e-27 | 107 |
MS.gene31814.t1 | AT1G22490 | 35.106 | 188 | 98 | 3 | 90 | 277 | 114 | 277 | 6.78e-26 | 105 |
MS.gene31814.t1 | AT2G46810 | 33.962 | 212 | 101 | 4 | 90 | 296 | 120 | 297 | 5.68e-25 | 102 |
MS.gene31814.t1 | AT2G46810 | 33.962 | 212 | 101 | 4 | 90 | 296 | 180 | 357 | 1.50e-24 | 102 |
MS.gene31814.t1 | AT2G46810 | 33.962 | 212 | 101 | 4 | 90 | 296 | 192 | 369 | 1.99e-24 | 101 |
MS.gene31814.t1 | AT5G65320 | 33.333 | 219 | 120 | 5 | 78 | 294 | 93 | 287 | 5.65e-24 | 99.4 |
MS.gene31814.t1 | AT3G61950 | 32.057 | 209 | 108 | 4 | 90 | 296 | 126 | 302 | 4.08e-22 | 94.4 |
MS.gene31814.t1 | AT3G61950 | 32.057 | 209 | 108 | 4 | 90 | 296 | 177 | 353 | 9.50e-22 | 94.0 |
MS.gene31814.t1 | AT5G65320 | 33.500 | 200 | 109 | 4 | 78 | 277 | 93 | 268 | 3.51e-21 | 91.3 |
MS.gene31814.t1 | AT2G46810 | 33.333 | 192 | 90 | 3 | 90 | 277 | 120 | 277 | 3.68e-21 | 92.0 |
MS.gene31814.t1 | AT3G61950 | 32.571 | 175 | 86 | 2 | 90 | 264 | 126 | 268 | 3.26e-19 | 86.3 |
MS.gene31814.t1 | AT3G61950 | 32.571 | 175 | 86 | 2 | 90 | 264 | 177 | 319 | 6.08e-19 | 86.3 |
MS.gene31814.t1 | AT5G46690 | 33.333 | 198 | 130 | 1 | 90 | 285 | 87 | 284 | 7.33e-19 | 85.5 |
MS.gene31814.t1 | AT5G46690 | 56.164 | 73 | 30 | 1 | 90 | 160 | 87 | 159 | 2.17e-18 | 83.6 |
Find 37 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTTTGTTTCTTGGATTCT+AGG | 0.149526 | 1.1:+14231690 | None:intergenic |
GCTATACTTGTTCACTATTA+AGG | 0.194492 | 1.1:-14231318 | MS.gene31814:intron |
TATGGAGTTCTTGGACTAAT+TGG | 0.243592 | 1.1:+14231608 | None:intergenic |
AACCGTTTCGTCGCGAATTC+CGG | 0.254891 | 1.1:-14231426 | MS.gene31814:CDS |
CTCGTTGATGTTATCATTGA+TGG | 0.262537 | 1.1:+14231520 | None:intergenic |
CTAATTGGTAAGATTATTCT+AGG | 0.295024 | 1.1:+14231623 | None:intergenic |
AGCCATTGGTATGGAGTTCT+TGG | 0.318969 | 1.1:+14231599 | None:intergenic |
AACAAGGTGTCATGATCTAT+TGG | 0.344330 | 1.1:+14232395 | None:intergenic |
ATATTCAATGAAACTGAGTT+TGG | 0.348570 | 1.1:-14232362 | MS.gene31814:CDS |
ACCGTTTCGTCGCGAATTCC+GGG | 0.356833 | 1.1:-14231425 | MS.gene31814:CDS |
ATGGAAGAAGCTGAAGAAGT+TGG | 0.426375 | 1.1:+14231539 | None:intergenic |
TTCGTCGCGAATTCCGGGGC+AGG | 0.430597 | 1.1:-14231420 | MS.gene31814:CDS |
GGACTTGGTGGTAAAGGTCT+TGG | 0.442966 | 1.1:+14231644 | None:intergenic |
GGTAAGATTATTCTAGGACT+TGG | 0.462482 | 1.1:+14231629 | None:intergenic |
CACCACATTGTTGCAGCCAT+TGG | 0.463771 | 1.1:+14231585 | None:intergenic |
ATTCTAGGACTTGGTGGTAA+AGG | 0.464684 | 1.1:+14231638 | None:intergenic |
CATTGTTGCAGCCATTGGTA+TGG | 0.478254 | 1.1:+14231590 | None:intergenic |
CCCCGGAATTCGCGACGAAA+CGG | 0.496648 | 1.1:+14231424 | None:intergenic |
GTACAAAATGGAAACTCAAA+AGG | 0.507268 | 1.1:-14232420 | None:intergenic |
CAAGTTCTTCAGCACTGAGT+TGG | 0.510419 | 1.1:+14229898 | None:intergenic |
GTCTTCGCTTGCTGATGTTG+AGG | 0.530715 | 1.1:-14231480 | MS.gene31814:CDS |
AAGATTATTCTAGGACTTGG+TGG | 0.543325 | 1.1:+14231632 | None:intergenic |
GATTGTGACTACAATTATAG+AGG | 0.544599 | 1.1:-14232192 | MS.gene31814:CDS |
TGAAACTGAGTTTGGTTCAG+AGG | 0.550414 | 1.1:-14232354 | MS.gene31814:CDS |
ACATCGAATGTCGCATATCA+CGG | 0.587471 | 1.1:-14232150 | MS.gene31814:CDS |
GATCAAGCATCAATAGTTGA+AGG | 0.590664 | 1.1:-14231755 | MS.gene31814:CDS |
AATAGTGAACAAGTATAGCA+TGG | 0.592880 | 1.1:+14231322 | None:intergenic |
ATCTCAGTTTCAGAATCTTG+AGG | 0.599342 | 1.1:+14232248 | None:intergenic |
GAAGCTGAAGAAGTTGGAGA+TGG | 0.605113 | 1.1:+14231545 | None:intergenic |
GTCCAAGAACTCCATACCAA+TGG | 0.611914 | 1.1:-14231601 | MS.gene31814:CDS |
ATTATTCTAAGAGCCTGCCC+CGG | 0.625886 | 1.1:+14231407 | None:intergenic |
CCGTTTCGTCGCGAATTCCG+GGG | 0.649169 | 1.1:-14231424 | MS.gene31814:CDS |
ATAGAGGAACAAAACAACGA+TGG | 0.666577 | 1.1:-14232176 | MS.gene31814:CDS |
GAATATATCAGATAATAACA+AGG | 0.703731 | 1.1:+14232379 | None:intergenic |
GTGATATGCGACATTCGATG+TGG | 0.706196 | 1.1:+14232152 | None:intergenic |
CAATGGCTGCAACAATGTGG+TGG | 0.729603 | 1.1:-14231584 | MS.gene31814:CDS |
TACCAATGGCTGCAACAATG+TGG | 0.747770 | 1.1:-14231587 | MS.gene31814:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATATAATTAATTATTAA+TGG | + | chr1.1:14232329-14232348 | None:intergenic | 0.0% |
!! | AAAAAGAAAACTTATATTTA+AGG | - | chr1.1:14231276-14231295 | MS.gene31814:intron | 10.0% |
!! | CATTGTAAAAAAATAAAAAT+TGG | - | chr1.1:14231802-14231821 | MS.gene31814:intron | 10.0% |
!! | ACTATAATTTACAACTAAAT+TGG | - | chr1.1:14231018-14231037 | MS.gene31814:intron | 15.0% |
!! | TAAGATAGACAAATTAAAAA+AGG | - | chr1.1:14231056-14231075 | MS.gene31814:intron | 15.0% |
!! | TAATTATTATACTATACAGT+AGG | + | chr1.1:14232097-14232116 | None:intergenic | 15.0% |
!!! | GTTATTTATGTTTTCAATTT+TGG | - | chr1.1:14232302-14232321 | MS.gene31814:CDS | 15.0% |
!!! | TTATTGTTTTTTCGAAATAT+AGG | + | chr1.1:14231359-14231378 | None:intergenic | 15.0% |
!!! | TTTTAAATTCAATTAGTTAG+AGG | - | chr1.1:14230293-14230312 | MS.gene31814:intron | 15.0% |
!! | AAAATTTCTCTTATGTAGAT+TGG | - | chr1.1:14232352-14232371 | MS.gene31814:CDS | 20.0% |
!! | AGAATCAAAACTATTAAAGA+GGG | + | chr1.1:14231751-14231770 | None:intergenic | 20.0% |
!! | GAATATATCAGATAATAACA+AGG | + | chr1.1:14229906-14229925 | None:intergenic | 20.0% |
!! | TCAAATAATGGTTATGAAAA+GGG | - | chr1.1:14231313-14231332 | MS.gene31814:intron | 20.0% |
!! | TTCAAATAATGGTTATGAAA+AGG | - | chr1.1:14231312-14231331 | MS.gene31814:intron | 20.0% |
!!! | ACTTAATCTTTGTTTATGTT+TGG | - | chr1.1:14230989-14231008 | MS.gene31814:intron | 20.0% |
!!! | AGCTTTTTTCTTTCAAATAA+TGG | - | chr1.1:14231301-14231320 | MS.gene31814:intron | 20.0% |
!!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1.1:14229963-14229982 | None:intergenic | 20.0% |
!!! | TTTAATAGTTTTGATTCTCT+TGG | - | chr1.1:14231753-14231772 | MS.gene31814:CDS | 20.0% |
!!! | TTTAATGCTTTAAATTATGG+TGG | - | chr1.1:14231452-14231471 | MS.gene31814:CDS | 20.0% |
! | AATGTCGACAATTAAAGTTA+TGG | + | chr1.1:14231502-14231521 | None:intergenic | 25.0% |
! | ATATTCAATGAAACTGAGTT+TGG | - | chr1.1:14229920-14229939 | MS.gene31814:intron | 25.0% |
! | ATTACTCTTCTATATGGTTT+AGG | - | chr1.1:14230502-14230521 | MS.gene31814:intron | 25.0% |
! | ATTGAATAGTGTGGTAATAA+TGG | - | chr1.1:14231845-14231864 | MS.gene31814:intron | 25.0% |
! | CAACTAATTACTCTTCTATA+TGG | - | chr1.1:14230496-14230515 | MS.gene31814:intron | 25.0% |
! | CATTATTACCATTATTACCA+GGG | - | chr1.1:14232053-14232072 | MS.gene31814:intron | 25.0% |
! | CTAATTGGTAAGATTATTCT+AGG | + | chr1.1:14230662-14230681 | None:intergenic | 25.0% |
! | GAGAATCAAAACTATTAAAG+AGG | + | chr1.1:14231752-14231771 | None:intergenic | 25.0% |
! | GTAATAATGGTAAATTCTTC+CGG | + | chr1.1:14232042-14232061 | None:intergenic | 25.0% |
! | TGGTGAAAAAAATCAATGTA+TGG | - | chr1.1:14232215-14232234 | MS.gene31814:CDS | 25.0% |
! | TGTATATCATAACATCATTC+TGG | - | chr1.1:14232179-14232198 | MS.gene31814:CDS | 25.0% |
! | TGTTGAACAACATATAATTG+AGG | + | chr1.1:14231664-14231683 | None:intergenic | 25.0% |
! | TTACTCTTCTATATGGTTTA+GGG | - | chr1.1:14230503-14230522 | MS.gene31814:intron | 25.0% |
!! | AAAAATTGGTAACTTTGATG+AGG | - | chr1.1:14231816-14231835 | MS.gene31814:intron | 25.0% |
!! | AGTACAATGTGATGATTTTT+AGG | + | chr1.1:14231570-14231589 | None:intergenic | 25.0% |
!! | GGGTTTAATGCTTTAAATTA+TGG | - | chr1.1:14231449-14231468 | MS.gene31814:CDS | 25.0% |
!! | TTTTTGCTTATAAATGTGAC+CGG | - | chr1.1:14232020-14232039 | MS.gene31814:intron | 25.0% |
!! | TTTTTGCTTATAAATGTGAC+CGG | + | chr1.1:14232039-14232020 | None:intergenic | 25.0% |
!!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1.1:14230006-14230025 | None:intergenic | 25.0% |
!!! | AATTTTTTGCTAAAAGCCTA+CGG | - | chr1.1:14231870-14231889 | MS.gene31814:intron | 25.0% |
!!! | GTAAACTTTTCTTTGTTTCT+TGG | + | chr1.1:14230603-14230622 | None:intergenic | 25.0% |
AATAGTGAACAAGTATAGCA+TGG | + | chr1.1:14230963-14230982 | None:intergenic | 30.0% | |
AGAATTTACCCTGGTAATAA+TGG | + | chr1.1:14232064-14232083 | None:intergenic | 30.0% | |
AGGATGAATATTGAATAGTG+TGG | - | chr1.1:14231836-14231855 | MS.gene31814:intron | 30.0% | |
ATCTAACCTATAAATGTGAC+TGG | - | chr1.1:14231963-14231982 | MS.gene31814:intron | 30.0% | |
ATGTATCCAGTCACATTTAT+AGG | + | chr1.1:14231972-14231991 | None:intergenic | 30.0% | |
ATTCTGGCATTGTATGTATT+TGG | - | chr1.1:14232195-14232214 | MS.gene31814:CDS | 30.0% | |
CAGAAACCAAACCAAATTTA+TGG | - | chr1.1:14230327-14230346 | MS.gene31814:intron | 30.0% | |
CCATTATTACCATTATTACC+AGG | - | chr1.1:14232052-14232071 | MS.gene31814:intron | 30.0% | |
CCTGGTAATAATGGTAATAA+TGG | + | chr1.1:14232055-14232074 | None:intergenic | 30.0% | |
GATTGTGACTACAATTATAG+AGG | - | chr1.1:14230090-14230109 | MS.gene31814:intron | 30.0% | |
GCTATACTTGTTCACTATTA+AGG | - | chr1.1:14230964-14230983 | MS.gene31814:intron | 30.0% | |
TAAACCCTAGTTCAAGTATA+GGG | + | chr1.1:14231436-14231455 | None:intergenic | 30.0% | |
TCATGCATTTGATGAAAATG+AGG | + | chr1.1:14231399-14231418 | None:intergenic | 30.0% | |
TTAAACCCTAGTTCAAGTAT+AGG | + | chr1.1:14231437-14231456 | None:intergenic | 30.0% | |
! | ACATCTTTCTGAAAATCCTA+AGG | - | chr1.1:14231619-14231638 | MS.gene31814:CDS | 30.0% |
! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1.1:14230217-14230236 | None:intergenic | 30.0% |
! | TTAGGATTTTCAGAAAGATG+TGG | + | chr1.1:14231620-14231639 | None:intergenic | 30.0% |
! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1.1:14230595-14230614 | None:intergenic | 30.0% |
! | TTTTAGCAAAGAATTTACCC+TGG | + | chr1.1:14232073-14232092 | None:intergenic | 30.0% |
!! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1.1:14229992-14230011 | None:intergenic | 30.0% |
!! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1.1:14229993-14230012 | None:intergenic | 30.0% |
AAAGAGGGAAGTAGCATAAT+GGG | + | chr1.1:14231736-14231755 | None:intergenic | 35.0% | |
AATTGCAATACCACGTTTGT+TGG | - | chr1.1:14231531-14231550 | MS.gene31814:CDS | 35.0% | |
ACCAAACCAAATTTATGGTC+TGG | - | chr1.1:14230332-14230351 | MS.gene31814:intron | 35.0% | |
ACCAGACCATAAATTTGGTT+TGG | + | chr1.1:14230336-14230355 | None:intergenic | 35.0% | |
ATAGAGGAACAAAACAACGA+TGG | - | chr1.1:14230106-14230125 | MS.gene31814:intron | 35.0% | |
ATCTCAGTTTCAGAATCTTG+AGG | + | chr1.1:14230037-14230056 | None:intergenic | 35.0% | |
ATTGCAATACCACGTTTGTT+GGG | - | chr1.1:14231532-14231551 | MS.gene31814:CDS | 35.0% | |
ATTGCATCAACCGTAAACTA+CGG | + | chr1.1:14230389-14230408 | None:intergenic | 35.0% | |
CTCGTTGATGTTATCATTGA+TGG | + | chr1.1:14230765-14230784 | None:intergenic | 35.0% | |
GATCAAGCATCAATAGTTGA+AGG | - | chr1.1:14230527-14230546 | MS.gene31814:intron | 35.0% | |
GATGTTATGATATACATCCC+TGG | + | chr1.1:14232175-14232194 | None:intergenic | 35.0% | |
GCGCAATTACAAAACTTGAT+TGG | - | chr1.1:14231591-14231610 | MS.gene31814:CDS | 35.0% | |
TAAACTACGGTTCGTAGTTA+GGG | + | chr1.1:14230376-14230395 | None:intergenic | 35.0% | |
TAAAGAGGGAAGTAGCATAA+TGG | + | chr1.1:14231737-14231756 | None:intergenic | 35.0% | |
TAACTACGAACCGTAGTTTA+CGG | - | chr1.1:14230376-14230395 | MS.gene31814:intron | 35.0% | |
TATGGAGTTCTTGGACTAAT+TGG | + | chr1.1:14230677-14230696 | None:intergenic | 35.0% | |
! | AACAAGGTGTCATGATCTAT+TGG | + | chr1.1:14229890-14229909 | None:intergenic | 35.0% |
! | AGAGGATCTCTTTTCCATTT+TGG | - | chr1.1:14229946-14229965 | MS.gene31814:intron | 35.0% |
! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1.1:14230815-14230834 | MS.gene31814:intron | 35.0% |
! | TCTGAAAATCCTAAGGCATT+AGG | - | chr1.1:14231626-14231645 | MS.gene31814:CDS | 35.0% |
!! | AAGATTATTCTAGGACTTGG+TGG | + | chr1.1:14230653-14230672 | None:intergenic | 35.0% |
!! | GATGATTTTTAGGCTTCCTT+CGG | + | chr1.1:14231560-14231579 | None:intergenic | 35.0% |
!! | GGTAAGATTATTCTAGGACT+TGG | + | chr1.1:14230656-14230675 | None:intergenic | 35.0% |
!!! | TTTTGGTCATTGATAATGGG+AGG | + | chr1.1:14229989-14230008 | None:intergenic | 35.0% |
AAACTACGGTTCGTAGTTAG+GGG | + | chr1.1:14230375-14230394 | None:intergenic | 40.0% | |
AAGAGGGAAGTAGCATAATG+GGG | + | chr1.1:14231735-14231754 | None:intergenic | 40.0% | |
ACATCGAATGTCGCATATCA+CGG | - | chr1.1:14230132-14230151 | MS.gene31814:intron | 40.0% | |
ACTGGACCAGACCATAAATT+TGG | + | chr1.1:14230341-14230360 | None:intergenic | 40.0% | |
ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1.1:14230746-14230765 | None:intergenic | 40.0% | |
CAAAACATGACAGCTACTAG+AGG | + | chr1.1:14231781-14231800 | None:intergenic | 40.0% | |
GTAAACTACGGTTCGTAGTT+AGG | + | chr1.1:14230377-14230396 | None:intergenic | 40.0% | |
TCCACCCTATACTTGAACTA+GGG | - | chr1.1:14231429-14231448 | MS.gene31814:CDS | 40.0% | |
TGCTTATAAATGTGACCGGA+AGG | + | chr1.1:14232043-14232024 | None:intergenic | 40.0% | |
TTCCACCCTATACTTGAACT+AGG | - | chr1.1:14231428-14231447 | MS.gene31814:CDS | 40.0% | |
! | CCTAAGGCATTAGGTGTAAT+GGG | - | chr1.1:14231635-14231654 | MS.gene31814:CDS | 40.0% |
! | TATGGTGGTGATCACGAAAA+TGG | - | chr1.1:14231467-14231486 | MS.gene31814:CDS | 40.0% |
! | TCCTAAGGCATTAGGTGTAA+TGG | - | chr1.1:14231634-14231653 | MS.gene31814:CDS | 40.0% |
! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1.1:14229928-14229947 | MS.gene31814:intron | 40.0% |
!! | ATTCTAGGACTTGGTGGTAA+AGG | + | chr1.1:14230647-14230666 | None:intergenic | 40.0% |
!! | TGATCATTTCTGAGACACCA+GGG | - | chr1.1:14232155-14232174 | MS.gene31814:CDS | 40.0% |
ACCCTAGTTCAAGTATAGGG+TGG | + | chr1.1:14231433-14231452 | None:intergenic | 45.0% | |
AGCCATTGGTATGGAGTTCT+TGG | + | chr1.1:14230686-14230705 | None:intergenic | 45.0% | |
CATTGTTGCAGCCATTGGTA+TGG | + | chr1.1:14230695-14230714 | None:intergenic | 45.0% | |
CCCATTACACCTAATGCCTT+AGG | + | chr1.1:14231638-14231657 | None:intergenic | 45.0% | |
GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1.1:14230740-14230759 | None:intergenic | 45.0% | |
GTCCAAGAACTCCATACCAA+TGG | - | chr1.1:14230681-14230700 | MS.gene31814:intron | 45.0% | |
GTGATATGCGACATTCGATG+TGG | + | chr1.1:14230133-14230152 | None:intergenic | 45.0% | |
TACCAATGGCTGCAACAATG+TGG | - | chr1.1:14230695-14230714 | MS.gene31814:intron | 45.0% | |
! | ATTATTCTAAGAGCCTGCCC+CGG | + | chr1.1:14230878-14230897 | None:intergenic | 45.0% |
! | CAAGTTCTTCAGCACTGAGT+TGG | + | chr1.1:14232387-14232406 | None:intergenic | 45.0% |
!! | AAGGAGTACTTCACTACCGT+AGG | + | chr1.1:14231889-14231908 | None:intergenic | 45.0% |
!! | CTGATCATTTCTGAGACACC+AGG | - | chr1.1:14232154-14232173 | MS.gene31814:CDS | 45.0% |
!!! | TAATTTTAATCTTAATAAAA+AGG | + | chr1.1:14230433-14230452 | None:intergenic | 5.0% |
AACCGTTTCGTCGCGAATTC+CGG | - | chr1.1:14230856-14230875 | MS.gene31814:intron | 50.0% | |
CAATGGCTGCAACAATGTGG+TGG | - | chr1.1:14230698-14230717 | MS.gene31814:intron | 50.0% | |
CACCACATTGTTGCAGCCAT+TGG | + | chr1.1:14230700-14230719 | None:intergenic | 50.0% | |
! | CGGTAGTGAAGTACTCCTTC+CGG | - | chr1.1:14231890-14231909 | MS.gene31814:intron | 50.0% |
! | GTCTTCGCTTGCTGATGTTG+AGG | - | chr1.1:14230802-14230821 | MS.gene31814:intron | 50.0% |
! | TCGTAGTTAGGGGTGTGCAA+AGG | + | chr1.1:14230365-14230384 | None:intergenic | 50.0% |
! | TTAGGGGTGTGCAAAGGAAC+TGG | + | chr1.1:14230359-14230378 | None:intergenic | 50.0% |
!! | GGACTTGGTGGTAAAGGTCT+TGG | + | chr1.1:14230641-14230660 | None:intergenic | 50.0% |
ACCGTTTCGTCGCGAATTCC+GGG | - | chr1.1:14230857-14230876 | MS.gene31814:intron | 55.0% | |
CCTTCGGAACCCAACAAACG+TGG | + | chr1.1:14231544-14231563 | None:intergenic | 55.0% | |
! | CCACGTTTGTTGGGTTCCGA+AGG | - | chr1.1:14231541-14231560 | MS.gene31814:CDS | 55.0% |
CCCCGGAATTCGCGACGAAA+CGG | + | chr1.1:14230861-14230880 | None:intergenic | 60.0% | |
CCGTTTCGTCGCGAATTCCG+GGG | - | chr1.1:14230858-14230877 | MS.gene31814:intron | 60.0% | |
TTCGTCGCGAATTCCGGGGC+AGG | - | chr1.1:14230862-14230881 | MS.gene31814:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 14229869 | 14232435 | 14229869 | ID=MS.gene31814 |
chr1.1 | mRNA | 14229869 | 14232435 | 14229869 | ID=MS.gene31814.t1;Parent=MS.gene31814 |
chr1.1 | exon | 14232070 | 14232435 | 14232070 | ID=MS.gene31814.t1.exon1;Parent=MS.gene31814.t1 |
chr1.1 | CDS | 14232070 | 14232435 | 14232070 | ID=cds.MS.gene31814.t1;Parent=MS.gene31814.t1 |
chr1.1 | exon | 14231319 | 14231780 | 14231319 | ID=MS.gene31814.t1.exon2;Parent=MS.gene31814.t1 |
chr1.1 | CDS | 14231319 | 14231780 | 14231319 | ID=cds.MS.gene31814.t1;Parent=MS.gene31814.t1 |
chr1.1 | exon | 14229869 | 14229934 | 14229869 | ID=MS.gene31814.t1.exon3;Parent=MS.gene31814.t1 |
chr1.1 | CDS | 14229869 | 14229934 | 14229869 | ID=cds.MS.gene31814.t1;Parent=MS.gene31814.t1 |
Gene Sequence |
Protein sequence |