Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31838.t1 | XP_013466407.1 | 67.4 | 172 | 24 | 2 | 1 | 140 | 1 | 172 | 2.00E-48 | 201.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31838.t1 | O23310 | 59.3 | 91 | 37 | 0 | 27 | 117 | 19 | 109 | 6.7e-24 | 111.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31838.t1 | A0A072VGA7 | 67.4 | 172 | 24 | 2 | 1 | 140 | 1 | 172 | 1.5e-48 | 201.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31838.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31838.t1 | MTR_1g029070 | 66.456 | 158 | 21 | 2 | 1 | 126 | 1 | 158 | 1.21e-65 | 197 |
MS.gene31838.t1 | MTR_1g072790 | 48.333 | 120 | 58 | 1 | 20 | 139 | 20 | 135 | 1.20e-34 | 119 |
MS.gene31838.t1 | MTR_8g091720 | 54.286 | 105 | 38 | 1 | 23 | 117 | 12 | 116 | 1.40e-34 | 119 |
MS.gene31838.t1 | MTR_7g061270 | 48.182 | 110 | 55 | 1 | 28 | 137 | 25 | 132 | 2.28e-33 | 115 |
MS.gene31838.t1 | MTR_7g100650 | 48.182 | 110 | 55 | 1 | 28 | 137 | 25 | 132 | 3.02e-33 | 115 |
MS.gene31838.t1 | MTR_1g039040 | 53.333 | 90 | 42 | 0 | 28 | 117 | 5 | 94 | 1.13e-32 | 114 |
MS.gene31838.t1 | MTR_5g095740 | 55.914 | 93 | 40 | 1 | 25 | 117 | 20 | 111 | 1.46e-32 | 114 |
MS.gene31838.t1 | MTR_2g026710 | 55.556 | 90 | 40 | 0 | 28 | 117 | 16 | 105 | 4.20e-32 | 112 |
MS.gene31838.t1 | MTR_3g058980 | 55.914 | 93 | 40 | 1 | 25 | 117 | 24 | 115 | 5.47e-32 | 112 |
MS.gene31838.t1 | MTR_4g133938 | 54.255 | 94 | 43 | 0 | 24 | 117 | 14 | 107 | 4.91e-30 | 105 |
MS.gene31838.t1 | MTR_4g133952 | 44.954 | 109 | 54 | 1 | 9 | 117 | 44 | 146 | 1.29e-29 | 107 |
MS.gene31838.t1 | MTR_8g093920 | 52.941 | 85 | 40 | 0 | 34 | 118 | 45 | 129 | 7.12e-29 | 105 |
MS.gene31838.t1 | MTR_1g088860 | 52.381 | 84 | 40 | 0 | 34 | 117 | 41 | 124 | 3.70e-28 | 102 |
MS.gene31838.t1 | MTR_4g119500 | 42.105 | 114 | 56 | 1 | 4 | 117 | 7 | 110 | 6.62e-28 | 100 |
MS.gene31838.t1 | MTR_0392s0020 | 48.810 | 84 | 43 | 0 | 34 | 117 | 23 | 106 | 7.44e-27 | 97.8 |
MS.gene31838.t1 | MTR_1g028480 | 53.488 | 86 | 31 | 1 | 60 | 136 | 20 | 105 | 1.32e-25 | 94.0 |
MS.gene31838.t1 | MTR_1g029100 | 45.000 | 80 | 44 | 0 | 30 | 109 | 3 | 82 | 2.73e-23 | 87.4 |
MS.gene31838.t1 | MTR_1g083070 | 41.667 | 84 | 49 | 0 | 34 | 117 | 9 | 92 | 2.28e-21 | 83.6 |
MS.gene31838.t1 | MTR_5g095900 | 35.632 | 87 | 56 | 0 | 34 | 120 | 21 | 107 | 2.98e-14 | 66.6 |
MS.gene31838.t1 | MTR_2g056000 | 24.194 | 124 | 93 | 1 | 11 | 134 | 24 | 146 | 4.67e-12 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31838.t1 | AT4G14540 | 59.341 | 91 | 37 | 0 | 27 | 117 | 19 | 109 | 4.07e-35 | 119 |
MS.gene31838.t1 | AT2G38880 | 50.000 | 114 | 53 | 2 | 22 | 135 | 14 | 123 | 6.13e-34 | 115 |
MS.gene31838.t1 | AT2G38880 | 50.000 | 114 | 55 | 2 | 22 | 135 | 14 | 125 | 6.52e-34 | 115 |
MS.gene31838.t1 | AT2G38880 | 50.000 | 114 | 55 | 2 | 22 | 135 | 14 | 125 | 7.56e-34 | 115 |
MS.gene31838.t1 | AT2G38880 | 50.000 | 114 | 55 | 2 | 22 | 135 | 14 | 125 | 7.56e-34 | 115 |
MS.gene31838.t1 | AT2G38880 | 50.000 | 114 | 55 | 2 | 22 | 135 | 14 | 125 | 7.56e-34 | 115 |
MS.gene31838.t1 | AT3G53340 | 46.903 | 113 | 60 | 0 | 27 | 139 | 27 | 139 | 2.62e-33 | 115 |
MS.gene31838.t1 | AT3G53340 | 46.903 | 113 | 60 | 0 | 27 | 139 | 27 | 139 | 2.62e-33 | 115 |
MS.gene31838.t1 | AT5G47640 | 56.383 | 94 | 40 | 1 | 25 | 118 | 24 | 116 | 5.52e-33 | 115 |
MS.gene31838.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 24 | 117 | 16 | 109 | 4.81e-32 | 110 |
MS.gene31838.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 27 | 139 | 28 | 146 | 9.05e-32 | 111 |
MS.gene31838.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 27 | 139 | 28 | 146 | 9.05e-32 | 111 |
MS.gene31838.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 27 | 139 | 28 | 146 | 9.05e-32 | 111 |
MS.gene31838.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 24 | 117 | 16 | 109 | 1.26e-31 | 110 |
MS.gene31838.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 24 | 117 | 16 | 109 | 1.26e-31 | 110 |
MS.gene31838.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 27 | 117 | 27 | 117 | 1.40e-31 | 109 |
MS.gene31838.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 24 | 117 | 16 | 109 | 3.39e-31 | 109 |
MS.gene31838.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 24 | 117 | 16 | 109 | 3.39e-31 | 109 |
MS.gene31838.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 24 | 117 | 16 | 109 | 3.39e-31 | 109 |
MS.gene31838.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 27 | 117 | 27 | 117 | 1.48e-30 | 107 |
MS.gene31838.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 27 | 117 | 27 | 117 | 1.48e-30 | 107 |
MS.gene31838.t1 | AT2G13570 | 44.444 | 117 | 65 | 0 | 2 | 118 | 9 | 125 | 4.41e-30 | 108 |
MS.gene31838.t1 | AT1G21970 | 50.000 | 90 | 45 | 0 | 28 | 117 | 58 | 147 | 8.05e-30 | 108 |
MS.gene31838.t1 | AT5G47670 | 49.451 | 91 | 46 | 0 | 27 | 117 | 27 | 117 | 9.83e-30 | 107 |
MS.gene31838.t1 | AT5G47670 | 49.451 | 91 | 46 | 0 | 27 | 117 | 56 | 146 | 1.83e-29 | 107 |
MS.gene31838.t1 | AT5G47670 | 49.451 | 91 | 46 | 0 | 27 | 117 | 56 | 146 | 1.83e-29 | 107 |
MS.gene31838.t1 | AT2G47810 | 48.810 | 84 | 43 | 0 | 34 | 117 | 56 | 139 | 1.15e-26 | 98.2 |
MS.gene31838.t1 | AT1G09030 | 44.944 | 89 | 48 | 1 | 30 | 117 | 3 | 91 | 7.31e-24 | 90.1 |
MS.gene31838.t1 | AT5G08190 | 28.205 | 117 | 80 | 2 | 20 | 136 | 3 | 115 | 3.37e-12 | 60.8 |
MS.gene31838.t1 | AT5G08190 | 29.412 | 102 | 68 | 2 | 20 | 121 | 3 | 100 | 2.02e-11 | 58.5 |
Find 38 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTATCGCAACCATGCTTA+TGG | 0.229358 | 1.1:+14587813 | MS.gene31838:CDS |
GATTCTTGTCAAATTTCTAA+TGG | 0.267704 | 1.1:-14587574 | None:intergenic |
TTAGTGGTGAAGATTTAATA+TGG | 0.318108 | 1.1:+14587733 | MS.gene31838:CDS |
AAGCATGGTTGCGATAGTTT+TGG | 0.320197 | 1.1:-14587809 | None:intergenic |
ATATGGGCCATGGGTAGGTT+AGG | 0.325129 | 1.1:+14587750 | MS.gene31838:CDS |
TTTGGATTTAGTCCCTTTGC+AGG | 0.325363 | 1.1:+14587515 | MS.gene31838:intron |
CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1.1:+14587758 | MS.gene31838:CDS |
CGCAGTTCGTCATTCCTTGT+TGG | 0.350817 | 1.1:-14587546 | None:intergenic |
CGTTCATCACAATCAAGTTC+TGG | 0.391796 | 1.1:+14586125 | MS.gene31838:CDS |
ATTCTTGTCAAATTTCTAAT+GGG | 0.396632 | 1.1:-14587573 | None:intergenic |
ACTATCGCAACCATGCTTAT+GGG | 0.422034 | 1.1:+14587814 | MS.gene31838:CDS |
ATTTAGTCCCTTTGCAGGTA+GGG | 0.436276 | 1.1:+14587520 | MS.gene31838:intron |
TATGGGCCATGGGTAGGTTA+GGG | 0.451016 | 1.1:+14587751 | MS.gene31838:CDS |
GATGTGTGTGTCTGAATTCA+TGG | 0.465046 | 1.1:+14587656 | MS.gene31838:CDS |
GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1.1:+14587717 | MS.gene31838:CDS |
GATTTAGTCCCTTTGCAGGT+AGG | 0.490896 | 1.1:+14587519 | MS.gene31838:intron |
TAGTGGTGAAGATTTAATAT+GGG | 0.494669 | 1.1:+14587734 | MS.gene31838:CDS |
GGGTTCAACAAGGATGGATC+AGG | 0.507582 | 1.1:+14587834 | MS.gene31838:CDS |
AATTGCATGCATATCAATGT+TGG | 0.519524 | 1.1:-14587884 | None:intergenic |
TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1.1:+14587768 | MS.gene31838:CDS |
TTGGACTCCCTACCTGCAAA+GGG | 0.534149 | 1.1:-14587527 | None:intergenic |
TGAAGATTTAATATGGGCCA+TGG | 0.535798 | 1.1:+14587740 | MS.gene31838:CDS |
AGTGGCTCGAGCAGTGGCAA+TGG | 0.552171 | 1.1:+14587861 | MS.gene31838:CDS |
GTTGGACTCCCTACCTGCAA+AGG | 0.560700 | 1.1:-14587528 | None:intergenic |
GCTTATGGGTTCAACAAGGA+TGG | 0.560755 | 1.1:+14587828 | MS.gene31838:CDS |
ATTTAATATGGGCCATGGGT+AGG | 0.572332 | 1.1:+14587745 | MS.gene31838:CDS |
TGAACGGTTGTTGTTAAATG+AGG | 0.576425 | 1.1:-14586108 | None:intergenic |
TCCTAAAGCAGTATGGAGCA+TGG | 0.581430 | 1.1:+14586080 | None:intergenic |
AAGGATGGATCAGGTGCTAG+TGG | 0.598209 | 1.1:+14587843 | MS.gene31838:CDS |
GGTGCTAGTGGCTCGAGCAG+TGG | 0.601799 | 1.1:+14587855 | MS.gene31838:CDS |
GAAGATTTAATATGGGCCAT+GGG | 0.602532 | 1.1:+14587741 | MS.gene31838:CDS |
CCTTGTTGAACCCATAAGCA+TGG | 0.602629 | 1.1:-14587824 | None:intergenic |
CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1.1:-14587757 | None:intergenic |
TGCAGGTAGGGAGTCCAACA+AGG | 0.616172 | 1.1:+14587532 | MS.gene31838:CDS |
CCATGCTTATGGGTTCAACA+AGG | 0.642059 | 1.1:+14587824 | MS.gene31838:CDS |
CAGAACTTGATTGTGATGAA+CGG | 0.644512 | 1.1:-14586124 | None:intergenic |
ATGTGTGTGTCTGAATTCAT+GGG | 0.648992 | 1.1:+14587657 | MS.gene31838:CDS |
CATGGGCATCATCATCACTG+AGG | 0.744966 | 1.1:+14587674 | MS.gene31838:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAAATTAAAACATGTAA+TGG | - | chr1.1:14587402-14587421 | None:intergenic | 10.0% |
!!! | TTATTGTATTTAAAACTAAT+AGG | + | chr1.1:14586884-14586903 | MS.gene31838:intron | 10.0% |
!! | AGAGAGTAATTATATTTAAA+AGG | + | chr1.1:14586273-14586292 | MS.gene31838:intron | 15.0% |
!!! | GATCCATATTTTTTTTTTTT+TGG | - | chr1.1:14586645-14586664 | None:intergenic | 15.0% |
!!! | TGAATGAAATTTTGATTTAA+GGG | + | chr1.1:14586615-14586634 | MS.gene31838:intron | 15.0% |
!!! | TTGAATGAAATTTTGATTTA+AGG | + | chr1.1:14586614-14586633 | MS.gene31838:intron | 15.0% |
!! | AAAAAATTGAAATCTTAGCA+AGG | - | chr1.1:14586853-14586872 | None:intergenic | 20.0% |
!! | ATTCTTGTCAAATTTCTAAT+GGG | - | chr1.1:14587576-14587595 | None:intergenic | 20.0% |
!! | GTGCCAAAAAAAAAAAAATA+TGG | + | chr1.1:14586639-14586658 | MS.gene31838:intron | 20.0% |
!!! | AACAAAACTGAAGTATTTAA+AGG | - | chr1.1:14587020-14587039 | None:intergenic | 20.0% |
!!! | AATGAAATTTTGATTTAAGG+GGG | + | chr1.1:14586617-14586636 | MS.gene31838:intron | 20.0% |
!!! | ACAAAACTGAAGTATTTAAA+GGG | - | chr1.1:14587019-14587038 | None:intergenic | 20.0% |
!!! | CTAAAAAAAATTTGAGATCT+TGG | + | chr1.1:14586778-14586797 | MS.gene31838:intron | 20.0% |
!!! | CTTTTCTTCTTTTTAATCTA+AGG | - | chr1.1:14587217-14587236 | None:intergenic | 20.0% |
!!! | GAAATTATACGTTACATTTT+TGG | + | chr1.1:14587236-14587255 | MS.gene31838:intron | 20.0% |
!!! | GAATGAAATTTTGATTTAAG+GGG | + | chr1.1:14586616-14586635 | MS.gene31838:intron | 20.0% |
!!! | TGTGTATATATTGTTTTGAA+TGG | + | chr1.1:14586361-14586380 | MS.gene31838:intron | 20.0% |
! | AAAAATATCTCAAGATGCTA+AGG | + | chr1.1:14587623-14587642 | MS.gene31838:CDS | 25.0% |
! | AATAAAAGTGAGAGAAAAGT+TGG | + | chr1.1:14586973-14586992 | MS.gene31838:intron | 25.0% |
! | AGAAAAGAAAGATCTAACTT+GGG | + | chr1.1:14586537-14586556 | MS.gene31838:intron | 25.0% |
! | ATAAAAGTGAGAGAAAAGTT+GGG | + | chr1.1:14586974-14586993 | MS.gene31838:intron | 25.0% |
! | GATTCTTGTCAAATTTCTAA+TGG | - | chr1.1:14587577-14587596 | None:intergenic | 25.0% |
! | TAGTGGTGAAGATTTAATAT+GGG | + | chr1.1:14587734-14587753 | MS.gene31838:CDS | 25.0% |
! | TGGGTGAAAAAAATAAACAA+GGG | + | chr1.1:14586993-14587012 | MS.gene31838:intron | 25.0% |
! | TTAGTGGTGAAGATTTAATA+TGG | + | chr1.1:14587733-14587752 | MS.gene31838:CDS | 25.0% |
! | TTGGGTGAAAAAAATAAACA+AGG | + | chr1.1:14586992-14587011 | MS.gene31838:intron | 25.0% |
!! | GTATTTTACCATGTCAAAAA+TGG | - | chr1.1:14586587-14586606 | None:intergenic | 25.0% |
!! | GTGTGAGTGTTATAAATTTT+GGG | + | chr1.1:14586736-14586755 | MS.gene31838:intron | 25.0% |
!! | TGTGAGTGTTATAAATTTTG+GGG | + | chr1.1:14586737-14586756 | MS.gene31838:intron | 25.0% |
!! | TGTGTGAGTGTTATAAATTT+TGG | + | chr1.1:14586735-14586754 | MS.gene31838:intron | 25.0% |
!! | TTCTTCTTTTTAATCTAAGG+TGG | - | chr1.1:14587214-14587233 | None:intergenic | 25.0% |
!!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1.1:14586765-14586784 | None:intergenic | 25.0% |
AAAGAGATAGAGGTCAAATA+TGG | - | chr1.1:14586668-14586687 | None:intergenic | 30.0% | |
AAATTGAGAGAAAGAGATAG+AGG | - | chr1.1:14586678-14586697 | None:intergenic | 30.0% | |
AAGAGATAGAGGTCAAATAT+GGG | - | chr1.1:14586667-14586686 | None:intergenic | 30.0% | |
AATCTAAGAGAAGCAGTTAA+AGG | - | chr1.1:14586497-14586516 | None:intergenic | 30.0% | |
ACCATTAGATAGATCAACAA+TGG | - | chr1.1:14587050-14587069 | None:intergenic | 30.0% | |
ATCTAAGAGAAGCAGTTAAA+GGG | - | chr1.1:14586496-14586515 | None:intergenic | 30.0% | |
CAGAAAAGAAAGATCTAACT+TGG | + | chr1.1:14586536-14586555 | MS.gene31838:intron | 30.0% | |
TCCATTGTTGATCTATCTAA+TGG | + | chr1.1:14587046-14587065 | MS.gene31838:intron | 30.0% | |
! | AGTTAGATCTTTCTTTTCTG+AGG | - | chr1.1:14586536-14586555 | None:intergenic | 30.0% |
! | CTTAACTATGTGCTTCTTTT+TGG | + | chr1.1:14587497-14587516 | MS.gene31838:intron | 30.0% |
! | TCCTTCTTTTTATTGCATAG+AGG | - | chr1.1:14587288-14587307 | None:intergenic | 30.0% |
!! | CTTGTTAACCATTTTTGACA+TGG | + | chr1.1:14586576-14586595 | MS.gene31838:intron | 30.0% |
ATGTGTGTGTCTGAATTCAT+GGG | + | chr1.1:14587657-14587676 | MS.gene31838:CDS | 35.0% | |
CAGAACTTGATTGTGATGAA+CGG | - | chr1.1:14586127-14586146 | None:intergenic | 35.0% | |
GAAGATTTAATATGGGCCAT+GGG | + | chr1.1:14587741-14587760 | MS.gene31838:CDS | 35.0% | |
GCCTCTATGCAATAAAAAGA+AGG | + | chr1.1:14587284-14587303 | MS.gene31838:intron | 35.0% | |
TCTAAGAGAAGCAGTTAAAG+GGG | - | chr1.1:14586495-14586514 | None:intergenic | 35.0% | |
TGAAGATTTAATATGGGCCA+TGG | + | chr1.1:14587740-14587759 | MS.gene31838:CDS | 35.0% | |
! | TGAACGGTTGTTGTTAAATG+AGG | - | chr1.1:14586111-14586130 | None:intergenic | 35.0% |
!! | TGAGATATTTTTGCGTACGA+TGG | - | chr1.1:14587615-14587634 | None:intergenic | 35.0% |
AACTATCGCAACCATGCTTA+TGG | + | chr1.1:14587813-14587832 | MS.gene31838:CDS | 40.0% | |
ACTATCGCAACCATGCTTAT+GGG | + | chr1.1:14587814-14587833 | MS.gene31838:CDS | 40.0% | |
ATTTAATATGGGCCATGGGT+AGG | + | chr1.1:14587745-14587764 | MS.gene31838:CDS | 40.0% | |
ATTTAGTCCCTTTGCAGGTA+GGG | + | chr1.1:14587520-14587539 | MS.gene31838:intron | 40.0% | |
CGTTCATCACAATCAAGTTC+TGG | + | chr1.1:14586125-14586144 | MS.gene31838:CDS | 40.0% | |
CTGCTTCTCTTAGATTCTCA+AGG | + | chr1.1:14586501-14586520 | MS.gene31838:intron | 40.0% | |
GAGAGTCGAAAGATCATTAG+TGG | + | chr1.1:14587717-14587736 | MS.gene31838:CDS | 40.0% | |
GATGTGTGTGTCTGAATTCA+TGG | + | chr1.1:14587656-14587675 | MS.gene31838:CDS | 40.0% | |
TTAGGGTTTGAGGACTATGT+TGG | + | chr1.1:14587768-14587787 | MS.gene31838:CDS | 40.0% | |
TTTGGATTTAGTCCCTTTGC+AGG | + | chr1.1:14587515-14587534 | MS.gene31838:intron | 40.0% | |
! | AAGCATGGTTGCGATAGTTT+TGG | - | chr1.1:14587812-14587831 | None:intergenic | 40.0% |
! | TGTAGTCACCTTTTACAAGC+TGG | + | chr1.1:14587184-14587203 | MS.gene31838:intron | 40.0% |
!! | TTTTGGAGGAGAACAGATAG+AGG | - | chr1.1:14587795-14587814 | None:intergenic | 40.0% |
CATGCATCACATGACGTTAG+TGG | - | chr1.1:14587164-14587183 | None:intergenic | 45.0% | |
CCATGCTTATGGGTTCAACA+AGG | + | chr1.1:14587824-14587843 | MS.gene31838:CDS | 45.0% | |
CCTTGTTGAACCCATAAGCA+TGG | - | chr1.1:14587827-14587846 | None:intergenic | 45.0% | |
GAGCAGATCTGCGTATACAA+TGG | + | chr1.1:14586816-14586835 | MS.gene31838:intron | 45.0% | |
GATTTAGTCCCTTTGCAGGT+AGG | + | chr1.1:14587519-14587538 | MS.gene31838:intron | 45.0% | |
GCTTATGGGTTCAACAAGGA+TGG | + | chr1.1:14587828-14587847 | MS.gene31838:CDS | 45.0% | |
GTGGCAAACCAGCTTGTAAA+AGG | - | chr1.1:14587195-14587214 | None:intergenic | 45.0% | |
!!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1.1:14587809-14587828 | None:intergenic | 45.0% |
!! | TTATAATAATAAATTAATCA+AGG | + | chr1.1:14586919-14586938 | MS.gene31838:intron | 5.0% |
!!! | TTTTATTGAAAATAATTTTA+AGG | - | chr1.1:14587428-14587447 | None:intergenic | 5.0% |
AAGGATGGATCAGGTGCTAG+TGG | + | chr1.1:14587843-14587862 | MS.gene31838:CDS | 50.0% | |
ATATGGGCCATGGGTAGGTT+AGG | + | chr1.1:14587750-14587769 | MS.gene31838:CDS | 50.0% | |
CATGGGCATCATCATCACTG+AGG | + | chr1.1:14587674-14587693 | MS.gene31838:CDS | 50.0% | |
CATGGGTAGGTTAGGGTTTG+AGG | + | chr1.1:14587758-14587777 | MS.gene31838:CDS | 50.0% | |
CGCAGTTCGTCATTCCTTGT+TGG | - | chr1.1:14587549-14587568 | None:intergenic | 50.0% | |
CTCAAACCCTAACCTACCCA+TGG | - | chr1.1:14587760-14587779 | None:intergenic | 50.0% | |
GGGTTCAACAAGGATGGATC+AGG | + | chr1.1:14587834-14587853 | MS.gene31838:CDS | 50.0% | |
TATGGGCCATGGGTAGGTTA+GGG | + | chr1.1:14587751-14587770 | MS.gene31838:CDS | 50.0% | |
TTGGACTCCCTACCTGCAAA+GGG | - | chr1.1:14587530-14587549 | None:intergenic | 50.0% | |
GTTGGACTCCCTACCTGCAA+AGG | - | chr1.1:14587531-14587550 | None:intergenic | 55.0% | |
TGCAGGTAGGGAGTCCAACA+AGG | + | chr1.1:14587532-14587551 | MS.gene31838:CDS | 55.0% | |
AGTGGCTCGAGCAGTGGCAA+TGG | + | chr1.1:14587861-14587880 | MS.gene31838:CDS | 60.0% | |
GGTGCTAGTGGCTCGAGCAG+TGG | + | chr1.1:14587855-14587874 | MS.gene31838:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 14586092 | 14587893 | 14586092 | ID=MS.gene31838 |
chr1.1 | mRNA | 14586092 | 14587893 | 14586092 | ID=MS.gene31838.t1;Parent=MS.gene31838 |
chr1.1 | exon | 14586092 | 14586146 | 14586092 | ID=MS.gene31838.t1.exon1;Parent=MS.gene31838.t1 |
chr1.1 | CDS | 14586092 | 14586146 | 14586092 | ID=cds.MS.gene31838.t1;Parent=MS.gene31838.t1 |
chr1.1 | exon | 14587526 | 14587893 | 14587526 | ID=MS.gene31838.t1.exon2;Parent=MS.gene31838.t1 |
chr1.1 | CDS | 14587526 | 14587893 | 14587526 | ID=cds.MS.gene31838.t1;Parent=MS.gene31838.t1 |
Gene Sequence |
Protein sequence |