Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31839.t1 | XP_013466407.1 | 91.7 | 168 | 14 | 0 | 1 | 168 | 1 | 168 | 5.60E-76 | 293.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31839.t1 | O23310 | 52.4 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 1.5e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31839.t1 | A0A072VGA7 | 91.7 | 168 | 14 | 0 | 1 | 168 | 1 | 168 | 4.0e-76 | 293.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31839.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31839.t1 | MTR_1g029070 | 91.772 | 158 | 13 | 0 | 1 | 158 | 1 | 158 | 3.02e-103 | 295 |
| MS.gene31839.t1 | MTR_8g091720 | 47.541 | 122 | 58 | 1 | 32 | 153 | 14 | 129 | 3.31e-34 | 120 |
| MS.gene31839.t1 | MTR_1g072790 | 53.333 | 105 | 45 | 1 | 57 | 161 | 34 | 134 | 4.19e-34 | 119 |
| MS.gene31839.t1 | MTR_1g039040 | 57.303 | 89 | 38 | 0 | 57 | 145 | 11 | 99 | 1.28e-33 | 119 |
| MS.gene31839.t1 | MTR_7g061270 | 48.214 | 112 | 47 | 1 | 57 | 168 | 31 | 131 | 3.71e-33 | 117 |
| MS.gene31839.t1 | MTR_7g100650 | 48.214 | 112 | 47 | 1 | 57 | 168 | 31 | 131 | 4.52e-33 | 116 |
| MS.gene31839.t1 | MTR_2g026710 | 56.044 | 91 | 40 | 0 | 57 | 147 | 22 | 112 | 5.91e-32 | 114 |
| MS.gene31839.t1 | MTR_5g095740 | 46.094 | 128 | 58 | 2 | 39 | 159 | 3 | 126 | 1.18e-31 | 113 |
| MS.gene31839.t1 | MTR_3g058980 | 56.180 | 89 | 39 | 0 | 57 | 145 | 32 | 120 | 5.73e-31 | 112 |
| MS.gene31839.t1 | MTR_4g133952 | 40.441 | 136 | 80 | 1 | 9 | 144 | 16 | 150 | 1.79e-30 | 112 |
| MS.gene31839.t1 | MTR_4g133938 | 48.182 | 110 | 57 | 0 | 53 | 162 | 20 | 129 | 6.08e-30 | 107 |
| MS.gene31839.t1 | MTR_1g088860 | 44.954 | 109 | 60 | 0 | 37 | 145 | 21 | 129 | 1.66e-29 | 108 |
| MS.gene31839.t1 | MTR_8g093920 | 53.933 | 89 | 41 | 0 | 57 | 145 | 45 | 133 | 4.01e-29 | 107 |
| MS.gene31839.t1 | MTR_4g119500 | 49.474 | 95 | 48 | 0 | 57 | 151 | 27 | 121 | 1.03e-28 | 104 |
| MS.gene31839.t1 | MTR_0392s0020 | 50.000 | 88 | 44 | 0 | 57 | 144 | 23 | 110 | 4.53e-27 | 100 |
| MS.gene31839.t1 | MTR_1g028480 | 56.098 | 82 | 36 | 0 | 87 | 168 | 24 | 105 | 1.06e-26 | 98.6 |
| MS.gene31839.t1 | MTR_1g029100 | 45.000 | 80 | 44 | 0 | 53 | 132 | 3 | 82 | 7.33e-22 | 85.5 |
| MS.gene31839.t1 | MTR_1g083070 | 42.529 | 87 | 50 | 0 | 57 | 143 | 9 | 95 | 1.85e-21 | 85.5 |
| MS.gene31839.t1 | MTR_5g095900 | 33.721 | 86 | 57 | 0 | 56 | 141 | 20 | 105 | 1.69e-13 | 66.2 |
| MS.gene31839.t1 | MTR_2g056000 | 26.126 | 111 | 82 | 0 | 37 | 147 | 26 | 136 | 2.14e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31839.t1 | AT4G14540 | 52.381 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 3.86e-34 | 119 |
| MS.gene31839.t1 | AT2G38880 | 50.893 | 112 | 51 | 2 | 57 | 168 | 26 | 133 | 7.23e-33 | 115 |
| MS.gene31839.t1 | AT3G53340 | 42.029 | 138 | 57 | 2 | 30 | 167 | 19 | 133 | 1.02e-32 | 116 |
| MS.gene31839.t1 | AT3G53340 | 42.029 | 138 | 57 | 2 | 30 | 167 | 19 | 133 | 1.02e-32 | 116 |
| MS.gene31839.t1 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 1.32e-32 | 114 |
| MS.gene31839.t1 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 1.63e-32 | 114 |
| MS.gene31839.t1 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 1.63e-32 | 114 |
| MS.gene31839.t1 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 1.63e-32 | 114 |
| MS.gene31839.t1 | AT5G47640 | 55.435 | 92 | 41 | 0 | 57 | 148 | 32 | 123 | 3.43e-32 | 115 |
| MS.gene31839.t1 | AT1G21970 | 40.523 | 153 | 78 | 3 | 1 | 143 | 1 | 150 | 3.60e-31 | 114 |
| MS.gene31839.t1 | AT2G37060 | 50.000 | 94 | 47 | 0 | 57 | 150 | 35 | 128 | 4.58e-31 | 111 |
| MS.gene31839.t1 | AT2G37060 | 50.000 | 94 | 47 | 0 | 57 | 150 | 35 | 128 | 4.58e-31 | 111 |
| MS.gene31839.t1 | AT2G37060 | 50.000 | 94 | 47 | 0 | 57 | 150 | 35 | 128 | 4.58e-31 | 111 |
| MS.gene31839.t1 | AT5G47670 | 49.505 | 101 | 51 | 0 | 57 | 157 | 34 | 134 | 4.94e-31 | 112 |
| MS.gene31839.t1 | AT5G47670 | 53.933 | 89 | 41 | 0 | 57 | 145 | 63 | 151 | 1.05e-30 | 112 |
| MS.gene31839.t1 | AT5G47670 | 53.933 | 89 | 41 | 0 | 57 | 145 | 63 | 151 | 1.05e-30 | 112 |
| MS.gene31839.t1 | AT3G53340 | 45.045 | 111 | 49 | 1 | 30 | 140 | 19 | 117 | 2.10e-30 | 108 |
| MS.gene31839.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.81e-30 | 107 |
| MS.gene31839.t1 | AT3G53340 | 43.966 | 116 | 53 | 1 | 30 | 145 | 19 | 122 | 3.67e-30 | 108 |
| MS.gene31839.t1 | AT3G53340 | 43.966 | 116 | 53 | 1 | 30 | 145 | 19 | 122 | 3.67e-30 | 108 |
| MS.gene31839.t1 | AT2G13570 | 55.056 | 89 | 40 | 0 | 57 | 145 | 41 | 129 | 4.96e-30 | 110 |
| MS.gene31839.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 8.80e-30 | 108 |
| MS.gene31839.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 8.80e-30 | 108 |
| MS.gene31839.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.43e-29 | 106 |
| MS.gene31839.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.43e-29 | 106 |
| MS.gene31839.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.43e-29 | 106 |
| MS.gene31839.t1 | AT2G47810 | 48.864 | 88 | 45 | 0 | 53 | 140 | 52 | 139 | 7.23e-27 | 100 |
| MS.gene31839.t1 | AT1G09030 | 42.727 | 110 | 61 | 1 | 51 | 160 | 2 | 109 | 4.72e-26 | 97.8 |
| MS.gene31839.t1 | AT5G08190 | 27.358 | 106 | 77 | 0 | 46 | 151 | 5 | 110 | 1.92e-11 | 60.1 |
| MS.gene31839.t1 | AT5G08190 | 30.952 | 84 | 58 | 0 | 46 | 129 | 5 | 88 | 2.99e-11 | 59.7 |
Find 54 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGATTCTTGTCAAATTT+CGG | 0.290312 | 1.1:-14600687 | None:intergenic |
| CCTCATGGTTGCGATAGTTT+TGG | 0.293177 | 1.1:-14600918 | None:intergenic |
| TTAGTGGTGAAGATATAATA+TGG | 0.337402 | 1.1:+14600842 | MS.gene31839:CDS |
| TGATGGAATCTCTTTAACTT+TGG | 0.338255 | 1.1:-14602447 | None:intergenic |
| CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1.1:+14600867 | MS.gene31839:CDS |
| ATATGGGCCATGGGTAGGTT+AGG | 0.348171 | 1.1:+14600859 | MS.gene31839:CDS |
| ATTGTGTGTGTCTGATTTCA+TGG | 0.410886 | 1.1:+14600765 | MS.gene31839:CDS |
| AACATGGATGGGTCGGGTGC+TGG | 0.425049 | 1.1:+14600976 | MS.gene31839:CDS |
| AGCAGCCACGACCTTGCAAT+TGG | 0.433509 | 1.1:-14602422 | None:intergenic |
| CACAGTTCCTCATTTGTTGT+TGG | 0.457296 | 1.1:-14600655 | None:intergenic |
| ACACAATTGTGTTGTTGCCT+TGG | 0.463454 | 1.1:-14600749 | None:intergenic |
| ATGGATGGGTCGGGTGCTGG+TGG | 0.486211 | 1.1:+14600979 | MS.gene31839:CDS |
| GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1.1:+14600826 | MS.gene31839:CDS |
| TATGGGCCATGGGTAGGTTA+GGG | 0.487469 | 1.1:+14600860 | MS.gene31839:CDS |
| GTCACCGGTTCTCTTTATGA+TGG | 0.492471 | 1.1:-14602464 | None:intergenic |
| GATTTAGTCCGTTTGCAAGC+AGG | 0.497822 | 1.1:+14600559 | MS.gene31839:intron |
| TGGATTCAACATGGATGGGT+CGG | 0.500255 | 1.1:+14600969 | MS.gene31839:CDS |
| GATTCCATCATAAAGAGAAC+CGG | 0.501779 | 1.1:+14602460 | MS.gene31839:CDS |
| AGTTCCTCATTTGTTGTTGG+AGG | 0.507953 | 1.1:-14600652 | None:intergenic |
| GGATTCAACATGGATGGGTC+GGG | 0.516213 | 1.1:+14600970 | MS.gene31839:CDS |
| ATTTAGTCCGTTTGCAAGCA+GGG | 0.519142 | 1.1:+14600560 | MS.gene31839:intron |
| GATTCTTGTCAAATTTCGGA+TGG | 0.519326 | 1.1:-14600683 | None:intergenic |
| CCATTCCAATTGCAAGGTCG+TGG | 0.521522 | 1.1:+14602417 | MS.gene31839:CDS |
| TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1.1:+14600877 | MS.gene31839:CDS |
| TGAAGATATAATATGGGCCA+TGG | 0.523399 | 1.1:+14600849 | MS.gene31839:CDS |
| ATGGACTCCCTGCTTGCAAA+CGG | 0.525534 | 1.1:-14600567 | None:intergenic |
| GCTCGTGGATTCAACATGGA+TGG | 0.528087 | 1.1:+14600964 | MS.gene31839:CDS |
| GGTGCTGGTGGCTCGAGCAG+TGG | 0.541755 | 1.1:+14600991 | MS.gene31839:CDS |
| CGTTCAGCACAATCAAGCTC+TGG | 0.543458 | 1.1:+14599341 | MS.gene31839:CDS |
| TAGTGGTGAAGATATAATAT+GGG | 0.544148 | 1.1:+14600843 | MS.gene31839:CDS |
| CCACGACCTTGCAATTGGAA+TGG | 0.552067 | 1.1:-14602417 | None:intergenic |
| TGAACGGTTGTTGTTAAATG+AGG | 0.552826 | 1.1:-14599324 | None:intergenic |
| TCTATTCCATTCCAATTGCA+AGG | 0.563000 | 1.1:+14602411 | MS.gene31839:CDS |
| TCCTAAAGTAGCATGGAGCA+TGG | 0.582752 | 1.1:+14599296 | None:intergenic |
| AGTGGCACGTCAACTGCTCG+TGG | 0.583180 | 1.1:+14600949 | MS.gene31839:CDS |
| CTCGTGGATTCAACATGGAT+GGG | 0.584715 | 1.1:+14600965 | MS.gene31839:CDS |
| TTTACCTCCAACAACAAATG+AGG | 0.591369 | 1.1:+14600648 | MS.gene31839:CDS |
| AACCATGAGGCTCAATTCAG+TGG | 0.593599 | 1.1:+14600931 | MS.gene31839:CDS |
| ATTCTTGTCAAATTTCGGAT+GGG | 0.595454 | 1.1:-14600682 | None:intergenic |
| ATGAAAACAATGAATCTCCA+AGG | 0.596844 | 1.1:+14600590 | MS.gene31839:CDS |
| TTGTGTGTGTCTGATTTCAT+GGG | 0.598205 | 1.1:+14600766 | MS.gene31839:CDS |
| ATATAATATGGGCCATGGGT+AGG | 0.601954 | 1.1:+14600854 | MS.gene31839:CDS |
| AACTGCTCGTGGATTCAACA+TGG | 0.604751 | 1.1:+14600960 | MS.gene31839:CDS |
| CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1.1:-14600866 | None:intergenic |
| GAAGATATAATATGGGCCAT+GGG | 0.615040 | 1.1:+14600850 | MS.gene31839:CDS |
| GCATTTCTCAACAGCCTCAG+TGG | 0.623536 | 1.1:-14600797 | None:intergenic |
| CAGAGCTTGATTGTGCTGAA+CGG | 0.629066 | 1.1:-14599340 | None:intergenic |
| TGCCACTGAATTGAGCCTCA+TGG | 0.650553 | 1.1:-14600933 | None:intergenic |
| GGAATGGAATAGAACAGCCA+CGG | 0.651290 | 1.1:-14602401 | None:intergenic |
| GAACGGTTGTTGTTAAATGA+GGG | 0.692444 | 1.1:-14599323 | None:intergenic |
| TACCATGTAGGTGTTTGCCG+TGG | 0.693233 | 1.1:+14602384 | MS.gene31839:intron |
| GAAATTTGACAAGAATCATG+CGG | 0.699293 | 1.1:+14600689 | MS.gene31839:CDS |
| CCAAAACTATCGCAACCATG+AGG | 0.711644 | 1.1:+14600918 | MS.gene31839:CDS |
| CATGGGCATCATCACCACTG+AGG | 0.758004 | 1.1:+14600783 | MS.gene31839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAATAAAATCAATTAA+GGG | - | chr1.1:14599608-14599627 | None:intergenic | 10.0% |
| !!! | ATTATTGTATTTAAAACTAA+TGG | + | chr1.1:14600021-14600040 | MS.gene31839:intron | 10.0% |
| !!! | TTAATGAAATTTTGATTTAA+GGG | + | chr1.1:14599753-14599772 | MS.gene31839:intron | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+GGG | + | chr1.1:14600022-14600041 | MS.gene31839:intron | 10.0% |
| !!! | TTTAATGAAATTTTGATTTA+AGG | + | chr1.1:14599752-14599771 | MS.gene31839:intron | 10.0% |
| !! | AAAAATAAAAAAAAGAGAAG+AGG | - | chr1.1:14601173-14601192 | None:intergenic | 15.0% |
| !! | ATCTAATAAAATCAATTAAG+GGG | - | chr1.1:14599607-14599626 | None:intergenic | 15.0% |
| !! | ATGCAATAATATAAATGAAA+AGG | - | chr1.1:14602130-14602149 | None:intergenic | 15.0% |
| !! | CAAAAGAAAATAATATGAAT+TGG | - | chr1.1:14601857-14601876 | None:intergenic | 15.0% |
| !! | GAATCTAATAAAATCAATTA+AGG | - | chr1.1:14599609-14599628 | None:intergenic | 15.0% |
| !! | TGCAATAATATAAATGAAAA+GGG | - | chr1.1:14602129-14602148 | None:intergenic | 15.0% |
| !!! | TAATGAAATTTTGATTTAAG+GGG | + | chr1.1:14599754-14599773 | MS.gene31839:intron | 15.0% |
| !!! | TATTATTTTAATATGTCTGA+GGG | + | chr1.1:14599859-14599878 | MS.gene31839:intron | 15.0% |
| !!! | TTATTATTTTAATATGTCTG+AGG | + | chr1.1:14599858-14599877 | MS.gene31839:intron | 15.0% |
| !!! | TTTAAAATACCTCATTTTTT+TGG | + | chr1.1:14601134-14601153 | MS.gene31839:intron | 15.0% |
| !!! | TTTTTCTACTTTTAAATCTA+AGG | - | chr1.1:14600351-14600370 | None:intergenic | 15.0% |
| !! | AAAACACAAAAAAAAAGAGA+TGG | - | chr1.1:14602156-14602175 | None:intergenic | 20.0% |
| !! | AAAATTGAAACTTCAAAACT+AGG | - | chr1.1:14601669-14601688 | None:intergenic | 20.0% |
| !! | AAATATAGATGCAATATGAT+TGG | - | chr1.1:14602043-14602062 | None:intergenic | 20.0% |
| !! | AAATTGAAACTTCAAAACTA+GGG | - | chr1.1:14601668-14601687 | None:intergenic | 20.0% |
| !! | AATATAAATGAAAAGGGAAT+TGG | - | chr1.1:14602123-14602142 | None:intergenic | 20.0% |
| !! | ATGGAAATTAAAGAACAATA+TGG | - | chr1.1:14601998-14602017 | None:intergenic | 20.0% |
| !! | CAAATAACTAATAATAACGA+TGG | - | chr1.1:14602017-14602036 | None:intergenic | 20.0% |
| !! | TCTAATAAAATCAATTAAGG+GGG | - | chr1.1:14599606-14599625 | None:intergenic | 20.0% |
| !!! | ATCAAAATCAATCTTTTACA+AGG | - | chr1.1:14599513-14599532 | None:intergenic | 20.0% |
| !!! | TATTATTTTAGAGAAATACG+AGG | - | chr1.1:14599430-14599449 | None:intergenic | 20.0% |
| !!! | TTGATTTTATTAGATTCTCA+AGG | + | chr1.1:14599612-14599631 | MS.gene31839:intron | 20.0% |
| !!! | TTTTGCAGGTTTAATTTATA+GGG | - | chr1.1:14601542-14601561 | None:intergenic | 20.0% |
| ! | AAAAAAAAAACCGAAAGGAT+GGG | - | chr1.1:14601830-14601849 | None:intergenic | 25.0% |
| ! | AACAAGTAATTGTATTGGAA+TGG | - | chr1.1:14602078-14602097 | None:intergenic | 25.0% |
| ! | AACTAGGGTTATGAAAATTA+CGG | - | chr1.1:14601653-14601672 | None:intergenic | 25.0% |
| ! | AATAAAAAAATTCGACAGAG+AGG | + | chr1.1:14601108-14601127 | MS.gene31839:intron | 25.0% |
| ! | ACTCTGTGTAATAAAAAAGA+AGG | + | chr1.1:14600423-14600442 | MS.gene31839:intron | 25.0% |
| ! | AGCAAAATTGACGTATTTAA+GGG | - | chr1.1:14600161-14600180 | None:intergenic | 25.0% |
| ! | ATATGGAACTAGATCATAAA+AGG | - | chr1.1:14601981-14602000 | None:intergenic | 25.0% |
| ! | GAGTTAAAAAAAAAACCGAA+AGG | - | chr1.1:14601835-14601854 | None:intergenic | 25.0% |
| ! | GGGATGACAAAAAAAAAATA+TGG | + | chr1.1:14599774-14599793 | MS.gene31839:intron | 25.0% |
| ! | TAAAAAAAAAACCGAAAGGA+TGG | - | chr1.1:14601831-14601850 | None:intergenic | 25.0% |
| ! | TAGAAATAAAGTGAGAGAAA+AGG | + | chr1.1:14600112-14600131 | MS.gene31839:intron | 25.0% |
| ! | TAGCAAAATTGACGTATTTA+AGG | - | chr1.1:14600162-14600181 | None:intergenic | 25.0% |
| ! | TAGTGGTGAAGATATAATAT+GGG | + | chr1.1:14600843-14600862 | MS.gene31839:CDS | 25.0% |
| ! | TTAGTGGTGAAGATATAATA+TGG | + | chr1.1:14600842-14600861 | MS.gene31839:CDS | 25.0% |
| ! | TTCATTGTTGATCTATCTAA+TGG | + | chr1.1:14600187-14600206 | MS.gene31839:intron | 25.0% |
| !! | AACATATTTTATGCATCAAC+AGG | - | chr1.1:14602318-14602337 | None:intergenic | 25.0% |
| !! | AATTTCAGCATCAATGTTTT+TGG | - | chr1.1:14600617-14600636 | None:intergenic | 25.0% |
| !! | ACATATTTTATGCATCAACA+GGG | - | chr1.1:14602317-14602336 | None:intergenic | 25.0% |
| !! | ACGACATCAATTTGAAATAT+GGG | - | chr1.1:14602265-14602284 | None:intergenic | 25.0% |
| !! | ATCAATTTGAAATATGGGTT+TGG | - | chr1.1:14602260-14602279 | None:intergenic | 25.0% |
| !! | CTAAAAAAGATTTGAGATCT+TGG | + | chr1.1:14599915-14599934 | MS.gene31839:intron | 25.0% |
| !! | TTGTTATAGCTATTTCACTT+CGG | + | chr1.1:14602291-14602310 | MS.gene31839:intron | 25.0% |
| !!! | CAAGACTCTAAAGTAAATTA+CGG | - | chr1.1:14601721-14601740 | None:intergenic | 25.0% |
| !!! | GTTTTGCAGGTTTAATTTAT+AGG | - | chr1.1:14601543-14601562 | None:intergenic | 25.0% |
| !!! | TTCTACTTTTAAATCTAAGG+TGG | - | chr1.1:14600348-14600367 | None:intergenic | 25.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1.1:14599902-14599921 | None:intergenic | 25.0% |
| AAAAATATCTCAAGATGCCA+AGG | + | chr1.1:14600732-14600751 | MS.gene31839:CDS | 30.0% | |
| AAATAAAGTGAGAGAAAAGG+TGG | + | chr1.1:14600115-14600134 | MS.gene31839:intron | 30.0% | |
| AATAAAGTGAGAGAAAAGGT+GGG | + | chr1.1:14600116-14600135 | MS.gene31839:intron | 30.0% | |
| AATAGAGGGACTATTAACAA+TGG | - | chr1.1:14601922-14601941 | None:intergenic | 30.0% | |
| AATTTCAATTCCCATCCTTT+CGG | + | chr1.1:14601817-14601836 | MS.gene31839:intron | 30.0% | |
| ACAATTACACAGAGATGAAA+AGG | - | chr1.1:14601764-14601783 | None:intergenic | 30.0% | |
| ACTAGATCATAAAAGGACAA+TGG | - | chr1.1:14601974-14601993 | None:intergenic | 30.0% | |
| ATGAAAACAATGAATCTCCA+AGG | + | chr1.1:14600590-14600609 | MS.gene31839:CDS | 30.0% | |
| ATTATACATGTGATGTGAAC+AGG | - | chr1.1:14601414-14601433 | None:intergenic | 30.0% | |
| ATTCAATTTCAATTGCTTGC+TGG | + | chr1.1:14602343-14602362 | MS.gene31839:intron | 30.0% | |
| ATTCTTGTCAAATTTCGGAT+GGG | - | chr1.1:14600685-14600704 | None:intergenic | 30.0% | |
| CAATTACACAGAGATGAAAA+GGG | - | chr1.1:14601763-14601782 | None:intergenic | 30.0% | |
| GAAATTTGACAAGAATCATG+CGG | + | chr1.1:14600689-14600708 | MS.gene31839:CDS | 30.0% | |
| GATTAATTCATGTGTTTGCT+GGG | + | chr1.1:14602183-14602202 | MS.gene31839:intron | 30.0% | |
| GCAAAATTGACGTATTTAAG+GGG | - | chr1.1:14600160-14600179 | None:intergenic | 30.0% | |
| GCATGATTCTTGTCAAATTT+CGG | - | chr1.1:14600690-14600709 | None:intergenic | 30.0% | |
| GTGAAATAGCTATAACAAGA+AGG | - | chr1.1:14602289-14602308 | None:intergenic | 30.0% | |
| TGACATCAACTTGAAATAGA+GGG | - | chr1.1:14601936-14601955 | None:intergenic | 30.0% | |
| TGATTAATTCATGTGTTTGC+TGG | + | chr1.1:14602182-14602201 | MS.gene31839:intron | 30.0% | |
| TGTCAATTATACGTTACGTT+CGG | + | chr1.1:14600392-14600411 | MS.gene31839:intron | 30.0% | |
| ! | CACGACATCAATTTGAAATA+TGG | - | chr1.1:14602266-14602285 | None:intergenic | 30.0% |
| ! | CAGGTTTAATTTATAGGGTA+AGG | - | chr1.1:14601537-14601556 | None:intergenic | 30.0% |
| ! | GGAGATTCATTGTTTTCATA+TGG | - | chr1.1:14600589-14600608 | None:intergenic | 30.0% |
| ! | GTCTGAGGGTTATAAATTTT+GGG | + | chr1.1:14599873-14599892 | MS.gene31839:intron | 30.0% |
| ! | TCTGAGGGTTATAAATTTTG+GGG | + | chr1.1:14599874-14599893 | MS.gene31839:intron | 30.0% |
| ! | TGATGGAATCTCTTTAACTT+TGG | - | chr1.1:14602450-14602469 | None:intergenic | 30.0% |
| ! | TGTCTGAGGGTTATAAATTT+TGG | + | chr1.1:14599872-14599891 | MS.gene31839:intron | 30.0% |
| !!! | GTGCATCACTTTTTTTTTGA+AGG | + | chr1.1:14599678-14599697 | MS.gene31839:intron | 30.0% |
| !!! | TTGTTAGCGATTTTTTACAC+TGG | + | chr1.1:14599715-14599734 | MS.gene31839:intron | 30.0% |
| AAACCTGCAAAACACACATT+AGG | + | chr1.1:14601550-14601569 | MS.gene31839:intron | 35.0% | |
| AAAGTAAATTACGGCTGCTA+GGG | - | chr1.1:14601712-14601731 | None:intergenic | 35.0% | |
| AAGCAAGAAATCAGTAGCTT+GGG | - | chr1.1:14601488-14601507 | None:intergenic | 35.0% | |
| ACGCAGAAGACAAATGAAAA+AGG | - | chr1.1:14601302-14601321 | None:intergenic | 35.0% | |
| AGGATCCTTAGGTCAAAAAT+TGG | - | chr1.1:14601033-14601052 | None:intergenic | 35.0% | |
| ATCTCTGTGTAATTGTTGTG+CGG | + | chr1.1:14601768-14601787 | MS.gene31839:intron | 35.0% | |
| ATGAAAATTACGGTAGCTAC+AGG | - | chr1.1:14601643-14601662 | None:intergenic | 35.0% | |
| ATTGTGTGTGTCTGATTTCA+TGG | + | chr1.1:14600765-14600784 | MS.gene31839:CDS | 35.0% | |
| CGGAAAGAAAGATCTAACTT+GGG | + | chr1.1:14599647-14599666 | MS.gene31839:intron | 35.0% | |
| CTTAACTACGTGCTTATGTT+TGG | + | chr1.1:14600537-14600556 | MS.gene31839:intron | 35.0% | |
| GAAGATATAATATGGGCCAT+GGG | + | chr1.1:14600850-14600869 | MS.gene31839:CDS | 35.0% | |
| GATCCTTAGGTCAAAAATTG+GGG | - | chr1.1:14601031-14601050 | None:intergenic | 35.0% | |
| GATTCCATCATAAAGAGAAC+CGG | + | chr1.1:14602460-14602479 | MS.gene31839:CDS | 35.0% | |
| GATTCTTGTCAAATTTCGGA+TGG | - | chr1.1:14600686-14600705 | None:intergenic | 35.0% | |
| GCAGCAACAAGTAATTGTAT+TGG | - | chr1.1:14602083-14602102 | None:intergenic | 35.0% | |
| GGATCCTTAGGTCAAAAATT+GGG | - | chr1.1:14601032-14601051 | None:intergenic | 35.0% | |
| GGGACTATTAACAATGGAAA+TGG | - | chr1.1:14601916-14601935 | None:intergenic | 35.0% | |
| GTGACATCAACTTGAAATAG+AGG | - | chr1.1:14601937-14601956 | None:intergenic | 35.0% | |
| GTGTGTGAAAATTGTGTTGT+TGG | - | chr1.1:14601615-14601634 | None:intergenic | 35.0% | |
| TAAAGTAAATTACGGCTGCT+AGG | - | chr1.1:14601713-14601732 | None:intergenic | 35.0% | |
| TAGTAACGTTAGCAGCAAAA+TGG | - | chr1.1:14602234-14602253 | None:intergenic | 35.0% | |
| TCGGAAAGAAAGATCTAACT+TGG | + | chr1.1:14599646-14599665 | MS.gene31839:intron | 35.0% | |
| TCTATTCCATTCCAATTGCA+AGG | + | chr1.1:14602411-14602430 | MS.gene31839:CDS | 35.0% | |
| TGAAGATATAATATGGGCCA+TGG | + | chr1.1:14600849-14600868 | MS.gene31839:CDS | 35.0% | |
| TGTATGAATGTAGGATCCTT+AGG | - | chr1.1:14601044-14601063 | None:intergenic | 35.0% | |
| TTGTGTGTGTCTGATTTCAT+GGG | + | chr1.1:14600766-14600785 | MS.gene31839:CDS | 35.0% | |
| TTTACCTCCAACAACAAATG+AGG | + | chr1.1:14600648-14600667 | MS.gene31839:CDS | 35.0% | |
| ! | ATACCCCAATTTTTGACCTA+AGG | + | chr1.1:14601025-14601044 | MS.gene31839:intron | 35.0% |
| ! | GAACGGTTGTTGTTAAATGA+GGG | - | chr1.1:14599326-14599345 | None:intergenic | 35.0% |
| ! | TCTCAAGGCATTATTTGCTT+CGG | + | chr1.1:14599627-14599646 | MS.gene31839:intron | 35.0% |
| ! | TGAACGGTTGTTGTTAAATG+AGG | - | chr1.1:14599327-14599346 | None:intergenic | 35.0% |
| !! | GTTTGTTTCTACTACCATGT+AGG | + | chr1.1:14602372-14602391 | MS.gene31839:intron | 35.0% |
| !! | TGAGATATTTTTGCGTACGA+TGG | - | chr1.1:14600724-14600743 | None:intergenic | 35.0% |
| !!! | TCATTTTTTTGGTTCCGAGT+CGG | + | chr1.1:14601145-14601164 | MS.gene31839:intron | 35.0% |
| AAGCAAAGTTGTTGCTGGAT+TGG | - | chr1.1:14601456-14601475 | None:intergenic | 40.0% | |
| ACATCATCACTTGACGTTAG+TGG | - | chr1.1:14600299-14600318 | None:intergenic | 40.0% | |
| AGAAGAAGCAAAGTTGTTGC+TGG | - | chr1.1:14601461-14601480 | None:intergenic | 40.0% | |
| AGACAATCGATCAAGATCGA+AGG | - | chr1.1:14601078-14601097 | None:intergenic | 40.0% | |
| AGCAAAGTTGTTGCTGGATT+GGG | - | chr1.1:14601455-14601474 | None:intergenic | 40.0% | |
| AGCAAGAAATCAGTAGCTTG+GGG | - | chr1.1:14601487-14601506 | None:intergenic | 40.0% | |
| AGGGTAAGGTTGAGACTTTA+GGG | - | chr1.1:14601523-14601542 | None:intergenic | 40.0% | |
| ATATAATATGGGCCATGGGT+AGG | + | chr1.1:14600854-14600873 | MS.gene31839:CDS | 40.0% | |
| ATTTAGTCCGTTTGCAAGCA+GGG | + | chr1.1:14600560-14600579 | MS.gene31839:intron | 40.0% | |
| GAAGCAAGAAATCAGTAGCT+TGG | - | chr1.1:14601489-14601508 | None:intergenic | 40.0% | |
| GAATTGGAATTGAAACCGAG+CGG | - | chr1.1:14602107-14602126 | None:intergenic | 40.0% | |
| GACAATCGATCAAGATCGAA+GGG | - | chr1.1:14601077-14601096 | None:intergenic | 40.0% | |
| GACTCGGAACCAAAAAAATG+AGG | - | chr1.1:14601146-14601165 | None:intergenic | 40.0% | |
| GAGAGTCGAAAGATCATTAG+TGG | + | chr1.1:14600826-14600845 | MS.gene31839:CDS | 40.0% | |
| GGTGGGTGACAAAATAAACA+AGG | + | chr1.1:14600133-14600152 | MS.gene31839:intron | 40.0% | |
| TAGGGTAAGGTTGAGACTTT+AGG | - | chr1.1:14601524-14601543 | None:intergenic | 40.0% | |
| TCTAATGGTGTGAAGCTAAC+TGG | + | chr1.1:14600202-14600221 | MS.gene31839:intron | 40.0% | |
| TGCAAAACACACATTAGGAG+AGG | + | chr1.1:14601555-14601574 | MS.gene31839:intron | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | + | chr1.1:14600877-14600896 | MS.gene31839:CDS | 40.0% | |
| ! | ACACAATTGTGTTGTTGCCT+TGG | - | chr1.1:14600752-14600771 | None:intergenic | 40.0% |
| ! | ATTTCAATTGCTTGCTGGTG+TGG | + | chr1.1:14602348-14602367 | MS.gene31839:intron | 40.0% |
| ! | TAATTCATGTGTTTGCTGGG+TGG | + | chr1.1:14602186-14602205 | MS.gene31839:intron | 40.0% |
| ! | TCTCCTAATGTGTGTTTTGC+AGG | - | chr1.1:14601556-14601575 | None:intergenic | 40.0% |
| ! | TGTAGTCACCTTTTACATGC+TGG | + | chr1.1:14600318-14600337 | MS.gene31839:intron | 40.0% |
| !! | AAGGTTGAGACTTTAGGGTT+TGG | - | chr1.1:14601518-14601537 | None:intergenic | 40.0% |
| !! | AGTTCCTCATTTGTTGTTGG+AGG | - | chr1.1:14600655-14600674 | None:intergenic | 40.0% |
| !! | CACAGTTCCTCATTTGTTGT+TGG | - | chr1.1:14600658-14600677 | None:intergenic | 40.0% |
| !! | TTTTGGAGGAGAAGAGATAG+AGG | - | chr1.1:14600904-14600923 | None:intergenic | 40.0% |
| !!! | CATTTTTTTGGTTCCGAGTC+GGG | + | chr1.1:14601146-14601165 | MS.gene31839:intron | 40.0% |
| !!! | GCATCAATGTTTTTGGTCCT+TGG | - | chr1.1:14600610-14600629 | None:intergenic | 40.0% |
| AACCATGAGGCTCAATTCAG+TGG | + | chr1.1:14600931-14600950 | MS.gene31839:CDS | 45.0% | |
| AACTGCTCGTGGATTCAACA+TGG | + | chr1.1:14600960-14600979 | MS.gene31839:CDS | 45.0% | |
| AAGAAATCAGTAGCTTGGGG+AGG | - | chr1.1:14601484-14601503 | None:intergenic | 45.0% | |
| ACACATCCACTTTGCGATTG+CGG | + | chr1.1:14601794-14601813 | MS.gene31839:intron | 45.0% | |
| CAGAGCTTGATTGTGCTGAA+CGG | - | chr1.1:14599343-14599362 | None:intergenic | 45.0% | |
| CCAAAACTATCGCAACCATG+AGG | + | chr1.1:14600918-14600937 | MS.gene31839:CDS | 45.0% | |
| CTCGTGGATTCAACATGGAT+GGG | + | chr1.1:14600965-14600984 | MS.gene31839:CDS | 45.0% | |
| GAAATTCCGCAATCGCAAAG+TGG | - | chr1.1:14601803-14601822 | None:intergenic | 45.0% | |
| GAGCAGATCTGCGTATACAA+TGG | + | chr1.1:14599953-14599972 | MS.gene31839:intron | 45.0% | |
| GATTTAGTCCGTTTGCAAGC+AGG | + | chr1.1:14600559-14600578 | MS.gene31839:intron | 45.0% | |
| GGAATGGAATAGAACAGCCA+CGG | - | chr1.1:14602404-14602423 | None:intergenic | 45.0% | |
| GTCTTCTGCGTGTCAAAGAT+AGG | + | chr1.1:14601311-14601330 | MS.gene31839:intron | 45.0% | |
| GTGGCAAACCAGCATGTAAA+AGG | - | chr1.1:14600329-14600348 | None:intergenic | 45.0% | |
| TGGATTCAACATGGATGGGT+CGG | + | chr1.1:14600969-14600988 | MS.gene31839:CDS | 45.0% | |
| ! | ACGTGTCGGTGTATGAATGT+AGG | - | chr1.1:14601053-14601072 | None:intergenic | 45.0% |
| ! | CCTCATGGTTGCGATAGTTT+TGG | - | chr1.1:14600921-14600940 | None:intergenic | 45.0% |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1.1:14600918-14600937 | None:intergenic | 45.0% |
| !! | AAGTAAATAAAAAAAAAATT+TGG | - | chr1.1:14601338-14601357 | None:intergenic | 5.0% |
| !! | AATAATAAATTAATTATTTG+AGG | + | chr1.1:14600061-14600080 | MS.gene31839:intron | 5.0% |
| !! | AATTAATTAAAAATAAAAGA+TGG | - | chr1.1:14601224-14601243 | None:intergenic | 5.0% |
| !!! | ATTTTTTATTTATTAATTAG+AGG | + | chr1.1:14601358-14601377 | MS.gene31839:intron | 5.0% |
| AAAGAGAAGAGGACCCGACT+CGG | - | chr1.1:14601162-14601181 | None:intergenic | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | + | chr1.1:14600859-14600878 | MS.gene31839:CDS | 50.0% | |
| ATGGACTCCCTGCTTGCAAA+CGG | - | chr1.1:14600570-14600589 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | + | chr1.1:14600867-14600886 | MS.gene31839:CDS | 50.0% | |
| CCACGACCTTGCAATTGGAA+TGG | - | chr1.1:14602420-14602439 | None:intergenic | 50.0% | |
| CCATTCCAATTGCAAGGTCG+TGG | + | chr1.1:14602417-14602436 | MS.gene31839:CDS | 50.0% | |
| CGTTCAGCACAATCAAGCTC+TGG | + | chr1.1:14599341-14599360 | MS.gene31839:CDS | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | - | chr1.1:14600869-14600888 | None:intergenic | 50.0% | |
| GCATTTCTCAACAGCCTCAG+TGG | - | chr1.1:14600800-14600819 | None:intergenic | 50.0% | |
| GCTCGTGGATTCAACATGGA+TGG | + | chr1.1:14600964-14600983 | MS.gene31839:CDS | 50.0% | |
| GGATTCAACATGGATGGGTC+GGG | + | chr1.1:14600970-14600989 | MS.gene31839:CDS | 50.0% | |
| TACCATGTAGGTGTTTGCCG+TGG | + | chr1.1:14602384-14602403 | MS.gene31839:intron | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | + | chr1.1:14600860-14600879 | MS.gene31839:CDS | 50.0% | |
| TGCCACTGAATTGAGCCTCA+TGG | - | chr1.1:14600936-14600955 | None:intergenic | 50.0% | |
| TGTGATGTGAACAGGCTGTG+TGG | - | chr1.1:14601406-14601425 | None:intergenic | 50.0% | |
| TTACGGCTGCTAGGGTTCAA+AGG | - | chr1.1:14601704-14601723 | None:intergenic | 50.0% | |
| ! | GTGAACAGGCTGTGTGGTTT+TGG | - | chr1.1:14601400-14601419 | None:intergenic | 50.0% |
| !! | GCTGGGTGGCTTTGTTTGTT+TGG | + | chr1.1:14602200-14602219 | MS.gene31839:intron | 50.0% |
| AGCAGCCACGACCTTGCAAT+TGG | - | chr1.1:14602425-14602444 | None:intergenic | 55.0% | |
| AGCCACGGCAAACACCTACA+TGG | - | chr1.1:14602389-14602408 | None:intergenic | 55.0% | |
| CATGGGCATCATCACCACTG+AGG | + | chr1.1:14600783-14600802 | MS.gene31839:CDS | 55.0% | |
| ! | CAAGATCGAAGGGCACGTGT+CGG | - | chr1.1:14601067-14601086 | None:intergenic | 55.0% |
| ! | TTACTTGTTGCTGCGCCGCT+CGG | + | chr1.1:14602089-14602108 | MS.gene31839:intron | 55.0% |
| AACATGGATGGGTCGGGTGC+TGG | + | chr1.1:14600976-14600995 | MS.gene31839:CDS | 60.0% | |
| AGTGGCACGTCAACTGCTCG+TGG | + | chr1.1:14600949-14600968 | MS.gene31839:CDS | 60.0% | |
| GGTGGCTCGAGCAGTGGTAA+TGG | + | chr1.1:14600997-14601016 | MS.gene31839:intron | 60.0% | |
| !! | ATGGATGGGTCGGGTGCTGG+TGG | + | chr1.1:14600979-14600998 | MS.gene31839:CDS | 65.0% |
| !! | GGTGCTGGTGGCTCGAGCAG+TGG | + | chr1.1:14600991-14601010 | MS.gene31839:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14599308 | 14602485 | 14599308 | ID=MS.gene31839 |
| chr1.1 | mRNA | 14599308 | 14602485 | 14599308 | ID=MS.gene31839.t1;Parent=MS.gene31839 |
| chr1.1 | exon | 14599308 | 14599362 | 14599308 | ID=MS.gene31839.t1.exon1;Parent=MS.gene31839.t1 |
| chr1.1 | CDS | 14599308 | 14599362 | 14599308 | ID=cds.MS.gene31839.t1;Parent=MS.gene31839.t1 |
| chr1.1 | exon | 14600566 | 14601012 | 14600566 | ID=MS.gene31839.t1.exon2;Parent=MS.gene31839.t1 |
| chr1.1 | CDS | 14600566 | 14601012 | 14600566 | ID=cds.MS.gene31839.t1;Parent=MS.gene31839.t1 |
| chr1.1 | exon | 14602394 | 14602485 | 14602394 | ID=MS.gene31839.t1.exon3;Parent=MS.gene31839.t1 |
| chr1.1 | CDS | 14602394 | 14602485 | 14602394 | ID=cds.MS.gene31839.t1;Parent=MS.gene31839.t1 |
| Gene Sequence |
| Protein sequence |
