Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31841.t1 | AFK49669.1 | 84.1 | 88 | 13 | 1 | 42 | 129 | 1 | 87 | 3.00E-29 | 138.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31841.t1 | Q9SLG0 | 39.8 | 108 | 62 | 1 | 44 | 148 | 21 | 128 | 5.8e-13 | 75.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31841.t1 | I3TAX7 | 84.1 | 88 | 13 | 1 | 42 | 129 | 1 | 87 | 2.2e-29 | 138.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31841.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31841.t1 | MTR_1g029100 | 83.146 | 89 | 14 | 1 | 42 | 130 | 1 | 88 | 1.27e-46 | 147 |
MS.gene31841.t1 | MTR_1g029070 | 41.844 | 141 | 72 | 3 | 1 | 132 | 1 | 140 | 1.70e-27 | 100 |
MS.gene31841.t1 | MTR_1g072790 | 38.393 | 112 | 59 | 1 | 38 | 139 | 23 | 134 | 1.95e-21 | 85.5 |
MS.gene31841.t1 | MTR_4g133952 | 38.889 | 90 | 55 | 0 | 44 | 133 | 58 | 147 | 6.67e-21 | 85.5 |
MS.gene31841.t1 | MTR_3g058980 | 38.462 | 104 | 63 | 1 | 44 | 147 | 27 | 129 | 6.82e-21 | 84.3 |
MS.gene31841.t1 | MTR_1g088860 | 35.200 | 125 | 79 | 1 | 9 | 133 | 3 | 125 | 6.90e-21 | 84.3 |
MS.gene31841.t1 | MTR_7g061270 | 36.607 | 112 | 68 | 1 | 44 | 152 | 26 | 137 | 1.26e-20 | 83.2 |
MS.gene31841.t1 | MTR_7g100650 | 36.607 | 112 | 68 | 1 | 44 | 152 | 26 | 137 | 1.48e-20 | 83.2 |
MS.gene31841.t1 | MTR_1g039040 | 40.816 | 98 | 57 | 1 | 44 | 141 | 6 | 102 | 2.58e-20 | 82.8 |
MS.gene31841.t1 | MTR_8g091720 | 38.679 | 106 | 64 | 1 | 44 | 149 | 28 | 132 | 3.12e-20 | 82.8 |
MS.gene31841.t1 | MTR_5g095740 | 41.111 | 90 | 53 | 0 | 44 | 133 | 23 | 112 | 6.38e-20 | 81.6 |
MS.gene31841.t1 | MTR_2g026710 | 40.426 | 94 | 55 | 1 | 44 | 137 | 17 | 109 | 8.38e-20 | 80.9 |
MS.gene31841.t1 | MTR_4g119500 | 32.520 | 123 | 83 | 0 | 26 | 148 | 4 | 126 | 2.25e-19 | 79.0 |
MS.gene31841.t1 | MTR_0392s0020 | 33.628 | 113 | 64 | 1 | 21 | 133 | 6 | 107 | 2.45e-19 | 79.0 |
MS.gene31841.t1 | MTR_4g133938 | 40.230 | 87 | 52 | 0 | 47 | 133 | 22 | 108 | 2.95e-19 | 79.0 |
MS.gene31841.t1 | MTR_8g093920 | 40.449 | 89 | 53 | 0 | 44 | 132 | 40 | 128 | 6.12e-18 | 77.4 |
MS.gene31841.t1 | MTR_1g083070 | 35.294 | 85 | 55 | 0 | 49 | 133 | 9 | 93 | 2.90e-17 | 73.6 |
MS.gene31841.t1 | MTR_1g028480 | 38.372 | 86 | 39 | 1 | 80 | 151 | 25 | 110 | 1.33e-14 | 66.2 |
MS.gene31841.t1 | MTR_5g095900 | 34.524 | 84 | 55 | 0 | 49 | 132 | 21 | 104 | 1.46e-13 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31841.t1 | AT2G38880 | 40.566 | 106 | 62 | 1 | 44 | 148 | 21 | 126 | 1.40e-22 | 87.4 |
MS.gene31841.t1 | AT3G53340 | 40.541 | 111 | 63 | 1 | 44 | 151 | 29 | 139 | 2.20e-22 | 87.8 |
MS.gene31841.t1 | AT3G53340 | 40.541 | 111 | 63 | 1 | 44 | 151 | 29 | 139 | 2.20e-22 | 87.8 |
MS.gene31841.t1 | AT2G38880 | 39.815 | 108 | 62 | 1 | 44 | 148 | 21 | 128 | 3.05e-22 | 86.7 |
MS.gene31841.t1 | AT2G38880 | 39.815 | 108 | 62 | 1 | 44 | 148 | 21 | 128 | 3.13e-22 | 86.7 |
MS.gene31841.t1 | AT2G38880 | 39.815 | 108 | 62 | 1 | 44 | 148 | 21 | 128 | 3.13e-22 | 86.7 |
MS.gene31841.t1 | AT2G38880 | 39.815 | 108 | 62 | 1 | 44 | 148 | 21 | 128 | 3.13e-22 | 86.7 |
MS.gene31841.t1 | AT2G37060 | 39.640 | 111 | 64 | 1 | 44 | 151 | 30 | 140 | 8.08e-22 | 86.3 |
MS.gene31841.t1 | AT2G37060 | 39.640 | 111 | 64 | 1 | 44 | 151 | 30 | 140 | 8.08e-22 | 86.3 |
MS.gene31841.t1 | AT2G37060 | 39.640 | 111 | 64 | 1 | 44 | 151 | 30 | 140 | 8.08e-22 | 86.3 |
MS.gene31841.t1 | AT2G38880 | 41.111 | 90 | 53 | 0 | 44 | 133 | 21 | 110 | 1.64e-20 | 81.3 |
MS.gene31841.t1 | AT4G14540 | 41.111 | 90 | 53 | 0 | 44 | 133 | 21 | 110 | 1.90e-20 | 82.4 |
MS.gene31841.t1 | AT2G38880 | 41.111 | 90 | 53 | 0 | 44 | 133 | 21 | 110 | 3.72e-20 | 82.0 |
MS.gene31841.t1 | AT2G38880 | 41.111 | 90 | 53 | 0 | 44 | 133 | 21 | 110 | 3.72e-20 | 82.0 |
MS.gene31841.t1 | AT5G47640 | 42.222 | 90 | 52 | 0 | 44 | 133 | 27 | 116 | 4.56e-20 | 82.4 |
MS.gene31841.t1 | AT1G21970 | 32.886 | 149 | 83 | 2 | 1 | 133 | 1 | 148 | 6.90e-20 | 82.8 |
MS.gene31841.t1 | AT2G38880 | 41.111 | 90 | 53 | 0 | 44 | 133 | 21 | 110 | 2.06e-19 | 79.7 |
MS.gene31841.t1 | AT2G38880 | 41.111 | 90 | 53 | 0 | 44 | 133 | 21 | 110 | 2.06e-19 | 79.7 |
MS.gene31841.t1 | AT2G38880 | 41.111 | 90 | 53 | 0 | 44 | 133 | 21 | 110 | 2.06e-19 | 79.7 |
MS.gene31841.t1 | AT2G47810 | 37.374 | 99 | 62 | 0 | 34 | 132 | 41 | 139 | 2.25e-19 | 79.7 |
MS.gene31841.t1 | AT3G53340 | 42.222 | 90 | 52 | 0 | 44 | 133 | 29 | 118 | 2.71e-19 | 78.6 |
MS.gene31841.t1 | AT5G47670 | 36.000 | 100 | 64 | 0 | 44 | 143 | 29 | 128 | 4.79e-19 | 80.1 |
MS.gene31841.t1 | AT5G47670 | 36.000 | 100 | 64 | 0 | 44 | 143 | 58 | 157 | 7.67e-19 | 80.1 |
MS.gene31841.t1 | AT5G47670 | 36.000 | 100 | 64 | 0 | 44 | 143 | 58 | 157 | 7.67e-19 | 80.1 |
MS.gene31841.t1 | AT3G53340 | 42.222 | 90 | 52 | 0 | 44 | 133 | 29 | 118 | 5.15e-18 | 75.9 |
MS.gene31841.t1 | AT3G53340 | 42.222 | 90 | 52 | 0 | 44 | 133 | 29 | 118 | 5.15e-18 | 75.9 |
MS.gene31841.t1 | AT2G13570 | 40.449 | 89 | 53 | 0 | 44 | 132 | 36 | 124 | 5.80e-17 | 74.7 |
MS.gene31841.t1 | AT1G09030 | 31.522 | 92 | 63 | 0 | 42 | 133 | 1 | 92 | 7.41e-16 | 70.1 |
Find 39 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCACTTCCTCGCCCATTGC+TGG | 0.310496 | 1.1:-14625449 | None:intergenic |
TTTCCGCTGATGATTTACTA+TGG | 0.336830 | 1.1:+14625639 | MS.gene31841:CDS |
ATTTACTATGGACGATGAAT+AGG | 0.363355 | 1.1:+14625651 | MS.gene31841:CDS |
GAGGAACATGTTCGGTCTCT+TGG | 0.363705 | 1.1:+14625683 | MS.gene31841:CDS |
GATGCTCTACATTGGCTTGT+TGG | 0.407680 | 1.1:-14625607 | None:intergenic |
GATGAATAGGTTGGGCTTTG+AGG | 0.431149 | 1.1:+14625664 | MS.gene31841:CDS |
AGGAACATGTTCGGTCTCTT+GGG | 0.445239 | 1.1:+14625684 | MS.gene31841:CDS |
CTATGGACGATGAATAGGTT+GGG | 0.452990 | 1.1:+14625656 | MS.gene31841:CDS |
ACCAACAACAACACTGGCAT+TGG | 0.458777 | 1.1:+14625404 | MS.gene31841:CDS |
TCCAATGCCAGTGTTGTTGT+TGG | 0.470529 | 1.1:-14625405 | None:intergenic |
TCAACGTTGGTCATCATCAT+TGG | 0.472149 | 1.1:-14625768 | None:intergenic |
CGCAAGAACATGGATGGGTC+AGG | 0.479316 | 1.1:+14625725 | MS.gene31841:CDS |
GACTCTTGTCACGTGACTGA+TGG | 0.479441 | 1.1:-14625480 | None:intergenic |
AACTATCGCAAGAACATGGA+TGG | 0.501574 | 1.1:+14625719 | MS.gene31841:CDS |
TGTGTCTAAATTTAAGTGCA+AGG | 0.501776 | 1.1:+14625568 | MS.gene31841:CDS |
TGGGCTTTGAGGAACATGTT+CGG | 0.504221 | 1.1:+14625675 | MS.gene31841:CDS |
CAACATTCAACTCCAGCAAT+GGG | 0.504417 | 1.1:+14625437 | MS.gene31841:CDS |
CCATTGCTGGAGTTGAATGT+TGG | 0.510977 | 1.1:-14625436 | None:intergenic |
GCCAGTGTTGTTGTTGGTGG+CGG | 0.514598 | 1.1:-14625399 | None:intergenic |
AATGCCAGTGTTGTTGTTGG+TGG | 0.520685 | 1.1:-14625402 | None:intergenic |
CGTTCGACACAATCAAGATC+TGG | 0.523771 | 1.1:+14624304 | MS.gene31841:CDS |
TCATCAGTGATTATTGTGTC+TGG | 0.528332 | 1.1:-14625521 | None:intergenic |
ACTATGGACGATGAATAGGT+TGG | 0.532041 | 1.1:+14625655 | MS.gene31841:CDS |
CCAACATTCAACTCCAGCAA+TGG | 0.549683 | 1.1:+14625436 | MS.gene31841:CDS |
ATTCTCTTGATGCTCTACAT+TGG | 0.555958 | 1.1:-14625615 | None:intergenic |
CGAACGGTTGTTGTTAGATG+AGG | 0.556426 | 1.1:-14624287 | None:intergenic |
AATAATCACTGATGATGCTA+AGG | 0.558102 | 1.1:+14625529 | MS.gene31841:CDS |
TTCAACTCCAGCAATGGGCG+AGG | 0.564498 | 1.1:+14625442 | MS.gene31841:CDS |
ACTCTTGTCACGTGACTGAT+GGG | 0.569137 | 1.1:-14625479 | None:intergenic |
ATGGATGGGTCAGGTGCTAG+TGG | 0.576300 | 1.1:+14625734 | MS.gene31841:CDS |
CGTTAATTTCATATCAACGT+TGG | 0.576753 | 1.1:-14625781 | None:intergenic |
GAACGGTTGTTGTTAGATGA+GGG | 0.584819 | 1.1:-14624286 | None:intergenic |
CAGATCTTGATTGTGTCGAA+CGG | 0.594407 | 1.1:-14624303 | None:intergenic |
ACCGCCACCAACAACAACAC+TGG | 0.598342 | 1.1:+14625398 | MS.gene31841:CDS |
TCCTGAAGTAATATGGAGCG+TGG | 0.600798 | 1.1:+14624259 | None:intergenic |
TCAGTGATTATTGTGTCTGG+TGG | 0.634070 | 1.1:-14625518 | None:intergenic |
ACTATCGCAAGAACATGGAT+GGG | 0.635414 | 1.1:+14625720 | MS.gene31841:CDS |
TAAGTGCAAGGTCACAAGTG+AGG | 0.636231 | 1.1:+14625580 | MS.gene31841:CDS |
CGTCCATAGTAAATCATCAG+CGG | 0.656317 | 1.1:-14625642 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATAAATTAAAAATATTAA+AGG | - | chr1.1:14624709-14624728 | None:intergenic | 0.0% |
!! | ACTTTGTAAAATATTGAATA+TGG | + | chr1.1:14624404-14624423 | MS.gene31841:intron | 15.0% |
!! | AGTAAAAAAATTAAAATACG+AGG | - | chr1.1:14624387-14624406 | None:intergenic | 15.0% |
!!! | ATCTTGAAATTAATTTTGTT+CGG | + | chr1.1:14624796-14624815 | MS.gene31841:intron | 15.0% |
!! | AAATAAAGTAAAAGAGATAG+AGG | - | chr1.1:14624678-14624697 | None:intergenic | 20.0% |
!! | AATCTAATAGAAGCAATTAA+GGG | - | chr1.1:14624503-14624522 | None:intergenic | 20.0% |
!!! | TACCAAATCTTTTAATTTTG+AGG | + | chr1.1:14625314-14625333 | MS.gene31841:intron | 20.0% |
!!! | TGAATGAAATTTTGATTGAA+GGG | + | chr1.1:14624621-14624640 | MS.gene31841:intron | 20.0% |
!!! | TTGAATGAAATTTTGATTGA+AGG | + | chr1.1:14624620-14624639 | MS.gene31841:intron | 20.0% |
!!! | TTGTTAACCATTTTTGATAT+GGG | + | chr1.1:14624583-14624602 | MS.gene31841:intron | 20.0% |
! | AAAACAACTTTGCTAAGATT+TGG | + | chr1.1:14624846-14624865 | MS.gene31841:intron | 25.0% |
! | AACAAAACTGACGTATTTAA+TGG | - | chr1.1:14625017-14625036 | None:intergenic | 25.0% |
! | AAGAAATAAAGTGAGAGAAA+AGG | + | chr1.1:14624968-14624987 | MS.gene31841:intron | 25.0% |
! | ACAAAACTGACGTATTTAAT+GGG | - | chr1.1:14625016-14625035 | None:intergenic | 25.0% |
! | ATCTAATAGAAGCAATTAAG+GGG | - | chr1.1:14624502-14624521 | None:intergenic | 25.0% |
! | CTCCTCAAAATTAAAAGATT+TGG | - | chr1.1:14625319-14625338 | None:intergenic | 25.0% |
! | GAATCTAATAGAAGCAATTA+AGG | - | chr1.1:14624504-14624523 | None:intergenic | 25.0% |
!! | CTTTTCTTCTTTTTAATCGA+AGG | - | chr1.1:14625214-14625233 | None:intergenic | 25.0% |
!! | GTATTTTCCCATATCAAAAA+TGG | - | chr1.1:14624593-14624612 | None:intergenic | 25.0% |
!! | TTGTGAGCGTTATAAATTTT+GGG | + | chr1.1:14624738-14624757 | MS.gene31841:intron | 25.0% |
!!! | CTTGTTAACCATTTTTGATA+TGG | + | chr1.1:14624582-14624601 | MS.gene31841:intron | 25.0% |
!!! | GAATGAAATTTTGATTGAAG+GGG | + | chr1.1:14624622-14624641 | MS.gene31841:intron | 25.0% |
AAAGAGATAGAGGTCAAATA+TGG | - | chr1.1:14624668-14624687 | None:intergenic | 30.0% | |
AAATAAAGTGAGAGAAAAGG+TGG | + | chr1.1:14624971-14624990 | MS.gene31841:intron | 30.0% | |
AAGAGATAGAGGTCAAATAT+GGG | - | chr1.1:14624667-14624686 | None:intergenic | 30.0% | |
AATAAAGTGAGAGAAAAGGT+GGG | + | chr1.1:14624972-14624991 | MS.gene31841:intron | 30.0% | |
ATTTACTATGGACGATGAAT+AGG | + | chr1.1:14625651-14625670 | MS.gene31841:CDS | 30.0% | |
CAAAACTGACGTATTTAATG+GGG | - | chr1.1:14625015-14625034 | None:intergenic | 30.0% | |
TGTGTCTAAATTTAAGTGCA+AGG | + | chr1.1:14625568-14625587 | MS.gene31841:CDS | 30.0% | |
TTGCTTCTATTAGATTCTCA+AGG | + | chr1.1:14624507-14624526 | MS.gene31841:intron | 30.0% | |
TTGTAAAACATTGTAGCTGA+AGG | + | chr1.1:14625371-14625390 | MS.gene31841:intron | 30.0% | |
! | AATAATCACTGATGATGCTA+AGG | + | chr1.1:14625529-14625548 | MS.gene31841:CDS | 30.0% |
! | CTTGTGAGCGTTATAAATTT+TGG | + | chr1.1:14624737-14624756 | MS.gene31841:intron | 30.0% |
! | TCAGCTACAATGTTTTACAA+TGG | - | chr1.1:14625371-14625390 | None:intergenic | 30.0% |
! | TGTGAGCGTTATAAATTTTG+GGG | + | chr1.1:14624739-14624758 | MS.gene31841:intron | 30.0% |
!! | TTTTGAGTGTGAATCGAATT+CGG | - | chr1.1:14624767-14624786 | None:intergenic | 30.0% |
ATTCTCTTGATGCTCTACAT+TGG | - | chr1.1:14625618-14625637 | None:intergenic | 35.0% | |
CAAAAACTATCGCAAGAACA+TGG | + | chr1.1:14625715-14625734 | MS.gene31841:CDS | 35.0% | |
GAGCAGATTTGTGTATACAA+TGG | + | chr1.1:14624818-14624837 | MS.gene31841:intron | 35.0% | |
TCATCAGTGATTATTGTGTC+TGG | - | chr1.1:14625524-14625543 | None:intergenic | 35.0% | |
TCTAATAGTGTGAAGCTAAC+TGG | + | chr1.1:14625058-14625077 | MS.gene31841:intron | 35.0% | |
TCTCAAGGAATTTATTGCCT+CGG | + | chr1.1:14624522-14624541 | MS.gene31841:intron | 35.0% | |
TTTCCGCTGATGATTTACTA+TGG | + | chr1.1:14625639-14625658 | MS.gene31841:CDS | 35.0% | |
! | GCTACAATGTTTTACAATGG+AGG | - | chr1.1:14625368-14625387 | None:intergenic | 35.0% |
! | GTAGTCACATTTTTACAAGC+TGG | + | chr1.1:14625181-14625200 | MS.gene31841:intron | 35.0% |
! | TGTTCTTGCGATAGTTTTTG+AGG | - | chr1.1:14625715-14625734 | None:intergenic | 35.0% |
AACTATCGCAAGAACATGGA+TGG | + | chr1.1:14625719-14625738 | MS.gene31841:CDS | 40.0% | |
ACTATCGCAAGAACATGGAT+GGG | + | chr1.1:14625720-14625739 | MS.gene31841:CDS | 40.0% | |
ACTATGGACGATGAATAGGT+TGG | + | chr1.1:14625655-14625674 | MS.gene31841:CDS | 40.0% | |
CAACATTCAACTCCAGCAAT+GGG | + | chr1.1:14625437-14625456 | MS.gene31841:CDS | 40.0% | |
CAGATCTTGATTGTGTCGAA+CGG | - | chr1.1:14624306-14624325 | None:intergenic | 40.0% | |
CGTCCATAGTAAATCATCAG+CGG | - | chr1.1:14625645-14625664 | None:intergenic | 40.0% | |
CTATGGACGATGAATAGGTT+GGG | + | chr1.1:14625656-14625675 | MS.gene31841:CDS | 40.0% | |
CTCAAGGAATTTATTGCCTC+GGG | + | chr1.1:14624523-14624542 | MS.gene31841:intron | 40.0% | |
GGGCAAGAATGATCTAACTT+GGG | + | chr1.1:14624543-14624562 | MS.gene31841:intron | 40.0% | |
TCAACGTTGGTCATCATCAT+TGG | - | chr1.1:14625771-14625790 | None:intergenic | 40.0% | |
TCAGTGATTATTGTGTCTGG+TGG | - | chr1.1:14625521-14625540 | None:intergenic | 40.0% | |
! | GAACGGTTGTTGTTAGATGA+GGG | - | chr1.1:14624289-14624308 | None:intergenic | 40.0% |
ACCAACAACAACACTGGCAT+TGG | + | chr1.1:14625404-14625423 | MS.gene31841:CDS | 45.0% | |
ACTCTTGTCACGTGACTGAT+GGG | - | chr1.1:14625482-14625501 | None:intergenic | 45.0% | |
AGGAACATGTTCGGTCTCTT+GGG | + | chr1.1:14625684-14625703 | MS.gene31841:CDS | 45.0% | |
AGTTAGATCATTCTTGCCCG+AGG | - | chr1.1:14624542-14624561 | None:intergenic | 45.0% | |
CCAACATTCAACTCCAGCAA+TGG | + | chr1.1:14625436-14625455 | MS.gene31841:CDS | 45.0% | |
CCATTGCTGGAGTTGAATGT+TGG | - | chr1.1:14625439-14625458 | None:intergenic | 45.0% | |
CGGGCAAGAATGATCTAACT+TGG | + | chr1.1:14624542-14624561 | MS.gene31841:intron | 45.0% | |
CGTTCGACACAATCAAGATC+TGG | + | chr1.1:14624304-14624323 | MS.gene31841:CDS | 45.0% | |
TAAGTGCAAGGTCACAAGTG+AGG | + | chr1.1:14625580-14625599 | MS.gene31841:CDS | 45.0% | |
! | AATGCCAGTGTTGTTGTTGG+TGG | - | chr1.1:14625405-14625424 | None:intergenic | 45.0% |
! | CGAACGGTTGTTGTTAGATG+AGG | - | chr1.1:14624290-14624309 | None:intergenic | 45.0% |
! | GATGAATAGGTTGGGCTTTG+AGG | + | chr1.1:14625664-14625683 | MS.gene31841:CDS | 45.0% |
! | TCCAATGCCAGTGTTGTTGT+TGG | - | chr1.1:14625408-14625427 | None:intergenic | 45.0% |
!! | GATGCTCTACATTGGCTTGT+TGG | - | chr1.1:14625610-14625629 | None:intergenic | 45.0% |
!! | TGGGCTTTGAGGAACATGTT+CGG | + | chr1.1:14625675-14625694 | MS.gene31841:CDS | 45.0% |
!! | TTAATTATAATAATTAATTC+AGG | + | chr1.1:14624918-14624937 | MS.gene31841:intron | 5.0% |
GACTCTTGTCACGTGACTGA+TGG | - | chr1.1:14625483-14625502 | None:intergenic | 50.0% | |
GAGGAACATGTTCGGTCTCT+TGG | + | chr1.1:14625683-14625702 | MS.gene31841:CDS | 50.0% | |
ACCGCCACCAACAACAACAC+TGG | + | chr1.1:14625398-14625417 | MS.gene31841:CDS | 55.0% | |
ATGGATGGGTCAGGTGCTAG+TGG | + | chr1.1:14625734-14625753 | MS.gene31841:CDS | 55.0% | |
CGCAAGAACATGGATGGGTC+AGG | + | chr1.1:14625725-14625744 | MS.gene31841:CDS | 55.0% | |
TTCAACTCCAGCAATGGGCG+AGG | + | chr1.1:14625442-14625461 | MS.gene31841:CDS | 55.0% | |
! | GCCAGTGTTGTTGTTGGTGG+CGG | - | chr1.1:14625402-14625421 | None:intergenic | 55.0% |
TGCACTTCCTCGCCCATTGC+TGG | - | chr1.1:14625452-14625471 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 14624271 | 14625790 | 14624271 | ID=MS.gene31841 |
chr1.1 | mRNA | 14624271 | 14625790 | 14624271 | ID=MS.gene31841.t1;Parent=MS.gene31841 |
chr1.1 | exon | 14624271 | 14624325 | 14624271 | ID=MS.gene31841.t1.exon1;Parent=MS.gene31841.t1 |
chr1.1 | CDS | 14624271 | 14624325 | 14624271 | ID=cds.MS.gene31841.t1;Parent=MS.gene31841.t1 |
chr1.1 | exon | 14625387 | 14625790 | 14625387 | ID=MS.gene31841.t1.exon2;Parent=MS.gene31841.t1 |
chr1.1 | CDS | 14625387 | 14625790 | 14625387 | ID=cds.MS.gene31841.t1;Parent=MS.gene31841.t1 |
Gene Sequence |
Protein sequence |