Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31888.t1 | XP_024630392.1 | 87 | 322 | 25 | 3 | 1 | 322 | 1 | 305 | 1.60E-152 | 548.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31888.t1 | Q84R27 | 33.3 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 6.1e-12 | 73.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31888.t1 | A0A396JU70 | 86.9 | 320 | 25 | 3 | 1 | 320 | 1 | 303 | 1.3e-151 | 545.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31888.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31888.t1 | MTR_4g119990 | 66.159 | 328 | 97 | 7 | 1 | 319 | 1 | 323 | 1.40e-144 | 412 |
MS.gene31888.t1 | MTR_6g043890 | 65.902 | 305 | 90 | 6 | 1 | 299 | 1 | 297 | 9.11e-134 | 384 |
MS.gene31888.t1 | MTR_1g035440 | 59.671 | 243 | 72 | 4 | 1 | 217 | 1 | 243 | 2.14e-76 | 234 |
MS.gene31888.t1 | MTR_3g098790 | 30.293 | 307 | 191 | 8 | 9 | 307 | 7 | 298 | 4.40e-33 | 125 |
MS.gene31888.t1 | MTR_5g044670 | 30.792 | 341 | 193 | 14 | 1 | 322 | 1 | 317 | 1.12e-32 | 124 |
MS.gene31888.t1 | MTR_7g050720 | 29.206 | 315 | 195 | 9 | 13 | 307 | 8 | 314 | 2.03e-31 | 120 |
MS.gene31888.t1 | MTR_1g108780 | 27.241 | 290 | 195 | 7 | 31 | 312 | 13 | 294 | 1.39e-30 | 120 |
MS.gene31888.t1 | MTR_1g035460 | 29.605 | 304 | 186 | 9 | 31 | 316 | 2 | 295 | 2.97e-30 | 118 |
MS.gene31888.t1 | MTR_3g061370 | 28.387 | 310 | 180 | 10 | 9 | 307 | 3 | 281 | 1.15e-29 | 114 |
MS.gene31888.t1 | MTR_7g050710 | 29.167 | 312 | 161 | 9 | 13 | 293 | 11 | 293 | 1.31e-29 | 115 |
MS.gene31888.t1 | MTR_7g050560 | 29.268 | 287 | 176 | 7 | 13 | 293 | 11 | 276 | 2.23e-29 | 114 |
MS.gene31888.t1 | MTR_8g103940 | 26.367 | 311 | 214 | 8 | 13 | 316 | 37 | 339 | 5.14e-29 | 116 |
MS.gene31888.t1 | MTR_3g061350 | 29.085 | 306 | 175 | 11 | 13 | 307 | 10 | 284 | 1.20e-28 | 112 |
MS.gene31888.t1 | MTR_3g061320 | 28.197 | 305 | 174 | 10 | 13 | 307 | 10 | 279 | 3.17e-28 | 110 |
MS.gene31888.t1 | MTR_1g035570 | 29.730 | 296 | 175 | 8 | 24 | 301 | 14 | 294 | 6.96e-28 | 112 |
MS.gene31888.t1 | MTR_6g061070 | 27.327 | 333 | 209 | 12 | 9 | 319 | 12 | 333 | 1.04e-27 | 112 |
MS.gene31888.t1 | MTR_3g061310 | 29.276 | 304 | 178 | 10 | 13 | 307 | 10 | 285 | 2.92e-27 | 108 |
MS.gene31888.t1 | MTR_1g035640 | 30.547 | 311 | 178 | 13 | 24 | 322 | 14 | 298 | 3.60e-27 | 111 |
MS.gene31888.t1 | MTR_3g061340 | 29.153 | 295 | 162 | 12 | 15 | 300 | 12 | 268 | 1.58e-26 | 106 |
MS.gene31888.t1 | MTR_7g050580 | 29.514 | 288 | 174 | 7 | 13 | 293 | 11 | 276 | 2.91e-26 | 106 |
MS.gene31888.t1 | MTR_3g061330 | 27.734 | 256 | 150 | 8 | 13 | 262 | 10 | 236 | 6.69e-24 | 98.6 |
MS.gene31888.t1 | MTR_1g033740 | 32.178 | 202 | 102 | 8 | 1 | 180 | 1 | 189 | 3.54e-22 | 92.4 |
MS.gene31888.t1 | MTR_1g035620 | 28.328 | 293 | 164 | 9 | 15 | 295 | 9 | 267 | 8.27e-22 | 95.5 |
MS.gene31888.t1 | MTR_7g050590 | 28.723 | 282 | 165 | 10 | 31 | 293 | 2 | 266 | 2.26e-21 | 92.4 |
MS.gene31888.t1 | MTR_1g035480 | 33.702 | 181 | 94 | 7 | 1 | 167 | 1 | 169 | 3.69e-21 | 89.4 |
MS.gene31888.t1 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 13 | 153 | 10 | 156 | 1.10e-20 | 88.6 |
MS.gene31888.t1 | MTR_1g050845 | 27.875 | 287 | 161 | 8 | 15 | 295 | 9 | 255 | 2.93e-20 | 92.0 |
MS.gene31888.t1 | MTR_1g035510 | 30.088 | 226 | 121 | 9 | 31 | 242 | 2 | 204 | 6.67e-20 | 87.0 |
MS.gene31888.t1 | MTR_1g035500 | 33.136 | 169 | 90 | 6 | 9 | 165 | 19 | 176 | 1.77e-19 | 85.1 |
MS.gene31888.t1 | MTR_3g005490 | 27.063 | 303 | 148 | 11 | 14 | 307 | 20 | 258 | 5.93e-19 | 85.1 |
MS.gene31888.t1 | MTR_1g021380 | 27.653 | 311 | 183 | 12 | 13 | 293 | 20 | 318 | 1.05e-16 | 80.1 |
MS.gene31888.t1 | MTR_3g005480 | 35.965 | 114 | 66 | 2 | 14 | 124 | 20 | 129 | 1.30e-16 | 78.6 |
MS.gene31888.t1 | MTR_5g070440 | 27.703 | 296 | 164 | 11 | 14 | 307 | 20 | 267 | 1.99e-16 | 78.2 |
MS.gene31888.t1 | MTR_1g035470 | 40.625 | 96 | 53 | 3 | 31 | 126 | 2 | 93 | 7.93e-16 | 73.6 |
MS.gene31888.t1 | MTR_3g005460 | 25.352 | 284 | 169 | 9 | 13 | 293 | 260 | 503 | 3.12e-15 | 76.6 |
MS.gene31888.t1 | MTR_3g005460 | 23.642 | 313 | 148 | 10 | 14 | 314 | 24 | 257 | 1.57e-13 | 71.6 |
MS.gene31888.t1 | MTR_1g035650 | 30.464 | 151 | 98 | 3 | 15 | 165 | 9 | 152 | 2.39e-14 | 71.2 |
MS.gene31888.t1 | MTR_3g005495 | 30.636 | 173 | 106 | 4 | 14 | 175 | 242 | 411 | 3.45e-14 | 73.2 |
MS.gene31888.t1 | MTR_3g005495 | 24.316 | 329 | 203 | 13 | 31 | 320 | 29 | 350 | 1.32e-11 | 65.5 |
MS.gene31888.t1 | MTR_1g021360 | 26.780 | 295 | 158 | 12 | 26 | 293 | 193 | 456 | 4.54e-14 | 73.2 |
MS.gene31888.t1 | MTR_1g021400 | 24.159 | 327 | 186 | 11 | 13 | 293 | 28 | 338 | 9.22e-13 | 68.6 |
MS.gene31888.t1 | MTR_3g005420 | 24.415 | 299 | 170 | 10 | 14 | 307 | 288 | 535 | 1.27e-12 | 68.6 |
MS.gene31888.t1 | MTR_3g061220 | 30.909 | 110 | 60 | 2 | 13 | 122 | 10 | 103 | 2.46e-11 | 60.5 |
MS.gene31888.t1 | MTR_4g068320 | 35.135 | 111 | 69 | 2 | 15 | 123 | 6 | 115 | 5.76e-11 | 63.5 |
MS.gene31888.t1 | MTR_1g021410 | 24.367 | 316 | 194 | 13 | 16 | 293 | 23 | 331 | 7.88e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31888.t1 | AT4G33280 | 24.620 | 329 | 197 | 8 | 13 | 315 | 23 | 326 | 3.42e-16 | 78.6 |
MS.gene31888.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 2.66e-14 | 71.2 |
MS.gene31888.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 3.03e-14 | 70.9 |
MS.gene31888.t1 | AT1G49475 | 36.036 | 111 | 69 | 2 | 15 | 125 | 34 | 142 | 6.44e-14 | 69.7 |
MS.gene31888.t1 | AT4G01580 | 31.532 | 111 | 75 | 1 | 5 | 115 | 20 | 129 | 3.56e-13 | 67.4 |
Find 30 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1.2:-20104274 | None:intergenic |
GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1.2:+20104359 | MS.gene31888:CDS |
TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 1.2:-20103130 | None:intergenic |
TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1.2:-20104470 | None:intergenic |
CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1.2:+20103401 | MS.gene31888:CDS |
CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1.2:+20103289 | MS.gene31888:CDS |
TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 1.2:+20103135 | MS.gene31888:CDS |
AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1.2:+20103661 | MS.gene31888:CDS |
TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1.2:+20103122 | MS.gene31888:CDS |
ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1.2:-20104355 | None:intergenic |
ATCAACTCGAATGAACAAAA+AGG | 0.376629 | 1.2:+20103469 | MS.gene31888:CDS |
GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1.2:-20104425 | None:intergenic |
TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1.2:-20104218 | None:intergenic |
TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1.2:-20103337 | None:intergenic |
TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1.2:+20104223 | MS.gene31888:CDS |
ATACATTGATAGAGATCTCT+TGG | 0.475972 | 1.2:+20103766 | MS.gene31888:CDS |
TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 1.2:+20103138 | MS.gene31888:CDS |
CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1.2:-20103433 | None:intergenic |
CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1.2:-20103336 | None:intergenic |
CAAGAAACATATGGACATGA+TGG | 0.508763 | 1.2:+20104232 | MS.gene31888:CDS |
TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1.2:-20103439 | None:intergenic |
TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1.2:+20103097 | MS.gene31888:CDS |
GAACATGATCATCAGAGTAA+TGG | 0.556374 | 1.2:+20102603 | MS.gene31888:CDS |
AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1.2:+20104324 | MS.gene31888:CDS |
AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1.2:+20104320 | MS.gene31888:CDS |
TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 1.2:-20103129 | None:intergenic |
AAACATATGGACATGATGGA+AGG | 0.599445 | 1.2:+20104236 | MS.gene31888:CDS |
GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1.2:+20103298 | MS.gene31888:CDS |
AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1.2:+20103488 | MS.gene31888:CDS |
GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1.2:+20103394 | MS.gene31888:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AACAATTTATGAAAATTTTA+TGG | + | chr1.2:20104546-20104565 | MS.gene31888:intron | 10.0% |
!!! | TATTTTTTGTCTTATTTTAT+AGG | + | chr1.2:20103591-20103610 | MS.gene31888:intron | 10.0% |
!! | AATATAAAAAAGTCTCATTA+TGG | - | chr1.2:20103981-20104000 | None:intergenic | 15.0% |
!! | GGAAATTCATTTAATATAAT+GGG | + | chr1.2:20104510-20104529 | MS.gene31888:intron | 15.0% |
!! | TATAATTTACCTTCAAAATA+AGG | - | chr1.2:20104473-20104492 | None:intergenic | 15.0% |
!!! | TGAAATTATTAATCTAAAAC+AGG | + | chr1.2:20104190-20104209 | MS.gene31888:intron | 15.0% |
!! | AAAATGTGATCTTATGATAT+TGG | + | chr1.2:20102873-20102892 | MS.gene31888:intron | 20.0% |
!! | AATAGTGATTGTTCAAATAT+AGG | + | chr1.2:20102917-20102936 | MS.gene31888:intron | 20.0% |
!! | AGAAAAACAATTTCTTCATT+AGG | - | chr1.2:20102825-20102844 | None:intergenic | 20.0% |
!! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1.2:20104277-20104296 | None:intergenic | 20.0% |
!! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1.2:20104358-20104377 | None:intergenic | 20.0% |
!! | CAAATATGCATTACAAAATT+TGG | + | chr1.2:20102721-20102740 | MS.gene31888:intron | 20.0% |
!! | CAATATAATAATTCATGTGT+TGG | + | chr1.2:20104591-20104610 | MS.gene31888:intron | 20.0% |
!! | CGGAAATTCATTTAATATAA+TGG | + | chr1.2:20104509-20104528 | MS.gene31888:intron | 20.0% |
!! | GAAAAACAATTTCTTCATTA+GGG | - | chr1.2:20102824-20102843 | None:intergenic | 20.0% |
!! | TATATTAAATGAATTTCCGA+TGG | - | chr1.2:20104508-20104527 | None:intergenic | 20.0% |
!! | TTCAAGATAAAGTAGTTAAA+TGG | - | chr1.2:20104174-20104193 | None:intergenic | 20.0% |
!! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1.2:20104276-20104295 | None:intergenic | 20.0% |
!!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1.2:20104359-20104378 | MS.gene31888:CDS | 20.0% |
!!! | TAAAATGTATGTGTATTGAT+AGG | + | chr1.2:20104136-20104155 | MS.gene31888:intron | 20.0% |
!!! | TGATCACTTTTATTTTTGAA+AGG | + | chr1.2:20103806-20103825 | MS.gene31888:intron | 20.0% |
!!! | TGTTGCTACTAATTTTTTTT+TGG | + | chr1.2:20103614-20103633 | MS.gene31888:intron | 20.0% |
!!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1.2:20104276-20104295 | MS.gene31888:CDS | 20.0% |
! | AAGTAGCTGTAATGATATTA+AGG | + | chr1.2:20103661-20103680 | MS.gene31888:CDS | 25.0% |
! | AGTCTCATTATGGTATAATT+TGG | - | chr1.2:20103971-20103990 | None:intergenic | 25.0% |
! | CAAAAAATTTCTTCACTTTC+TGG | - | chr1.2:20103706-20103725 | None:intergenic | 25.0% |
! | CTATTCTTTGATGAGATTAA+TGG | + | chr1.2:20103912-20103931 | MS.gene31888:intron | 25.0% |
! | CTCTTTAATGTGATTGTATT+CGG | + | chr1.2:20103289-20103308 | MS.gene31888:CDS | 25.0% |
! | GAAGAATAACCTTAAAAAAG+TGG | - | chr1.2:20102632-20102651 | None:intergenic | 25.0% |
! | GAGAAAATAACAACTTGAAA+TGG | - | chr1.2:20104428-20104447 | None:intergenic | 25.0% |
! | TATATTTGATTAGTGTCCAT+CGG | + | chr1.2:20104489-20104508 | MS.gene31888:intron | 25.0% |
! | TGAATTTGTCAAGAAACATA+TGG | + | chr1.2:20104223-20104242 | MS.gene31888:CDS | 25.0% |
! | TGCATATTGTGAAAAATCAA+GGG | - | chr1.2:20102703-20102722 | None:intergenic | 25.0% |
! | TGTTTCTTGACAAATTCATT+TGG | - | chr1.2:20104221-20104240 | None:intergenic | 25.0% |
! | TTGCATATTGTGAAAAATCA+AGG | - | chr1.2:20102704-20102723 | None:intergenic | 25.0% |
!! | ATACCTTTTCACAAAACTTA+TGG | - | chr1.2:20103092-20103111 | None:intergenic | 25.0% |
!! | TACCAATTTTTCTTCTTGAA+GGG | - | chr1.2:20102661-20102680 | None:intergenic | 25.0% |
!! | TACCTTTTCACAAAACTTAT+GGG | - | chr1.2:20103091-20103110 | None:intergenic | 25.0% |
!! | TATGATGTTACATTTTGCAA+TGG | + | chr1.2:20103193-20103212 | MS.gene31888:CDS | 25.0% |
!! | TTACCAATTTTTCTTCTTGA+AGG | - | chr1.2:20102662-20102681 | None:intergenic | 25.0% |
!! | TTTGAATGAATCGCAATTTT+TGG | + | chr1.2:20103243-20103262 | MS.gene31888:CDS | 25.0% |
!!! | GAATTCTCAATTTTTTTAGC+AGG | + | chr1.2:20103638-20103657 | MS.gene31888:intron | 25.0% |
!!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1.2:20103092-20103111 | MS.gene31888:CDS | 25.0% |
!!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1.2:20104430-20104449 | MS.gene31888:CDS | 25.0% |
!!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1.2:20104436-20104455 | MS.gene31888:CDS | 25.0% |
!!! | TTGAAAACTCCTTATTTTGA+AGG | + | chr1.2:20104461-20104480 | MS.gene31888:CDS | 25.0% |
AGTGATTGTTCAAATATAGG+TGG | + | chr1.2:20102920-20102939 | MS.gene31888:intron | 30.0% | |
ATACATTGATAGAGATCTCT+TGG | + | chr1.2:20103766-20103785 | MS.gene31888:CDS | 30.0% | |
ATCAACTCGAATGAACAAAA+AGG | + | chr1.2:20103469-20103488 | MS.gene31888:CDS | 30.0% | |
CCAATCACAATCTATTATGT+AGG | - | chr1.2:20104028-20104047 | None:intergenic | 30.0% | |
CCTACATAATAGATTGTGAT+TGG | + | chr1.2:20104025-20104044 | MS.gene31888:intron | 30.0% | |
TACCCTTCAAGAAGAAAAAT+TGG | + | chr1.2:20102656-20102675 | MS.gene31888:CDS | 30.0% | |
TTCTTACACACTTTCATAGA+CGG | - | chr1.2:20103442-20103461 | None:intergenic | 30.0% | |
! | ATGTTACATTTTGCAATGGT+TGG | + | chr1.2:20103197-20103216 | MS.gene31888:CDS | 30.0% |
!! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1.2:20104389-20104408 | MS.gene31888:CDS | 30.0% |
!! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1.2:20103097-20103116 | MS.gene31888:CDS | 30.0% |
!!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1.2:20103156-20103175 | MS.gene31888:CDS | 30.0% |
!!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1.2:20102620-20102639 | MS.gene31888:CDS | 30.0% |
!!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1.2:20103155-20103174 | MS.gene31888:CDS | 30.0% |
AAACAATCTGCACTAACTTG+TGG | + | chr1.2:20104320-20104339 | MS.gene31888:CDS | 35.0% | |
CAAGAAACATATGGACATGA+TGG | + | chr1.2:20104232-20104251 | MS.gene31888:CDS | 35.0% | |
GAACATGATCATCAGAGTAA+TGG | + | chr1.2:20102603-20102622 | MS.gene31888:CDS | 35.0% | |
GTGATTGTATTCGGTAAATG+CGG | + | chr1.2:20103298-20103317 | MS.gene31888:CDS | 35.0% | |
TAACAAACCCAGTTACTCTA+AGG | + | chr1.2:20103122-20103141 | MS.gene31888:CDS | 35.0% | |
TTGGAAACCTTAGAGTAACT+GGG | - | chr1.2:20103132-20103151 | None:intergenic | 35.0% | |
TTTGGAAACCTTAGAGTAAC+TGG | - | chr1.2:20103133-20103152 | None:intergenic | 35.0% | |
! | AAACATATGGACATGATGGA+AGG | + | chr1.2:20104236-20104255 | MS.gene31888:CDS | 35.0% |
! | ACTTTCTTTTCCACCAAGTT+TGG | - | chr1.2:20103151-20103170 | None:intergenic | 35.0% |
! | CTTCACTAGTTTCTCTTGAA+GGG | - | chr1.2:20103339-20103358 | None:intergenic | 35.0% |
! | TCTTCACTAGTTTCTCTTGA+AGG | - | chr1.2:20103340-20103359 | None:intergenic | 35.0% |
!! | GTTTTTGAGCATGTGAACAA+TGG | + | chr1.2:20103529-20103548 | MS.gene31888:CDS | 35.0% |
!! | TACTCTAAGGTTTCCAAACT+TGG | + | chr1.2:20103135-20103154 | MS.gene31888:CDS | 35.0% |
!! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1.2:20103086-20103105 | MS.gene31888:CDS | 35.0% |
AAGGATCTAAGCATGAGAAG+AGG | + | chr1.2:20103488-20103507 | MS.gene31888:CDS | 40.0% | |
TTGAGCATGTGAACAATGGT+TGG | + | chr1.2:20103533-20103552 | MS.gene31888:intron | 40.0% | |
! | AATCTGCACTAACTTGTGGT+TGG | + | chr1.2:20104324-20104343 | MS.gene31888:CDS | 40.0% |
! | TCATGTGTTGGTCTATTGCA+GGG | + | chr1.2:20104603-20104622 | MS.gene31888:intron | 40.0% |
! | TCTAAGGTTTCCAAACTTGG+TGG | + | chr1.2:20103138-20103157 | MS.gene31888:CDS | 40.0% |
! | TTCATGTGTTGGTCTATTGC+AGG | + | chr1.2:20104602-20104621 | MS.gene31888:intron | 40.0% |
ATTAGGGCTGCATCCAACAA+AGG | - | chr1.2:20102808-20102827 | None:intergenic | 45.0% | |
CTTCATCATCACGCGGTAAA+AGG | + | chr1.2:20103401-20103420 | MS.gene31888:CDS | 45.0% | |
GAGAATCCTTCATCATCACG+CGG | + | chr1.2:20103394-20103413 | MS.gene31888:CDS | 45.0% | |
! | CATCCAACAAAGGCTAGCTA+GGG | - | chr1.2:20102798-20102817 | None:intergenic | 45.0% |
!! | CTTTTACCGCGTGATGATGA+AGG | - | chr1.2:20103403-20103422 | None:intergenic | 45.0% |
CACACTTTCATAGACGGTGC+TGG | - | chr1.2:20103436-20103455 | None:intergenic | 50.0% | |
! | GCATCCAACAAAGGCTAGCT+AGG | - | chr1.2:20102799-20102818 | None:intergenic | 50.0% |
! | GTGTTGGTCTATTGCAGGGT+TGG | + | chr1.2:20104607-20104626 | MS.gene31888:intron | 50.0% |
!! | CATCCCTAGCTAGCCTTTGT+TGG | + | chr1.2:20102792-20102811 | MS.gene31888:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 20102591 | 20104634 | 20102591 | ID=MS.gene31888 |
chr1.2 | mRNA | 20102591 | 20104634 | 20102591 | ID=MS.gene31888.t1;Parent=MS.gene31888 |
chr1.2 | exon | 20102591 | 20102677 | 20102591 | ID=MS.gene31888.t1.exon1;Parent=MS.gene31888.t1 |
chr1.2 | CDS | 20102591 | 20102677 | 20102591 | ID=cds.MS.gene31888.t1;Parent=MS.gene31888.t1 |
chr1.2 | exon | 20103082 | 20103550 | 20103082 | ID=MS.gene31888.t1.exon2;Parent=MS.gene31888.t1 |
chr1.2 | CDS | 20103082 | 20103550 | 20103082 | ID=cds.MS.gene31888.t1;Parent=MS.gene31888.t1 |
chr1.2 | exon | 20103657 | 20103787 | 20103657 | ID=MS.gene31888.t1.exon3;Parent=MS.gene31888.t1 |
chr1.2 | CDS | 20103657 | 20103787 | 20103657 | ID=cds.MS.gene31888.t1;Parent=MS.gene31888.t1 |
chr1.2 | exon | 20104212 | 20104482 | 20104212 | ID=MS.gene31888.t1.exon4;Parent=MS.gene31888.t1 |
chr1.2 | CDS | 20104212 | 20104482 | 20104212 | ID=cds.MS.gene31888.t1;Parent=MS.gene31888.t1 |
chr1.2 | exon | 20104624 | 20104634 | 20104624 | ID=MS.gene31888.t1.exon5;Parent=MS.gene31888.t1 |
chr1.2 | CDS | 20104624 | 20104634 | 20104624 | ID=cds.MS.gene31888.t1;Parent=MS.gene31888.t1 |
Gene Sequence |
Protein sequence |