Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31893.t1 | RHN78223.1 | 62.2 | 357 | 62 | 3 | 1 | 288 | 1 | 353 | 9.80E-93 | 350.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31893.t1 | Q2R9D2 | 27.8 | 158 | 104 | 4 | 81 | 237 | 252 | 400 | 7.0e-07 | 56.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31893.t1 | A0A396JPN4 | 62.2 | 357 | 62 | 3 | 1 | 288 | 1 | 353 | 7.0e-93 | 350.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31893.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31893.t1 | MTR_1g035490 | 65.251 | 259 | 64 | 7 | 35 | 288 | 15 | 252 | 3.29e-97 | 289 |
MS.gene31893.t1 | MTR_1g035570 | 59.058 | 276 | 60 | 5 | 20 | 288 | 89 | 318 | 5.77e-88 | 268 |
MS.gene31893.t1 | MTR_1g035640 | 44.275 | 262 | 118 | 3 | 20 | 275 | 89 | 328 | 7.99e-63 | 205 |
MS.gene31893.t1 | MTR_1g035620 | 37.770 | 278 | 127 | 10 | 20 | 288 | 93 | 333 | 7.47e-37 | 135 |
MS.gene31893.t1 | MTR_1g050845 | 37.184 | 277 | 117 | 9 | 20 | 288 | 93 | 320 | 8.42e-32 | 125 |
MS.gene31893.t1 | MTR_6g061070 | 32.602 | 319 | 162 | 13 | 1 | 285 | 89 | 388 | 1.17e-28 | 114 |
MS.gene31893.t1 | MTR_1g035650 | 37.681 | 138 | 50 | 3 | 20 | 148 | 93 | 203 | 4.01e-16 | 75.9 |
MS.gene31893.t1 | MTR_3g098790 | 29.730 | 222 | 130 | 9 | 20 | 232 | 99 | 303 | 2.13e-13 | 69.7 |
MS.gene31893.t1 | MTR_8g103940 | 27.468 | 233 | 143 | 9 | 10 | 228 | 111 | 331 | 3.08e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 48 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGGGCTTGGTTTGTTTA+TGG | 0.106740 | 1.1:+19803240 | None:intergenic |
TTCATCAACTGATTTGATAT+TGG | 0.273749 | 1.1:+19804275 | None:intergenic |
TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1.1:-19803441 | MS.gene31893:CDS |
AGAAAACCTAGTGATTTCTT+TGG | 0.292191 | 1.1:+19803223 | None:intergenic |
TTATGCCAATGGCTATTTCT+TGG | 0.296975 | 1.1:-19803606 | MS.gene31893:intron |
CATTAACAGCTTCAGATGTT+AGG | 0.318603 | 1.1:+19803663 | None:intergenic |
ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1.1:+19803271 | None:intergenic |
AGAGGAATACCCTTTACTTT+TGG | 0.325176 | 1.1:+19803036 | None:intergenic |
GAAAACCTAGTGATTTCTTT+GGG | 0.344669 | 1.1:+19803224 | None:intergenic |
AATACATTGGAGGAACTTCT+AGG | 0.369677 | 1.1:-19803065 | MS.gene31893:CDS |
CCTAGTGATTTCTTTGGGCT+TGG | 0.374297 | 1.1:+19803229 | None:intergenic |
TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1.1:-19803440 | MS.gene31893:CDS |
TGGCAAGAGAAAATTGAGTA+TGG | 0.397583 | 1.1:-19804100 | MS.gene31893:CDS |
ATAATTTATTTCTAAAGTAT+TGG | 0.398912 | 1.1:+19804299 | None:intergenic |
CATGTCATTTCAATATGTTC+CGG | 0.405450 | 1.1:-19804703 | MS.gene31893:CDS |
GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1.1:-19803351 | MS.gene31893:CDS |
GAAGTGAGTTTGAGGTATTA+TGG | 0.438938 | 1.1:-19803397 | MS.gene31893:CDS |
AAGATTATCCTATGAAAATC+CGG | 0.460649 | 1.1:+19804684 | None:intergenic |
AGGAGCAATCCAAAAGTAAA+GGG | 0.465257 | 1.1:-19803045 | MS.gene31893:intron |
CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 1.1:-19803696 | MS.gene31893:CDS |
TAGGAGCAATCCAAAAGTAA+AGG | 0.471733 | 1.1:-19803046 | MS.gene31893:CDS |
AGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.1:+19803634 | None:intergenic |
TGGTAAGAGTGTTGTAAAGA+AGG | 0.487696 | 1.1:-19803088 | MS.gene31893:CDS |
GGAGTGTGGAAGTGAGTTTG+AGG | 0.490380 | 1.1:-19803405 | MS.gene31893:CDS |
CCAACTAAAATGATAACAAA+TGG | 0.498116 | 1.1:-19804120 | MS.gene31893:CDS |
CTCTTCATGACTTTCTTCTG+TGG | 0.498976 | 1.1:+19804191 | None:intergenic |
GTCATTATAACTTCAAAAGA+GGG | 0.501493 | 1.1:+19803635 | None:intergenic |
ACCACCCAACCAAAATTCTC+AGG | 0.510316 | 1.1:-19804069 | MS.gene31893:intron |
TTTCGTGAAGAGCAAAATCC+CGG | 0.533808 | 1.1:-19802622 | MS.gene31893:CDS |
GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1.1:-19802646 | MS.gene31893:CDS |
AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1.1:-19804273 | MS.gene31893:CDS |
CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1.1:-19803426 | MS.gene31893:CDS |
CCAAGCCCAAAGAAATCACT+AGG | 0.556666 | 1.1:-19803229 | MS.gene31893:intron |
GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1.1:-19803297 | MS.gene31893:CDS |
AATATGGTATGGGTGGTGGA+TGG | 0.557585 | 1.1:-19803363 | MS.gene31893:CDS |
GTTGTAAAGAAGGAATACAT+TGG | 0.559317 | 1.1:-19803078 | MS.gene31893:CDS |
TGTTCTCTTGAAAACTCACT+TGG | 0.561927 | 1.1:+19803475 | None:intergenic |
TACAGAAGGTCGTGATGTGA+AGG | 0.563378 | 1.1:-19802664 | MS.gene31893:intron |
GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1.1:-19803436 | MS.gene31893:CDS |
TGATGACAGTTCAGATGAGG+TGG | 0.583984 | 1.1:-19804154 | MS.gene31893:CDS |
ATGACTCAATCTTATGCCAA+TGG | 0.587654 | 1.1:-19803617 | MS.gene31893:CDS |
GTAAAGAAGGAATACATTGG+AGG | 0.598202 | 1.1:-19803075 | MS.gene31893:CDS |
AGGTAGTAACAAAGTAGCCA+TGG | 0.603454 | 1.1:-19803705 | MS.gene31893:CDS |
ACTTACCAAGAAATAGCCAT+TGG | 0.604417 | 1.1:+19803601 | None:intergenic |
GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1.1:-19803419 | MS.gene31893:CDS |
TTTATGTAATTAATCCTACC+GGG | 0.623330 | 1.1:+19802604 | None:intergenic |
GTGAAGAGCAAAATCCCGGT+AGG | 0.642997 | 1.1:-19802618 | MS.gene31893:CDS |
AAGTGATGACAGTTCAGATG+AGG | 0.649994 | 1.1:-19804157 | MS.gene31893:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAATATGTGATTTTTTTT+TGG | - | chr1.1:19803452-19803471 | MS.gene31893:CDS | 10.0% |
!!! | AATATTTGTAACTTTTAATT+TGG | - | chr1.1:19804339-19804358 | MS.gene31893:intron | 10.0% |
!!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1.1:19803011-19803030 | None:intergenic | 10.0% |
!!! | CAAATATATCTAAATTTTTT+GGG | - | chr1.1:19804577-19804596 | MS.gene31893:intron | 10.0% |
!!! | TCAAATATATCTAAATTTTT+TGG | - | chr1.1:19804576-19804595 | MS.gene31893:intron | 10.0% |
!! | AAAAACATTAAAAAAGTTAG+AGG | + | chr1.1:19804292-19804311 | None:intergenic | 15.0% |
!! | AAACTTATGAATGATTTATA+AGG | - | chr1.1:19804367-19804386 | MS.gene31893:intron | 15.0% |
!! | ATTTGAATAGATTTATAGTT+AGG | + | chr1.1:19804562-19804581 | None:intergenic | 15.0% |
!! | TAAAAAATATTTCAATTCAC+AGG | + | chr1.1:19804443-19804462 | None:intergenic | 15.0% |
!!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1.1:19802897-19802916 | MS.gene31893:intron | 15.0% |
!!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1.1:19802898-19802917 | MS.gene31893:intron | 15.0% |
!!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1.1:19802983-19803002 | MS.gene31893:intron | 15.0% |
!!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1.1:19802859-19802878 | MS.gene31893:intron | 15.0% |
!!! | TTAGATTTTATTATTGTAGA+GGG | - | chr1.1:19804310-19804329 | MS.gene31893:CDS | 15.0% |
!!! | TTCTTTCTTTCTTTTTTATT+TGG | - | chr1.1:19804103-19804122 | MS.gene31893:CDS | 15.0% |
!!! | TTTAGATTTTATTATTGTAG+AGG | - | chr1.1:19804309-19804328 | MS.gene31893:CDS | 15.0% |
!! | ATAGTAACATTGAATGAAAT+TGG | + | chr1.1:19804039-19804058 | None:intergenic | 20.0% |
!! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1.1:19802836-19802855 | MS.gene31893:intron | 20.0% |
!! | TTGGAAATTTAAGGAATATA+GGG | + | chr1.1:19802835-19802854 | None:intergenic | 20.0% |
!! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1.1:19802836-19802855 | None:intergenic | 20.0% |
!!! | ATATGTGATTTTTTTTTGGT+AGG | - | chr1.1:19803456-19803475 | MS.gene31893:CDS | 20.0% |
!!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1.1:19802858-19802877 | MS.gene31893:intron | 20.0% |
!!! | TTCTTTTTTTATCCATTACA+AGG | - | chr1.1:19804175-19804194 | MS.gene31893:CDS | 20.0% |
! | AAATAGTTAATGCCTAAACT+TGG | - | chr1.1:19803578-19803597 | MS.gene31893:intron | 25.0% |
! | AAGATTATCCTATGAAAATC+CGG | + | chr1.1:19802626-19802645 | None:intergenic | 25.0% |
! | ACCAAGAAAAAATATGGTAT+GGG | - | chr1.1:19803934-19803953 | MS.gene31893:intron | 25.0% |
! | AGATATATGTGGAGAAATAT+TGG | - | chr1.1:19802795-19802814 | MS.gene31893:intron | 25.0% |
! | AGTCATTATAACTTCAAAAG+AGG | + | chr1.1:19803676-19803695 | None:intergenic | 25.0% |
! | ATTACAAGGTCATAAAAAAG+GGG | - | chr1.1:19804189-19804208 | MS.gene31893:CDS | 25.0% |
! | CATTACAAGGTCATAAAAAA+GGG | - | chr1.1:19804188-19804207 | MS.gene31893:CDS | 25.0% |
! | CCAACTAAAATGATAACAAA+TGG | - | chr1.1:19803187-19803206 | MS.gene31893:intron | 25.0% |
! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1.1:19802953-19802972 | MS.gene31893:intron | 25.0% |
! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.1:19803675-19803694 | None:intergenic | 25.0% |
! | TAAAAGAAGAAACTGAAAAC+TGG | + | chr1.1:19804531-19804550 | None:intergenic | 25.0% |
! | TATTTCTCCACATATATCTT+AGG | + | chr1.1:19802794-19802813 | None:intergenic | 25.0% |
! | TTAACTTTCAAATTCATTGG+TGG | - | chr1.1:19802956-19802975 | MS.gene31893:intron | 25.0% |
! | TTTGCAAAGTCTTTCAAATA+TGG | - | chr1.1:19802926-19802945 | MS.gene31893:intron | 25.0% |
!! | GAACACTTGAAAGATTTTAA+TGG | - | chr1.1:19803850-19803869 | MS.gene31893:intron | 25.0% |
!! | TAAACCATTATTTGAAACAG+TGG | - | chr1.1:19803806-19803825 | MS.gene31893:intron | 25.0% |
!!! | AATATCAAATCAGTTGATGA+AGG | - | chr1.1:19803034-19803053 | MS.gene31893:intron | 25.0% |
!!! | CCATTTGTTATCATTTTAGT+TGG | + | chr1.1:19803190-19803209 | None:intergenic | 25.0% |
!!! | GTGATTTTTCTCTCATTTTT+TGG | - | chr1.1:19803260-19803279 | MS.gene31893:CDS | 25.0% |
!!! | TACTTTTAAGAGTTATGCAA+TGG | - | chr1.1:19803348-19803367 | MS.gene31893:CDS | 25.0% |
!!! | TCTCATTTTTTGGTAGATTT+AGG | - | chr1.1:19803270-19803289 | MS.gene31893:CDS | 25.0% |
!!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1.1:19802862-19802881 | MS.gene31893:intron | 25.0% |
!!! | TTCATCAACTGATTTGATAT+TGG | + | chr1.1:19803035-19803054 | None:intergenic | 25.0% |
AACTGAAAACTGGATAAGTT+AGG | + | chr1.1:19804521-19804540 | None:intergenic | 30.0% | |
AAGAAAAAATATGGTATGGG+TGG | - | chr1.1:19803937-19803956 | MS.gene31893:intron | 30.0% | |
AGAAAACCTAGTGATTTCTT+TGG | + | chr1.1:19804087-19804106 | None:intergenic | 30.0% | |
CACCAAGAAAAAATATGGTA+TGG | - | chr1.1:19803933-19803952 | MS.gene31893:intron | 30.0% | |
CCATTACAAGGTCATAAAAA+AGG | - | chr1.1:19804187-19804206 | MS.gene31893:CDS | 30.0% | |
CTGAATTTCTTTATTGCAGA+GGG | - | chr1.1:19802766-19802785 | MS.gene31893:intron | 30.0% | |
GAAAACCTAGTGATTTCTTT+GGG | + | chr1.1:19804086-19804105 | None:intergenic | 30.0% | |
GTATCCACTGTTTCAAATAA+TGG | + | chr1.1:19803813-19803832 | None:intergenic | 30.0% | |
GTTGTAAAGAAGGAATACAT+TGG | - | chr1.1:19804229-19804248 | MS.gene31893:CDS | 30.0% | |
TAATGGAACTGCAACAATAA+GGG | - | chr1.1:19803867-19803886 | MS.gene31893:intron | 30.0% | |
TATGGCACCAAGAAAAAATA+TGG | - | chr1.1:19803928-19803947 | MS.gene31893:intron | 30.0% | |
TATGTGGAGAAATATTGGAA+AGG | - | chr1.1:19802800-19802819 | MS.gene31893:intron | 30.0% | |
TCTGAATTTCTTTATTGCAG+AGG | - | chr1.1:19802765-19802784 | MS.gene31893:intron | 30.0% | |
TTAATGGAACTGCAACAATA+AGG | - | chr1.1:19803866-19803885 | MS.gene31893:intron | 30.0% | |
! | AATATGTTCCGGATTTTCAT+AGG | - | chr1.1:19802615-19802634 | MS.gene31893:CDS | 30.0% |
! | GAAAAATCACCTGAGAATTT+TGG | + | chr1.1:19803250-19803269 | None:intergenic | 30.0% |
! | GTAAATTTGAGATGATTCGA+CGG | - | chr1.1:19804010-19804029 | MS.gene31893:intron | 30.0% |
! | GTTGCAATTTTATGTCTGAA+AGG | - | chr1.1:19803374-19803393 | MS.gene31893:CDS | 30.0% |
!! | CATTGGTGGATCATATTTTA+AGG | - | chr1.1:19802970-19802989 | MS.gene31893:intron | 30.0% |
!!! | ACCCATACCATATTTTTTCT+TGG | + | chr1.1:19803938-19803957 | None:intergenic | 30.0% |
!!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1.1:19802854-19802873 | None:intergenic | 30.0% |
!!! | CCTTTTTTATGACCTTGTAA+TGG | + | chr1.1:19804190-19804209 | None:intergenic | 30.0% |
!!! | GTTATCATTTTAGTTGGCTT+TGG | + | chr1.1:19803184-19803203 | None:intergenic | 30.0% |
AAAAAATATGGTATGGGTGG+TGG | - | chr1.1:19803940-19803959 | MS.gene31893:intron | 35.0% | |
AATACATTGGAGGAACTTCT+AGG | - | chr1.1:19804242-19804261 | MS.gene31893:CDS | 35.0% | |
ACTTACCAAGAAATAGCCAT+TGG | + | chr1.1:19803709-19803728 | None:intergenic | 35.0% | |
AGGAGCAATCCAAAAGTAAA+GGG | - | chr1.1:19804262-19804281 | MS.gene31893:CDS | 35.0% | |
ATGACTCAATCTTATGCCAA+TGG | - | chr1.1:19803690-19803709 | MS.gene31893:CDS | 35.0% | |
CAACACCGTTTGGAAATTTA+AGG | + | chr1.1:19802844-19802863 | None:intergenic | 35.0% | |
CATTAACAGCTTCAGATGTT+AGG | + | chr1.1:19803647-19803666 | None:intergenic | 35.0% | |
GTAAAGAAGGAATACATTGG+AGG | - | chr1.1:19804232-19804251 | MS.gene31893:CDS | 35.0% | |
TAGGAGCAATCCAAAAGTAA+AGG | - | chr1.1:19804261-19804280 | MS.gene31893:CDS | 35.0% | |
TGGAGAGTAATGGTGATATT+TGG | - | chr1.1:19802882-19802901 | MS.gene31893:intron | 35.0% | |
TGGCAAGAGAAAATTGAGTA+TGG | - | chr1.1:19803207-19803226 | MS.gene31893:intron | 35.0% | |
TGTGTTTATGCATGTACAGA+AGG | - | chr1.1:19804629-19804648 | MS.gene31893:intron | 35.0% | |
TGTTCTCTTGAAAACTCACT+TGG | + | chr1.1:19803835-19803854 | None:intergenic | 35.0% | |
! | AGAGGAATACCCTTTACTTT+TGG | + | chr1.1:19804274-19804293 | None:intergenic | 35.0% |
! | GAAGTGAGTTTGAGGTATTA+TGG | - | chr1.1:19803910-19803929 | MS.gene31893:intron | 35.0% |
!! | AATCACCTGAGAATTTTGGT+TGG | + | chr1.1:19803246-19803265 | None:intergenic | 35.0% |
!! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1.1:19802872-19802891 | MS.gene31893:intron | 35.0% |
!! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1.1:19803881-19803900 | MS.gene31893:intron | 35.0% |
!! | TGGTAAGAGTGTTGTAAAGA+AGG | - | chr1.1:19804219-19804238 | MS.gene31893:CDS | 35.0% |
!! | TTATGCCAATGGCTATTTCT+TGG | - | chr1.1:19803701-19803720 | MS.gene31893:CDS | 35.0% |
!!! | ATCACCTGAGAATTTTGGTT+GGG | + | chr1.1:19803245-19803264 | None:intergenic | 35.0% |
AAGTGATGACAGTTCAGATG+AGG | - | chr1.1:19803150-19803169 | MS.gene31893:intron | 40.0% | |
AGGTAGTAACAAAGTAGCCA+TGG | - | chr1.1:19803602-19803621 | MS.gene31893:intron | 40.0% | |
AGTTAATGCCTAAACTTGGC+AGG | - | chr1.1:19803582-19803601 | MS.gene31893:intron | 40.0% | |
CATAAAAAAGGGGTCTCTTG+TGG | - | chr1.1:19804199-19804218 | MS.gene31893:CDS | 40.0% | |
CTCTTCATGACTTTCTTCTG+TGG | + | chr1.1:19803119-19803138 | None:intergenic | 40.0% | |
GAGGGTTCCTAAGATATATG+TGG | - | chr1.1:19802784-19802803 | MS.gene31893:intron | 40.0% | |
TGTTACTACCTGCCAAGTTT+AGG | + | chr1.1:19803593-19803612 | None:intergenic | 40.0% | |
TTTCGTGAAGAGCAAAATCC+CGG | - | chr1.1:19804685-19804704 | MS.gene31893:CDS | 40.0% | |
!! | CTTTGGGCTTGGTTTGTTTA+TGG | + | chr1.1:19804070-19804089 | None:intergenic | 40.0% |
!! | GTGGTGGATGGAAAATATTC+AGG | - | chr1.1:19803956-19803975 | MS.gene31893:intron | 40.0% |
!! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1.1:19803622-19803641 | None:intergenic | 40.0% |
ACCACCCAACCAAAATTCTC+AGG | - | chr1.1:19803238-19803257 | MS.gene31893:CDS | 45.0% | |
CAAAGTAGCCATGGTGAAGA+AGG | - | chr1.1:19803611-19803630 | MS.gene31893:CDS | 45.0% | |
CCAAGCCCAAAGAAATCACT+AGG | - | chr1.1:19804078-19804097 | MS.gene31893:CDS | 45.0% | |
CCTAGTGATTTCTTTGGGCT+TGG | + | chr1.1:19804081-19804100 | None:intergenic | 45.0% | |
GGAACTGCAACAATAAGGGT+TGG | - | chr1.1:19803871-19803890 | MS.gene31893:intron | 45.0% | |
TACAGAAGGTCGTGATGTGA+AGG | - | chr1.1:19804643-19804662 | MS.gene31893:intron | 45.0% | |
TGATGACAGTTCAGATGAGG+TGG | - | chr1.1:19803153-19803172 | MS.gene31893:intron | 45.0% | |
! | GAAGGAGCACAAGACATTCA+AGG | - | chr1.1:19804661-19804680 | MS.gene31893:intron | 45.0% |
!! | AATATGGTATGGGTGGTGGA+TGG | - | chr1.1:19803944-19803963 | MS.gene31893:intron | 45.0% |
!! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1.1:19803888-19803907 | MS.gene31893:intron | 45.0% |
!!! | ACCTGAGAATTTTGGTTGGG+TGG | + | chr1.1:19803242-19803261 | None:intergenic | 45.0% |
!! | AAAAATAATAAATACTTAAT+TGG | - | chr1.1:19803509-19803528 | MS.gene31893:intron | 5.0% |
GGAGTGTGGAAGTGAGTTTG+AGG | - | chr1.1:19803902-19803921 | MS.gene31893:intron | 50.0% | |
GTGAAGAGCAAAATCCCGGT+AGG | - | chr1.1:19804689-19804708 | MS.gene31893:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 19802605 | 19804724 | 19802605 | ID=MS.gene31893 |
chr1.1 | mRNA | 19802605 | 19804724 | 19802605 | ID=MS.gene31893.t1;Parent=MS.gene31893 |
chr1.1 | exon | 19804668 | 19804724 | 19804668 | ID=MS.gene31893.t1.exon1;Parent=MS.gene31893.t1 |
chr1.1 | CDS | 19804668 | 19804724 | 19804668 | ID=cds.MS.gene31893.t1;Parent=MS.gene31893.t1 |
chr1.1 | exon | 19804070 | 19804337 | 19804070 | ID=MS.gene31893.t1.exon2;Parent=MS.gene31893.t1 |
chr1.1 | CDS | 19804070 | 19804337 | 19804070 | ID=cds.MS.gene31893.t1;Parent=MS.gene31893.t1 |
chr1.1 | exon | 19803607 | 19803725 | 19803607 | ID=MS.gene31893.t1.exon3;Parent=MS.gene31893.t1 |
chr1.1 | CDS | 19803607 | 19803725 | 19803607 | ID=cds.MS.gene31893.t1;Parent=MS.gene31893.t1 |
chr1.1 | exon | 19803230 | 19803503 | 19803230 | ID=MS.gene31893.t1.exon4;Parent=MS.gene31893.t1 |
chr1.1 | CDS | 19803230 | 19803503 | 19803230 | ID=cds.MS.gene31893.t1;Parent=MS.gene31893.t1 |
chr1.1 | exon | 19803046 | 19803132 | 19803046 | ID=MS.gene31893.t1.exon5;Parent=MS.gene31893.t1 |
chr1.1 | CDS | 19803046 | 19803132 | 19803046 | ID=cds.MS.gene31893.t1;Parent=MS.gene31893.t1 |
chr1.1 | exon | 19802605 | 19802681 | 19802605 | ID=MS.gene31893.t1.exon6;Parent=MS.gene31893.t1 |
chr1.1 | CDS | 19802605 | 19802681 | 19802605 | ID=cds.MS.gene31893.t1;Parent=MS.gene31893.t1 |
Gene Sequence |
Protein sequence |