AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31898

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31898.t1 MTR_1g035420 97.876 659 12 2 1 657 1 659 0.0 1335
MS.gene31898.t1 MTR_1g035400 82.129 526 85 3 141 657 53 578 0.0 872
MS.gene31898.t1 MTR_8g070070 73.673 471 120 3 189 656 299 768 0.0 746
MS.gene31898.t1 MTR_8g070070 36.975 119 61 4 100 212 148 258 1.50e-11 68.2
MS.gene31898.t1 MTR_8g071030 58.775 604 194 7 101 656 152 748 0.0 716
MS.gene31898.t1 MTR_8g070075 57.605 618 192 9 99 653 148 758 0.0 712
MS.gene31898.t1 MTR_6g044690 57.317 574 199 12 103 644 5 564 0.0 629
MS.gene31898.t1 MTR_0376s0030 55.077 581 215 10 110 657 11 578 0.0 608
MS.gene31898.t1 MTR_6g043960 54.669 514 174 10 158 644 1 482 0.0 528
MS.gene31898.t1 MTR_2g054460 51.923 520 165 12 151 644 4 464 9.70e-171 496
MS.gene31898.t1 MTR_7g088370 41.818 495 265 13 156 644 203 680 1.28e-113 357
MS.gene31898.t1 MTR_3g011440 36.929 547 310 14 121 643 98 633 1.27e-107 340
MS.gene31898.t1 MTR_5g013420 38.569 503 282 12 156 649 581 1065 1.08e-106 348
MS.gene31898.t1 MTR_5g013420 38.569 503 282 12 156 649 581 1065 1.47e-106 347
MS.gene31898.t1 MTR_8g042750 39.960 503 279 14 156 645 167 659 3.94e-105 334
MS.gene31898.t1 MTR_4g010830 37.302 504 286 11 156 649 473 956 7.17e-100 327
MS.gene31898.t1 MTR_4g010550 37.161 479 237 14 182 649 15 440 3.17e-91 291
MS.gene31898.t1 MTR_6g061270 38.716 483 268 13 187 649 196 670 1.33e-89 293
MS.gene31898.t1 MTR_7g084090 38.763 485 266 14 187 649 258 733 3.96e-88 291
MS.gene31898.t1 MTR_6g061200 37.053 475 258 14 187 649 196 641 9.17e-81 269
MS.gene31898.t1 MTR_7g084090 41.551 361 190 11 187 533 258 611 3.74e-71 243
MS.gene31898.t1 MTR_1g048950 32.341 504 285 12 155 642 44 507 7.49e-58 205
MS.gene31898.t1 MTR_7g445710 30.103 485 237 16 190 648 110 518 1.19e-52 190
MS.gene31898.t1 MTR_7g445530 30.063 479 233 16 190 642 110 512 3.91e-52 188
MS.gene31898.t1 MTR_7g450730 30.472 466 229 14 190 650 107 482 8.03e-50 181
MS.gene31898.t1 MTR_7g052480 32.372 312 197 8 350 651 227 534 5.27e-40 155
MS.gene31898.t1 MTR_6g044000 45.833 120 47 1 158 259 1 120 8.49e-29 113
MS.gene31898.t1 MTR_6g044000 77.358 53 12 0 592 644 117 169 1.33e-21 92.8
MS.gene31898.t1 MTR_7g445600 32.000 150 65 1 493 642 243 355 1.82e-21 97.1
MS.gene31898.t1 MTR_7g445600 36.508 126 69 3 190 315 106 220 5.41e-15 77.4
MS.gene31898.t1 MTR_1g080340 27.157 313 157 12 394 650 269 566 3.71e-19 92.0
MS.gene31898.t1 MTR_1g069570 25.161 310 162 10 394 648 430 724 3.97e-19 92.4
MS.gene31898.t1 MTR_5g098680 37.179 156 85 3 215 364 267 415 5.00e-19 92.0
MS.gene31898.t1 MTR_8g078490 29.891 184 115 3 461 642 1058 1229 2.18e-18 90.5
MS.gene31898.t1 MTR_4g132610 28.804 184 117 3 461 642 852 1023 6.59e-18 89.0
MS.gene31898.t1 MTR_6g027690 27.477 222 134 6 438 657 215 411 1.25e-17 86.3
MS.gene31898.t1 MTR_8g078505 29.508 183 115 4 461 642 346 515 1.36e-17 87.0
MS.gene31898.t1 MTR_5g018850 32.086 187 107 5 461 643 1312 1482 1.41e-17 87.8
MS.gene31898.t1 MTR_8g102580 34.615 156 89 3 215 364 261 409 2.14e-17 86.7
MS.gene31898.t1 MTR_7g098390 25.000 312 150 13 394 644 388 676 3.71e-16 82.8
MS.gene31898.t1 MTR_1g069570 25.573 262 126 9 394 601 430 676 8.86e-15 78.2
MS.gene31898.t1 MTR_7g445810 34.591 159 84 6 190 343 123 266 7.75e-14 72.8
MS.gene31898.t1 MTR_3g114910 32.000 150 91 3 215 364 187 325 1.17e-13 73.9
MS.gene31898.t1 MTR_1g064770 43.750 64 35 1 473 535 28 91 4.43e-12 62.8
MS.gene31898.t1 MTR_4g131630 53.846 52 21 1 589 640 1 49 6.83e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31898.t1 AT4G13460 55.152 660 269 10 10 657 6 650 0.0 711
MS.gene31898.t1 AT4G13460 55.152 660 269 10 10 657 6 650 0.0 711
MS.gene31898.t1 AT2G33290 52.688 651 266 11 21 657 29 651 0.0 674
MS.gene31898.t1 AT2G33290 52.688 651 266 11 21 657 29 651 0.0 674
MS.gene31898.t1 AT2G33290 52.688 651 266 11 21 657 29 651 0.0 674
MS.gene31898.t1 AT2G33290 52.688 651 266 11 21 657 29 651 0.0 674
MS.gene31898.t1 AT5G04940 38.889 504 277 12 156 645 155 641 1.19e-103 330
MS.gene31898.t1 AT5G04940 38.889 504 277 12 156 645 155 641 1.19e-103 330
MS.gene31898.t1 AT1G73100 40.430 465 254 12 191 645 189 640 1.42e-100 322
MS.gene31898.t1 AT2G22740 36.328 512 293 9 156 649 270 766 2.50e-96 314
MS.gene31898.t1 AT2G22740 36.328 512 293 9 156 649 270 766 2.50e-96 314
MS.gene31898.t1 AT2G35160 36.260 524 274 12 143 649 254 734 6.59e-96 312
MS.gene31898.t1 AT2G35160 36.260 524 274 12 143 649 290 770 1.21e-95 312
MS.gene31898.t1 AT2G35160 36.260 524 274 12 143 649 290 770 1.21e-95 312
MS.gene31898.t1 AT2G35160 36.260 524 274 12 143 649 290 770 1.21e-95 312
MS.gene31898.t1 AT2G35160 36.260 524 274 12 143 649 290 770 1.21e-95 312
MS.gene31898.t1 AT5G13960 36.456 491 272 16 187 651 126 602 1.46e-88 289
MS.gene31898.t1 AT5G13960 36.596 470 261 14 207 651 11 468 1.98e-87 282
MS.gene31898.t1 AT1G17770 37.124 466 269 12 192 645 209 662 4.03e-80 268
MS.gene31898.t1 AT2G24740 36.255 502 284 14 156 652 262 732 5.07e-76 258
MS.gene31898.t1 AT5G47150 36.364 275 162 6 92 364 61 324 3.89e-38 144
MS.gene31898.t1 AT5G47160 37.674 215 122 6 149 360 202 407 9.14e-29 119
MS.gene31898.t1 AT5G47160 37.674 215 122 6 149 360 202 407 9.14e-29 119
MS.gene31898.t1 AT5G47160 37.674 215 122 6 149 360 202 407 9.14e-29 119
MS.gene31898.t1 AT2G05900 36.257 171 104 3 252 422 26 191 2.49e-21 95.9
MS.gene31898.t1 AT2G23740 32.632 190 104 6 461 643 1184 1356 4.14e-21 99.4
MS.gene31898.t1 AT2G23740 32.632 190 104 6 461 643 1184 1356 4.14e-21 99.4
MS.gene31898.t1 AT2G23740 32.632 190 104 6 461 643 1184 1356 4.14e-21 99.4
MS.gene31898.t1 AT2G23740 32.632 190 104 6 461 643 1177 1349 4.28e-21 99.4
MS.gene31898.t1 AT3G03750 29.808 208 120 6 437 643 141 323 2.75e-18 87.4
MS.gene31898.t1 AT1G57820 35.669 157 87 4 215 364 277 426 7.18e-18 88.2
MS.gene31898.t1 AT1G57820 35.669 157 87 4 215 364 277 426 7.18e-18 88.2
MS.gene31898.t1 AT3G04380 24.183 306 162 11 394 644 146 436 1.42e-17 86.7
MS.gene31898.t1 AT3G04380 24.183 306 162 11 394 644 130 420 1.42e-17 86.7
MS.gene31898.t1 AT3G04380 24.183 306 162 11 394 644 119 409 1.59e-17 86.3
MS.gene31898.t1 AT3G04380 24.183 306 162 11 394 644 119 409 2.05e-17 85.9
MS.gene31898.t1 AT3G04380 24.183 306 162 11 394 644 146 436 2.07e-17 86.3
MS.gene31898.t1 AT3G04380 24.183 306 162 11 394 644 103 393 2.13e-17 85.9
MS.gene31898.t1 AT1G57820 35.065 154 89 4 215 364 277 423 8.64e-17 84.7
MS.gene31898.t1 AT5G39550 33.121 157 91 4 215 364 262 411 7.14e-15 78.6
MS.gene31898.t1 AT2G23740 33.108 148 75 6 461 601 1184 1314 1.42e-14 78.2
MS.gene31898.t1 AT2G23740 33.108 148 75 6 461 601 1184 1314 1.42e-14 78.2
MS.gene31898.t1 AT1G04050 25.076 331 160 11 382 644 387 697 1.46e-14 77.8
MS.gene31898.t1 AT1G04050 25.076 331 160 11 382 644 387 697 1.46e-14 77.8
MS.gene31898.t1 AT1G04050 25.076 331 160 11 382 644 283 593 2.01e-14 77.0
MS.gene31898.t1 AT1G66050 32.867 143 83 2 215 351 262 397 9.93e-14 75.1
MS.gene31898.t1 AT1G66040 33.566 143 82 3 215 351 262 397 1.01e-13 75.1
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 503 660 4.17e-13 73.2
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 503 660 4.17e-13 73.2
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 503 660 4.17e-13 73.2
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 503 660 4.17e-13 73.2
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 526 683 4.49e-13 73.2
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 526 683 4.49e-13 73.2
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 523 680 5.28e-13 72.8
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 523 680 5.28e-13 72.8
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 523 680 5.28e-13 72.8
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 523 680 5.28e-13 72.8
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 546 703 5.92e-13 72.8
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 546 703 5.92e-13 72.8
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 434 591 5.97e-13 72.4
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 454 611 7.42e-13 72.4
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 454 611 7.42e-13 72.4
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 454 611 7.42e-13 72.4
MS.gene31898.t1 AT5G43990 27.011 174 109 4 473 644 454 611 7.42e-13 72.4
MS.gene31898.t1 AT1G57800 31.646 158 93 5 215 364 289 439 3.46e-12 70.1
MS.gene31898.t1 AT1G57800 32.857 140 80 4 215 347 289 421 9.00e-12 68.9

Find 182 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTAGTGTGATTGTTTC+TGG 0.079078 1.1:+19703012 MS.gene31898:CDS
CTAGGTTCAGACTTAGATTT+AGG 0.191105 1.1:-19702396 None:intergenic
TTAGATTTAGGTTTAGATTT+TGG 0.203811 1.1:-19702384 None:intergenic
CGGAACCGTGTTACACAAAA+AGG 0.211826 1.1:+19703714 MS.gene31898:CDS
CATCAACAGCATCATTGTTT+TGG 0.236400 1.1:-19702534 None:intergenic
ACCGGATCAGCGTCAGTTTC+GGG 0.257025 1.1:+19702693 MS.gene31898:CDS
TTATGATTCGGTTCGTGTTT+TGG 0.278166 1.1:+19702741 MS.gene31898:CDS
AGGATTGTTGGCGCAATTCC+TGG 0.300223 1.1:+19702868 MS.gene31898:CDS
GGGAGACTGGTTGGGGAGTT+AGG 0.302694 1.1:+19703769 MS.gene31898:CDS
TACCGGATCAGCGTCAGTTT+CGG 0.304741 1.1:+19702692 MS.gene31898:CDS
GTATCCATCAATTCCTCCTT+TGG 0.310358 1.1:+19703974 MS.gene31898:CDS
AGAGAGTTCAGCCTTGATTA+TGG 0.322787 1.1:+19704152 MS.gene31898:CDS
GCAAGCCACATTCCTCATTC+TGG 0.324681 1.1:-19704015 None:intergenic
GGTTGGAAGTGTTTAGATCT+AGG 0.329004 1.1:+19703748 MS.gene31898:CDS
CACCAGCAGGAGGGGCATTA+TGG 0.334995 1.1:-19702615 None:intergenic
GATGTTGGTAAAAGTGGTTT+TGG 0.352738 1.1:+19703279 MS.gene31898:CDS
AGCTGGGATTGATTATTTGC+CGG 0.352953 1.1:+19702960 MS.gene31898:CDS
AGGATGGAGTTGTGTGTTGT+TGG 0.358052 1.1:+19702919 MS.gene31898:CDS
GTATGGAGCGTGTCGGTATA+AGG 0.360786 1.1:+19703439 MS.gene31898:CDS
GAAGGTACTTCTTCGACTTC+GGG 0.363101 1.1:+19703207 MS.gene31898:CDS
ATGGAGAGGAGTATGCATTA+TGG 0.365705 1.1:+19703150 MS.gene31898:CDS
GTCAGTTTCGGGACGTTGTT+AGG 0.371088 1.1:+19702704 MS.gene31898:CDS
ATAGCTCTTGCATTTGCATC+TGG 0.371282 1.1:-19702562 None:intergenic
TTTAAGTTATGGAGGATTGA+TGG 0.371705 1.1:+19703312 MS.gene31898:CDS
TTGTGTGTTGTTGGTTTACA+TGG 0.373186 1.1:+19702928 MS.gene31898:CDS
CACTTTGTGTTTCATGAAAG+TGG 0.374630 1.1:+19703531 MS.gene31898:CDS
GGCGGCGTCGACGCCGGCGC+CGG 0.374770 1.1:-19702458 None:intergenic
TAGATCTAGGGAGACTGGTT+GGG 0.375144 1.1:+19703761 MS.gene31898:CDS
GCTGATGGAAATGTTTGGTT+TGG 0.379538 1.1:-19702262 None:intergenic
GTTTGGATTATGAGGATTCA+TGG 0.380762 1.1:-19702245 None:intergenic
TCGGAAAATCTCCGCCATTC+TGG 0.390186 1.1:-19702479 None:intergenic
TTCAAACAGGTGGACGGAAT+GGG 0.394764 1.1:+19703911 MS.gene31898:CDS
TGAAGGTACTTCTTCGACTT+CGG 0.398545 1.1:+19703206 MS.gene31898:CDS
CATTCTGGCGGCGTCGACGC+CGG 0.406416 1.1:-19702464 None:intergenic
GACGAGGATGGTTTATGATT+CGG 0.406490 1.1:+19702729 MS.gene31898:CDS
AATGACGGATGTTGGGTTAC+CGG 0.408229 1.1:+19702675 MS.gene31898:CDS
CGGCGTCGACGCCGCCAGAA+TGG 0.408674 1.1:+19702465 MS.gene31898:CDS
GGTAAGGTTTATGTTTATGA+TGG 0.408695 1.1:+19703228 MS.gene31898:CDS
TCATCCCGAGGCTCTTGCTT+CGG 0.409571 1.1:-19702316 None:intergenic
TAAATGCACCAGCTTGAATA+AGG 0.411317 1.1:-19703800 None:intergenic
TGGAGAGGAGTATGCATTAT+GGG 0.415278 1.1:+19703151 MS.gene31898:CDS
GTCGACGCCGGCGCCGGTGG+TGG 0.415602 1.1:-19702452 None:intergenic
GTAGTTGTCCGCCTCATTGT+CGG 0.419366 1.1:+19703694 MS.gene31898:CDS
ACAAACTGAACCATCACATT+AGG 0.419575 1.1:-19704059 None:intergenic
ATGTTTATGATGGATTGTAT+AGG 0.423249 1.1:+19703238 MS.gene31898:CDS
CATTTATATGCGAGTACACT+GGG 0.423254 1.1:+19703817 MS.gene31898:CDS
TGTATAGGATTATTGAATGC+TGG 0.423863 1.1:+19703253 MS.gene31898:CDS
AAATCCAAAGGAGGAATTGA+TGG 0.424705 1.1:-19703978 None:intergenic
AGAAGCCCGCTTTGACTGTA+AGG 0.435492 1.1:-19703630 None:intergenic
GACGCCGGCGCCGGTGGTGG+TGG 0.437295 1.1:-19702449 None:intergenic
TGCATTATGGGATTGAGGTA+AGG 0.440994 1.1:+19703163 MS.gene31898:CDS
AATCGCGATAAGAGGATTGT+TGG 0.442442 1.1:+19702856 MS.gene31898:CDS
TCTTGATATTTCAAAGGGTA+TGG 0.448453 1.1:+19703422 MS.gene31898:CDS
GATTGATGGTCAAGCTAAGA+TGG 0.453129 1.1:+19703326 MS.gene31898:CDS
GGGGTGCTGATGGAAATGTT+TGG 0.454594 1.1:-19702267 None:intergenic
GTTGGAAGTGTTTAGATCTA+GGG 0.456470 1.1:+19703749 MS.gene31898:CDS
GTGTTTAGATCTAGGGAGAC+TGG 0.456502 1.1:+19703756 MS.gene31898:CDS
CTTGTTCGAATGACGGATGT+TGG 0.459771 1.1:+19702667 MS.gene31898:CDS
CTCTTGATGTATCCAGAATG+AGG 0.465074 1.1:+19704003 MS.gene31898:CDS
GATTGTTTCTGGTGGGTATG+AGG 0.465601 1.1:+19703023 MS.gene31898:CDS
GCAATTCCTGGGATTTGTAT+TGG 0.469249 1.1:+19702880 MS.gene31898:CDS
TTGTTCGAATGACGGATGTT+GGG 0.470012 1.1:+19702668 MS.gene31898:CDS
AATGTTTGGTTTGGATTATG+AGG 0.470379 1.1:-19702253 None:intergenic
GGCGTCGACGCCGGCGCCGG+TGG 0.471937 1.1:-19702455 None:intergenic
AGATCTAGGGAGACTGGTTG+GGG 0.471997 1.1:+19703762 MS.gene31898:CDS
GTTATTATTTACTCGGGTCA+TGG 0.472036 1.1:+19703066 MS.gene31898:CDS
ATATCTCTTGATATTTCAAA+GGG 0.472635 1.1:+19703417 MS.gene31898:CDS
AGGTGATGTTATTATTTACT+CGG 0.473486 1.1:+19703059 MS.gene31898:CDS
TACTTCTTCGACTTCGGGTA+AGG 0.474074 1.1:+19703212 MS.gene31898:CDS
TGGTTTGATGTTGGTAAAAG+TGG 0.475144 1.1:+19703273 MS.gene31898:CDS
GCCCTTGAGAAACAAAATCT+AGG 0.476619 1.1:-19702414 None:intergenic
GAACAACCAACCACCACCAC+CGG 0.476859 1.1:+19702439 MS.gene31898:CDS
TCCCGAAACTGACGCTGATC+CGG 0.482112 1.1:-19702694 None:intergenic
TTGGCTATGGCTGAAGAAGA+AGG 0.484128 1.1:+19702760 MS.gene31898:CDS
TACCATAATGCCCCTCCTGC+TGG 0.488379 1.1:+19702613 MS.gene31898:CDS
CCGGCGCCGGTGGTGGTGGT+TGG 0.488719 1.1:-19702445 None:intergenic
TATATCTCTTGATATTTCAA+AGG 0.488782 1.1:+19703416 MS.gene31898:CDS
CATGAAAGTGGGAATGCGAC+AGG 0.494424 1.1:+19703543 MS.gene31898:CDS
GCTGGGATTGATTATTTGCC+GGG 0.495001 1.1:+19702961 MS.gene31898:CDS
GCTATTGTTCCGGTTCCTGC+TGG 0.497566 1.1:+19702580 MS.gene31898:CDS
GCATTTATATGCGAGTACAC+TGG 0.498857 1.1:+19703816 MS.gene31898:CDS
TTTCAAACAGGTGGACGGAA+TGG 0.498875 1.1:+19703910 MS.gene31898:CDS
TACACCGAAGCAAGAGCCTC+GGG 0.501130 1.1:+19702312 MS.gene31898:CDS
AAAAGGGCTTAAACATAGGT+TGG 0.501382 1.1:+19703731 MS.gene31898:CDS
TGTGGCTGAATCGCGATAAG+AGG 0.502293 1.1:+19702848 MS.gene31898:CDS
TTATTCTCACCAGCAGGAAC+CGG 0.503916 1.1:-19702589 None:intergenic
AATTTATCTCTGATTCAAGA+TGG 0.504650 1.1:+19703936 MS.gene31898:CDS
CGCAACCTCACCAGCAGGAG+GGG 0.513548 1.1:-19702623 None:intergenic
GCATTATGGGATTGAGGTAA+GGG 0.515857 1.1:+19703164 MS.gene31898:CDS
TCACATTATGCTGTTTGCGA+TGG 0.516973 1.1:+19704112 MS.gene31898:CDS
GGATATTGAAATTCTTGCGT+TGG 0.517003 1.1:-19702340 None:intergenic
GGTGATGTTATTATTTACTC+GGG 0.517521 1.1:+19703060 MS.gene31898:CDS
TTACTCGGGTCATGGTGGAC+AGG 0.519127 1.1:+19703074 MS.gene31898:CDS
GGATTGTTGGCGCAATTCCT+GGG 0.519426 1.1:+19702869 MS.gene31898:CDS
TACATGGTCAACCTCAAGCT+GGG 0.522010 1.1:+19702944 MS.gene31898:CDS
ATTCGCGGTGTGAGGTATGA+AGG 0.522477 1.1:+19703189 MS.gene31898:CDS
CTAGTGTGATTGTTTCTGGT+GGG 0.526236 1.1:+19703016 MS.gene31898:CDS
AGCATAGGAAAAGGAATACC+AGG 0.526910 1.1:-19702289 None:intergenic
ACTAGTGTGATTGTTTCTGG+TGG 0.533046 1.1:+19703015 MS.gene31898:CDS
GAGTATGCATTATGGGATTG+AGG 0.534486 1.1:+19703158 MS.gene31898:CDS
ACTTTGTGTTTCATGAAAGT+GGG 0.535570 1.1:+19703532 MS.gene31898:CDS
TGGTAATTATTCTCACCAGC+AGG 0.536793 1.1:-19702595 None:intergenic
CAAAGCGGGCTTCTCTTGAA+AGG 0.538573 1.1:+19703639 MS.gene31898:CDS
ATTGAATGCTGGTTTGATGT+TGG 0.540002 1.1:+19703264 MS.gene31898:CDS
TCAAGGCTGAACTCTCTCAA+TGG 0.540411 1.1:-19704146 None:intergenic
ACAATCACACTAGTAGCAAT+CGG 0.540891 1.1:-19703006 None:intergenic
TTAGATCTAGGGAGACTGGT+TGG 0.541898 1.1:+19703760 MS.gene31898:CDS
CCAACCACCACCACCGGCGC+CGG 0.541973 1.1:+19702445 MS.gene31898:CDS
TCATTGGACCTTATTCAAGC+TGG 0.545200 1.1:+19703792 MS.gene31898:CDS
ACTTTCCTTACAGTCAAAGC+GGG 0.545405 1.1:+19703625 MS.gene31898:CDS
TTCATCAGAAGCTGGAAGGT+GGG 0.546457 1.1:+19703118 MS.gene31898:CDS
TTCGGTGTAAGCATAGGAAA+AGG 0.548026 1.1:-19702298 None:intergenic
TTCCGACGCTCATTCACTGA+AGG 0.548549 1.1:+19702496 MS.gene31898:CDS
TAATGCCCCTCCTGCTGGTG+AGG 0.550096 1.1:+19702618 MS.gene31898:CDS
TTACATGGTCAACCTCAAGC+TGG 0.553493 1.1:+19702943 MS.gene31898:CDS
TGGTTGGGGAGTTAGGTCAT+TGG 0.553990 1.1:+19703776 MS.gene31898:CDS
TATTAATGAATCACCACTCA+TGG 0.554494 1.1:-19703874 None:intergenic
GCTTCTCTTGAAAGGAAAGC+CGG 0.556611 1.1:+19703647 MS.gene31898:CDS
ATTGATGGTCAAGCTAAGAT+GGG 0.559091 1.1:+19703327 MS.gene31898:CDS
TTTCATCAGAAGCTGGAAGG+TGG 0.563122 1.1:+19703117 MS.gene31898:CDS
CGTTGTTAGGAGGACGAGGA+TGG 0.564376 1.1:+19702717 MS.gene31898:CDS
CGATGAGGAGTCGAGGATTG+TGG 0.566797 1.1:+19702830 MS.gene31898:CDS
ACATTCGCAACCTCACCAGC+AGG 0.568299 1.1:-19702628 None:intergenic
TCAAACAGGTGGACGGAATG+GGG 0.569248 1.1:+19703912 MS.gene31898:CDS
GTGGACAGGATAAGAATTCG+AGG 0.571781 1.1:+19703088 MS.gene31898:CDS
CCGGGGAGTATGAGTTCGAA+TGG 0.571907 1.1:+19702979 MS.gene31898:CDS
ACAGGATAAGAATTCGAGGC+AGG 0.572812 1.1:+19703092 MS.gene31898:CDS
CATCAGCTACACCATAATCA+AGG 0.573838 1.1:-19704163 None:intergenic
TGGCTATGGCTGAAGAAGAA+GGG 0.574030 1.1:+19702761 MS.gene31898:CDS
GGCTGAACTCTCTCAATGGA+GGG 0.575518 1.1:-19704142 None:intergenic
GGAAGGTGGGAATCTTGCTA+TGG 0.576684 1.1:+19703131 MS.gene31898:CDS
TAAAGAGCTTGTTCGAATGA+CGG 0.576987 1.1:+19702660 MS.gene31898:CDS
TCTTGCTTCGGTGTAAGCAT+AGG 0.581620 1.1:-19702304 None:intergenic
TGCGACAGGTTGTCAATGTG+AGG 0.581743 1.1:+19703557 MS.gene31898:CDS
AAATGCAAGAGCTATTGTTC+CGG 0.584406 1.1:+19702570 MS.gene31898:CDS
TAGCTCAACTCCTAATGTGA+TGG 0.586959 1.1:+19704049 MS.gene31898:CDS
GAAAATCTCCGCCATTCTGG+CGG 0.591102 1.1:-19702476 None:intergenic
CTGGTGAGGTTGCGAATGTA+CGG 0.592271 1.1:+19702632 MS.gene31898:CDS
TTACACCGAAGCAAGAGCCT+CGG 0.592731 1.1:+19702311 MS.gene31898:CDS
CTTTCATGAAACACAAAGTG+TGG 0.594064 1.1:-19703528 None:intergenic
CGTCGACGCCGCCAGAATGG+CGG 0.594115 1.1:+19702468 MS.gene31898:CDS
GGGACGTTGTTAGGAGGACG+AGG 0.594825 1.1:+19702713 MS.gene31898:CDS
AGGCTGAACTCTCTCAATGG+AGG 0.596120 1.1:-19704143 None:intergenic
AAGTGTGGAAAAGTAGCCCT+AGG 0.596819 1.1:-19703513 None:intergenic
AGTTTCGGGACGTTGTTAGG+AGG 0.598043 1.1:+19702707 MS.gene31898:CDS
TCGCAACCTCACCAGCAGGA+GGG 0.598600 1.1:-19702624 None:intergenic
ATTGAGGTAAGGGTTATTCG+CGG 0.599919 1.1:+19703174 MS.gene31898:CDS
TCAAGAGATATAACACACAT+AGG 0.602330 1.1:-19703405 None:intergenic
TCTTGCGTTGGTTCATCCCG+AGG 0.604080 1.1:-19702328 None:intergenic
GGAGGAATTGATGGATACGA+AGG 0.604652 1.1:-19703969 None:intergenic
ATCCTTCAGTGAATGAGCGT+CGG 0.615611 1.1:-19702498 None:intergenic
ACATCACCAATACAAATCCC+AGG 0.617403 1.1:-19702886 None:intergenic
TCAGAAATTATGACCATGAG+TGG 0.618462 1.1:+19703861 MS.gene31898:CDS
TAAGGGTTATTCGCGGTGTG+AGG 0.624788 1.1:+19703181 MS.gene31898:CDS
ACACTGGGGTTGTTCTGACA+AGG 0.627478 1.1:+19703832 MS.gene31898:CDS
TTCGCAACCTCACCAGCAGG+AGG 0.628056 1.1:-19702625 None:intergenic
CCATTCGAACTCATACTCCC+CGG 0.628119 1.1:-19702979 None:intergenic
GTGGGAATCTTGCTATGGAG+AGG 0.630151 1.1:+19703136 MS.gene31898:CDS
TATGAGGATGATGTTGATGA+AGG 0.637266 1.1:+19703039 MS.gene31898:CDS
GGAATTGATGGATACGAAGG+AGG 0.638458 1.1:-19703966 None:intergenic
GCGACAGGTTGTCAATGTGA+GGG 0.638640 1.1:+19703558 MS.gene31898:CDS
GACTTTCCTTACAGTCAAAG+CGG 0.639876 1.1:+19703624 MS.gene31898:CDS
ATCGCAAACAGCATAATGTG+AGG 0.644756 1.1:-19704110 None:intergenic
AAATAATCAATCCCAGCTTG+AGG 0.645920 1.1:-19702955 None:intergenic
GTAGCTGATGATGAGTTGAC+TGG 0.647668 1.1:+19704176 MS.gene31898:CDS
CACATAGGTTTATAACACAA+AGG 0.649300 1.1:-19703390 None:intergenic
CTGGGATTGATTATTTGCCG+GGG 0.652302 1.1:+19702962 MS.gene31898:CDS
TCGCAAACAGCATAATGTGA+GGG 0.654166 1.1:-19704109 None:intergenic
TGAAAGCTTCTACTACGATG+AGG 0.657632 1.1:+19702815 MS.gene31898:CDS
TGAGGCGGACAACTACAAGA+AGG 0.667023 1.1:-19703687 None:intergenic
CACTGGGGTTGTTCTGACAA+GGG 0.671410 1.1:+19703833 MS.gene31898:CDS
ATTATTTACTCGGGTCATGG+TGG 0.676989 1.1:+19703069 MS.gene31898:CDS
TCTACTACGATGAGGAGTCG+AGG 0.680653 1.1:+19702823 MS.gene31898:CDS
ACACGGTTCCGACAATGAGG+CGG 0.681770 1.1:-19703702 None:intergenic
TCAAAGGGTATGGAGCGTGT+CGG 0.683293 1.1:+19703432 MS.gene31898:CDS
GGAAGATACTCAAAACACAT+CGG 0.687151 1.1:-19703492 None:intergenic
GCATAGGAAAAGGAATACCA+GGG 0.688262 1.1:-19702288 None:intergenic
GTAACACGGTTCCGACAATG+AGG 0.703986 1.1:-19703705 None:intergenic
CATAGGAAAAGGAATACCAG+GGG 0.729249 1.1:-19702287 None:intergenic
TGTATCCAGAATGAGGAATG+TGG 0.734351 1.1:+19704010 MS.gene31898:CDS
ATTTATATGCGAGTACACTG+GGG 0.744900 1.1:+19703818 MS.gene31898:CDS
ATAGGAAAAGGAATACCAGG+GGG 0.791262 1.1:-19702286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTCTTGATATTTCAAA+GGG + chr1.1:19703417-19703436 MS.gene31898:CDS 20.0%
!! TATATCTCTTGATATTTCAA+AGG + chr1.1:19703416-19703435 MS.gene31898:CDS 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG + chr1.1:19703301-19703320 MS.gene31898:CDS 20.0%
!!! TGTTTTTGTTTCATAAAGAA+TGG + chr1.1:19703597-19703616 MS.gene31898:CDS 20.0%
!!! TTAGATTTAGGTTTAGATTT+TGG - chr1.1:19702387-19702406 None:intergenic 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG + chr1.1:19703304-19703323 MS.gene31898:CDS 20.0%
! AATTTATCTCTGATTCAAGA+TGG + chr1.1:19703936-19703955 MS.gene31898:CDS 25.0%
! AGGTGATGTTATTATTTACT+CGG + chr1.1:19703059-19703078 MS.gene31898:CDS 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG + chr1.1:19702776-19702795 MS.gene31898:CDS 25.0%
!!! ATGTTTATGATGGATTGTAT+AGG + chr1.1:19703238-19703257 MS.gene31898:CDS 25.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG - chr1.1:19702382-19702401 None:intergenic 25.0%
ACATCAAGAGAAAAATCCAA+AGG - chr1.1:19703993-19704012 None:intergenic 30.0%
ACTTTGTGTTTCATGAAAGT+GGG + chr1.1:19703532-19703551 MS.gene31898:CDS 30.0%
CACATAGGTTTATAACACAA+AGG - chr1.1:19703393-19703412 None:intergenic 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1.1:19703228-19703247 MS.gene31898:CDS 30.0%
GGTGATGTTATTATTTACTC+GGG + chr1.1:19703060-19703079 MS.gene31898:CDS 30.0%
TATTAATGAATCACCACTCA+TGG - chr1.1:19703877-19703896 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG - chr1.1:19703408-19703427 None:intergenic 30.0%
TCTTGATATTTCAAAGGGTA+TGG + chr1.1:19703422-19703441 MS.gene31898:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG + chr1.1:19703253-19703272 MS.gene31898:CDS 30.0%
! TTCGGTAAATTTTCTAGGTT+TGG - chr1.1:19702364-19702383 None:intergenic 30.0%
! TTTAAGTTATGGAGGATTGA+TGG + chr1.1:19703312-19703331 MS.gene31898:CDS 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG + chr1.1:19702412-19702431 MS.gene31898:CDS 30.0%
!! AATGTTTGGTTTGGATTATG+AGG - chr1.1:19702256-19702275 None:intergenic 30.0%
!! ACCTAGATTTTGTTTCTCAA+GGG + chr1.1:19702413-19702432 MS.gene31898:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG + chr1.1:19703344-19703363 MS.gene31898:CDS 30.0%
!! TGATGTGTTTTTGTATAGGA+TGG + chr1.1:19702903-19702922 MS.gene31898:CDS 30.0%
!!! TAAAGGAGGCTTTTTTACTT+AGG + chr1.1:19703361-19703380 MS.gene31898:CDS 30.0%
!!! TTGGTGATGTGTTTTTGTAT+AGG + chr1.1:19702899-19702918 MS.gene31898:CDS 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG - chr1.1:19702369-19702388 None:intergenic 30.0%
AAAAGGGCTTAAACATAGGT+TGG + chr1.1:19703731-19703750 MS.gene31898:CDS 35.0%
AAATAATCAATCCCAGCTTG+AGG - chr1.1:19702958-19702977 None:intergenic 35.0%
AAATCCAAAGGAGGAATTGA+TGG - chr1.1:19703981-19704000 None:intergenic 35.0%
AAATGCAAGAGCTATTGTTC+CGG + chr1.1:19702570-19702589 MS.gene31898:CDS 35.0%
ACAAACTGAACCATCACATT+AGG - chr1.1:19704062-19704081 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+CGG - chr1.1:19703009-19703028 None:intergenic 35.0%
ATTTATATGCGAGTACACTG+GGG + chr1.1:19703818-19703837 MS.gene31898:CDS 35.0%
CACAAAAAGGGCTTAAACAT+AGG + chr1.1:19703727-19703746 MS.gene31898:CDS 35.0%
CACCTGTTTGAAAAACGATT+CGG - chr1.1:19703903-19703922 None:intergenic 35.0%
CACTTTGTGTTTCATGAAAG+TGG + chr1.1:19703531-19703550 MS.gene31898:CDS 35.0%
CATTTATATGCGAGTACACT+GGG + chr1.1:19703817-19703836 MS.gene31898:CDS 35.0%
CTAGGTTCAGACTTAGATTT+AGG - chr1.1:19702399-19702418 None:intergenic 35.0%
CTTTCATGAAACACAAAGTG+TGG - chr1.1:19703531-19703550 None:intergenic 35.0%
GGAAGATACTCAAAACACAT+CGG - chr1.1:19703495-19703514 None:intergenic 35.0%
GGATATTGAAATTCTTGCGT+TGG - chr1.1:19702343-19702362 None:intergenic 35.0%
GTTATTATTTACTCGGGTCA+TGG + chr1.1:19703066-19703085 MS.gene31898:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG - chr1.1:19703803-19703822 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG - chr1.1:19703990-19704009 None:intergenic 35.0%
TCAGAAATTATGACCATGAG+TGG + chr1.1:19703861-19703880 MS.gene31898:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG + chr1.1:19703327-19703346 MS.gene31898:CDS 35.0%
! CATCAACAGCATCATTGTTT+TGG - chr1.1:19702537-19702556 None:intergenic 35.0%
! TAAAGAGCTTGTTCGAATGA+CGG + chr1.1:19702660-19702679 MS.gene31898:CDS 35.0%
! TAAGCCCTTTTTGTGTAACA+CGG - chr1.1:19703722-19703741 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG + chr1.1:19703039-19703058 MS.gene31898:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG + chr1.1:19703273-19703292 MS.gene31898:CDS 35.0%
!! ATCCGAATCGTTTTTCAAAC+AGG + chr1.1:19703898-19703917 MS.gene31898:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG + chr1.1:19703264-19703283 MS.gene31898:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG + chr1.1:19703279-19703298 MS.gene31898:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG + chr1.1:19703347-19703366 MS.gene31898:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG + chr1.1:19703497-19703516 MS.gene31898:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG + chr1.1:19703749-19703768 MS.gene31898:CDS 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG + chr1.1:19703496-19703515 MS.gene31898:CDS 35.0%
!! TTGTGTGTTGTTGGTTTACA+TGG + chr1.1:19702928-19702947 MS.gene31898:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG + chr1.1:19702741-19702760 MS.gene31898:CDS 35.0%
AATCGCGATAAGAGGATTGT+TGG + chr1.1:19702856-19702875 MS.gene31898:CDS 40.0%
ACATCACCAATACAAATCCC+AGG - chr1.1:19702889-19702908 None:intergenic 40.0%
ACTTTCCTTACAGTCAAAGC+GGG + chr1.1:19703625-19703644 MS.gene31898:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG + chr1.1:19704152-19704171 MS.gene31898:CDS 40.0%
AGCATAGGAAAAGGAATACC+AGG - chr1.1:19702292-19702311 None:intergenic 40.0%
AGCTGGGATTGATTATTTGC+CGG + chr1.1:19702960-19702979 MS.gene31898:CDS 40.0%
ATAGCTCTTGCATTTGCATC+TGG - chr1.1:19702565-19702584 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG - chr1.1:19702289-19702308 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG - chr1.1:19704113-19704132 None:intergenic 40.0%
ATTATTTACTCGGGTCATGG+TGG + chr1.1:19703069-19703088 MS.gene31898:CDS 40.0%
ATTGAGGTAAGGGTTATTCG+CGG + chr1.1:19703174-19703193 MS.gene31898:CDS 40.0%
CATAGGAAAAGGAATACCAG+GGG - chr1.1:19702290-19702309 None:intergenic 40.0%
CATCAGCTACACCATAATCA+AGG - chr1.1:19704166-19704185 None:intergenic 40.0%
CTCTTGATGTATCCAGAATG+AGG + chr1.1:19704003-19704022 MS.gene31898:CDS 40.0%
GACGAGGATGGTTTATGATT+CGG + chr1.1:19702729-19702748 MS.gene31898:CDS 40.0%
GACTTTCCTTACAGTCAAAG+CGG + chr1.1:19703624-19703643 MS.gene31898:CDS 40.0%
GAGTATGCATTATGGGATTG+AGG + chr1.1:19703158-19703177 MS.gene31898:CDS 40.0%
GCAATTCCTGGGATTTGTAT+TGG + chr1.1:19702880-19702899 MS.gene31898:CDS 40.0%
GCATAGGAAAAGGAATACCA+GGG - chr1.1:19702291-19702310 None:intergenic 40.0%
GCATTATGGGATTGAGGTAA+GGG + chr1.1:19703164-19703183 MS.gene31898:CDS 40.0%
GCATTTATATGCGAGTACAC+TGG + chr1.1:19703816-19703835 MS.gene31898:CDS 40.0%
GCCCTTGAGAAACAAAATCT+AGG - chr1.1:19702417-19702436 None:intergenic 40.0%
GCTACTAGTGTGATTGTTTC+TGG + chr1.1:19703012-19703031 MS.gene31898:CDS 40.0%
GCTGATGGAAATGTTTGGTT+TGG - chr1.1:19702265-19702284 None:intergenic 40.0%
GGAACCGTGTTACACAAAAA+GGG + chr1.1:19703715-19703734 MS.gene31898:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG - chr1.1:19703669-19703688 None:intergenic 40.0%
GTATCCATCAATTCCTCCTT+TGG + chr1.1:19703974-19703993 MS.gene31898:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG + chr1.1:19704049-19704068 MS.gene31898:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG + chr1.1:19703792-19703811 MS.gene31898:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG - chr1.1:19704112-19704131 None:intergenic 40.0%
TGAAAGCTTCTACTACGATG+AGG + chr1.1:19702815-19702834 MS.gene31898:CDS 40.0%
TGCATTATGGGATTGAGGTA+AGG + chr1.1:19703163-19703182 MS.gene31898:CDS 40.0%
TGGTAATTATTCTCACCAGC+AGG - chr1.1:19702598-19702617 None:intergenic 40.0%
TGTATCCAGAATGAGGAATG+TGG + chr1.1:19704010-19704029 MS.gene31898:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG + chr1.1:19703150-19703169 MS.gene31898:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG + chr1.1:19703326-19703345 MS.gene31898:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG + chr1.1:19703114-19703133 MS.gene31898:CDS 40.0%
! TCACATTATGCTGTTTGCGA+TGG + chr1.1:19704112-19704131 MS.gene31898:CDS 40.0%
! TGGAGAGGAGTATGCATTAT+GGG + chr1.1:19703151-19703170 MS.gene31898:CDS 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG - chr1.1:19702301-19702320 None:intergenic 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG + chr1.1:19703015-19703034 MS.gene31898:CDS 40.0%
!! CGAATCGTTTTTCAAACAGG+TGG + chr1.1:19703901-19703920 MS.gene31898:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG + chr1.1:19703016-19703035 MS.gene31898:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG + chr1.1:19703748-19703767 MS.gene31898:CDS 40.0%
!! TCGTTTTTCAAACAGGTGGA+CGG + chr1.1:19703905-19703924 MS.gene31898:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG + chr1.1:19703206-19703225 MS.gene31898:CDS 40.0%
!! TTGTTCGAATGACGGATGTT+GGG + chr1.1:19702668-19702687 MS.gene31898:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG + chr1.1:19703663-19703682 MS.gene31898:CDS 40.0%
AAGTGTGGAAAAGTAGCCCT+AGG - chr1.1:19703516-19703535 None:intergenic 45.0%
ACAGGATAAGAATTCGAGGC+AGG + chr1.1:19703092-19703111 MS.gene31898:CDS 45.0%
AGGATGGAGTTGTGTGTTGT+TGG + chr1.1:19702919-19702938 MS.gene31898:CDS 45.0%
ATCCTTCAGTGAATGAGCGT+CGG - chr1.1:19702501-19702520 None:intergenic 45.0%
CGGAACCGTGTTACACAAAA+AGG + chr1.1:19703714-19703733 MS.gene31898:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG + chr1.1:19702962-19702981 MS.gene31898:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG + chr1.1:19702961-19702980 MS.gene31898:CDS 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG + chr1.1:19703647-19703666 MS.gene31898:CDS 45.0%
GTGGACAGGATAAGAATTCG+AGG + chr1.1:19703088-19703107 MS.gene31898:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG + chr1.1:19703756-19703775 MS.gene31898:CDS 45.0%
TACATGGTCAACCTCAAGCT+GGG + chr1.1:19702944-19702963 MS.gene31898:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG + chr1.1:19703212-19703231 MS.gene31898:CDS 45.0%
TCAAGGCTGAACTCTCTCAA+TGG - chr1.1:19704149-19704168 None:intergenic 45.0%
TGGCTATGGCTGAAGAAGAA+GGG + chr1.1:19702761-19702780 MS.gene31898:CDS 45.0%
TTACATGGTCAACCTCAAGC+TGG + chr1.1:19702943-19702962 MS.gene31898:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG + chr1.1:19703760-19703779 MS.gene31898:CDS 45.0%
TTATTCTCACCAGCAGGAAC+CGG - chr1.1:19702592-19702611 None:intergenic 45.0%
TTCAAACAGGTGGACGGAAT+GGG + chr1.1:19703911-19703930 MS.gene31898:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG + chr1.1:19703118-19703137 MS.gene31898:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG + chr1.1:19702760-19702779 MS.gene31898:CDS 45.0%
TTTCAAACAGGTGGACGGAA+TGG + chr1.1:19703910-19703929 MS.gene31898:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG + chr1.1:19703117-19703136 MS.gene31898:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG + chr1.1:19703110-19703129 MS.gene31898:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG - chr1.1:19703969-19703988 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG - chr1.1:19703972-19703991 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG + chr1.1:19704176-19704195 MS.gene31898:CDS 45.0%
! GTCAATGTGAGGGCTTTTGT+GGG + chr1.1:19703568-19703587 MS.gene31898:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG + chr1.1:19703761-19703780 MS.gene31898:CDS 45.0%
! TCAATGTGAGGGCTTTTGTG+GGG + chr1.1:19703569-19703588 MS.gene31898:CDS 45.0%
! TCTTGCTTCGGTGTAAGCAT+AGG - chr1.1:19702307-19702326 None:intergenic 45.0%
! TGTCAATGTGAGGGCTTTTG+TGG + chr1.1:19703567-19703586 MS.gene31898:CDS 45.0%
!! AATGACGGATGTTGGGTTAC+CGG + chr1.1:19702675-19702694 MS.gene31898:CDS 45.0%
!! CTTGTTCGAATGACGGATGT+TGG + chr1.1:19702667-19702686 MS.gene31898:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG + chr1.1:19703207-19703226 MS.gene31898:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG + chr1.1:19703023-19703042 MS.gene31898:CDS 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG + chr1.1:19702747-19702766 MS.gene31898:CDS 45.0%
ACACTGGGGTTGTTCTGACA+AGG + chr1.1:19703832-19703851 MS.gene31898:CDS 50.0%
AGAAGCCCGCTTTGACTGTA+AGG - chr1.1:19703633-19703652 None:intergenic 50.0%
AGGATTGTTGGCGCAATTCC+TGG + chr1.1:19702868-19702887 MS.gene31898:CDS 50.0%
AGGCTGAACTCTCTCAATGG+AGG - chr1.1:19704146-19704165 None:intergenic 50.0%
AGTTTCGGGACGTTGTTAGG+AGG + chr1.1:19702707-19702726 MS.gene31898:CDS 50.0%
ATTCGCGGTGTGAGGTATGA+AGG + chr1.1:19703189-19703208 MS.gene31898:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG + chr1.1:19703833-19703852 MS.gene31898:CDS 50.0%
CATGAAAGTGGGAATGCGAC+AGG + chr1.1:19703543-19703562 MS.gene31898:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG - chr1.1:19702982-19703001 None:intergenic 50.0%
CTGGTGAGGTTGCGAATGTA+CGG + chr1.1:19702632-19702651 MS.gene31898:CDS 50.0%
GAAAATCTCCGCCATTCTGG+CGG - chr1.1:19702479-19702498 None:intergenic 50.0%
GCAAGCCACATTCCTCATTC+TGG - chr1.1:19704018-19704037 None:intergenic 50.0%
GCGACAGGTTGTCAATGTGA+GGG + chr1.1:19703558-19703577 MS.gene31898:CDS 50.0%
GGAAGGTGGGAATCTTGCTA+TGG + chr1.1:19703131-19703150 MS.gene31898:CDS 50.0%
GGATTGTTGGCGCAATTCCT+GGG + chr1.1:19702869-19702888 MS.gene31898:CDS 50.0%
GGCTGAACTCTCTCAATGGA+GGG - chr1.1:19704145-19704164 None:intergenic 50.0%
GTAACACGGTTCCGACAATG+AGG - chr1.1:19703708-19703727 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG + chr1.1:19703694-19703713 MS.gene31898:CDS 50.0%
GTCAGTTTCGGGACGTTGTT+AGG + chr1.1:19702704-19702723 MS.gene31898:CDS 50.0%
TAAGGGTTATTCGCGGTGTG+AGG + chr1.1:19703181-19703200 MS.gene31898:CDS 50.0%
TACCGGATCAGCGTCAGTTT+CGG + chr1.1:19702692-19702711 MS.gene31898:CDS 50.0%
TCAAACAGGTGGACGGAATG+GGG + chr1.1:19703912-19703931 MS.gene31898:CDS 50.0%
TCGGAAAATCTCCGCCATTC+TGG - chr1.1:19702482-19702501 None:intergenic 50.0%
TCTACTACGATGAGGAGTCG+AGG + chr1.1:19702823-19702842 MS.gene31898:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG - chr1.1:19703690-19703709 None:intergenic 50.0%
TGCGACAGGTTGTCAATGTG+AGG + chr1.1:19703557-19703576 MS.gene31898:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG + chr1.1:19703776-19703795 MS.gene31898:CDS 50.0%
TGTGGCTGAATCGCGATAAG+AGG + chr1.1:19702848-19702867 MS.gene31898:CDS 50.0%
TTACACCGAAGCAAGAGCCT+CGG + chr1.1:19702311-19702330 MS.gene31898:CDS 50.0%
TTCCGACGCTCATTCACTGA+AGG + chr1.1:19702496-19702515 MS.gene31898:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG + chr1.1:19703762-19703781 MS.gene31898:CDS 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG + chr1.1:19703639-19703658 MS.gene31898:CDS 50.0%
! GTATGGAGCGTGTCGGTATA+AGG + chr1.1:19703439-19703458 MS.gene31898:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG + chr1.1:19703136-19703155 MS.gene31898:CDS 50.0%
! TCAAAGGGTATGGAGCGTGT+CGG + chr1.1:19703432-19703451 MS.gene31898:CDS 50.0%
!! GGGGTGCTGATGGAAATGTT+TGG - chr1.1:19702270-19702289 None:intergenic 50.0%
ACACGGTTCCGACAATGAGG+CGG - chr1.1:19703705-19703724 None:intergenic 55.0%
ACATTCGCAACCTCACCAGC+AGG - chr1.1:19702631-19702650 None:intergenic 55.0%
ACATTTCCATCAGCACCCCC+TGG + chr1.1:19702271-19702290 MS.gene31898:CDS 55.0%
ACCGGATCAGCGTCAGTTTC+GGG + chr1.1:19702693-19702712 MS.gene31898:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG + chr1.1:19702830-19702849 MS.gene31898:CDS 55.0%
CGTTGTTAGGAGGACGAGGA+TGG + chr1.1:19702717-19702736 MS.gene31898:CDS 55.0%
GAACAACCAACCACCACCAC+CGG + chr1.1:19702439-19702458 MS.gene31898:CDS 55.0%
GCTATTGTTCCGGTTCCTGC+TGG + chr1.1:19702580-19702599 MS.gene31898:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG + chr1.1:19702312-19702331 MS.gene31898:CDS 55.0%
TACCATAATGCCCCTCCTGC+TGG + chr1.1:19702613-19702632 MS.gene31898:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG - chr1.1:19702319-19702338 None:intergenic 55.0%
TCCCGAAACTGACGCTGATC+CGG - chr1.1:19702697-19702716 None:intergenic 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG + chr1.1:19702979-19702998 MS.gene31898:CDS 55.0%
! TGTGAGGGCTTTTGTGGGGA+AGG + chr1.1:19703573-19703592 MS.gene31898:CDS 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG - chr1.1:19702331-19702350 None:intergenic 55.0%
!! TTACTCGGGTCATGGTGGAC+AGG + chr1.1:19703074-19703093 MS.gene31898:CDS 55.0%
GGGACGTTGTTAGGAGGACG+AGG + chr1.1:19702713-19702732 MS.gene31898:CDS 60.0%
TAATGCCCCTCCTGCTGGTG+AGG + chr1.1:19702618-19702637 MS.gene31898:CDS 60.0%
TCGCAACCTCACCAGCAGGA+GGG - chr1.1:19702627-19702646 None:intergenic 60.0%
TTCGCAACCTCACCAGCAGG+AGG - chr1.1:19702628-19702647 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG + chr1.1:19703769-19703788 MS.gene31898:CDS 60.0%
!! CACCAGCAGGAGGGGCATTA+TGG - chr1.1:19702618-19702637 None:intergenic 60.0%
!! GGAATACCAGGGGGTGCTGA+TGG - chr1.1:19702280-19702299 None:intergenic 60.0%
CGCAACCTCACCAGCAGGAG+GGG - chr1.1:19702626-19702645 None:intergenic 65.0%
CGTCGACGCCGCCAGAATGG+CGG + chr1.1:19702468-19702487 MS.gene31898:CDS 70.0%
!! CATTCTGGCGGCGTCGACGC+CGG - chr1.1:19702467-19702486 None:intergenic 70.0%
CCAACCACCACCACCGGCGC+CGG + chr1.1:19702445-19702464 MS.gene31898:CDS 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG + chr1.1:19702465-19702484 MS.gene31898:CDS 75.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG - chr1.1:19702448-19702467 None:intergenic 80.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG - chr1.1:19702452-19702471 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG - chr1.1:19702455-19702474 None:intergenic 85.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG - chr1.1:19702461-19702480 None:intergenic 90.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG - chr1.1:19702458-19702477 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 19702247 19704220 19702247 ID=MS.gene31898
chr1.1 mRNA 19702247 19704220 19702247 ID=MS.gene31898.t1;Parent=MS.gene31898
chr1.1 exon 19702247 19704220 19702247 ID=MS.gene31898.t1.exon1;Parent=MS.gene31898.t1
chr1.1 CDS 19702247 19704220 19702247 ID=cds.MS.gene31898.t1;Parent=MS.gene31898.t1
Gene Sequence

>MS.gene31898

ATGAATCCTCATAATCCAAACCAAACATTTCCATCAGCACCCCCTGGTATTCCTTTTCCTATGCTTACACCGAAGCAAGAGCCTCGGGATGAACCAACGCAAGAATTTCAATATCCAAACCTAGAAAATTTACCGAACCAAAATCTAAACCTAAATCTAAGTCTGAACCTAGATTTTGTTTCTCAAGGGCTAGAACAACCAACCACCACCACCGGCGCCGGCGTCGACGCCGCCAGAATGGCGGAGATTTTCCGACGCTCATTCACTGAAGGATTACAACGACAAATCCAAAACAATGATGCTGTTGATGAAAATCCAGATGCAAATGCAAGAGCTATTGTTCCGGTTCCTGCTGGTGAGAATAATTACCATAATGCCCCTCCTGCTGGTGAGGTTGCGAATGTACGGAAACATAAAGAGCTTGTTCGAATGACGGATGTTGGGTTACCGGATCAGCGTCAGTTTCGGGACGTTGTTAGGAGGACGAGGATGGTTTATGATTCGGTTCGTGTTTTGGCTATGGCTGAAGAAGAAGGGAATTTTAATGTTAGGAGAGTGAGAAGTGATTTGAAAGCTTCTACTACGATGAGGAGTCGAGGATTGTGGCTGAATCGCGATAAGAGGATTGTTGGCGCAATTCCTGGGATTTGTATTGGTGATGTGTTTTTGTATAGGATGGAGTTGTGTGTTGTTGGTTTACATGGTCAACCTCAAGCTGGGATTGATTATTTGCCGGGGAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGGTATGAGGATGATGTTGATGAAGGTGATGTTATTATTTACTCGGGTCATGGTGGACAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGCTGGAAGGTGGGAATCTTGCTATGGAGAGGAGTATGCATTATGGGATTGAGGTAAGGGTTATTCGCGGTGTGAGGTATGAAGGTACTTCTTCGACTTCGGGTAAGGTTTATGTTTATGATGGATTGTATAGGATTATTGAATGCTGGTTTGATGTTGGTAAAAGTGGTTTTGGTGTTTTTAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTTTAAAGGAGGCTTTTTTACTTAGGAGAGATCCTTTGTGTTATAAACCTATGTGTGTTATATCTCTTGATATTTCAAAGGGTATGGAGCGTGTCGGTATAAGGCTTTTTAATGATATTGATAAATGTAATGATCCGATGTGTTTTGAGTATCTTCCTAGGGCTACTTTTCCACACTTTGTGTTTCATGAAAGTGGGAATGCGACAGGTTGTCAATGTGAGGGCTTTTGTGGGGAAGGATGTTTTTGTTTCATAAAGAATGGAAATGACTTTCCTTACAGTCAAAGCGGGCTTCTCTTGAAAGGAAAGCCGGTCATTTTTGAATGTGGTCCTTCTTGTAGTTGTCCGCCTCATTGTCGGAACCGTGTTACACAAAAAGGGCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGTGCATTTATATGCGAGTACACTGGGGTTGTTCTGACAAGGGAGCAATCAGAAATTATGACCATGAGTGGTGATTCATTAATATATCCGAATCGTTTTTCAAACAGGTGGACGGAATGGGGTAATTTATCTCTGATTCAAGATGGTTATGTGCCTCCTTCGTATCCATCAATTCCTCCTTTGGATTTTTCTCTTGATGTATCCAGAATGAGGAATGTGGCTTGCTATATAAGTCATAGCTCAACTCCTAATGTGATGGTTCAGTTTGTTTTGTATGATCATAATAATTTGATGTTCCCTCACATTATGCTGTTTGCGATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGATTATGGTGTAGCTGATGATGAGTTGACTGGCAAGCTCGTAATATGCAACTGA
Protein sequence

>MS.gene31898.t1

MNPHNPNQTFPSAPPGIPFPMLTPKQEPRDEPTQEFQYPNLENLPNQNLNLNLSLNLDFVSQGLEQPTTTTGAGVDAARMAEIFRRSFTEGLQRQIQNNDAVDENPDANARAIVPVPAGENNYHNAPPAGEVANVRKHKELVRMTDVGLPDQRQFRDVVRRTRMVYDSVRVLAMAEEEGNFNVRRVRSDLKASTTMRSRGLWLNRDKRIVGAIPGICIGDVFLYRMELCVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSTSGKVYVYDGLYRIIECWFDVGKSGFGVFKFKLWRIDGQAKMGSLILKEAFLLRRDPLCYKPMCVISLDISKGMERVGIRLFNDIDKCNDPMCFEYLPRATFPHFVFHESGNATGCQCEGFCGEGCFCFIKNGNDFPYSQSGLLLKGKPVIFECGPSCSCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQSEIMTMSGDSLIYPNRFSNRWTEWGNLSLIQDGYVPPSYPSIPPLDFSLDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLREFSLDYGVADDELTGKLVICN