AlfalfaGEDB | MS.gene31968

M. sativa cultivar XinJiangDaYe / MS.gene31968

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31968.t1	XP_013457026.1	90.3	103	6	1	1	99	405	507	3.70E-47	197.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31968.t1	Q2MHE4	43.9	66	33	1	1	62	289	354	5.8e-09	61.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31968.t1	A0A072UMY7	90.3	103	6	1	1	99	405	507	2.7e-47	197.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31968.t1	MTR_4g088750	90.291	103	6	1	1	99	405	507	1.83e-60	192
MS.gene31968.t1	MTR_4g088755	80.556	108	15	2	1	102	244	351	1.58e-55	176
MS.gene31968.t1	MTR_4g088745	80.556	108	15	2	1	102	249	356	1.75e-55	176
MS.gene31968.t1	MTR_2g013900	81.818	88	16	0	12	99	381	468	2.62e-46	154
MS.gene31968.t1	MTR_4g105770	50.000	50	25	0	9	58	273	322	3.51e-12	61.2
MS.gene31968.t1	MTR_4g132860	42.424	66	34	1	1	62	283	348	9.08e-12	60.1
MS.gene31968.t1	MTR_3g078000	52.000	50	24	0	9	58	272	321	5.75e-11	57.8

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31968.t1	AT5G58950	52.941	102	37	1	9	99	424	525	6.33e-29	108
MS.gene31968.t1	AT3G46930	43.750	96	45	1	12	98	384	479	2.00e-20	84.7
MS.gene31968.t1	AT3G46930	53.623	69	32	0	12	80	419	487	9.07e-19	80.1
MS.gene31968.t1	AT1G62400	43.939	66	33	1	1	62	289	354	4.20e-11	58.2

Showing 1 to 4 of 4 entries

Previous1Next

Find 18 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCCTGCTACAAAACCCTTG+TGG	0.681062	4.3:-24425322	MS.gene31968:CDS
AGTCATGCACATCATAGTAG+TGG	0.636550	4.3:-24425256	MS.gene31968:CDS
ATAGCTGGTGGGCAGTTTGA+AGG	0.484794	4.3:+24425460	None:intergenic
ATTAAAGCTCGCATAGCTGG+TGG	0.550688	4.3:+24425448	None:intergenic
CAAAAGGCCTGATTTCTGGC+AGG	0.545944	4.3:-24425398	MS.gene31968:CDS
CAGAATATACATGTAAATTT+TGG	0.177770	4.3:+24425220	None:intergenic
CGGACAAAAGGCCTGATTTC+TGG	0.216275	4.3:-24425402	MS.gene31968:CDS
CTGGCAGGTTGTTAAGGTGT+TGG	0.457283	4.3:-24425383	MS.gene31968:CDS
GAATCTTCGCTTGCTCGTGA+TGG	0.512691	4.3:-24425352	MS.gene31968:CDS
GAGCTTTAATTGAGCAATGT+TGG	0.506203	4.3:-24425435	MS.gene31968:CDS

Showing 1 to 10 of 18 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAAAAGGGCTTCTTCAT+TGG	-	chr4.3:24425756-24425775	MS.gene31968:intron	30.0%
CGTGTCAAAAAATTAAGAAG+GGG	+	chr4.3:24425387-24425406	None:intergenic	30.0%
GCGTGTCAAAAAATTAAGAA+GGG	+	chr4.3:24425388-24425407	None:intergenic	30.0%
TGCGTGTCAAAAAATTAAGA+AGG	+	chr4.3:24425389-24425408	None:intergenic	30.0%
GATGTGGTATTCAGAATTCA+AGG	-	chr4.3:24425555-24425574	MS.gene31968:intron	35.0%
GTGGCCAAGATCATAAAAAA+GGG	-	chr4.3:24425744-24425763	MS.gene31968:intron	35.0%
TGTGGCCAAGATCATAAAAA+AGG	-	chr4.3:24425743-24425762	MS.gene31968:intron	35.0%
AGTCATGCACATCATAGTAG+TGG	-	chr4.3:24425791-24425810	MS.gene31968:intron	40.0%
GGGCAGTTTGAAGGAATAAT+AGG	+	chr4.3:24425581-24425600	None:intergenic	40.0%
TCAATTAAAGCTCGCATAGC+TGG	+	chr4.3:24425605-24425624	None:intergenic	40.0%

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	24425219	24425850	24425219	ID=MS.gene31968
chr4.3	mRNA	24425219	24425850	24425219	ID=MS.gene31968.t1;Parent=MS.gene31968
chr4.3	exon	24425824	24425850	24425824	ID=MS.gene31968.t1.exon1;Parent=MS.gene31968.t1
chr4.3	CDS	24425824	24425850	24425824	ID=cds.MS.gene31968.t1;Parent=MS.gene31968.t1
chr4.3	exon	24425219	24425500	24425219	ID=MS.gene31968.t1.exon2;Parent=MS.gene31968.t1
chr4.3	CDS	24425219	24425500	24425219	ID=cds.MS.gene31968.t1;Parent=MS.gene31968.t1

Gene Sequence

>MS.gene31968

ATGACAATGTTACAAGCACCGAAGCAAGTAAGTCTTTTTTTCAAATTCAAATTTGAAAAGATTTAAATTGAATATTGAATGAGAGTAAAATTTAGATGATAATACAAATATATATTATATATTATCTAATTATAAAACTTAATGTCTACCAAAAATACAATCTTACCCCTTCTTAATTTTTTGACACGCATCTTATTTTGATAAAAGGAGGGCCTAAACCCAAATTATGCATCTTATTTTGAATAAAAGTTGAAGTTTTTCAGCCATCTATATTATTTTTTTCTTTTGAAATTAAAATGACCAGTTTATGTTTACTTATGCAATTTTAATACTCGTGATGTGGTATTCAGAATTCAAGGCCTATTATTCCTTCAAACTGCCCACCAGCTATGCGAGCTTTAATTGAGCAATGTTGGTCCTTGAATCCGGACAAAAGGCCTGATTTCTGGCAGGTTGTTAAGGTGTTGGAACAATTTGAATCTTCGCTTGCTCGTGATGGAACATTGACCCTGCTACAAAACCCTTGTGGCCAAGATCATAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTTAGTCATGCACATCATAGTAGTGGTCCTGTGCCTAAACCAAAATTTACATGTATATTCTGA

Protein sequence

>MS.gene31968.t1

MTMLQAPKQNSRPIIPSNCPPAMRALIEQCWSLNPDKRPDFWQVVKVLEQFESSLARDGTLTLLQNPCGQDHKKGLLHWIQKLSHAHHSSGPVPKPKFTCIF