Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31989.t1 | KEH31034.1 | 82.8 | 297 | 28 | 2 | 1 | 297 | 1 | 274 | 6.20E-119 | 437.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31989.t1 | Q1PFR7 | 36.7 | 166 | 94 | 3 | 45 | 199 | 100 | 265 | 2.8e-19 | 97.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31989.t1 | A0A072UMM3 | 82.8 | 297 | 28 | 2 | 1 | 297 | 1 | 274 | 4.4e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31989.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31989.t1 | MTR_4g088605 | 83.502 | 297 | 26 | 2 | 1 | 297 | 1 | 274 | 2.32e-170 | 473 |
| MS.gene31989.t1 | MTR_7g059330 | 42.105 | 95 | 54 | 1 | 100 | 193 | 618 | 712 | 8.35e-19 | 87.0 |
| MS.gene31989.t1 | MTR_7g083700 | 33.918 | 171 | 98 | 6 | 98 | 265 | 119 | 277 | 1.83e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31989.t1 | AT1G28300 | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 7.00e-25 | 102 |
| MS.gene31989.t1 | AT3G24650 | 34.783 | 161 | 94 | 4 | 100 | 256 | 566 | 719 | 3.13e-19 | 88.2 |
| MS.gene31989.t1 | AT3G26790 | 35.294 | 119 | 75 | 2 | 98 | 214 | 84 | 202 | 4.86e-19 | 85.9 |
Find 59 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAGTCGACTAATAATT+TGG | 0.175655 | 4.3:-24619963 | MS.gene31989:CDS |
| TTCCATAGGTATTGGATTAA+TGG | 0.179633 | 4.3:-24620704 | MS.gene31989:intron |
| TTGCAGTATTATTGGTTTCT+TGG | 0.218735 | 4.3:+24619912 | None:intergenic |
| TACTGCAATGCCACCTATAT+TGG | 0.238790 | 4.3:-24619897 | MS.gene31989:CDS |
| AGGTGGCATTGCAGTATTAT+TGG | 0.274469 | 4.3:+24619904 | None:intergenic |
| TGCAGTATTATTGGTTTCTT+GGG | 0.336728 | 4.3:+24619913 | None:intergenic |
| ACTTTATTCCTCTTCTTTGA+TGG | 0.344473 | 4.3:-24621736 | MS.gene31989:CDS |
| TTTACAGTCACCTTTCCATC+TGG | 0.368295 | 4.3:+24621483 | None:intergenic |
| TGGTTTCTTGGGCGACTGAT+TGG | 0.387076 | 4.3:+24619924 | None:intergenic |
| TATATTGGACCATACCGTTT+TGG | 0.393571 | 4.3:-24619882 | MS.gene31989:CDS |
| TATTAGTCGACTGAATTTGT+TGG | 0.408347 | 4.3:+24619969 | None:intergenic |
| TAAAACTAGAATGTATATTC+TGG | 0.416222 | 4.3:-24620681 | MS.gene31989:CDS |
| ATCCCTTCTTTGCTAGGGGC+TGG | 0.418097 | 4.3:+24620882 | None:intergenic |
| CTTCAATCCCTTCTTTGCTA+GGG | 0.422481 | 4.3:+24620877 | None:intergenic |
| CTTCCAGCCCCTAGCAAAGA+AGG | 0.423970 | 4.3:-24620885 | MS.gene31989:CDS |
| CTCCCATGCATAGTTTGTAA+TGG | 0.426934 | 4.3:+24620542 | None:intergenic |
| TCTTGGGCGACTGATTGGTT+TGG | 0.430360 | 4.3:+24619929 | None:intergenic |
| CTATGCATGGGAGATTATCT+AGG | 0.431047 | 4.3:-24620532 | MS.gene31989:CDS |
| AAAACGGTATGGTCCAATAT+AGG | 0.432686 | 4.3:+24619884 | None:intergenic |
| ACTTCAATCCCTTCTTTGCT+AGG | 0.433841 | 4.3:+24620876 | None:intergenic |
| AAGAGCGATGTTAAGAACTA+TGG | 0.459102 | 4.3:-24621345 | MS.gene31989:CDS |
| CTTTATTCCTCTTCTTTGAT+GGG | 0.462737 | 4.3:-24621735 | MS.gene31989:CDS |
| ATATATATTCTGGTCGTGAA+TGG | 0.483145 | 4.3:-24620842 | MS.gene31989:CDS |
| ATGTATATTCTGGAGGATAC+AGG | 0.488201 | 4.3:-24620671 | MS.gene31989:intron |
| TCCTCAACTTGGAGTTGAAA+GGG | 0.488533 | 4.3:-24621679 | MS.gene31989:CDS |
| TGGGCGACTGATTGGTTTGG+TGG | 0.491784 | 4.3:+24619932 | None:intergenic |
| AGATTATCTAGGCCTTTATG+AGG | 0.503786 | 4.3:-24620521 | MS.gene31989:CDS |
| AAACCATTACAAACTATGCA+TGG | 0.506884 | 4.3:-24620545 | MS.gene31989:CDS |
| TTCAATCCCTTCTTTGCTAG+GGG | 0.508172 | 4.3:+24620878 | None:intergenic |
| TTACAGTCACCTTTCCATCT+GGG | 0.509432 | 4.3:+24621484 | None:intergenic |
| ATCATTACCATCTACCAAAA+CGG | 0.511373 | 4.3:+24619868 | None:intergenic |
| CATCGAGGAAATTGTATGCA+TGG | 0.513461 | 4.3:+24621773 | None:intergenic |
| TCCTTGCCTTGGTCTGCACA+AGG | 0.515897 | 4.3:+24620016 | None:intergenic |
| CTCCTCAACTTGGAGTTGAA+AGG | 0.517571 | 4.3:-24621680 | MS.gene31989:CDS |
| ATCGAGGAAATTGTATGCAT+GGG | 0.519150 | 4.3:+24621774 | None:intergenic |
| GGAGTAGTTTGAATTATGAA+AGG | 0.529192 | 4.3:+24621699 | None:intergenic |
| ATTCAAACTACTCCTCAACT+TGG | 0.533290 | 4.3:-24621690 | MS.gene31989:CDS |
| TGTTGGTTGGCCAAGTCTGA+TGG | 0.537691 | 4.3:+24619986 | None:intergenic |
| TCCCTTTCAACTCCAAGTTG+AGG | 0.546205 | 4.3:+24621678 | None:intergenic |
| CGATGAACAACAAAGCAGCT+TGG | 0.554733 | 4.3:-24619828 | MS.gene31989:CDS |
| AAAATTCAAATAGAGGGAGG+TGG | 0.561158 | 4.3:-24620916 | MS.gene31989:intron |
| ACTTGGAGTTGAAAGGGAAG+AGG | 0.563033 | 4.3:-24621673 | MS.gene31989:CDS |
| AACCATTACAAACTATGCAT+GGG | 0.584630 | 4.3:-24620544 | MS.gene31989:CDS |
| AGTCGACTGAATTTGTTGGT+TGG | 0.588883 | 4.3:+24619973 | None:intergenic |
| TACCATCTACCAAAACGGTA+TGG | 0.590397 | 4.3:+24619873 | None:intergenic |
| GGCTTGTGATCTATCGACAC+TGG | 0.594889 | 4.3:-24620047 | MS.gene31989:CDS |
| GAAGAGGAATAAAGTTCATG+AGG | 0.601671 | 4.3:+24621744 | None:intergenic |
| ACTTTGTCCCATCAAAGAAG+AGG | 0.603667 | 4.3:+24621728 | None:intergenic |
| TTGGTAGATGGTAATGATGG+TGG | 0.608724 | 4.3:-24619863 | MS.gene31989:CDS |
| AACTAGAATGTATATTCTGG+AGG | 0.612428 | 4.3:-24620678 | MS.gene31989:CDS |
| TTCCAGCCCCTAGCAAAGAA+GGG | 0.619594 | 4.3:-24620884 | MS.gene31989:CDS |
| GCAAAATTGCTAGAGAACAA+AGG | 0.622012 | 4.3:-24621623 | MS.gene31989:CDS |
| ACCTTGTGCAGACCAAGGCA+AGG | 0.622413 | 4.3:-24620017 | MS.gene31989:CDS |
| CTCTTACCTTGTGCAGACCA+AGG | 0.626902 | 4.3:-24620022 | MS.gene31989:CDS |
| TGGTCGCATTGTCCTCCCAA+AGG | 0.635548 | 4.3:-24621325 | MS.gene31989:intron |
| ACGGTATGGTCCAATATAGG+TGG | 0.655667 | 4.3:+24619887 | None:intergenic |
| GTAGATGGTAATGATGGTGG+TGG | 0.655874 | 4.3:-24619860 | MS.gene31989:CDS |
| TTCATGAGGTTGATTCATCG+AGG | 0.675142 | 4.3:+24621758 | None:intergenic |
| AAGAAGCCCTCACCTTTGGG+AGG | 0.679981 | 4.3:+24621313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTTTTGTTCTTT+TGG | - | chr4.3:24620584-24620603 | MS.gene31989:intron | 10.0% |
| !!! | TTTTTTATAAATCATAACAA+CGG | + | chr4.3:24620355-24620374 | None:intergenic | 10.0% |
| !!! | TTTTTATAAATCATAACAAC+GGG | + | chr4.3:24620354-24620373 | None:intergenic | 15.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | - | chr4.3:24620874-24620893 | MS.gene31989:CDS | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | - | chr4.3:24620703-24620722 | MS.gene31989:intron | 20.0% |
| !!! | TACAATCATTTTTTTCATCT+GGG | + | chr4.3:24621255-24621274 | None:intergenic | 20.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | + | chr4.3:24621769-24621788 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | - | chr4.3:24621592-24621611 | MS.gene31989:CDS | 25.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | - | chr4.3:24619908-24619927 | MS.gene31989:CDS | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | - | chr4.3:24620978-24620997 | MS.gene31989:intron | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | - | chr4.3:24620114-24620133 | MS.gene31989:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | - | chr4.3:24620979-24620998 | MS.gene31989:intron | 25.0% |
| !!! | CTACAATCATTTTTTTCATC+TGG | + | chr4.3:24621256-24621275 | None:intergenic | 25.0% |
| !!! | TATTGTTTTACAACTCACAA+TGG | + | chr4.3:24621420-24621439 | None:intergenic | 25.0% |
| AAACCATTACAAACTATGCA+TGG | - | chr4.3:24621010-24621029 | MS.gene31989:intron | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | + | chr4.3:24620917-24620936 | None:intergenic | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | - | chr4.3:24621011-24621030 | MS.gene31989:intron | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | - | chr4.3:24620877-24620896 | MS.gene31989:CDS | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | - | chr4.3:24620542-24620561 | MS.gene31989:CDS | 30.0% | |
| ACTTTATTCCTCTTCTTTGA+TGG | - | chr4.3:24619819-24619838 | MS.gene31989:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | + | chr4.3:24620826-24620845 | None:intergenic | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | + | chr4.3:24621317-24621336 | None:intergenic | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | - | chr4.3:24620713-24620732 | MS.gene31989:intron | 30.0% | |
| ATCATTACCATCTACCAAAA+CGG | + | chr4.3:24621690-24621709 | None:intergenic | 30.0% | |
| CTTTATTCCTCTTCTTTGAT+GGG | - | chr4.3:24619820-24619839 | MS.gene31989:CDS | 30.0% | |
| GGAGTAGTTTGAATTATGAA+AGG | + | chr4.3:24619859-24619878 | None:intergenic | 30.0% | |
| GTATAAACTGGAAATTCCAT+AGG | - | chr4.3:24620837-24620856 | MS.gene31989:CDS | 30.0% | |
| TACCATTAATCCAATACCTA+TGG | + | chr4.3:24620856-24620875 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | + | chr4.3:24621589-24621608 | None:intergenic | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | - | chr4.3:24620633-24620652 | MS.gene31989:intron | 30.0% | |
| TGAGGACGAACTTAAAAATT+TGG | - | chr4.3:24621052-24621071 | MS.gene31989:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | - | chr4.3:24620632-24620651 | MS.gene31989:intron | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | - | chr4.3:24620825-24620844 | MS.gene31989:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | - | chr4.3:24620942-24620961 | MS.gene31989:intron | 30.0% |
| ! | TGTTTCAGTTCTCATGATTT+TGG | - | chr4.3:24620941-24620960 | MS.gene31989:intron | 30.0% |
| !! | TGCAGTATTATTGGTTTCTT+GGG | + | chr4.3:24621645-24621664 | None:intergenic | 30.0% |
| !! | TTCCATAGGTATTGGATTAA+TGG | - | chr4.3:24620851-24620870 | MS.gene31989:CDS | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | + | chr4.3:24621646-24621665 | None:intergenic | 30.0% |
| !!! | AAACATGTGGAGTTTTTTCT+TGG | + | chr4.3:24620044-24620063 | None:intergenic | 30.0% |
| !!! | AACATGTGGAGTTTTTTCTT+GGG | + | chr4.3:24620043-24620062 | None:intergenic | 30.0% |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | + | chr4.3:24621049-24621068 | None:intergenic | 30.0% |
| AAAACGGTATGGTCCAATAT+AGG | + | chr4.3:24621674-24621693 | None:intergenic | 35.0% | |
| AAAATTCAAATAGAGGGAGG+TGG | - | chr4.3:24620639-24620658 | MS.gene31989:intron | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | - | chr4.3:24620210-24620229 | MS.gene31989:intron | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | - | chr4.3:24620843-24620862 | MS.gene31989:CDS | 35.0% | |
| AGATTATCTAGGCCTTTATG+AGG | - | chr4.3:24621034-24621053 | MS.gene31989:intron | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | - | chr4.3:24619865-24619884 | MS.gene31989:CDS | 35.0% | |
| GAAGAGGAATAAAGTTCATG+AGG | + | chr4.3:24619814-24619833 | None:intergenic | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | + | chr4.3:24621311-24621330 | None:intergenic | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | - | chr4.3:24619932-24619951 | MS.gene31989:CDS | 35.0% | |
| TATACCCATTAGAGTTTGGA+AGG | + | chr4.3:24620822-24620841 | None:intergenic | 35.0% | |
| ! | ACCTCCCTCTATTTGAATTT+TGG | + | chr4.3:24620640-24620659 | None:intergenic | 35.0% |
| ! | ATGTATATTCTGGAGGATAC+AGG | - | chr4.3:24620884-24620903 | MS.gene31989:CDS | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | + | chr4.3:24620639-24620658 | None:intergenic | 35.0% |
| ! | TATATTGGACCATACCGTTT+TGG | - | chr4.3:24621673-24621692 | MS.gene31989:CDS | 35.0% |
| !! | AGGGATTGAAGTCATTTTCA+AGG | - | chr4.3:24620690-24620709 | MS.gene31989:CDS | 35.0% |
| !! | GTTTTGGTAGATGGTAATGA+TGG | - | chr4.3:24621689-24621708 | MS.gene31989:CDS | 35.0% |
| !! | TGTGTCACTGTATTTTCGAA+AGG | + | chr4.3:24620505-24620524 | None:intergenic | 35.0% |
| ACTTCAATCCCTTCTTTGCT+AGG | + | chr4.3:24620682-24620701 | None:intergenic | 40.0% | |
| ACTTTGTCCCATCAAAGAAG+AGG | + | chr4.3:24619830-24619849 | None:intergenic | 40.0% | |
| AGGTGGCATTGCAGTATTAT+TGG | + | chr4.3:24621654-24621673 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | - | chr4.3:24620636-24620655 | MS.gene31989:intron | 40.0% | |
| CTATGCATGGGAGATTATCT+AGG | - | chr4.3:24621023-24621042 | MS.gene31989:intron | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | + | chr4.3:24620681-24620700 | None:intergenic | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | - | chr4.3:24621487-24621506 | MS.gene31989:intron | 40.0% | |
| GGAAAAAGAACCATCAGACT+TGG | - | chr4.3:24621559-24621578 | MS.gene31989:CDS | 40.0% | |
| TACCATCTACCAAAACGGTA+TGG | + | chr4.3:24621685-24621704 | None:intergenic | 40.0% | |
| TACTGCAATGCCACCTATAT+TGG | - | chr4.3:24621658-24621677 | MS.gene31989:CDS | 40.0% | |
| TCCTCAACTTGGAGTTGAAA+GGG | - | chr4.3:24619876-24619895 | MS.gene31989:CDS | 40.0% | |
| TCTGGGCTGTAAAAAACATG+TGG | + | chr4.3:24620057-24620076 | None:intergenic | 40.0% | |
| TTACAGTCACCTTTCCATCT+GGG | + | chr4.3:24620074-24620093 | None:intergenic | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | + | chr4.3:24620680-24620699 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | + | chr4.3:24620075-24620094 | None:intergenic | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | + | chr4.3:24621553-24621572 | None:intergenic | 40.0% |
| ! | CTCCCATGCATAGTTTGTAA+TGG | + | chr4.3:24621016-24621035 | None:intergenic | 40.0% |
| ! | TTCATGAGGTTGATTCATCG+AGG | + | chr4.3:24619800-24619819 | None:intergenic | 40.0% |
| ! | TTGGTAGATGGTAATGATGG+TGG | - | chr4.3:24621692-24621711 | MS.gene31989:CDS | 40.0% |
| ! | TTTTTACAGCCCAGATGGAA+AGG | - | chr4.3:24620062-24620081 | MS.gene31989:CDS | 40.0% |
| !! | AGTCGACTGAATTTGTTGGT+TGG | + | chr4.3:24621585-24621604 | None:intergenic | 40.0% |
| !!! | CATGTTTTTTACAGCCCAGA+TGG | - | chr4.3:24620057-24620076 | MS.gene31989:CDS | 40.0% |
| ACGGTATGGTCCAATATAGG+TGG | + | chr4.3:24621671-24621690 | None:intergenic | 45.0% | |
| ACTTGGAGTTGAAAGGGAAG+AGG | - | chr4.3:24619882-24619901 | MS.gene31989:CDS | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | + | chr4.3:24620248-24620267 | None:intergenic | 45.0% | |
| CATGAACTCTTCTTTGTGCG+AGG | - | chr4.3:24621462-24621481 | MS.gene31989:intron | 45.0% | |
| CGATGAACAACAAAGCAGCT+TGG | - | chr4.3:24621727-24621746 | MS.gene31989:CDS | 45.0% | |
| CTCCTCAACTTGGAGTTGAA+AGG | - | chr4.3:24619875-24619894 | MS.gene31989:CDS | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | - | chr4.3:24620815-24620834 | MS.gene31989:intron | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | - | chr4.3:24620252-24620271 | MS.gene31989:intron | 45.0% | |
| TCCCTTTCAACTCCAAGTTG+AGG | + | chr4.3:24619880-24619899 | None:intergenic | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | - | chr4.3:24620814-24620833 | MS.gene31989:intron | 45.0% | |
| !! | GACCATACCGTTTTGGTAGA+TGG | - | chr4.3:24621680-24621699 | MS.gene31989:CDS | 45.0% |
| !! | GTAGATGGTAATGATGGTGG+TGG | - | chr4.3:24621695-24621714 | MS.gene31989:CDS | 45.0% |
| !! | TTTAATTAATTATATTTATG+TGG | - | chr4.3:24620096-24620115 | MS.gene31989:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | + | chr4.3:24621090-24621109 | None:intergenic | 5.0% |
| CATTGTCCTCCCAAAGGTGA+GGG | - | chr4.3:24620236-24620255 | MS.gene31989:intron | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | - | chr4.3:24621533-24621552 | MS.gene31989:CDS | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | + | chr4.3:24620249-24620268 | None:intergenic | 50.0% | |
| GGCTTGTGATCTATCGACAC+TGG | - | chr4.3:24621508-24621527 | MS.gene31989:CDS | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | - | chr4.3:24620251-24620270 | MS.gene31989:intron | 50.0% | |
| TGGTTTCTTGGGCGACTGAT+TGG | + | chr4.3:24621634-24621653 | None:intergenic | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | - | chr4.3:24620671-24620690 | MS.gene31989:intron | 50.0% | |
| ! | TCTGGGAAGTGTGCATTGAC+TGG | + | chr4.3:24621238-24621257 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | + | chr4.3:24621629-24621648 | None:intergenic | 50.0% |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | + | chr4.3:24621572-24621591 | None:intergenic | 50.0% |
| AAGAAGCCCTCACCTTTGGG+AGG | + | chr4.3:24620245-24620264 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | - | chr4.3:24621538-24621557 | MS.gene31989:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | + | chr4.3:24620676-24620695 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | - | chr4.3:24620670-24620689 | MS.gene31989:intron | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | - | chr4.3:24620235-24620254 | MS.gene31989:intron | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | + | chr4.3:24621542-24621561 | None:intergenic | 55.0% | |
| TGGTCGCATTGTCCTCCCAA+AGG | - | chr4.3:24620230-24620249 | MS.gene31989:intron | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | + | chr4.3:24621626-24621645 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24619784 | 24621793 | 24619784 | ID=MS.gene31989 |
| chr4.3 | mRNA | 24619784 | 24621793 | 24619784 | ID=MS.gene31989.t1;Parent=MS.gene31989 |
| chr4.3 | exon | 24621494 | 24621793 | 24621494 | ID=MS.gene31989.t1.exon1;Parent=MS.gene31989.t1 |
| chr4.3 | CDS | 24621494 | 24621793 | 24621494 | ID=cds.MS.gene31989.t1;Parent=MS.gene31989.t1 |
| chr4.3 | exon | 24621326 | 24621400 | 24621326 | ID=MS.gene31989.t1.exon2;Parent=MS.gene31989.t1 |
| chr4.3 | CDS | 24621326 | 24621400 | 24621326 | ID=cds.MS.gene31989.t1;Parent=MS.gene31989.t1 |
| chr4.3 | exon | 24620828 | 24620925 | 24620828 | ID=MS.gene31989.t1.exon3;Parent=MS.gene31989.t1 |
| chr4.3 | CDS | 24620828 | 24620925 | 24620828 | ID=cds.MS.gene31989.t1;Parent=MS.gene31989.t1 |
| chr4.3 | exon | 24620672 | 24620718 | 24620672 | ID=MS.gene31989.t1.exon4;Parent=MS.gene31989.t1 |
| chr4.3 | CDS | 24620672 | 24620718 | 24620672 | ID=cds.MS.gene31989.t1;Parent=MS.gene31989.t1 |
| chr4.3 | exon | 24620504 | 24620577 | 24620504 | ID=MS.gene31989.t1.exon5;Parent=MS.gene31989.t1 |
| chr4.3 | CDS | 24620504 | 24620577 | 24620504 | ID=cds.MS.gene31989.t1;Parent=MS.gene31989.t1 |
| chr4.3 | exon | 24619784 | 24620086 | 24619784 | ID=MS.gene31989.t1.exon6;Parent=MS.gene31989.t1 |
| chr4.3 | CDS | 24619784 | 24620086 | 24619784 | ID=cds.MS.gene31989.t1;Parent=MS.gene31989.t1 |
| Gene Sequence |
| Protein sequence |
