Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32017.t1 | ABN05718.1 | 57.3 | 745 | 23 | 1 | 1 | 450 | 56 | 800 | 3.30E-217 | 764.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32017.t1 | Q9SZL8 | 35.6 | 239 | 150 | 4 | 94 | 331 | 420 | 655 | 9.4e-35 | 149.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32017.t1 | A2Q1A1 | 57.3 | 745 | 23 | 1 | 1 | 450 | 56 | 800 | 2.4e-217 | 764.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32017.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32017.t1 | MTR_8g465780 | 62.791 | 129 | 48 | 0 | 121 | 249 | 1 | 129 | 2.68e-54 | 179 |
| MS.gene32017.t1 | MTR_6g445180 | 44.444 | 117 | 64 | 1 | 329 | 445 | 26 | 141 | 3.07e-27 | 107 |
| MS.gene32017.t1 | MTR_4g080290 | 55.263 | 76 | 33 | 1 | 26 | 100 | 16 | 91 | 9.71e-21 | 87.4 |
| MS.gene32017.t1 | MTR_6g060410 | 55.263 | 76 | 33 | 1 | 26 | 100 | 76 | 151 | 7.33e-20 | 87.8 |
| MS.gene32017.t1 | MTR_1g013060 | 48.571 | 70 | 35 | 1 | 26 | 94 | 13 | 82 | 4.13e-15 | 75.1 |
| MS.gene32017.t1 | MTR_6g022070 | 35.043 | 117 | 74 | 2 | 97 | 212 | 49 | 164 | 3.01e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32017.t1 | AT4G38180 | 35.417 | 240 | 151 | 4 | 94 | 332 | 420 | 656 | 3.00e-37 | 145 |
| MS.gene32017.t1 | AT2G27110 | 33.906 | 233 | 141 | 5 | 94 | 322 | 222 | 445 | 2.90e-34 | 136 |
| MS.gene32017.t1 | AT2G27110 | 34.842 | 221 | 133 | 4 | 94 | 310 | 367 | 580 | 4.15e-34 | 136 |
| MS.gene32017.t1 | AT2G27110 | 34.842 | 221 | 133 | 4 | 94 | 310 | 367 | 580 | 4.15e-34 | 136 |
| MS.gene32017.t1 | AT4G15090 | 35.185 | 216 | 138 | 2 | 95 | 310 | 397 | 610 | 1.02e-33 | 135 |
| MS.gene32017.t1 | AT4G15090 | 35.185 | 216 | 138 | 2 | 95 | 310 | 397 | 610 | 1.02e-33 | 135 |
| MS.gene32017.t1 | AT4G15090 | 35.185 | 216 | 138 | 2 | 95 | 310 | 397 | 610 | 1.02e-33 | 135 |
| MS.gene32017.t1 | AT4G15090 | 35.185 | 216 | 138 | 2 | 95 | 310 | 397 | 610 | 1.02e-33 | 135 |
| MS.gene32017.t1 | AT4G15090 | 35.185 | 216 | 138 | 2 | 95 | 310 | 397 | 610 | 1.02e-33 | 135 |
| MS.gene32017.t1 | AT3G06250 | 35.065 | 231 | 142 | 4 | 92 | 320 | 491 | 715 | 6.34e-31 | 126 |
| MS.gene32017.t1 | AT3G06250 | 35.065 | 231 | 142 | 4 | 92 | 320 | 491 | 715 | 6.34e-31 | 126 |
| MS.gene32017.t1 | AT3G06250 | 35.065 | 231 | 142 | 4 | 92 | 320 | 491 | 715 | 6.34e-31 | 126 |
| MS.gene32017.t1 | AT4G38170 | 33.333 | 216 | 141 | 3 | 94 | 308 | 185 | 398 | 6.80e-31 | 125 |
| MS.gene32017.t1 | AT4G19990 | 31.441 | 229 | 155 | 2 | 96 | 323 | 346 | 573 | 3.18e-29 | 121 |
| MS.gene32017.t1 | AT4G19990 | 31.441 | 229 | 155 | 2 | 96 | 323 | 346 | 573 | 3.18e-29 | 121 |
| MS.gene32017.t1 | AT4G19990 | 31.441 | 229 | 155 | 2 | 96 | 323 | 289 | 516 | 3.21e-29 | 121 |
| MS.gene32017.t1 | AT4G19990 | 31.441 | 229 | 155 | 2 | 96 | 323 | 346 | 573 | 3.30e-29 | 121 |
| MS.gene32017.t1 | AT4G19990 | 31.441 | 229 | 155 | 2 | 96 | 323 | 360 | 587 | 3.49e-29 | 121 |
| MS.gene32017.t1 | AT4G19990 | 31.441 | 229 | 155 | 2 | 96 | 323 | 346 | 573 | 4.65e-29 | 120 |
| MS.gene32017.t1 | AT4G19990 | 31.441 | 229 | 155 | 2 | 96 | 323 | 346 | 573 | 4.65e-29 | 120 |
| MS.gene32017.t1 | AT5G18960 | 35.808 | 229 | 131 | 5 | 98 | 320 | 521 | 739 | 2.20e-28 | 119 |
| MS.gene32017.t1 | AT5G18960 | 35.808 | 229 | 131 | 5 | 98 | 320 | 521 | 739 | 2.20e-28 | 119 |
| MS.gene32017.t1 | AT1G76320 | 33.641 | 217 | 140 | 3 | 95 | 311 | 334 | 546 | 7.77e-28 | 117 |
| MS.gene32017.t1 | AT1G76320 | 33.641 | 217 | 140 | 3 | 95 | 311 | 334 | 546 | 9.45e-28 | 117 |
| MS.gene32017.t1 | AT1G76320 | 33.641 | 217 | 140 | 3 | 95 | 311 | 334 | 546 | 9.45e-28 | 117 |
| MS.gene32017.t1 | AT1G76320 | 33.641 | 217 | 140 | 3 | 95 | 311 | 334 | 546 | 1.18e-27 | 116 |
| MS.gene32017.t1 | AT3G22170 | 30.455 | 220 | 151 | 2 | 92 | 311 | 403 | 620 | 3.45e-26 | 112 |
| MS.gene32017.t1 | AT3G22170 | 30.455 | 220 | 151 | 2 | 92 | 311 | 403 | 620 | 3.45e-26 | 112 |
| MS.gene32017.t1 | AT2G32250 | 30.962 | 239 | 153 | 5 | 81 | 311 | 321 | 555 | 5.61e-26 | 111 |
| MS.gene32017.t1 | AT2G32250 | 30.962 | 239 | 153 | 5 | 81 | 311 | 321 | 555 | 6.42e-26 | 111 |
| MS.gene32017.t1 | AT2G32250 | 30.962 | 239 | 153 | 5 | 81 | 311 | 321 | 555 | 6.42e-26 | 111 |
| MS.gene32017.t1 | AT2G32250 | 30.962 | 239 | 153 | 5 | 81 | 311 | 321 | 555 | 6.79e-26 | 111 |
| MS.gene32017.t1 | AT2G32250 | 30.962 | 239 | 153 | 5 | 81 | 311 | 321 | 555 | 6.79e-26 | 111 |
| MS.gene32017.t1 | AT2G32250 | 30.962 | 239 | 153 | 5 | 81 | 311 | 321 | 555 | 6.79e-26 | 111 |
| MS.gene32017.t1 | AT2G32250 | 31.963 | 219 | 143 | 4 | 95 | 311 | 300 | 514 | 6.95e-26 | 111 |
| MS.gene32017.t1 | AT2G32250 | 31.963 | 219 | 143 | 4 | 95 | 311 | 300 | 514 | 7.07e-26 | 111 |
| MS.gene32017.t1 | AT1G80010 | 31.481 | 216 | 141 | 4 | 97 | 306 | 444 | 658 | 6.91e-24 | 105 |
| MS.gene32017.t1 | AT1G52520 | 31.651 | 218 | 138 | 5 | 98 | 306 | 420 | 635 | 6.53e-22 | 99.4 |
| MS.gene32017.t1 | AT1G10240 | 27.755 | 245 | 153 | 6 | 75 | 310 | 379 | 608 | 9.43e-20 | 92.4 |
| MS.gene32017.t1 | AT1G10240 | 27.755 | 245 | 153 | 6 | 75 | 310 | 379 | 608 | 9.43e-20 | 92.4 |
| MS.gene32017.t1 | AT5G28530 | 28.302 | 212 | 141 | 6 | 97 | 306 | 353 | 555 | 1.99e-14 | 75.9 |
| MS.gene32017.t1 | AT5G28530 | 28.302 | 212 | 141 | 6 | 97 | 306 | 416 | 618 | 2.59e-14 | 75.9 |
| MS.gene32017.t1 | AT5G28530 | 28.774 | 212 | 136 | 7 | 97 | 306 | 353 | 551 | 3.71e-14 | 75.1 |
| MS.gene32017.t1 | AT5G28530 | 28.774 | 212 | 136 | 7 | 97 | 306 | 416 | 614 | 5.28e-14 | 74.7 |
| MS.gene32017.t1 | AT5G28530 | 28.774 | 212 | 136 | 7 | 97 | 306 | 416 | 614 | 5.28e-14 | 74.7 |
Find 67 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAACTTTAGTGGAATTC+TGG | 0.199883 | 4.3:-24906478 | MS.gene32017:CDS |
| GAGAGTGAAAATTCATTCTT+TGG | 0.232930 | 4.3:-24906518 | MS.gene32017:CDS |
| TCCATGTGCATCTTCAATTC+TGG | 0.263176 | 4.3:+24906380 | None:intergenic |
| ATCAAGACTCTTAGATGAAT+TGG | 0.303699 | 4.3:-24905832 | MS.gene32017:CDS |
| TGTGAATAGATGGACAAAAT+TGG | 0.310241 | 4.3:-24906063 | MS.gene32017:CDS |
| AAAGCTTATGCTTATGTTGC+TGG | 0.313071 | 4.3:-24907689 | MS.gene32017:CDS |
| TGATTGTGATGGAAATGTTT+TGG | 0.349959 | 4.3:-24906021 | MS.gene32017:CDS |
| GTCATTACATTGTGAATAGA+TGG | 0.356815 | 4.3:-24906073 | MS.gene32017:CDS |
| CCATTCCAATTCAAATTCTT+CGG | 0.364937 | 4.3:+24906676 | None:intergenic |
| GTCCTCCGAAGAATTTGAAT+TGG | 0.375671 | 4.3:-24906681 | MS.gene32017:CDS |
| GAATCCGAACTTAACTTTAG+TGG | 0.377610 | 4.3:-24906486 | MS.gene32017:CDS |
| CCACAACCTTTGGTATTTGA+AGG | 0.394670 | 4.3:+24905756 | None:intergenic |
| CTTAACTTTAGTGGAATTCT+GGG | 0.409782 | 4.3:-24906477 | MS.gene32017:CDS |
| CCTTTGGTATTTGAAGGTTC+AGG | 0.415587 | 4.3:+24905762 | None:intergenic |
| GATTACAGCTTGGAAGGAAA+TGG | 0.422247 | 4.3:-24906638 | MS.gene32017:CDS |
| TGGGACAATTGCGACTATCA+TGG | 0.441276 | 4.3:+24905646 | None:intergenic |
| AATTCCACTAAAGTTAAGTT+CGG | 0.441463 | 4.3:+24906482 | None:intergenic |
| CCGAAGAATTTGAATTGGAA+TGG | 0.459671 | 4.3:-24906676 | MS.gene32017:CDS |
| AAGATAAAGATGGTGTCAAA+TGG | 0.465128 | 4.3:-24907637 | MS.gene32017:CDS |
| GTATTTGATACTTTAGAAGA+AGG | 0.476029 | 4.3:-24907725 | MS.gene32017:CDS |
| ATCAAATACCTTGCCAATCA+CGG | 0.480690 | 4.3:+24907739 | None:intergenic |
| GATGACCTCAAACCCGTGAT+TGG | 0.481001 | 4.3:-24907752 | MS.gene32017:CDS |
| CTATTCACAATGTAATGACT+TGG | 0.483190 | 4.3:+24906077 | None:intergenic |
| AAGACTCTTAGATGAATTGG+AGG | 0.489101 | 4.3:-24905829 | MS.gene32017:CDS |
| CCTTCAAATACCAAAGGTTG+TGG | 0.497729 | 4.3:-24905756 | MS.gene32017:CDS |
| CCTTGCCAATCACGGGTTTG+AGG | 0.498767 | 4.3:+24907747 | None:intergenic |
| ATTAGTGATTACAGCTTGGA+AGG | 0.499656 | 4.3:-24906644 | MS.gene32017:CDS |
| TGGAGTGCATGTGTAGATTG+TGG | 0.503723 | 4.3:-24906293 | MS.gene32017:CDS |
| TCAAATACCTTGCCAATCAC+GGG | 0.509728 | 4.3:+24907740 | None:intergenic |
| GGTTGTGGAAAACGCATCAA+AGG | 0.514480 | 4.3:-24905741 | MS.gene32017:CDS |
| TCTTACCAAAAGCTATGAAG+TGG | 0.517098 | 4.3:+24905617 | None:intergenic |
| TGCAAAATGTTTGAGTCGGA+AGG | 0.526086 | 4.3:-24906155 | MS.gene32017:CDS |
| AATGTATCTTTAAAATAAGC+CGG | 0.531771 | 4.3:+24906575 | None:intergenic |
| TCTAAGAAGCATGTGGATAC+CGG | 0.532104 | 4.3:-24906594 | MS.gene32017:CDS |
| TTGCTCCTCATTTACGATGA+GGG | 0.536350 | 4.3:-24905900 | MS.gene32017:CDS |
| TGGAGTTGAAGGAACAAAAG+AGG | 0.536364 | 4.3:-24906273 | MS.gene32017:CDS |
| TTTGATACTTTAGAAGAAGG+AGG | 0.543151 | 4.3:-24907722 | MS.gene32017:CDS |
| ACATATTTCAAAAGGAGTTG+TGG | 0.545745 | 4.3:-24906313 | MS.gene32017:CDS |
| ACTAAAATGAAAGATAAAGA+TGG | 0.547761 | 4.3:-24907647 | MS.gene32017:CDS |
| TGTGTAGATTGTGGAGTTGA+AGG | 0.549569 | 4.3:-24906284 | MS.gene32017:CDS |
| ATTGTTGAAATGCATGCATA+TGG | 0.551167 | 4.3:-24905943 | MS.gene32017:CDS |
| TTCATGCAAAATGTTTGAGT+CGG | 0.552171 | 4.3:-24906159 | MS.gene32017:CDS |
| TTACCGTCTTTCGACGGTGA+GGG | 0.553668 | 4.3:+24907818 | None:intergenic |
| TATTATTAGTGATTACAGCT+TGG | 0.557012 | 4.3:-24906648 | MS.gene32017:CDS |
| TACAACCCTCATCGTAAATG+AGG | 0.560077 | 4.3:+24905895 | None:intergenic |
| TTTAGAGAAGCACGCTAGAG+AGG | 0.563012 | 4.3:-24906357 | MS.gene32017:CDS |
| GTTGAAGGAACAAAAGAGGA+AGG | 0.564244 | 4.3:-24906269 | MS.gene32017:CDS |
| GGATCATTACCGTCTTTCGA+CGG | 0.572187 | 4.3:+24907812 | None:intergenic |
| TTCCAATTCAAATTCTTCGG+AGG | 0.582813 | 4.3:+24906679 | None:intergenic |
| TTACCCTCACCGTCGAAAGA+CGG | 0.582992 | 4.3:-24907821 | MS.gene32017:CDS |
| GTTGTGGAAAACGCATCAAA+GGG | 0.587395 | 4.3:-24905740 | MS.gene32017:CDS |
| CATCAAAGGGAGGAAAGAGA+AGG | 0.596437 | 4.3:-24905727 | MS.gene32017:CDS |
| GGGACAATTGCGACTATCAT+GGG | 0.600073 | 4.3:+24905647 | None:intergenic |
| TTGAAATGCATGCATATGGC+TGG | 0.600621 | 4.3:-24905939 | MS.gene32017:CDS |
| TTGGTATTTGAAGGTTCAGG+TGG | 0.606194 | 4.3:+24905765 | None:intergenic |
| ATTGCTCCTCATTTACGATG+AGG | 0.607659 | 4.3:-24905901 | MS.gene32017:CDS |
| TGTTGTGAGAAAACATAGAG+AGG | 0.608991 | 4.3:-24906216 | MS.gene32017:CDS |
| CCTCAAACCCGTGATTGGCA+AGG | 0.622334 | 4.3:-24907747 | MS.gene32017:CDS |
| ACAGCTTGGAAGGAAATGGA+TGG | 0.637153 | 4.3:-24906634 | MS.gene32017:CDS |
| AGGGAGGAAAGAGAAGGCAA+TGG | 0.644446 | 4.3:-24905721 | MS.gene32017:CDS |
| TCCAGAATTGAAGATGCACA+TGG | 0.647030 | 4.3:-24906381 | MS.gene32017:CDS |
| ATTACCGTCTTTCGACGGTG+AGG | 0.651913 | 4.3:+24907817 | None:intergenic |
| CCTGAACCTTCAAATACCAA+AGG | 0.662219 | 4.3:-24905762 | MS.gene32017:CDS |
| GTGGAAAACGCATCAAAGGG+AGG | 0.682719 | 4.3:-24905737 | MS.gene32017:CDS |
| GGAATGGATTCCTACGTGTG+AGG | 0.709786 | 4.3:-24907774 | MS.gene32017:CDS |
| TGTATGATCTAAGAAGCATG+TGG | 0.717264 | 4.3:-24906601 | MS.gene32017:CDS |
| TTGAGGTCATCCTCACACGT+AGG | 0.738566 | 4.3:+24907764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAAAGATACATTTA+TGG | - | chr4.3:24906907-24906926 | MS.gene32017:intron | 10.0% |
| !! | AAAAAGTTATCAAATAATGA+AGG | - | chr4.3:24906169-24906188 | MS.gene32017:CDS | 15.0% |
| !!! | AAACTTTTACATATTTCAAA+AGG | - | chr4.3:24907156-24907175 | MS.gene32017:intron | 15.0% |
| !!! | ACATATTCTTTTTGTATTAA+AGG | - | chr4.3:24907357-24907376 | MS.gene32017:intron | 15.0% |
| !!! | ATATTCTTTTTGTATTAAAG+GGG | - | chr4.3:24907359-24907378 | MS.gene32017:intron | 15.0% |
| !!! | CATATTCTTTTTGTATTAAA+GGG | - | chr4.3:24907358-24907377 | MS.gene32017:intron | 15.0% |
| !! | ACTAAAATGAAAGATAAAGA+TGG | - | chr4.3:24905830-24905849 | MS.gene32017:CDS | 20.0% |
| !! | CTAAAAAAAACTTTCAGAAA+AGG | - | chr4.3:24906706-24906725 | MS.gene32017:intron | 20.0% |
| !!! | AATGTATCTTTAAAATAAGC+CGG | + | chr4.3:24906905-24906924 | None:intergenic | 20.0% |
| !!! | TGATAATTTTAGAAGAAAAC+AGG | - | chr4.3:24906298-24906317 | MS.gene32017:CDS | 20.0% |
| ! | AAAAAAACTTTCAGAAAAGG+TGG | - | chr4.3:24906709-24906728 | MS.gene32017:intron | 25.0% |
| ! | AAAAAACTTTCAGAAAAGGT+GGG | - | chr4.3:24906710-24906729 | MS.gene32017:intron | 25.0% |
| ! | AAAAAGAAGAATCGTTTGTT+TGG | - | chr4.3:24906549-24906568 | MS.gene32017:CDS | 25.0% |
| ! | AATTCCACTAAAGTTAAGTT+CGG | + | chr4.3:24906998-24907017 | None:intergenic | 25.0% |
| ! | ACATAATCATAGAAGAATGA+AGG | + | chr4.3:24906332-24906351 | None:intergenic | 25.0% |
| ! | ATGATAATAACAGATCAAGA+TGG | - | chr4.3:24906617-24906636 | MS.gene32017:CDS | 25.0% |
| ! | CGAAAAAATTACTCTTTGTT+TGG | - | chr4.3:24906404-24906423 | MS.gene32017:CDS | 25.0% |
| ! | GTAGAAAAAGAAAATTGACA+CGG | - | chr4.3:24905955-24905974 | MS.gene32017:CDS | 25.0% |
| ! | TAATGATCCAAAAAATACGT+CGG | - | chr4.3:24905679-24905698 | MS.gene32017:CDS | 25.0% |
| ! | TAGAAAAAGAAAATTGACAC+GGG | - | chr4.3:24905956-24905975 | MS.gene32017:CDS | 25.0% |
| ! | TATTATTAGTGATTACAGCT+TGG | - | chr4.3:24906829-24906848 | MS.gene32017:intron | 25.0% |
| ! | TCATAAAATACTTGTTTGTG+CGG | + | chr4.3:24906457-24906476 | None:intergenic | 25.0% |
| ! | TGATAATAACAGATCAAGAT+GGG | - | chr4.3:24906618-24906637 | MS.gene32017:CDS | 25.0% |
| ! | TGATCTGTTATTATCATAAC+AGG | + | chr4.3:24906614-24906633 | None:intergenic | 25.0% |
| ! | TTTCCATCACAATCAAAAAT+TGG | + | chr4.3:24907451-24907470 | None:intergenic | 25.0% |
| !! | ATATTTTCTTTGCTCAAAAG+AGG | - | chr4.3:24905865-24905884 | MS.gene32017:CDS | 25.0% |
| !! | GTATTTGATACTTTAGAAGA+AGG | - | chr4.3:24905752-24905771 | MS.gene32017:CDS | 25.0% |
| !! | TATTTTCTTTGCTCAAAAGA+GGG | - | chr4.3:24905866-24905885 | MS.gene32017:CDS | 25.0% |
| !!! | AAACCAATTTTTGATTGTGA+TGG | - | chr4.3:24907445-24907464 | MS.gene32017:intron | 25.0% |
| !!! | GGTTTTAAAGAGGAAAAAAA+AGG | - | chr4.3:24905887-24905906 | MS.gene32017:CDS | 25.0% |
| !!! | TTCAATTGTTTTAGCTACAT+TGG | + | chr4.3:24907686-24907705 | None:intergenic | 25.0% |
| AACAACAAAAAAAGAGAACG+AGG | - | chr4.3:24907779-24907798 | MS.gene32017:CDS | 30.0% | |
| ACAAAAAGAATATGTCGACA+TGG | + | chr4.3:24907352-24907371 | None:intergenic | 30.0% | |
| ACATATTTCAAAAGGAGTTG+TGG | - | chr4.3:24907164-24907183 | MS.gene32017:intron | 30.0% | |
| ACTTAACTTTAGTGGAATTC+TGG | - | chr4.3:24906999-24907018 | MS.gene32017:intron | 30.0% | |
| ATAATAACAGATCAAGATGG+GGG | - | chr4.3:24906620-24906639 | MS.gene32017:CDS | 30.0% | |
| ATCAAGACTCTTAGATGAAT+TGG | - | chr4.3:24907645-24907664 | MS.gene32017:CDS | 30.0% | |
| ATCGTCAAAGTATAACCTTT+GGG | - | chr4.3:24906507-24906526 | MS.gene32017:CDS | 30.0% | |
| ATTATGTAGCTGACAATGAA+GGG | - | chr4.3:24906345-24906364 | MS.gene32017:CDS | 30.0% | |
| ATTGTTGAAATGCATGCATA+TGG | - | chr4.3:24907534-24907553 | MS.gene32017:intron | 30.0% | |
| CAAAAAGAATATGTCGACAT+GGG | + | chr4.3:24907351-24907370 | None:intergenic | 30.0% | |
| CCATTCCAATTCAAATTCTT+CGG | + | chr4.3:24906804-24906823 | None:intergenic | 30.0% | |
| CTATTCACAATGTAATGACT+TGG | + | chr4.3:24907403-24907422 | None:intergenic | 30.0% | |
| CTTAACTTTAGTGGAATTCT+GGG | - | chr4.3:24907000-24907019 | MS.gene32017:intron | 30.0% | |
| GAGAGTGAAAATTCATTCTT+TGG | - | chr4.3:24906959-24906978 | MS.gene32017:intron | 30.0% | |
| GATAATAACAGATCAAGATG+GGG | - | chr4.3:24906619-24906638 | MS.gene32017:CDS | 30.0% | |
| GTCATTACATTGTGAATAGA+TGG | - | chr4.3:24907404-24907423 | MS.gene32017:intron | 30.0% | |
| GTCGGAAGTTATGAAAATAT+AGG | - | chr4.3:24906197-24906216 | MS.gene32017:CDS | 30.0% | |
| TGTGAATAGATGGACAAAAT+TGG | - | chr4.3:24907414-24907433 | MS.gene32017:intron | 30.0% | |
| TTACATTTCTTGCTGATCTA+AGG | + | chr4.3:24906094-24906113 | None:intergenic | 30.0% | |
| TTATCAAATAATGAAGGAGC+AGG | - | chr4.3:24906175-24906194 | MS.gene32017:CDS | 30.0% | |
| TTCATGCAAAATGTTTGAGT+CGG | - | chr4.3:24907318-24907337 | MS.gene32017:intron | 30.0% | |
| TTTATGAAGGTCAATCACAT+GGG | - | chr4.3:24906042-24906061 | MS.gene32017:CDS | 30.0% | |
| ! | AAGATAAAGATGGTGTCAAA+TGG | - | chr4.3:24905840-24905859 | MS.gene32017:CDS | 30.0% |
| ! | CTTTTTGTATTAAAGGGGAA+AGG | - | chr4.3:24907364-24907383 | MS.gene32017:intron | 30.0% |
| ! | GAAGTCTCAAACTTTTATGA+AGG | - | chr4.3:24906029-24906048 | MS.gene32017:CDS | 30.0% |
| ! | GAAGTTGAAACATGTGTTTT+GGG | - | chr4.3:24906367-24906386 | MS.gene32017:CDS | 30.0% |
| ! | GCACATTAGTTTCAAAAACA+TGG | - | chr4.3:24907506-24907525 | MS.gene32017:intron | 30.0% |
| ! | TTTGATACTTTAGAAGAAGG+AGG | - | chr4.3:24905755-24905774 | MS.gene32017:CDS | 30.0% |
| ! | TTTTATGAAGGTCAATCACA+TGG | - | chr4.3:24906041-24906060 | MS.gene32017:CDS | 30.0% |
| ! | TTTTCAGCAATAAGCAATTG+TGG | + | chr4.3:24905921-24905940 | None:intergenic | 30.0% |
| !! | AGACATTTTTGAAAGCAATG+GGG | - | chr4.3:24906579-24906598 | MS.gene32017:CDS | 30.0% |
| !! | GAGACATTTTTGAAAGCAAT+GGG | - | chr4.3:24906578-24906597 | MS.gene32017:CDS | 30.0% |
| !! | TGAGACATTTTTGAAAGCAA+TGG | - | chr4.3:24906577-24906596 | MS.gene32017:CDS | 30.0% |
| !! | TGATTGTGATGGAAATGTTT+TGG | - | chr4.3:24907456-24907475 | MS.gene32017:intron | 30.0% |
| !!! | GTTTTGAAGAGAACTATTGA+TGG | - | chr4.3:24905999-24906018 | MS.gene32017:CDS | 30.0% |
| AAAAAGAAAATTGACACGGG+AGG | - | chr4.3:24905959-24905978 | MS.gene32017:CDS | 35.0% | |
| AAAACCACTATTCTCATCCA+TGG | + | chr4.3:24906741-24906760 | None:intergenic | 35.0% | |
| AAAAGAAAATTGACACGGGA+GGG | - | chr4.3:24905960-24905979 | MS.gene32017:CDS | 35.0% | |
| AAAGCTTATGCTTATGTTGC+TGG | - | chr4.3:24905788-24905807 | MS.gene32017:CDS | 35.0% | |
| AAGACTCTTAGATGAATTGG+AGG | - | chr4.3:24907648-24907667 | MS.gene32017:CDS | 35.0% | |
| ATCAAATACCTTGCCAATCA+CGG | + | chr4.3:24905741-24905760 | None:intergenic | 35.0% | |
| ATTAGTGATTACAGCTTGGA+AGG | - | chr4.3:24906833-24906852 | MS.gene32017:intron | 35.0% | |
| CATCGTCAAAGTATAACCTT+TGG | - | chr4.3:24906506-24906525 | MS.gene32017:CDS | 35.0% | |
| CCGAAGAATTTGAATTGGAA+TGG | - | chr4.3:24906801-24906820 | MS.gene32017:intron | 35.0% | |
| CTAAGGAATTGTCTCTTTGA+AGG | + | chr4.3:24906077-24906096 | None:intergenic | 35.0% | |
| GAATCCGAACTTAACTTTAG+TGG | - | chr4.3:24906991-24907010 | MS.gene32017:intron | 35.0% | |
| GATTATGTAGCTGACAATGA+AGG | - | chr4.3:24906344-24906363 | MS.gene32017:CDS | 35.0% | |
| TATGAAGAATGCAATAGGAG+CGG | - | chr4.3:24906643-24906662 | MS.gene32017:CDS | 35.0% | |
| TCGTCAAAGTATAACCTTTG+GGG | - | chr4.3:24906508-24906527 | MS.gene32017:CDS | 35.0% | |
| TGATGATTTATGCCAGTGAA+TGG | + | chr4.3:24906488-24906507 | None:intergenic | 35.0% | |
| TGTTGTGAGAAAACATAGAG+AGG | - | chr4.3:24907261-24907280 | MS.gene32017:intron | 35.0% | |
| TTCCAATTCAAATTCTTCGG+AGG | + | chr4.3:24906801-24906820 | None:intergenic | 35.0% | |
| ! | ATGATTTTTGCACCATTCAC+TGG | - | chr4.3:24906473-24906492 | MS.gene32017:CDS | 35.0% |
| ! | ATTTTCACTCTCTGATCTTG+AGG | + | chr4.3:24906951-24906970 | None:intergenic | 35.0% |
| ! | GATGAATTGGAGGCTTTTAT+TGG | - | chr4.3:24907658-24907677 | MS.gene32017:CDS | 35.0% |
| ! | GGAAGTTGAAACATGTGTTT+TGG | - | chr4.3:24906366-24906385 | MS.gene32017:CDS | 35.0% |
| ! | TGTATGATCTAAGAAGCATG+TGG | - | chr4.3:24906876-24906895 | MS.gene32017:intron | 35.0% |
| ! | TTACTCTTTGTTTGGAGATG+TGG | - | chr4.3:24906412-24906431 | MS.gene32017:CDS | 35.0% |
| !! | ACATTTTTGAAAGCAATGGG+GGG | - | chr4.3:24906581-24906600 | MS.gene32017:CDS | 35.0% |
| !! | GACATTTTTGAAAGCAATGG+GGG | - | chr4.3:24906580-24906599 | MS.gene32017:CDS | 35.0% |
| !! | TTGTGATGGAAATGTTTTGG+AGG | - | chr4.3:24907459-24907478 | MS.gene32017:intron | 35.0% |
| !!! | CAATAGGAGCGGTTTTAAAA+GGG | - | chr4.3:24906654-24906673 | MS.gene32017:CDS | 35.0% |
| !!! | CTCAAAAGAGGGTTTTAAAG+AGG | - | chr4.3:24905877-24905896 | MS.gene32017:CDS | 35.0% |
| AGTTCCATGGATGAGAATAG+TGG | - | chr4.3:24906734-24906753 | MS.gene32017:intron | 40.0% | |
| ATTGCTCCTCATTTACGATG+AGG | - | chr4.3:24907576-24907595 | MS.gene32017:intron | 40.0% | |
| CAAAAAATACGTCGGTGGAA+TGG | - | chr4.3:24905687-24905706 | MS.gene32017:CDS | 40.0% | |
| CAAATAATGAAGGAGCAGGT+CGG | - | chr4.3:24906179-24906198 | MS.gene32017:CDS | 40.0% | |
| CCACAACCTTTGGTATTTGA+AGG | + | chr4.3:24907724-24907743 | None:intergenic | 40.0% | |
| CCTGAACCTTCAAATACCAA+AGG | - | chr4.3:24907715-24907734 | MS.gene32017:CDS | 40.0% | |
| CCTTCAAATACCAAAGGTTG+TGG | - | chr4.3:24907721-24907740 | MS.gene32017:CDS | 40.0% | |
| CCTTTGGTATTTGAAGGTTC+AGG | + | chr4.3:24907718-24907737 | None:intergenic | 40.0% | |
| GATTACAGCTTGGAAGGAAA+TGG | - | chr4.3:24906839-24906858 | MS.gene32017:intron | 40.0% | |
| GTCCTCCGAAGAATTTGAAT+TGG | - | chr4.3:24906796-24906815 | MS.gene32017:intron | 40.0% | |
| GTTGAAGGAACAAAAGAGGA+AGG | - | chr4.3:24907208-24907227 | MS.gene32017:intron | 40.0% | |
| GTTGTGGAAAACGCATCAAA+GGG | - | chr4.3:24907737-24907756 | MS.gene32017:CDS | 40.0% | |
| TACAACCCTCATCGTAAATG+AGG | + | chr4.3:24907585-24907604 | None:intergenic | 40.0% | |
| TCAAATACCTTGCCAATCAC+GGG | + | chr4.3:24905740-24905759 | None:intergenic | 40.0% | |
| TCCAGAATTGAAGATGCACA+TGG | - | chr4.3:24907096-24907115 | MS.gene32017:intron | 40.0% | |
| TCCATGTGCATCTTCAATTC+TGG | + | chr4.3:24907100-24907119 | None:intergenic | 40.0% | |
| TCCTGCAATAGAGCTAATGT+GGG | - | chr4.3:24906140-24906159 | MS.gene32017:CDS | 40.0% | |
| TGATCCAAAAAATACGTCGG+TGG | - | chr4.3:24905682-24905701 | MS.gene32017:CDS | 40.0% | |
| TGCAAAATGTTTGAGTCGGA+AGG | - | chr4.3:24907322-24907341 | MS.gene32017:intron | 40.0% | |
| TGGAGTTGAAGGAACAAAAG+AGG | - | chr4.3:24907204-24907223 | MS.gene32017:intron | 40.0% | |
| TGTGTAGATTGTGGAGTTGA+AGG | - | chr4.3:24907193-24907212 | MS.gene32017:intron | 40.0% | |
| TTCCTGCAATAGAGCTAATG+TGG | - | chr4.3:24906139-24906158 | MS.gene32017:CDS | 40.0% | |
| TTGAAATGCATGCATATGGC+TGG | - | chr4.3:24907538-24907557 | MS.gene32017:intron | 40.0% | |
| TTGCTCCTCATTTACGATGA+GGG | - | chr4.3:24907577-24907596 | MS.gene32017:intron | 40.0% | |
| TTGGTATTTGAAGGTTCAGG+TGG | + | chr4.3:24907715-24907734 | None:intergenic | 40.0% | |
| ! | ATCGTTTCAAGTCATGTGTC+TGG | - | chr4.3:24906765-24906784 | MS.gene32017:intron | 40.0% |
| ! | CGTCTCATAGATTTTGCATG+TGG | - | chr4.3:24906677-24906696 | MS.gene32017:CDS | 40.0% |
| ! | TCTAAGAAGCATGTGGATAC+CGG | - | chr4.3:24906883-24906902 | MS.gene32017:intron | 40.0% |
| !! | AAACATGTGTTTTGGGCTGT+TGG | - | chr4.3:24906374-24906393 | MS.gene32017:CDS | 40.0% |
| !!! | CATTCCACCGACGTATTTTT+TGG | + | chr4.3:24905689-24905708 | None:intergenic | 40.0% |
| !!! | GCAATAGGAGCGGTTTTAAA+AGG | - | chr4.3:24906653-24906672 | MS.gene32017:CDS | 40.0% |
| ACAGCTTGGAAGGAAATGGA+TGG | - | chr4.3:24906843-24906862 | MS.gene32017:intron | 45.0% | |
| AGAAAAGGTGGGTAGTTCCA+TGG | - | chr4.3:24906721-24906740 | MS.gene32017:intron | 45.0% | |
| CATCAAAGGGAGGAAAGAGA+AGG | - | chr4.3:24907750-24907769 | MS.gene32017:CDS | 45.0% | |
| CCTGCAATAGAGCTAATGTG+GGG | - | chr4.3:24906141-24906160 | MS.gene32017:CDS | 45.0% | |
| GGATCATTACCGTCTTTCGA+CGG | + | chr4.3:24905668-24905687 | None:intergenic | 45.0% | |
| GGGACAATTGCGACTATCAT+GGG | + | chr4.3:24907833-24907852 | None:intergenic | 45.0% | |
| GGTTGTGGAAAACGCATCAA+AGG | - | chr4.3:24907736-24907755 | MS.gene32017:CDS | 45.0% | |
| TGGAGTGCATGTGTAGATTG+TGG | - | chr4.3:24907184-24907203 | MS.gene32017:intron | 45.0% | |
| TGGGACAATTGCGACTATCA+TGG | + | chr4.3:24907834-24907853 | None:intergenic | 45.0% | |
| TTTCAAAAGAGCAGCCCCAA+AGG | + | chr4.3:24906525-24906544 | None:intergenic | 45.0% | |
| ! | GATGCGTTTTCCACAACCTT+TGG | + | chr4.3:24907734-24907753 | None:intergenic | 45.0% |
| ! | GGGGGTATGAAGAATGCAAT+AGG | - | chr4.3:24906638-24906657 | MS.gene32017:CDS | 45.0% |
| ! | TTTAGAGAAGCACGCTAGAG+AGG | - | chr4.3:24907120-24907139 | MS.gene32017:intron | 45.0% |
| AGGGAGGAAAGAGAAGGCAA+TGG | - | chr4.3:24907756-24907775 | MS.gene32017:CDS | 50.0% | |
| ATTACCGTCTTTCGACGGTG+AGG | + | chr4.3:24905663-24905682 | None:intergenic | 50.0% | |
| GATGACCTCAAACCCGTGAT+TGG | - | chr4.3:24905725-24905744 | MS.gene32017:CDS | 50.0% | |
| GTGGAAAACGCATCAAAGGG+AGG | - | chr4.3:24907740-24907759 | MS.gene32017:CDS | 50.0% | |
| TTACCCTCACCGTCGAAAGA+CGG | - | chr4.3:24905656-24905675 | MS.gene32017:CDS | 50.0% | |
| TTACCGTCTTTCGACGGTGA+GGG | + | chr4.3:24905662-24905681 | None:intergenic | 50.0% | |
| TTGAGGTCATCCTCACACGT+AGG | + | chr4.3:24905716-24905735 | None:intergenic | 50.0% | |
| ! | GGAATGGATTCCTACGTGTG+AGG | - | chr4.3:24905703-24905722 | MS.gene32017:CDS | 50.0% |
| !! | CCCCACATTAGCTCTATTGC+AGG | + | chr4.3:24906144-24906163 | None:intergenic | 50.0% |
| CCTCAAACCCGTGATTGGCA+AGG | - | chr4.3:24905730-24905749 | MS.gene32017:CDS | 55.0% | |
| CCTTGCCAATCACGGGTTTG+AGG | + | chr4.3:24905733-24905752 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24905629 | 24907870 | 24905629 | ID=MS.gene32017 |
| chr4.3 | mRNA | 24905629 | 24907870 | 24905629 | ID=MS.gene32017.t1;Parent=MS.gene32017 |
| chr4.3 | exon | 24907591 | 24907870 | 24907591 | ID=MS.gene32017.t1.exon1;Parent=MS.gene32017.t1 |
| chr4.3 | CDS | 24907591 | 24907870 | 24907591 | ID=cds.MS.gene32017.t1;Parent=MS.gene32017.t1 |
| chr4.3 | exon | 24905629 | 24906704 | 24905629 | ID=MS.gene32017.t1.exon2;Parent=MS.gene32017.t1 |
| chr4.3 | CDS | 24905629 | 24906704 | 24905629 | ID=cds.MS.gene32017.t1;Parent=MS.gene32017.t1 |
| Gene Sequence |
| Protein sequence |
