Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32055.t1 | XP_024642244.1 | 95.7 | 648 | 26 | 1 | 1 | 646 | 14 | 661 | 0.00E+00 | 1099.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32055.t1 | E3SXU4 | 85.9 | 652 | 68 | 10 | 1 | 645 | 16 | 650 | 1.2e-277 | 956.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32055.t1 | A0A0R7EXN0 | 95.7 | 648 | 26 | 1 | 1 | 646 | 14 | 661 | 0.0e+00 | 1099.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene32055.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32055.t1 | MTR_1g072320 | 93.673 | 648 | 34 | 2 | 1 | 646 | 14 | 656 | 0.0 | 1187 |
MS.gene32055.t1 | MTR_8g098275 | 53.226 | 186 | 81 | 2 | 2 | 186 | 10 | 190 | 6.60e-60 | 211 |
MS.gene32055.t1 | MTR_8g098275 | 32.155 | 283 | 151 | 8 | 344 | 605 | 302 | 564 | 3.11e-26 | 114 |
MS.gene32055.t1 | MTR_8g098275 | 32.155 | 283 | 151 | 8 | 344 | 605 | 145 | 407 | 1.30e-26 | 113 |
MS.gene32055.t1 | MTR_8g098275 | 31.802 | 283 | 152 | 7 | 344 | 605 | 209 | 471 | 2.35e-26 | 113 |
MS.gene32055.t1 | MTR_8g098275 | 53.333 | 75 | 35 | 0 | 112 | 186 | 23 | 97 | 1.19e-17 | 87.0 |
MS.gene32055.t1 | MTR_5g030420 | 35.912 | 181 | 104 | 5 | 2 | 177 | 32 | 205 | 3.07e-25 | 105 |
MS.gene32055.t1 | MTR_5g030420 | 35.450 | 189 | 109 | 6 | 2 | 185 | 32 | 212 | 6.07e-25 | 105 |
MS.gene32055.t1 | MTR_5g030430 | 36.066 | 183 | 101 | 6 | 2 | 177 | 49 | 222 | 6.17e-25 | 110 |
MS.gene32055.t1 | MTR_5g030430 | 30.435 | 184 | 122 | 3 | 442 | 619 | 472 | 655 | 7.02e-17 | 85.1 |
MS.gene32055.t1 | MTR_8g067280 | 32.275 | 189 | 106 | 6 | 2 | 180 | 58 | 234 | 1.01e-20 | 97.1 |
MS.gene32055.t1 | MTR_8g067280 | 32.692 | 156 | 102 | 1 | 460 | 612 | 462 | 617 | 5.48e-18 | 88.6 |
MS.gene32055.t1 | MTR_3g498695 | 35.204 | 196 | 114 | 5 | 446 | 638 | 289 | 474 | 2.27e-20 | 95.1 |
MS.gene32055.t1 | MTR_3g498695 | 35.359 | 181 | 108 | 4 | 446 | 623 | 289 | 463 | 5.77e-19 | 90.9 |
MS.gene32055.t1 | MTR_2g010450 | 34.395 | 157 | 93 | 3 | 460 | 615 | 177 | 324 | 1.18e-18 | 88.6 |
MS.gene32055.t1 | MTR_8g024770 | 33.880 | 183 | 93 | 5 | 447 | 619 | 271 | 435 | 1.45e-18 | 89.4 |
MS.gene32055.t1 | MTR_8g024770 | 24.444 | 180 | 83 | 3 | 8 | 180 | 35 | 168 | 1.59e-14 | 76.6 |
MS.gene32055.t1 | MTR_8g024790 | 32.948 | 173 | 104 | 3 | 447 | 619 | 283 | 443 | 7.70e-18 | 87.0 |
MS.gene32055.t1 | MTR_8g024790 | 26.519 | 181 | 90 | 5 | 7 | 180 | 37 | 181 | 9.51e-17 | 84.0 |
MS.gene32055.t1 | MTR_8g027495 | 27.919 | 197 | 125 | 6 | 6 | 193 | 66 | 254 | 8.08e-18 | 87.8 |
MS.gene32055.t1 | MTR_8g027495 | 55.000 | 60 | 27 | 0 | 460 | 519 | 458 | 517 | 2.31e-14 | 77.0 |
MS.gene32055.t1 | MTR_4g067010 | 31.313 | 198 | 104 | 6 | 460 | 646 | 147 | 323 | 9.95e-18 | 85.1 |
MS.gene32055.t1 | MTR_5g014520 | 32.468 | 154 | 95 | 2 | 448 | 600 | 144 | 289 | 1.49e-17 | 84.7 |
MS.gene32055.t1 | MTR_0011s0260 | 34.028 | 144 | 83 | 3 | 460 | 601 | 183 | 316 | 1.71e-17 | 85.1 |
MS.gene32055.t1 | MTR_0246s0020 | 32.886 | 149 | 91 | 3 | 460 | 606 | 198 | 339 | 2.56e-17 | 84.7 |
MS.gene32055.t1 | MTR_0011s0210 | 31.183 | 186 | 107 | 6 | 460 | 640 | 183 | 352 | 3.40e-17 | 84.0 |
MS.gene32055.t1 | MTR_0246s0020 | 32.886 | 149 | 91 | 3 | 460 | 606 | 198 | 339 | 3.46e-17 | 84.3 |
MS.gene32055.t1 | MTR_4g066460 | 27.237 | 257 | 158 | 8 | 355 | 601 | 48 | 285 | 6.67e-17 | 82.8 |
MS.gene32055.t1 | MTR_0250s0040 | 29.448 | 163 | 99 | 4 | 441 | 601 | 73 | 221 | 7.93e-17 | 81.3 |
MS.gene32055.t1 | MTR_7g117670 | 25.571 | 219 | 134 | 5 | 1 | 200 | 57 | 265 | 1.40e-16 | 84.0 |
MS.gene32055.t1 | MTR_7g117670 | 50.704 | 71 | 34 | 1 | 460 | 530 | 402 | 471 | 1.10e-13 | 74.7 |
MS.gene32055.t1 | MTR_5g014640 | 34.532 | 139 | 80 | 2 | 461 | 599 | 155 | 282 | 1.67e-16 | 81.6 |
MS.gene32055.t1 | MTR_7g083900 | 32.000 | 175 | 107 | 4 | 457 | 623 | 283 | 453 | 3.41e-16 | 82.0 |
MS.gene32055.t1 | MTR_7g083900 | 32.353 | 170 | 103 | 4 | 457 | 618 | 283 | 448 | 3.65e-16 | 82.0 |
MS.gene32055.t1 | MTR_4g092700 | 29.310 | 174 | 113 | 3 | 426 | 599 | 126 | 289 | 6.86e-16 | 79.7 |
MS.gene32055.t1 | MTR_4g009540 | 28.025 | 157 | 102 | 3 | 448 | 601 | 143 | 291 | 1.14e-15 | 79.0 |
MS.gene32055.t1 | MTR_5g014560 | 28.409 | 176 | 109 | 4 | 448 | 615 | 117 | 283 | 1.37e-15 | 78.6 |
MS.gene32055.t1 | MTR_6g047570 | 27.136 | 199 | 113 | 5 | 419 | 601 | 110 | 292 | 2.25e-15 | 78.2 |
MS.gene32055.t1 | MTR_4g009540 | 25.758 | 198 | 133 | 5 | 448 | 642 | 143 | 329 | 2.76e-15 | 77.8 |
MS.gene32055.t1 | MTR_5g014600 | 29.139 | 151 | 90 | 2 | 460 | 599 | 149 | 293 | 4.84e-15 | 77.4 |
MS.gene32055.t1 | MTR_1g112680 | 28.061 | 196 | 110 | 5 | 449 | 621 | 311 | 498 | 1.11e-14 | 77.4 |
MS.gene32055.t1 | MTR_4g009110 | 27.389 | 157 | 100 | 3 | 448 | 601 | 165 | 310 | 3.40e-14 | 74.7 |
MS.gene32055.t1 | MTR_7g096350 | 42.268 | 97 | 53 | 2 | 428 | 524 | 326 | 419 | 3.75e-14 | 75.9 |
MS.gene32055.t1 | MTR_3g030700 | 30.935 | 139 | 91 | 3 | 462 | 599 | 198 | 332 | 5.20e-14 | 74.7 |
MS.gene32055.t1 | MTR_6g047550 | 30.714 | 140 | 85 | 2 | 417 | 544 | 122 | 261 | 1.41e-13 | 72.0 |
MS.gene32055.t1 | MTR_2g104550 | 27.545 | 167 | 103 | 4 | 442 | 601 | 117 | 272 | 1.53e-13 | 72.4 |
MS.gene32055.t1 | MTR_4g097920 | 61.111 | 54 | 21 | 0 | 460 | 513 | 140 | 193 | 1.54e-13 | 72.4 |
MS.gene32055.t1 | MTR_4g097920 | 61.111 | 54 | 21 | 0 | 460 | 513 | 155 | 208 | 1.75e-13 | 72.4 |
MS.gene32055.t1 | MTR_0246s0050 | 27.174 | 184 | 106 | 5 | 460 | 638 | 151 | 311 | 1.80e-13 | 72.4 |
MS.gene32055.t1 | MTR_4g098035 | 27.174 | 184 | 106 | 5 | 460 | 638 | 172 | 332 | 1.95e-13 | 72.4 |
MS.gene32055.t1 | MTR_4g097950 | 47.541 | 61 | 32 | 0 | 460 | 520 | 70 | 130 | 2.56e-13 | 70.9 |
MS.gene32055.t1 | MTR_4g097940 | 55.556 | 54 | 24 | 0 | 460 | 513 | 155 | 208 | 9.73e-13 | 70.1 |
MS.gene32055.t1 | MTR_4g066380 | 31.944 | 144 | 82 | 3 | 460 | 601 | 153 | 282 | 1.11e-12 | 70.1 |
MS.gene32055.t1 | MTR_2g081040 | 30.000 | 170 | 105 | 5 | 462 | 621 | 179 | 344 | 1.24e-12 | 70.1 |
MS.gene32055.t1 | MTR_3g104100 | 28.743 | 167 | 111 | 4 | 462 | 621 | 197 | 362 | 1.24e-12 | 70.5 |
MS.gene32055.t1 | MTR_2g104490 | 24.510 | 204 | 138 | 5 | 442 | 642 | 116 | 306 | 2.07e-12 | 68.9 |
MS.gene32055.t1 | MTR_5g030770 | 31.500 | 200 | 109 | 5 | 441 | 638 | 141 | 314 | 6.58e-12 | 67.8 |
MS.gene32055.t1 | MTR_0194s0050 | 28.387 | 155 | 96 | 4 | 461 | 600 | 186 | 340 | 8.70e-12 | 67.8 |
MS.gene32055.t1 | MTR_2g104560 | 29.577 | 142 | 84 | 4 | 461 | 599 | 55 | 183 | 1.15e-11 | 65.5 |
MS.gene32055.t1 | MTR_4g094762 | 30.435 | 161 | 92 | 5 | 449 | 599 | 283 | 433 | 1.15e-11 | 67.8 |
MS.gene32055.t1 | MTR_3g111290 | 32.544 | 169 | 84 | 6 | 434 | 599 | 149 | 290 | 1.29e-11 | 67.0 |
MS.gene32055.t1 | MTR_5g064950 | 25.641 | 195 | 123 | 8 | 461 | 641 | 102 | 288 | 1.39e-11 | 66.2 |
MS.gene32055.t1 | MTR_2g104490 | 26.087 | 161 | 106 | 3 | 442 | 599 | 116 | 266 | 3.05e-11 | 65.1 |
MS.gene32055.t1 | MTR_5g030770 | 31.000 | 200 | 104 | 5 | 441 | 638 | 141 | 308 | 3.33e-11 | 65.5 |
MS.gene32055.t1 | MTR_8g009020 | 26.543 | 162 | 95 | 4 | 447 | 599 | 135 | 281 | 3.75e-11 | 65.5 |
MS.gene32055.t1 | MTR_1g019240 | 51.786 | 56 | 27 | 0 | 461 | 516 | 96 | 151 | 3.81e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32055.t1 | AT4G09820 | 73.604 | 197 | 51 | 1 | 1 | 197 | 23 | 218 | 2.04e-103 | 324 |
MS.gene32055.t1 | AT4G09820 | 39.355 | 310 | 118 | 8 | 341 | 645 | 271 | 515 | 2.04e-53 | 191 |
MS.gene32055.t1 | AT5G41315 | 32.893 | 681 | 351 | 20 | 2 | 641 | 18 | 633 | 1.32e-94 | 305 |
MS.gene32055.t1 | AT5G41315 | 32.893 | 681 | 351 | 20 | 2 | 641 | 26 | 641 | 1.59e-94 | 305 |
MS.gene32055.t1 | AT5G41315 | 32.893 | 681 | 351 | 20 | 2 | 641 | 23 | 638 | 2.09e-94 | 304 |
MS.gene32055.t1 | AT1G63650 | 32.713 | 645 | 322 | 20 | 2 | 620 | 17 | 575 | 3.12e-93 | 300 |
MS.gene32055.t1 | AT1G63650 | 32.713 | 645 | 322 | 20 | 2 | 620 | 17 | 575 | 3.12e-93 | 300 |
MS.gene32055.t1 | AT1G63650 | 32.713 | 645 | 322 | 20 | 2 | 620 | 17 | 575 | 3.12e-93 | 300 |
MS.gene32055.t1 | AT4G00480 | 40.816 | 196 | 98 | 4 | 2 | 182 | 27 | 219 | 9.87e-41 | 155 |
MS.gene32055.t1 | AT4G00480 | 28.082 | 292 | 167 | 11 | 342 | 619 | 241 | 503 | 3.18e-17 | 85.5 |
MS.gene32055.t1 | AT4G00480 | 40.816 | 196 | 98 | 4 | 2 | 182 | 27 | 219 | 1.58e-40 | 155 |
MS.gene32055.t1 | AT4G00480 | 27.302 | 315 | 182 | 12 | 342 | 642 | 241 | 522 | 9.60e-18 | 87.4 |
MS.gene32055.t1 | AT4G00480 | 40.816 | 196 | 98 | 4 | 2 | 182 | 27 | 219 | 7.36e-40 | 154 |
MS.gene32055.t1 | AT4G00480 | 27.302 | 315 | 182 | 12 | 342 | 642 | 241 | 522 | 1.81e-17 | 86.7 |
MS.gene32055.t1 | AT1G32640 | 31.746 | 189 | 111 | 5 | 2 | 180 | 72 | 252 | 1.96e-24 | 108 |
MS.gene32055.t1 | AT1G32640 | 33.333 | 162 | 97 | 3 | 460 | 619 | 452 | 604 | 1.40e-17 | 87.0 |
MS.gene32055.t1 | AT4G17880 | 30.366 | 191 | 114 | 4 | 2 | 180 | 67 | 250 | 2.52e-24 | 108 |
MS.gene32055.t1 | AT4G17880 | 34.254 | 181 | 108 | 4 | 442 | 619 | 395 | 567 | 2.44e-19 | 92.4 |
MS.gene32055.t1 | AT1G01260 | 35.263 | 190 | 108 | 6 | 11 | 193 | 66 | 247 | 4.94e-23 | 104 |
MS.gene32055.t1 | AT1G01260 | 44.578 | 83 | 45 | 1 | 438 | 519 | 410 | 492 | 8.09e-14 | 75.1 |
MS.gene32055.t1 | AT1G01260 | 35.263 | 190 | 108 | 6 | 11 | 193 | 66 | 247 | 4.94e-23 | 104 |
MS.gene32055.t1 | AT1G01260 | 44.578 | 83 | 45 | 1 | 438 | 519 | 410 | 492 | 8.09e-14 | 75.1 |
MS.gene32055.t1 | AT1G01260 | 35.263 | 190 | 108 | 6 | 11 | 193 | 66 | 247 | 4.94e-23 | 104 |
MS.gene32055.t1 | AT1G01260 | 44.578 | 83 | 45 | 1 | 438 | 519 | 410 | 492 | 8.09e-14 | 75.1 |
MS.gene32055.t1 | AT1G12860 | 37.195 | 164 | 99 | 2 | 457 | 619 | 264 | 424 | 3.12e-22 | 100 |
MS.gene32055.t1 | AT5G46760 | 31.053 | 190 | 102 | 5 | 2 | 176 | 56 | 231 | 9.43e-22 | 100 |
MS.gene32055.t1 | AT5G46760 | 33.750 | 160 | 102 | 2 | 460 | 619 | 415 | 570 | 2.21e-18 | 89.7 |
MS.gene32055.t1 | AT1G12860 | 36.810 | 163 | 99 | 2 | 457 | 618 | 264 | 423 | 2.04e-21 | 98.2 |
MS.gene32055.t1 | AT2G46510 | 30.366 | 191 | 117 | 4 | 7 | 187 | 62 | 246 | 2.00e-20 | 95.9 |
MS.gene32055.t1 | AT2G46510 | 62.963 | 54 | 20 | 0 | 460 | 513 | 395 | 448 | 1.20e-14 | 77.8 |
MS.gene32055.t1 | AT5G46830 | 28.571 | 182 | 113 | 4 | 11 | 180 | 49 | 225 | 4.82e-19 | 91.3 |
MS.gene32055.t1 | AT5G46830 | 33.742 | 163 | 92 | 6 | 460 | 619 | 343 | 492 | 1.96e-12 | 70.5 |
MS.gene32055.t1 | AT3G26744 | 36.145 | 166 | 102 | 3 | 457 | 619 | 304 | 468 | 1.09e-18 | 90.1 |
MS.gene32055.t1 | AT3G26744 | 35.294 | 170 | 106 | 3 | 457 | 623 | 304 | 472 | 3.03e-18 | 88.6 |
MS.gene32055.t1 | AT3G26744 | 35.294 | 170 | 106 | 3 | 457 | 623 | 304 | 472 | 3.03e-18 | 88.6 |
MS.gene32055.t1 | AT3G26744 | 35.294 | 170 | 106 | 3 | 457 | 623 | 304 | 472 | 3.03e-18 | 88.6 |
MS.gene32055.t1 | AT4G37850 | 33.133 | 166 | 91 | 5 | 448 | 609 | 145 | 294 | 6.72e-17 | 82.8 |
MS.gene32055.t1 | AT4G37850 | 33.133 | 166 | 91 | 5 | 448 | 609 | 145 | 294 | 6.72e-17 | 82.8 |
MS.gene32055.t1 | AT2G22760 | 33.533 | 167 | 89 | 5 | 446 | 598 | 96 | 254 | 1.03e-14 | 75.5 |
MS.gene32055.t1 | AT2G22760 | 33.533 | 167 | 89 | 5 | 446 | 598 | 96 | 254 | 2.38e-14 | 74.7 |
MS.gene32055.t1 | AT4G16430 | 30.270 | 185 | 111 | 5 | 2 | 180 | 54 | 226 | 2.01e-13 | 73.6 |
MS.gene32055.t1 | AT4G16430 | 41.748 | 103 | 56 | 3 | 423 | 525 | 286 | 384 | 2.28e-13 | 73.2 |
MS.gene32055.t1 | AT4G00870 | 52.459 | 61 | 29 | 0 | 460 | 520 | 249 | 309 | 4.66e-13 | 72.0 |
MS.gene32055.t1 | AT2G16910 | 43.902 | 82 | 40 | 1 | 438 | 513 | 286 | 367 | 4.70e-13 | 72.8 |
MS.gene32055.t1 | AT4G38070 | 30.405 | 148 | 86 | 4 | 429 | 559 | 54 | 201 | 6.78e-13 | 69.7 |
MS.gene32055.t1 | AT2G22770 | 29.299 | 157 | 104 | 2 | 451 | 600 | 123 | 279 | 7.61e-13 | 70.5 |
MS.gene32055.t1 | AT1G72210 | 26.842 | 190 | 125 | 5 | 461 | 642 | 127 | 310 | 1.07e-12 | 70.1 |
MS.gene32055.t1 | AT5G57150 | 35.714 | 98 | 58 | 1 | 458 | 550 | 53 | 150 | 5.26e-12 | 66.2 |
MS.gene32055.t1 | AT5G57150 | 35.714 | 98 | 58 | 1 | 458 | 550 | 53 | 150 | 6.07e-12 | 66.2 |
MS.gene32055.t1 | AT5G57150 | 35.714 | 98 | 58 | 1 | 458 | 550 | 52 | 149 | 6.25e-12 | 66.2 |
MS.gene32055.t1 | AT5G57150 | 35.714 | 98 | 58 | 1 | 458 | 550 | 52 | 149 | 7.16e-12 | 66.6 |
MS.gene32055.t1 | AT2G22750 | 38.384 | 99 | 48 | 3 | 424 | 509 | 105 | 203 | 7.63e-12 | 67.4 |
MS.gene32055.t1 | AT2G22750 | 38.384 | 99 | 48 | 3 | 424 | 509 | 77 | 175 | 8.20e-12 | 67.0 |
MS.gene32055.t1 | AT2G22750 | 38.384 | 99 | 48 | 3 | 424 | 509 | 101 | 199 | 8.38e-12 | 67.4 |
MS.gene32055.t1 | AT2G22750 | 38.384 | 99 | 48 | 3 | 424 | 509 | 105 | 203 | 8.42e-12 | 67.4 |
MS.gene32055.t1 | AT2G22750 | 38.384 | 99 | 48 | 3 | 424 | 509 | 77 | 175 | 9.33e-12 | 67.0 |
MS.gene32055.t1 | AT4G29930 | 32.609 | 138 | 76 | 5 | 451 | 580 | 45 | 173 | 1.07e-11 | 64.7 |
MS.gene32055.t1 | AT4G29930 | 40.230 | 87 | 46 | 2 | 451 | 537 | 45 | 125 | 1.41e-11 | 65.1 |
MS.gene32055.t1 | AT4G29930 | 40.845 | 71 | 42 | 0 | 451 | 521 | 45 | 115 | 1.56e-11 | 65.1 |
MS.gene32055.t1 | AT5G57150 | 32.031 | 128 | 66 | 3 | 428 | 550 | 39 | 150 | 2.01e-11 | 65.5 |
MS.gene32055.t1 | AT4G29930 | 40.845 | 71 | 42 | 0 | 451 | 521 | 45 | 115 | 2.33e-11 | 64.7 |
MS.gene32055.t1 | AT4G29930 | 41.176 | 85 | 44 | 2 | 451 | 535 | 45 | 123 | 2.52e-11 | 65.1 |
MS.gene32055.t1 | AT4G29930 | 40.845 | 71 | 42 | 0 | 451 | 521 | 45 | 115 | 4.02e-11 | 64.3 |
MS.gene32055.t1 | AT4G29930 | 40.845 | 71 | 42 | 0 | 451 | 521 | 45 | 115 | 4.02e-11 | 64.3 |
MS.gene32055.t1 | AT3G61950 | 29.730 | 148 | 84 | 4 | 460 | 600 | 128 | 262 | 8.11e-11 | 63.9 |
Find 180 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGTTGTGAGGTATAATT+TGG | 0.209014 | 1.2:+55249776 | None:intergenic |
CTCTTTGTGTATGCCCTTCC+TGG | 0.213816 | 1.2:+55253370 | None:intergenic |
TCACGTGTTTGATGAAATTA+AGG | 0.245342 | 1.2:+55252507 | None:intergenic |
GAGGTGGTGGAGGTTGTTTC+CGG | 0.247905 | 1.2:+55250486 | None:intergenic |
ATGGACAAAGCTTCTATATT+AGG | 0.273239 | 1.2:-55250228 | MS.gene32055:CDS |
GGTTCCATTCGTGACGAAAA+TGG | 0.283595 | 1.2:-55250247 | MS.gene32055:CDS |
TTCATCCATGTCGTCTTGAT+TGG | 0.294810 | 1.2:+55252349 | None:intergenic |
TTGAAATGCCCGATGATATT+CGG | 0.302845 | 1.2:-55252199 | MS.gene32055:CDS |
CATAGAGTTCTCTTAGTTGC+TGG | 0.317996 | 1.2:+55256803 | None:intergenic |
GAGTTGAGGATTGAGGTTAT+TGG | 0.318064 | 1.2:-55249913 | MS.gene32055:CDS |
GGTTGAGGAAGTTGGGTTAG+AGG | 0.318388 | 1.2:+55252424 | None:intergenic |
TAGAAGTGGTGTAACGGTTT+TGG | 0.322614 | 1.2:-55250118 | MS.gene32055:CDS |
AGGATTGTTGCTTGATGTTA+TGG | 0.331605 | 1.2:-55249947 | MS.gene32055:CDS |
GTGAAGGAAAATGGTGGAAA+TGG | 0.337697 | 1.2:-55249838 | MS.gene32055:CDS |
GTGGAGGTTGTTTCCGGTGG+TGG | 0.345072 | 1.2:+55250492 | None:intergenic |
TGATTTGACATACAGGATTC+TGG | 0.346846 | 1.2:-55256920 | MS.gene32055:intron |
GGAGGTTGCTGCTTCGGTTC+AGG | 0.361607 | 1.2:-55250022 | MS.gene32055:CDS |
CAATGTTCCATTGTGTTGAT+TGG | 0.366315 | 1.2:+55250601 | None:intergenic |
GAGGCATTGGGAGGTGGTGG+AGG | 0.370793 | 1.2:+55250476 | None:intergenic |
CCCAATCCTCTTTCACCAAC+TGG | 0.373009 | 1.2:-55250542 | MS.gene32055:CDS |
TGAAATGCCCGATGATATTC+GGG | 0.373074 | 1.2:-55252198 | MS.gene32055:CDS |
AGGGGTCACCGCCTGCATCA+TGG | 0.373258 | 1.2:+55250385 | None:intergenic |
AAATTATTTGACCCGTCGTT+TGG | 0.375273 | 1.2:+55252167 | None:intergenic |
GGAGTAAGTTATGTAGTTGA+TGG | 0.375547 | 1.2:+55250566 | None:intergenic |
ATGTGATCGGTTGAGGAAGT+TGG | 0.376648 | 1.2:+55252416 | None:intergenic |
TGAGACGGAGGTTGCTGCTT+CGG | 0.382360 | 1.2:-55250028 | MS.gene32055:CDS |
TTTGAGGAGGCATTGGGAGG+TGG | 0.387314 | 1.2:+55250470 | None:intergenic |
AGAACCATTCAGATTCTGTT+AGG | 0.392300 | 1.2:+55256713 | None:intergenic |
TGTTCCCTTGCCGCGTAACT+TGG | 0.394010 | 1.2:+55250359 | None:intergenic |
TTACCCACAGGTTCTTCAAT+TGG | 0.394970 | 1.2:+55252050 | None:intergenic |
AGGGCTAAGGTGAAGGAAAA+TGG | 0.395483 | 1.2:-55249847 | MS.gene32055:CDS |
TCATCCATGTCGTCTTGATT+GGG | 0.400362 | 1.2:+55252350 | None:intergenic |
TAAGCTTCAAAACATGTTGC+AGG | 0.406229 | 1.2:-55257821 | None:intergenic |
TTACTAGTTGTGAGTAATCA+AGG | 0.407904 | 1.2:-55252128 | MS.gene32055:CDS |
CAAGTTCAACTACCATCTTC+AGG | 0.412992 | 1.2:-55252020 | MS.gene32055:intron |
TCAGATTCTGTTAGGTCCTC+AGG | 0.415594 | 1.2:+55256721 | None:intergenic |
GTGGTGGCAGCGCGTGGAAG+TGG | 0.418946 | 1.2:+55250508 | None:intergenic |
CGCCTGCATCATGGGTTTGA+GGG | 0.420123 | 1.2:+55250394 | None:intergenic |
TGTGATCGGTTGAGGAAGTT+GGG | 0.421244 | 1.2:+55252417 | None:intergenic |
GGATGTATTTGAGGAGGCAT+TGG | 0.421906 | 1.2:+55250463 | None:intergenic |
GTTGAGGGAGTTGAGGATTG+AGG | 0.424843 | 1.2:-55249920 | MS.gene32055:CDS |
GGGGTCACCGCCTGCATCAT+GGG | 0.425082 | 1.2:+55250386 | None:intergenic |
TTGGATGGCGTCGTTGAGTT+TGG | 0.426026 | 1.2:-55252927 | MS.gene32055:CDS |
GTTCAGTCTTCGCTCAATAA+TGG | 0.426434 | 1.2:-55249889 | MS.gene32055:CDS |
TATTGAGAGTGATGCTTTGT+TGG | 0.427384 | 1.2:-55249992 | MS.gene32055:CDS |
AACCCATCTTTGTGTTGAAT+CGG | 0.430063 | 1.2:+55252073 | None:intergenic |
TGTTCTGAAAGTGCTGGCTT+TGG | 0.430911 | 1.2:+55252452 | None:intergenic |
TGAGTTTGGCACAACGGATA+AGG | 0.432226 | 1.2:-55252913 | MS.gene32055:intron |
TCCTCTGCACTAACCTCCAT+TGG | 0.444642 | 1.2:+55256844 | None:intergenic |
TCAATCTGCATCAGCTCACT+TGG | 0.446831 | 1.2:+55252218 | None:intergenic |
CCGCCTGCATCATGGGTTTG+AGG | 0.452835 | 1.2:+55250393 | None:intergenic |
GAGGAGGCATTGGGAGGTGG+TGG | 0.453489 | 1.2:+55250473 | None:intergenic |
AGTGGACTTATAGCCTCTTC+TGG | 0.455737 | 1.2:-55257780 | MS.gene32055:CDS |
ACTATTAATTTACCTGAAGA+TGG | 0.457762 | 1.2:+55252008 | None:intergenic |
CCAGTTGGTGAAAGAGGATT+GGG | 0.458813 | 1.2:+55250542 | None:intergenic |
GCAGCGCGTGGAAGTGGTGG+TGG | 0.460378 | 1.2:+55250514 | None:intergenic |
CGGCTAGAGTGCTAATATAC+AGG | 0.460995 | 1.2:-55253110 | MS.gene32055:intron |
TGACATACAGGATTCTGGTA+TGG | 0.463484 | 1.2:-55256915 | MS.gene32055:intron |
TCAGAATCTGAAGACGAAAC+AGG | 0.465408 | 1.2:-55252284 | MS.gene32055:CDS |
TGGTAATGTTGAGGGAGTTG+AGG | 0.465496 | 1.2:-55249927 | MS.gene32055:CDS |
GGGTCCAACAGAGAAGAAAA+AGG | 0.466081 | 1.2:-55250094 | MS.gene32055:CDS |
TCCAGTTGGTGAAAGAGGAT+TGG | 0.466348 | 1.2:+55250541 | None:intergenic |
CTGTGAAGAGGATGTATTTG+AGG | 0.466470 | 1.2:+55250454 | None:intergenic |
GTGGTGGTGGTTGGTCCAGT+TGG | 0.466928 | 1.2:+55250527 | None:intergenic |
GATTGGGATTTGTAGAGGGT+GGG | 0.467067 | 1.2:+55252366 | None:intergenic |
TCCCTTGCCGCGTAACTTGG+CGG | 0.467265 | 1.2:+55250362 | None:intergenic |
TGAAGGAAAATGGTGGAAAT+GGG | 0.468007 | 1.2:-55249837 | MS.gene32055:CDS |
TCCCCTCAAACCCATGATGC+AGG | 0.468019 | 1.2:-55250396 | MS.gene32055:CDS |
GTTGGTCCAGTTGGTGAAAG+AGG | 0.468465 | 1.2:+55250536 | None:intergenic |
GACATACAGGATTCTGGTAT+GGG | 0.470639 | 1.2:-55256914 | MS.gene32055:intron |
TTCAAGAGCTATTCTAGCTA+AGG | 0.470826 | 1.2:-55253299 | MS.gene32055:intron |
ATTGAGTGTTTGCATAGAGA+AGG | 0.471413 | 1.2:-55249967 | MS.gene32055:CDS |
GATGTATTTGAGGAGGCATT+GGG | 0.472065 | 1.2:+55250464 | None:intergenic |
TGTGGTATGCATTCCTGTAT+TGG | 0.472277 | 1.2:-55252946 | MS.gene32055:CDS |
ACACAAAGAGACAGCATGTA+TGG | 0.473379 | 1.2:-55253357 | MS.gene32055:CDS |
CTCCGCCAAGTTACGCGGCA+AGG | 0.483118 | 1.2:-55250364 | MS.gene32055:CDS |
TGATTGGGATTTGTAGAGGG+TGG | 0.486223 | 1.2:+55252365 | None:intergenic |
AAACCGATTCAACACAAAGA+TGG | 0.487993 | 1.2:-55252076 | MS.gene32055:CDS |
TTGCCGCGTAACTTGGCGGA+GGG | 0.490478 | 1.2:+55250366 | None:intergenic |
TCTGAAAGTGCTGGCTTTGG+CGG | 0.493095 | 1.2:+55252455 | None:intergenic |
TTCGTCGCTCCGCGAGGACA+TGG | 0.493393 | 1.2:+55250313 | None:intergenic |
TGCCCGATGATATTCGGGTT+GGG | 0.493884 | 1.2:-55252193 | MS.gene32055:CDS |
GTGGCAGCGCGTGGAAGTGG+TGG | 0.496583 | 1.2:+55250511 | None:intergenic |
CTTCCACGCGCTGCCACCAC+CGG | 0.497913 | 1.2:-55250505 | MS.gene32055:CDS |
TATATATAAGGTTGCCAGGA+AGG | 0.500355 | 1.2:-55253384 | MS.gene32055:intron |
CTCTATGAATCATTGTCTGC+CGG | 0.501432 | 1.2:-55256787 | MS.gene32055:CDS |
AGGATTCTGGTATGGGGTGA+TGG | 0.503669 | 1.2:-55256907 | MS.gene32055:CDS |
TTTCCGGTGGTGGCAGCGCG+TGG | 0.505786 | 1.2:+55250502 | None:intergenic |
GCACTATATATAAGGTTGCC+AGG | 0.507294 | 1.2:-55253388 | MS.gene32055:intron |
TCAACGACGCCATCCAATAC+AGG | 0.508599 | 1.2:+55252933 | None:intergenic |
GGTAGGAATGTGATCGGTTG+AGG | 0.510024 | 1.2:+55252409 | None:intergenic |
CTCAACTGCTTTCGCTCTCG+TGG | 0.513238 | 1.2:+55250047 | None:intergenic |
TGCATCATGGGTTTGAGGGG+AGG | 0.517351 | 1.2:+55250398 | None:intergenic |
TGTTGCGGAGTTGAGGGCTA+AGG | 0.522771 | 1.2:-55249860 | MS.gene32055:CDS |
GTTGTTCAGTCTCTATCTGA+CGG | 0.523038 | 1.2:+55250145 | None:intergenic |
CGCGTGGAAGTGGTGGTGGT+TGG | 0.524425 | 1.2:+55250518 | None:intergenic |
CTCTACAATAGCTGCCATTG+AGG | 0.529319 | 1.2:+55252241 | None:intergenic |
TGATGTTATGGTAATGTTGA+GGG | 0.530343 | 1.2:-55249935 | MS.gene32055:CDS |
AGTTGGTGGATTTGTCTCTC+CGG | 0.531556 | 1.2:+55256768 | None:intergenic |
CTTGCCGCGTAACTTGGCGG+AGG | 0.532091 | 1.2:+55250365 | None:intergenic |
GTGGTGGAGGTTGTTTCCGG+TGG | 0.532605 | 1.2:+55250489 | None:intergenic |
TACGAGTCCACGTGTCCTGA+CGG | 0.533941 | 1.2:+55252101 | None:intergenic |
GACCCAACCCGAATATCATC+GGG | 0.540240 | 1.2:+55252191 | None:intergenic |
TCCGCCAAGTTACGCGGCAA+GGG | 0.540559 | 1.2:-55250363 | MS.gene32055:CDS |
GCACATGGACGACGAGTTGG+TGG | 0.545968 | 1.2:+55256754 | None:intergenic |
GTTGAGTGTTCTGAAAGTGC+TGG | 0.548282 | 1.2:+55252446 | None:intergenic |
TAAGTTATGTAGTTGATGGA+AGG | 0.550632 | 1.2:+55250570 | None:intergenic |
AGTAATCAAGGAAACCCGTC+AGG | 0.550819 | 1.2:-55252116 | MS.gene32055:CDS |
AACCGATTCAACACAAAGAT+GGG | 0.550895 | 1.2:-55252075 | MS.gene32055:CDS |
GCTTTGGCGGCAAAGAGTGA+TGG | 0.555266 | 1.2:+55252468 | None:intergenic |
TCTTGATTGGGATTTGTAGA+GGG | 0.555864 | 1.2:+55252362 | None:intergenic |
GAGAGCGAAAGCAGTTGAGA+CGG | 0.556085 | 1.2:-55250043 | MS.gene32055:CDS |
ATGCCCGATGATATTCGGGT+TGG | 0.557418 | 1.2:-55252194 | MS.gene32055:CDS |
AGACCCAACCCGAATATCAT+CGG | 0.558175 | 1.2:+55252190 | None:intergenic |
ACGAGTCCACGTGTCCTGAC+GGG | 0.558448 | 1.2:+55252102 | None:intergenic |
AGCGAAAGCAGTTGAGACGG+AGG | 0.558576 | 1.2:-55250040 | MS.gene32055:CDS |
AGGACCTAACAGAATCTGAA+TGG | 0.560680 | 1.2:-55256717 | MS.gene32055:CDS |
ACTGAACAACAAAGTAGAAG+TGG | 0.562802 | 1.2:-55250132 | MS.gene32055:CDS |
GCCTGCATCATGGGTTTGAG+GGG | 0.563948 | 1.2:+55250395 | None:intergenic |
GAAGCACATGGACGACGAGT+TGG | 0.564910 | 1.2:+55256751 | None:intergenic |
AGACAGCATGTATGGCTCAC+GGG | 0.565294 | 1.2:-55253349 | MS.gene32055:CDS |
ATATATAAGGTTGCCAGGAA+GGG | 0.568067 | 1.2:-55253383 | MS.gene32055:intron |
TTACCGACGTGCAACCTCAA+TGG | 0.568943 | 1.2:-55252255 | MS.gene32055:CDS |
TTTGAGGGGAGGTTTCGTCA+TGG | 0.570500 | 1.2:+55250409 | None:intergenic |
TCGCTCCGCGAGGACATGGT+TGG | 0.570780 | 1.2:+55250317 | None:intergenic |
GTGAGGATTGTTGAAGAATG+TGG | 0.571926 | 1.2:-55250072 | MS.gene32055:CDS |
ATGTGCTTCCTTGTCACCTG+AGG | 0.574896 | 1.2:-55256737 | MS.gene32055:CDS |
GTATTTGAGGAGGCATTGGG+AGG | 0.574965 | 1.2:+55250467 | None:intergenic |
TTGATGTTATGGTAATGTTG+AGG | 0.575487 | 1.2:-55249936 | MS.gene32055:CDS |
GTCTTGATTGGGATTTGTAG+AGG | 0.577629 | 1.2:+55252361 | None:intergenic |
TGGGAAGAAAGTTAGTATTG+TGG | 0.581181 | 1.2:-55249818 | MS.gene32055:CDS |
GGAGTTGAGGGCTAAGGTGA+AGG | 0.582755 | 1.2:-55249854 | MS.gene32055:CDS |
TGTAGAGGGTGGGTCTGCCA+TGG | 0.583492 | 1.2:+55252376 | None:intergenic |
TGCCGCGTAACTTGGCGGAG+GGG | 0.583617 | 1.2:+55250367 | None:intergenic |
CGGGTCAAATAATTTAGACT+CGG | 0.585244 | 1.2:-55252159 | MS.gene32055:CDS |
ATGATGACGTACAGTTGTTG+TGG | 0.586185 | 1.2:+55257748 | None:intergenic |
GACCCCTCCGCCAAGTTACG+CGG | 0.589508 | 1.2:-55250369 | MS.gene32055:CDS |
GTCTGCCATGGTGTACATGA+TGG | 0.591460 | 1.2:+55252388 | None:intergenic |
GAGACAGCATGTATGGCTCA+CGG | 0.591616 | 1.2:-55253350 | MS.gene32055:CDS |
CTGCAGTGCAATCTGTTCAG+TGG | 0.594326 | 1.2:-55257798 | MS.gene32055:CDS |
TTCAAAACCAATCAACACAA+TGG | 0.597027 | 1.2:-55250608 | MS.gene32055:CDS |
TGATGACGTACAGTTGTTGT+GGG | 0.599654 | 1.2:+55257749 | None:intergenic |
TGTTAGGTCCTCAGGTGACA+AGG | 0.602958 | 1.2:+55256729 | None:intergenic |
GTGGGCAAAGTTGCCAGAAG+AGG | 0.606474 | 1.2:+55257767 | None:intergenic |
GGTTCCAATTGAAGAACCTG+TGG | 0.606596 | 1.2:-55252054 | MS.gene32055:CDS |
TTGGCGCTCAGCTCGTCTTG+CGG | 0.606797 | 1.2:+55250336 | None:intergenic |
ACAAAGTAGAAGTGGTGTAA+CGG | 0.607690 | 1.2:-55250124 | MS.gene32055:CDS |
GGGTTGGGTCTCCAAACGAC+GGG | 0.610298 | 1.2:-55252178 | MS.gene32055:CDS |
AGGAAACCCGTCAGGACACG+TGG | 0.614112 | 1.2:-55252108 | MS.gene32055:CDS |
CGTCGTTGAGTTTGGCACAA+CGG | 0.614890 | 1.2:-55252919 | MS.gene32055:CDS |
TCGAAAGACAGTGCAACCAA+TGG | 0.615013 | 1.2:-55256860 | MS.gene32055:CDS |
ACCAATGGAGGTTAGTGCAG+AGG | 0.616075 | 1.2:-55256845 | MS.gene32055:CDS |
AAAGACAGTGCAACCAATGG+AGG | 0.619772 | 1.2:-55256857 | MS.gene32055:CDS |
ATGGCTCACGGGTGCAAATG+AGG | 0.624999 | 1.2:-55253338 | MS.gene32055:CDS |
CGGGTTGGGTCTCCAAACGA+CGG | 0.625009 | 1.2:-55252179 | MS.gene32055:CDS |
AAAATGCACTAAATGTTGTG+AGG | 0.625427 | 1.2:+55249766 | None:intergenic |
ACTTGTAGCGAATTACCCAC+AGG | 0.629882 | 1.2:+55252038 | None:intergenic |
GTATGCATTCCTGTATTGGA+TGG | 0.632942 | 1.2:-55252942 | MS.gene32055:CDS |
TGAGTTACTTACCCTACACC+AGG | 0.633728 | 1.2:+55256661 | None:intergenic |
TGGGGTGATGGATATTACAA+TGG | 0.635135 | 1.2:-55256895 | MS.gene32055:CDS |
CTCTTCTTCGTCGCTCCGCG+AGG | 0.637033 | 1.2:+55250307 | None:intergenic |
GAAGAGAGAAACTCAACGAG+AGG | 0.637311 | 1.2:-55250290 | MS.gene32055:CDS |
AAATCCCAATCAAGACGACA+TGG | 0.638757 | 1.2:-55252354 | MS.gene32055:CDS |
GCCATGGTGTACATGATGGT+AGG | 0.641072 | 1.2:+55252392 | None:intergenic |
GCTAAGGTGAAGGAAAATGG+TGG | 0.644258 | 1.2:-55249844 | MS.gene32055:CDS |
TCAGGTGACAAGGAAGCACA+TGG | 0.644950 | 1.2:+55256739 | None:intergenic |
GGAGGTATGGGACTGTGAAG+AGG | 0.648050 | 1.2:+55250442 | None:intergenic |
CCTCAAACCCATGATGCAGG+CGG | 0.654380 | 1.2:-55250393 | MS.gene32055:CDS |
TGAAGAGGATGTATTTGAGG+AGG | 0.655583 | 1.2:+55250457 | None:intergenic |
ACATACAGGATTCTGGTATG+GGG | 0.662130 | 1.2:-55256913 | MS.gene32055:intron |
GCTCACGGGTGCAAATGAGG+TGG | 0.662470 | 1.2:-55253335 | MS.gene32055:CDS |
GTTGGTGAAAGAGGATTGGG+AGG | 0.663743 | 1.2:+55250545 | None:intergenic |
GTTCCAATTGAAGAACCTGT+GGG | 0.680082 | 1.2:-55252053 | MS.gene32055:CDS |
CATGATGGTAGGAATGTGAT+CGG | 0.682068 | 1.2:+55252403 | None:intergenic |
AGACGACATGGATGAAGACG+AGG | 0.694697 | 1.2:-55252342 | MS.gene32055:CDS |
GAGCGCCAACCATGTCCTCG+CGG | 0.700534 | 1.2:-55250322 | MS.gene32055:CDS |
GAATCTGAAGACGAAACAGG+AGG | 0.710791 | 1.2:-55252281 | MS.gene32055:CDS |
TCCTACCATCATGTACACCA+TGG | 0.714693 | 1.2:-55252393 | MS.gene32055:CDS |
GTTACTTACCCTACACCAGG+AGG | 0.750268 | 1.2:+55256664 | None:intergenic |
CTGCCATTGAGGTTGCACGT+CGG | 0.759083 | 1.2:+55252252 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 55249774 | 55257830 | 55249774 | ID=MS.gene32055 |
chr1.2 | mRNA | 55249774 | 55257830 | 55249774 | ID=MS.gene32055.t1;Parent=MS.gene32055 |
chr1.2 | exon | 55257760 | 55257830 | 55257760 | ID=MS.gene32055.t1.exon1;Parent=MS.gene32055.t1 |
chr1.2 | CDS | 55257760 | 55257830 | 55257760 | ID=cds.MS.gene32055.t1;Parent=MS.gene32055.t1 |
chr1.2 | exon | 55256673 | 55256927 | 55256673 | ID=MS.gene32055.t1.exon2;Parent=MS.gene32055.t1 |
chr1.2 | CDS | 55256673 | 55256927 | 55256673 | ID=cds.MS.gene32055.t1;Parent=MS.gene32055.t1 |
chr1.2 | exon | 55253300 | 55253396 | 55253300 | ID=MS.gene32055.t1.exon3;Parent=MS.gene32055.t1 |
chr1.2 | CDS | 55253300 | 55253396 | 55253300 | ID=cds.MS.gene32055.t1;Parent=MS.gene32055.t1 |
chr1.2 | exon | 55253111 | 55253125 | 55253111 | ID=MS.gene32055.t1.exon4;Parent=MS.gene32055.t1 |
chr1.2 | CDS | 55253111 | 55253125 | 55253111 | ID=cds.MS.gene32055.t1;Parent=MS.gene32055.t1 |
chr1.2 | exon | 55252914 | 55252970 | 55252914 | ID=MS.gene32055.t1.exon5;Parent=MS.gene32055.t1 |
chr1.2 | CDS | 55252914 | 55252970 | 55252914 | ID=cds.MS.gene32055.t1;Parent=MS.gene32055.t1 |
chr1.2 | exon | 55252021 | 55252540 | 55252021 | ID=MS.gene32055.t1.exon6;Parent=MS.gene32055.t1 |
chr1.2 | CDS | 55252021 | 55252540 | 55252021 | ID=cds.MS.gene32055.t1;Parent=MS.gene32055.t1 |
chr1.2 | exon | 55249774 | 55250699 | 55249774 | ID=MS.gene32055.t1.exon7;Parent=MS.gene32055.t1 |
chr1.2 | CDS | 55249774 | 55250699 | 55249774 | ID=cds.MS.gene32055.t1;Parent=MS.gene32055.t1 |
Gene Sequence |
Protein sequence |