Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32066.t1 | XP_024632961.1 | 84.9 | 800 | 93 | 4 | 1 | 772 | 1 | 800 | 0.00E+00 | 1357.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32066.t1 | Q9SZL8 | 27.0 | 636 | 394 | 11 | 32 | 665 | 70 | 637 | 5.7e-64 | 247.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32066.t1 | D3YBB9 | 77.0 | 774 | 158 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1196.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene32066.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32066.t1 | MTR_0558s0020 | 87.838 | 296 | 35 | 1 | 1 | 295 | 1 | 296 | 0.0 | 550 |
MS.gene32066.t1 | MTR_1g083640 | 83.451 | 284 | 31 | 1 | 1 | 268 | 1 | 284 | 6.54e-173 | 498 |
MS.gene32066.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 2.20e-152 | 444 |
MS.gene32066.t1 | MTR_6g090505 | 83.966 | 237 | 38 | 0 | 65 | 301 | 1 | 237 | 6.10e-143 | 425 |
MS.gene32066.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 3.66e-34 | 135 |
MS.gene32066.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 9.10e-11 | 64.7 |
MS.gene32066.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 5.67e-142 | 418 |
MS.gene32066.t1 | MTR_0337s0040 | 72.031 | 261 | 33 | 2 | 1 | 260 | 1 | 222 | 4.73e-124 | 371 |
MS.gene32066.t1 | MTR_3g008240 | 84.729 | 203 | 30 | 1 | 1 | 202 | 1 | 203 | 1.96e-118 | 355 |
MS.gene32066.t1 | MTR_4g040430 | 84.158 | 202 | 28 | 1 | 1 | 202 | 1 | 198 | 5.59e-118 | 354 |
MS.gene32066.t1 | MTR_0337s0060 | 58.861 | 316 | 30 | 4 | 447 | 759 | 21 | 239 | 1.45e-108 | 331 |
MS.gene32066.t1 | MTR_5g071590 | 73.889 | 180 | 34 | 2 | 1 | 167 | 1 | 180 | 7.69e-90 | 280 |
MS.gene32066.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 7.70e-87 | 271 |
MS.gene32066.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 82 | 233 | 9 | 160 | 6.17e-86 | 269 |
MS.gene32066.t1 | MTR_3g028680 | 81.013 | 158 | 27 | 1 | 618 | 772 | 1 | 158 | 6.20e-84 | 265 |
MS.gene32066.t1 | MTR_2g067090 | 78.065 | 155 | 31 | 1 | 621 | 772 | 99 | 253 | 3.16e-75 | 246 |
MS.gene32066.t1 | MTR_4g133495 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 4.13e-66 | 221 |
MS.gene32066.t1 | MTR_4g133340 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 4.13e-66 | 221 |
MS.gene32066.t1 | MTR_1281s0010 | 81.651 | 109 | 20 | 0 | 19 | 127 | 1 | 109 | 6.07e-57 | 190 |
MS.gene32066.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.19e-38 | 147 |
MS.gene32066.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 1.78e-31 | 131 |
MS.gene32066.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.66e-31 | 122 |
MS.gene32066.t1 | MTR_2g067130 | 62.963 | 81 | 24 | 2 | 695 | 772 | 46 | 123 | 5.38e-22 | 93.6 |
MS.gene32066.t1 | MTR_1g070355 | 26.852 | 324 | 216 | 6 | 41 | 362 | 80 | 384 | 2.47e-19 | 92.8 |
MS.gene32066.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 2.07e-14 | 77.0 |
MS.gene32066.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.48e-13 | 67.0 |
MS.gene32066.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 7.76e-13 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32066.t1 | AT4G38180 | 27.769 | 641 | 383 | 13 | 32 | 665 | 70 | 637 | 1.18e-70 | 247 |
MS.gene32066.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene32066.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene32066.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene32066.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene32066.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene32066.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.04e-53 | 200 |
MS.gene32066.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.04e-53 | 200 |
MS.gene32066.t1 | AT2G27110 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 5.23e-53 | 196 |
MS.gene32066.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.47e-52 | 194 |
MS.gene32066.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.47e-52 | 194 |
MS.gene32066.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.47e-52 | 194 |
MS.gene32066.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 2.94e-50 | 187 |
MS.gene32066.t1 | AT1G76320 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 1.22e-49 | 187 |
MS.gene32066.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.45e-49 | 186 |
MS.gene32066.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.45e-49 | 186 |
MS.gene32066.t1 | AT3G22170 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 8.68e-48 | 182 |
MS.gene32066.t1 | AT3G22170 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 8.68e-48 | 182 |
MS.gene32066.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 1.99e-46 | 178 |
MS.gene32066.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 1.99e-46 | 178 |
MS.gene32066.t1 | AT4G38170 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.50e-44 | 167 |
MS.gene32066.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.94e-42 | 163 |
MS.gene32066.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.94e-42 | 163 |
MS.gene32066.t1 | AT5G28530 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 7.62e-42 | 163 |
MS.gene32066.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.13e-41 | 160 |
MS.gene32066.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.13e-41 | 160 |
MS.gene32066.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.13e-39 | 157 |
MS.gene32066.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.50e-39 | 157 |
MS.gene32066.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.50e-39 | 157 |
MS.gene32066.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene32066.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene32066.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene32066.t1 | AT2G32250 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 7.26e-39 | 155 |
MS.gene32066.t1 | AT2G32250 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 8.55e-39 | 154 |
MS.gene32066.t1 | AT1G80010 | 23.758 | 644 | 386 | 23 | 41 | 662 | 101 | 661 | 3.41e-36 | 146 |
MS.gene32066.t1 | AT1G52520 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 1.77e-33 | 138 |
MS.gene32066.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.45e-27 | 119 |
MS.gene32066.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.10e-12 | 71.2 |
MS.gene32066.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.76e-27 | 119 |
MS.gene32066.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.44e-12 | 71.2 |
MS.gene32066.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.78e-27 | 119 |
MS.gene32066.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.29e-12 | 71.2 |
MS.gene32066.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.78e-27 | 119 |
MS.gene32066.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.29e-12 | 71.2 |
MS.gene32066.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.83e-27 | 119 |
MS.gene32066.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.35e-12 | 71.2 |
MS.gene32066.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.95e-27 | 118 |
MS.gene32066.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.28e-12 | 71.2 |
MS.gene32066.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.95e-27 | 118 |
MS.gene32066.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.28e-12 | 71.2 |
MS.gene32066.t1 | AT5G28530 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.53e-22 | 103 |
MS.gene32066.t1 | AT5G28530 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 7.44e-22 | 101 |
Find 116 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 1.2:+55346849 | MS.gene32066:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 1.2:+55346540 | MS.gene32066:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 1.2:-55347675 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1.2:+55346807 | MS.gene32066:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 1.2:+55345756 | MS.gene32066:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 1.2:+55346259 | MS.gene32066:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 1.2:+55346292 | MS.gene32066:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 1.2:-55346386 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 1.2:-55347669 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 1.2:+55346581 | MS.gene32066:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 1.2:+55347521 | MS.gene32066:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 1.2:-55346404 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1.2:-55345806 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 1.2:+55347104 | MS.gene32066:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 1.2:+55346681 | MS.gene32066:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 1.2:+55347513 | MS.gene32066:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 1.2:+55345813 | MS.gene32066:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1.2:+55345805 | MS.gene32066:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 1.2:+55346680 | MS.gene32066:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 1.2:-55347397 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 1.2:-55345276 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 1.2:+55347661 | MS.gene32066:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 1.2:-55347651 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1.2:+55346981 | MS.gene32066:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 1.2:+55347546 | MS.gene32066:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 1.2:+55345047 | MS.gene32066:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 1.2:+55347229 | MS.gene32066:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 1.2:-55347152 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 1.2:+55345118 | MS.gene32066:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 1.2:-55347153 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1.2:+55345453 | MS.gene32066:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 1.2:+55345335 | MS.gene32066:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 1.2:-55346397 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1.2:+55345318 | MS.gene32066:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 1.2:-55347330 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 1.2:+55345201 | MS.gene32066:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 1.2:+55345483 | MS.gene32066:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 1.2:+55344972 | MS.gene32066:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 1.2:+55346471 | MS.gene32066:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 1.2:+55346635 | MS.gene32066:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 1.2:+55347230 | MS.gene32066:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 1.2:+55345167 | MS.gene32066:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 1.2:+55347187 | MS.gene32066:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 1.2:+55345528 | MS.gene32066:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1.2:-55346983 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 1.2:-55345312 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 1.2:+55345105 | MS.gene32066:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 1.2:+55347622 | MS.gene32066:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 1.2:+55345596 | MS.gene32066:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 1.2:-55345423 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 1.2:+55345161 | MS.gene32066:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1.2:+55346997 | MS.gene32066:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 1.2:-55346272 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 1.2:+55346582 | MS.gene32066:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 1.2:+55345609 | MS.gene32066:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1.2:+55346821 | MS.gene32066:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 1.2:-55346901 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 1.2:+55345515 | MS.gene32066:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 1.2:-55345701 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 1.2:+55347621 | MS.gene32066:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 1.2:-55345411 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 1.2:+55346668 | MS.gene32066:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 1.2:+55347166 | MS.gene32066:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 1.2:-55345567 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 1.2:+55346840 | MS.gene32066:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 1.2:+55346686 | MS.gene32066:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 1.2:+55345371 | MS.gene32066:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 1.2:-55347146 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 1.2:-55346789 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 1.2:+55345212 | MS.gene32066:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 1.2:+55347167 | MS.gene32066:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1.2:-55346978 | None:intergenic |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 1.2:+55347186 | MS.gene32066:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 1.2:-55346784 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1.2:+55346998 | MS.gene32066:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1.2:+55345213 | MS.gene32066:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 1.2:+55345037 | MS.gene32066:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 1.2:-55346417 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 1.2:+55347387 | MS.gene32066:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 1.2:+55345663 | MS.gene32066:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 1.2:+55344996 | MS.gene32066:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 1.2:+55345531 | MS.gene32066:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 1.2:+55347473 | MS.gene32066:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 1.2:+55345370 | MS.gene32066:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 1.2:-55346902 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 1.2:-55347633 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 1.2:-55346923 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 1.2:+55344961 | MS.gene32066:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 1.2:+55345522 | MS.gene32066:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 1.2:+55347514 | MS.gene32066:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 1.2:+55346403 | MS.gene32066:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 1.2:+55347509 | MS.gene32066:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 1.2:+55347136 | MS.gene32066:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 1.2:-55347589 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 1.2:+55345602 | MS.gene32066:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 1.2:+55345516 | MS.gene32066:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 1.2:+55345605 | MS.gene32066:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 1.2:+55347476 | MS.gene32066:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 1.2:+55346899 | MS.gene32066:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1.2:+55346984 | MS.gene32066:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 1.2:-55347421 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 1.2:-55345261 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 1.2:-55346637 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 1.2:+55345536 | MS.gene32066:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 1.2:-55347151 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 1.2:+55346472 | MS.gene32066:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 1.2:-55347394 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1.2:+55346822 | MS.gene32066:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 1.2:-55347372 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 1.2:-55346943 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 1.2:+55347498 | MS.gene32066:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 1.2:-55347248 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 1.2:+55346399 | MS.gene32066:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 1.2:+55347231 | MS.gene32066:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 1.2:+55347082 | MS.gene32066:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 1.2:+55347083 | MS.gene32066:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACCATAATTATAGTTTAA+TGG | - | chr1.2:55348048-55348067 | None:intergenic | 15.0% |
!! | AAACCATTAAACTATAATTA+TGG | + | chr1.2:55348042-55348061 | MS.gene32066:intron | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr1.2:55347801-55347820 | MS.gene32066:intron | 15.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr1.2:55345370-55345389 | MS.gene32066:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr1.2:55345161-55345180 | MS.gene32066:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr1.2:55345371-55345390 | MS.gene32066:CDS | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr1.2:55345105-55345124 | MS.gene32066:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr1.2:55345988-55346007 | MS.gene32066:intron | 20.0% |
!!! | ACGCATTTATTACTATATTT+TGG | + | chr1.2:55347972-55347991 | MS.gene32066:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr1.2:55346610-55346629 | MS.gene32066:CDS | 20.0% |
!!! | CTATACATTTTCACATTTTT+TGG | + | chr1.2:55347944-55347963 | MS.gene32066:intron | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr1.2:55345960-55345979 | MS.gene32066:intron | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr1.2:55346448-55346467 | None:intergenic | 25.0% |
! | AAACCAAATTAACAGTCTAA+TGG | - | chr1.2:55348005-55348024 | None:intergenic | 25.0% |
! | AAACCATTAGACTGTTAATT+TGG | + | chr1.2:55347999-55348018 | MS.gene32066:intron | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr1.2:55347899-55347918 | MS.gene32066:intron | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr1.2:55345167-55345186 | MS.gene32066:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr1.2:55345805-55345824 | MS.gene32066:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr1.2:55345831-55345850 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr1.2:55346981-55347000 | None:intergenic | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr1.2:55345037-55345056 | MS.gene32066:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr1.2:55346807-55346826 | MS.gene32066:CDS | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr1.2:55344996-55345015 | MS.gene32066:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr1.2:55345878-55345897 | MS.gene32066:intron | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr1.2:55346946-55346965 | None:intergenic | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr1.2:55347832-55347851 | MS.gene32066:intron | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr1.2:55346981-55347000 | MS.gene32066:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr1.2:55346540-55346559 | MS.gene32066:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr1.2:55345980-55345999 | MS.gene32066:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr1.2:55346236-55346255 | MS.gene32066:intron | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | + | chr1.2:55347918-55347937 | MS.gene32066:intron | 25.0% |
!! | TTTTCAATTACTGAGTTAAG+TGG | + | chr1.2:55348076-55348095 | MS.gene32066:intron | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr1.2:55347082-55347101 | MS.gene32066:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr1.2:55345157-55345176 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr1.2:55345987-55346006 | MS.gene32066:intron | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr1.2:55345483-55345502 | MS.gene32066:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr1.2:55346614-55346633 | MS.gene32066:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr1.2:55347083-55347102 | MS.gene32066:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr1.2:55346051-55346070 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr1.2:55345213-55345232 | MS.gene32066:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr1.2:55345813-55345832 | MS.gene32066:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | + | chr1.2:55347661-55347680 | MS.gene32066:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr1.2:55346581-55346600 | MS.gene32066:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr1.2:55345516-55345535 | MS.gene32066:CDS | 30.0% | |
ATATTAACTTCATCTGAGAG+TGG | + | chr1.2:55344961-55344980 | MS.gene32066:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr1.2:55346582-55346601 | MS.gene32066:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr1.2:55346275-55346294 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | - | chr1.2:55347154-55347173 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr1.2:55345756-55345775 | MS.gene32066:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr1.2:55345201-55345220 | MS.gene32066:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr1.2:55346986-55347005 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr1.2:55345917-55345936 | MS.gene32066:intron | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr1.2:55346984-55347003 | MS.gene32066:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | + | chr1.2:55346496-55346515 | MS.gene32066:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr1.2:55347155-55347174 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr1.2:55345809-55345828 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr1.2:55345302-55345321 | MS.gene32066:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr1.2:55345047-55345066 | MS.gene32066:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr1.2:55346792-55346811 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr1.2:55345212-55345231 | MS.gene32066:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr1.2:55345684-55345703 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr1.2:55346926-55346945 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr1.2:55347672-55347691 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr1.2:55345570-55345589 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr1.2:55346195-55346214 | MS.gene32066:intron | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr1.2:55345414-55345433 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr1.2:55345335-55345354 | MS.gene32066:CDS | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr1.2:55347041-55347060 | MS.gene32066:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr1.2:55345560-55345579 | MS.gene32066:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | + | chr1.2:55347498-55347517 | MS.gene32066:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr1.2:55346389-55346408 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr1.2:55346439-55346458 | MS.gene32066:CDS | 30.0% |
! | TCAGTTTTCAATTCAATGAG+TGG | - | chr1.2:55348220-55348239 | None:intergenic | 30.0% |
! | TGAGGCTTTAACAAATTAAG+CGG | + | chr1.2:55347770-55347789 | MS.gene32066:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr1.2:55347654-55347673 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr1.2:55347266-55347285 | MS.gene32066:CDS | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr1.2:55347166-55347185 | MS.gene32066:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr1.2:55345892-55345911 | MS.gene32066:intron | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr1.2:55347546-55347565 | MS.gene32066:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr1.2:55347167-55347186 | MS.gene32066:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr1.2:55347263-55347282 | MS.gene32066:CDS | 30.0% |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr1.2:55345718-55345737 | MS.gene32066:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr1.2:55345719-55345738 | MS.gene32066:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr1.2:55347331-55347350 | MS.gene32066:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr1.2:55346451-55346470 | MS.gene32066:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr1.2:55346821-55346840 | MS.gene32066:CDS | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | + | chr1.2:55345118-55345137 | MS.gene32066:CDS | 35.0% | |
CATAAATTCCAAGGCAAGAT+AGG | - | chr1.2:55346018-55346037 | None:intergenic | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr1.2:55346822-55346841 | MS.gene32066:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr1.2:55345453-55345472 | MS.gene32066:CDS | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | - | chr1.2:55347156-55347175 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr1.2:55345301-55345320 | MS.gene32066:CDS | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | + | chr1.2:55346668-55346687 | MS.gene32066:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr1.2:55345296-55345315 | MS.gene32066:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr1.2:55347752-55347771 | MS.gene32066:intron | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | + | chr1.2:55347727-55347746 | MS.gene32066:intron | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr1.2:55345515-55345534 | MS.gene32066:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr1.2:55345238-55345257 | MS.gene32066:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr1.2:55345596-55345615 | MS.gene32066:CDS | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr1.2:55346027-55346046 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr1.2:55345279-55345298 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr1.2:55346292-55346311 | MS.gene32066:CDS | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr1.2:55347771-55347790 | MS.gene32066:intron | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr1.2:55347104-55347123 | MS.gene32066:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr1.2:55346751-55346770 | MS.gene32066:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr1.2:55345898-55345917 | MS.gene32066:intron | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr1.2:55346624-55346643 | MS.gene32066:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr1.2:55346464-55346483 | MS.gene32066:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr1.2:55347600-55347619 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr1.2:55347333-55347352 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr1.2:55346681-55346700 | MS.gene32066:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr1.2:55347273-55347292 | MS.gene32066:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr1.2:55346335-55346354 | MS.gene32066:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr1.2:55347334-55347353 | MS.gene32066:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr1.2:55346787-55346806 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr1.2:55346145-55346164 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr1.2:55347678-55347697 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | + | chr1.2:55344972-55344991 | MS.gene32066:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr1.2:55346998-55347017 | MS.gene32066:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr1.2:55347230-55347249 | MS.gene32066:CDS | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr1.2:55346031-55346050 | MS.gene32066:intron | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr1.2:55347509-55347528 | MS.gene32066:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr1.2:55347229-55347248 | MS.gene32066:CDS | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr1.2:55347387-55347406 | MS.gene32066:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr1.2:55347375-55347394 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | + | chr1.2:55348163-55348182 | MS.gene32066:intron | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr1.2:55347400-55347419 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | + | chr1.2:55346997-55347016 | MS.gene32066:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr1.2:55346399-55346418 | MS.gene32066:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr1.2:55346141-55346160 | MS.gene32066:intron | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | - | chr1.2:55345730-55345749 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr1.2:55346400-55346419 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr1.2:55346259-55346278 | MS.gene32066:intron | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr1.2:55347136-55347155 | MS.gene32066:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr1.2:55347397-55347416 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr1.2:55347740-55347759 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr1.2:55346849-55346868 | MS.gene32066:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr1.2:55347592-55347611 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr1.2:55347276-55347295 | MS.gene32066:CDS | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr1.2:55346680-55346699 | MS.gene32066:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr1.2:55345252-55345271 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr1.2:55345522-55345541 | MS.gene32066:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr1.2:55345605-55345624 | MS.gene32066:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr1.2:55345663-55345682 | MS.gene32066:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr1.2:55345264-55345283 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr1.2:55346640-55346659 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr1.2:55346899-55346918 | MS.gene32066:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr1.2:55347251-55347270 | None:intergenic | 45.0% | |
CTCAAGTAGCACAAATGCTC+TGG | - | chr1.2:55345426-55345445 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | + | chr1.2:55347622-55347641 | MS.gene32066:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr1.2:55345306-55345325 | MS.gene32066:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr1.2:55345602-55345621 | MS.gene32066:CDS | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | + | chr1.2:55346840-55346859 | MS.gene32066:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr1.2:55347149-55347168 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr1.2:55347231-55347250 | MS.gene32066:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr1.2:55345704-55345723 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr1.2:55347521-55347540 | MS.gene32066:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr1.2:55345315-55345334 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr1.2:55347424-55347443 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr1.2:55346703-55346722 | MS.gene32066:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr1.2:55346686-55346705 | MS.gene32066:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr1.2:55345318-55345337 | MS.gene32066:CDS | 45.0% |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr1.2:55345726-55345745 | MS.gene32066:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr1.2:55346407-55346426 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr1.2:55346403-55346422 | MS.gene32066:CDS | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr1.2:55347186-55347205 | MS.gene32066:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr1.2:55346904-55346923 | None:intergenic | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | + | chr1.2:55347621-55347640 | MS.gene32066:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr1.2:55346635-55346654 | MS.gene32066:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr1.2:55347187-55347206 | MS.gene32066:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr1.2:55346472-55346491 | MS.gene32066:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr1.2:55347473-55347492 | MS.gene32066:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr1.2:55347514-55347533 | MS.gene32066:CDS | 50.0% | |
TGGGTGATCCTATCTTGCCT+TGG | + | chr1.2:55346007-55346026 | MS.gene32066:intron | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr1.2:55346471-55346490 | MS.gene32066:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr1.2:55347636-55347655 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr1.2:55345528-55345547 | MS.gene32066:CDS | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr1.2:55346420-55346439 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr1.2:55347513-55347532 | MS.gene32066:CDS | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr1.2:55346905-55346924 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr1.2:55347527-55347546 | MS.gene32066:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr1.2:55345609-55345628 | MS.gene32066:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr1.2:55345531-55345550 | MS.gene32066:CDS | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr1.2:55347476-55347495 | MS.gene32066:CDS | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr1.2:55345536-55345555 | MS.gene32066:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 55344952 | 55348306 | 55344952 | ID=MS.gene32066 |
chr1.2 | mRNA | 55344952 | 55348306 | 55344952 | ID=MS.gene32066.t1;Parent=MS.gene32066 |
chr1.2 | exon | 55344952 | 55345834 | 55344952 | ID=MS.gene32066.t1.exon1;Parent=MS.gene32066.t1 |
chr1.2 | CDS | 55344952 | 55345834 | 55344952 | ID=cds.MS.gene32066.t1;Parent=MS.gene32066.t1 |
chr1.2 | exon | 55346269 | 55347702 | 55346269 | ID=MS.gene32066.t1.exon2;Parent=MS.gene32066.t1 |
chr1.2 | CDS | 55346269 | 55347702 | 55346269 | ID=cds.MS.gene32066.t1;Parent=MS.gene32066.t1 |
chr1.2 | exon | 55348287 | 55348306 | 55348287 | ID=MS.gene32066.t1.exon3;Parent=MS.gene32066.t1 |
chr1.2 | CDS | 55348287 | 55348306 | 55348287 | ID=cds.MS.gene32066.t1;Parent=MS.gene32066.t1 |
Gene Sequence |
Protein sequence |