Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32068.t1 | XP_003590676.1 | 92.6 | 325 | 24 | 0 | 1 | 325 | 1 | 325 | 4.60E-168 | 600.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32068.t1 | Q8S3D5 | 36.9 | 130 | 80 | 1 | 190 | 317 | 136 | 265 | 1.7e-14 | 81.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32068.t1 | G7IEF8 | 92.6 | 325 | 24 | 0 | 1 | 325 | 1 | 325 | 3.3e-168 | 600.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene32068.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32068.t1 | MTR_1g072530 | 92.615 | 325 | 24 | 0 | 1 | 325 | 1 | 325 | 0.0 | 628 |
MS.gene32068.t1 | MTR_1g072530 | 91.749 | 303 | 25 | 0 | 1 | 303 | 1 | 303 | 0.0 | 583 |
MS.gene32068.t1 | MTR_4g131160 | 36.486 | 148 | 74 | 3 | 190 | 317 | 202 | 349 | 3.12e-18 | 85.1 |
MS.gene32068.t1 | MTR_4g131160 | 36.486 | 148 | 74 | 3 | 190 | 317 | 205 | 352 | 3.60e-18 | 84.7 |
MS.gene32068.t1 | MTR_1g080890 | 34.307 | 137 | 78 | 1 | 190 | 314 | 199 | 335 | 4.25e-16 | 78.6 |
MS.gene32068.t1 | MTR_1g070870 | 34.286 | 140 | 80 | 1 | 190 | 317 | 129 | 268 | 1.01e-11 | 65.1 |
MS.gene32068.t1 | MTR_1g070870 | 34.286 | 140 | 80 | 1 | 190 | 317 | 126 | 265 | 1.09e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32068.t1 | AT5G64980 | 43.902 | 123 | 67 | 2 | 191 | 311 | 218 | 340 | 3.36e-22 | 95.9 |
MS.gene32068.t1 | AT5G64980 | 43.902 | 123 | 67 | 2 | 191 | 311 | 218 | 340 | 3.36e-22 | 95.9 |
MS.gene32068.t1 | AT4G30980 | 36.923 | 130 | 80 | 1 | 190 | 317 | 136 | 265 | 1.26e-18 | 85.1 |
MS.gene32068.t1 | AT4G30980 | 36.923 | 130 | 80 | 1 | 190 | 317 | 184 | 313 | 1.80e-18 | 85.5 |
MS.gene32068.t1 | AT2G24260 | 34.132 | 167 | 83 | 5 | 170 | 317 | 23 | 181 | 2.78e-18 | 83.2 |
MS.gene32068.t1 | AT2G24260 | 34.731 | 167 | 82 | 5 | 170 | 317 | 126 | 284 | 1.40e-17 | 82.8 |
MS.gene32068.t1 | AT5G58010 | 33.784 | 148 | 74 | 4 | 190 | 315 | 105 | 250 | 6.22e-15 | 74.3 |
MS.gene32068.t1 | AT1G03040 | 30.457 | 197 | 117 | 4 | 133 | 311 | 79 | 273 | 3.28e-13 | 69.3 |
MS.gene32068.t1 | AT1G03040 | 36.434 | 129 | 75 | 1 | 190 | 311 | 150 | 278 | 1.31e-12 | 67.8 |
MS.gene32068.t1 | AT4G02590 | 34.559 | 136 | 75 | 1 | 190 | 311 | 152 | 287 | 1.34e-11 | 64.7 |
MS.gene32068.t1 | AT4G02590 | 34.559 | 136 | 75 | 1 | 190 | 311 | 152 | 287 | 1.34e-11 | 64.7 |
MS.gene32068.t1 | AT4G02590 | 34.559 | 136 | 75 | 1 | 190 | 311 | 89 | 224 | 1.56e-11 | 63.9 |
Find 55 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATCCTGGAAAAGCTGATTT+TGG | 0.197185 | 1.2:+55364430 | MS.gene32068:CDS |
GTGTAGCTGCCTCCTGATTT+TGG | 0.209571 | 1.2:-55365387 | None:intergenic |
GATTCTTCAAGTCATGATTT+TGG | 0.215491 | 1.2:+55364466 | MS.gene32068:CDS |
TGCTTCACAATTTGATCATA+TGG | 0.268319 | 1.2:+55365332 | MS.gene32068:CDS |
ATGTTATATTTACAGGGTTA+TGG | 0.274550 | 1.2:+55366472 | MS.gene32068:intron |
TTACTTCCAATTCCAAAATC+AGG | 0.313389 | 1.2:+55365375 | MS.gene32068:CDS |
TGAGCCTCTTGAAGAGATAA+TGG | 0.328914 | 1.2:+55366522 | MS.gene32068:CDS |
TGTTATATTTACAGGGTTAT+GGG | 0.330987 | 1.2:+55366473 | MS.gene32068:intron |
TGTTCTGCTGCCTATTGCTT+TGG | 0.355110 | 1.2:+55366603 | MS.gene32068:CDS |
TCAGTTGTTGTAGTAGTGTT+TGG | 0.377494 | 1.2:-55364346 | None:intergenic |
GAGCCTCTTGAAGAGATAAT+GGG | 0.382191 | 1.2:+55366523 | MS.gene32068:CDS |
TACTACCAAGAGTGTGATAA+TGG | 0.397730 | 1.2:-55364390 | None:intergenic |
ACAACTGAGTATAATATGAT+TGG | 0.400574 | 1.2:+55364361 | MS.gene32068:CDS |
TTGCTTATCTCCAACTGAAT+CGG | 0.400905 | 1.2:-55365307 | None:intergenic |
TTTGGAATTGGAAGTAAAGA+AGG | 0.407492 | 1.2:-55365369 | None:intergenic |
GGTTCAACCATTGCATAGCT+TGG | 0.429150 | 1.2:-55366639 | None:intergenic |
TGCTTATCTCCAACTGAATC+GGG | 0.432394 | 1.2:-55365306 | None:intergenic |
GCTTCACAATTTGATCATAT+GGG | 0.439933 | 1.2:+55365333 | MS.gene32068:CDS |
GGGTTATGGGCATTATATAA+AGG | 0.442119 | 1.2:+55366486 | MS.gene32068:intron |
AGTTCATCAACCAAAGCAAT+AGG | 0.445410 | 1.2:-55366613 | None:intergenic |
GCAATTCATGTAAAGCTTTG+AGG | 0.446403 | 1.2:-55365648 | None:intergenic |
TCCCACTTCTTCCAAAGTGT+TGG | 0.449123 | 1.2:-55364249 | None:intergenic |
ATTAACTAACCTCAGTATAG+TGG | 0.456570 | 1.2:-55364686 | None:intergenic |
GTTAGCTAGCCTAGCTAGCT+TGG | 0.456823 | 1.2:-55366660 | None:intergenic |
GAAGCTCATATATTTGAAAC+CGG | 0.467992 | 1.2:+55364648 | MS.gene32068:CDS |
CAAATTCAAAACCAACACTT+TGG | 0.479840 | 1.2:+55364238 | MS.gene32068:CDS |
GGGTAGTCAAGCTTACATAT+TGG | 0.487201 | 1.2:+55365838 | MS.gene32068:intron |
AACCAACACTTTGGAAGAAG+TGG | 0.489754 | 1.2:+55364247 | MS.gene32068:CDS |
ATGGTTGAACCAAGCTAGCT+AGG | 0.499706 | 1.2:+55366651 | MS.gene32068:CDS |
CAACTGAGTATAATATGATT+GGG | 0.500571 | 1.2:+55364362 | MS.gene32068:CDS |
AGCAGCAGTTTCAATGATCC+TGG | 0.501372 | 1.2:+55364415 | MS.gene32068:CDS |
TTCCCCATTATCTCTTCAAG+AGG | 0.517037 | 1.2:-55366526 | None:intergenic |
CAACTTTCATATGAAAATGA+AGG | 0.525784 | 1.2:+55364184 | MS.gene32068:CDS |
AAACGACAGATTACCACATC+GGG | 0.526123 | 1.2:-55365679 | None:intergenic |
AATAGCCATTATCACACTCT+TGG | 0.527667 | 1.2:+55364385 | MS.gene32068:CDS |
GATGTTCCTCAGAAACATCA+TGG | 0.529826 | 1.2:-55364216 | None:intergenic |
TTGGAGAAATGATGAAGGAG+AGG | 0.544579 | 1.2:+55364623 | MS.gene32068:CDS |
CTCTTTGAATATAGCAACGC+AGG | 0.548222 | 1.2:+55365608 | MS.gene32068:intron |
TTGGAAGAAGTGGGATAGAG+TGG | 0.574092 | 1.2:+55364257 | MS.gene32068:CDS |
ATACTTGCAGATTCAAGTGA+AGG | 0.584258 | 1.2:+55365883 | MS.gene32068:CDS |
TGTTATAGGGTCATGCAACA+TGG | 0.586068 | 1.2:+55365280 | MS.gene32068:intron |
GTTCCTTTGCAGGAACTAAG+TGG | 0.591768 | 1.2:+55366043 | MS.gene32068:intron |
ACATGGACACCCGATTCAGT+TGG | 0.592687 | 1.2:+55365297 | MS.gene32068:CDS |
ACCAACACTTTGGAAGAAGT+GGG | 0.607841 | 1.2:+55364248 | MS.gene32068:CDS |
CTTCCAATTCCAAAATCAGG+AGG | 0.615927 | 1.2:+55365378 | MS.gene32068:CDS |
AGTGTTTGGAAGATAGCATG+AGG | 0.616860 | 1.2:-55364332 | None:intergenic |
AAGTAGCCATGATGTTTCTG+AGG | 0.620893 | 1.2:+55364210 | MS.gene32068:CDS |
TAAACGACAGATTACCACAT+CGG | 0.631690 | 1.2:-55365680 | None:intergenic |
AGCCTCTTGAAGAGATAATG+GGG | 0.633642 | 1.2:+55366524 | MS.gene32068:CDS |
TGTACCTCATGGAAAACTAG+TGG | 0.648110 | 1.2:-55366097 | None:intergenic |
CAGATTACCACATCGGGAGT+CGG | 0.648315 | 1.2:-55365673 | None:intergenic |
AACTGAACCAAGCTATGCAA+TGG | 0.660513 | 1.2:+55366632 | MS.gene32068:CDS |
TGTCAGCTACTTGAAAACAA+AGG | 0.685270 | 1.2:+55366577 | MS.gene32068:CDS |
TCAAAATCTCCACTATACTG+AGG | 0.696504 | 1.2:+55364677 | MS.gene32068:CDS |
ATTGCTGCCGACTCCCGATG+TGG | 0.723073 | 1.2:+55365666 | MS.gene32068:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTGTAATAATTTTGTTATA+GGG | + | chr1.2:55365267-55365286 | MS.gene32068:intron | 10.0% |
!!! | TATTGTAATAATTTTGTTAT+AGG | + | chr1.2:55365266-55365285 | MS.gene32068:intron | 10.0% |
!!! | TTTTCATAAGTTATATATTA+TGG | + | chr1.2:55364893-55364912 | MS.gene32068:intron | 10.0% |
!! | AATAAGCTGAAAAAAATATA+CGG | + | chr1.2:55365065-55365084 | MS.gene32068:intron | 15.0% |
!! | AATAAGCTGAAAAAAATATA+TGG | + | chr1.2:55365065-55365084 | MS.gene32068:intron | 15.0% |
!! | ATATATGAGATACTTAAATT+TGG | - | chr1.2:55365770-55365789 | None:intergenic | 15.0% |
!!! | AAAAAAATTTAGGATTGAAA+AGG | - | chr1.2:55365911-55365930 | None:intergenic | 15.0% |
!!! | AATCCTAAATTTTTTTTGAA+TGG | + | chr1.2:55365915-55365934 | MS.gene32068:intron | 15.0% |
!!! | AGTTTTTTTTCTATTTTATC+CGG | + | chr1.2:55365965-55365984 | MS.gene32068:intron | 15.0% |
!!! | ATTCTATTATTTTAAGCTTA+AGG | - | chr1.2:55366297-55366316 | None:intergenic | 15.0% |
!!! | ATTCTGAAATTTATGATTAA+TGG | + | chr1.2:55364785-55364804 | MS.gene32068:intron | 15.0% |
!!! | ATTTAAGTAGCTAATTTTTT+TGG | + | chr1.2:55365742-55365761 | MS.gene32068:intron | 15.0% |
!!! | TTTAAGTAGCTAATTTTTTT+GGG | + | chr1.2:55365743-55365762 | MS.gene32068:intron | 15.0% |
!!! | TTTTGTATGTTATATTTACA+GGG | + | chr1.2:55366466-55366485 | MS.gene32068:intron | 15.0% |
!! | AAATAAGCTGAATAAACTTA+TGG | + | chr1.2:55364996-55365015 | MS.gene32068:intron | 20.0% |
!! | ATCAAAATTCAGTTCATTAA+AGG | - | chr1.2:55365813-55365832 | None:intergenic | 20.0% |
!! | TATCTCTGATAAAATCATAA+GGG | + | chr1.2:55365466-55365485 | MS.gene32068:intron | 20.0% |
!! | TTGCCATTCAAAAAAAATTT+AGG | - | chr1.2:55365921-55365940 | None:intergenic | 20.0% |
!!! | GATTTAACATTAGTTTTCAA+AGG | + | chr1.2:55365704-55365723 | MS.gene32068:intron | 20.0% |
!!! | GTTTTGTATGTTATATTTAC+AGG | + | chr1.2:55366465-55366484 | MS.gene32068:intron | 20.0% |
!!! | GTTTTTTTTCTATTTTATCC+GGG | + | chr1.2:55365966-55365985 | MS.gene32068:intron | 20.0% |
!!! | TATTGAACATAGTTATTTTG+AGG | - | chr1.2:55364301-55364320 | None:intergenic | 20.0% |
! | AATTATTATGGAGCAGAATT+TGG | - | chr1.2:55366167-55366186 | None:intergenic | 25.0% |
! | ACAACTGAGTATAATATGAT+TGG | + | chr1.2:55364361-55364380 | MS.gene32068:CDS | 25.0% |
! | ACACTGTAAGTTATGTTTAT+AGG | - | chr1.2:55365246-55365265 | None:intergenic | 25.0% |
! | ACTCAAGCAAGAAATTATTA+TGG | - | chr1.2:55366179-55366198 | None:intergenic | 25.0% |
! | ATGTTATATTTACAGGGTTA+TGG | + | chr1.2:55366472-55366491 | MS.gene32068:intron | 25.0% |
! | CAACTGAGTATAATATGATT+GGG | + | chr1.2:55364362-55364381 | MS.gene32068:CDS | 25.0% |
! | CAACTTTCATATGAAAATGA+AGG | + | chr1.2:55364184-55364203 | MS.gene32068:CDS | 25.0% |
! | CTATCTCTGATAAAATCATA+AGG | + | chr1.2:55365465-55365484 | MS.gene32068:intron | 25.0% |
! | GCAAAATTGTGTTAATGAAT+TGG | - | chr1.2:55365571-55365590 | None:intergenic | 25.0% |
! | TCACAGTAATGCAATATATA+AGG | - | chr1.2:55366130-55366149 | None:intergenic | 25.0% |
! | TGTTATATTTACAGGGTTAT+GGG | + | chr1.2:55366473-55366492 | MS.gene32068:intron | 25.0% |
!! | TAACTTGTATTTACATGCAA+CGG | - | chr1.2:55366263-55366282 | None:intergenic | 25.0% |
!! | TGCTATATTCAAAGAGTATA+CGG | - | chr1.2:55365604-55365623 | None:intergenic | 25.0% |
!!! | ATGTTTTGTTTGTTTATGTG+AGG | + | chr1.2:55364549-55364568 | MS.gene32068:intron | 25.0% |
!!! | TAGTTATTTTGAGGTAGTTT+TGG | - | chr1.2:55364292-55364311 | None:intergenic | 25.0% |
!!! | TCATTTTTTGTCTTTTGAAC+CGG | + | chr1.2:55366386-55366405 | MS.gene32068:intron | 25.0% |
AATCTATCTTGAAGAGCTTA+TGG | + | chr1.2:55364973-55364992 | MS.gene32068:intron | 30.0% | |
AGAGCTTATGAAAACAGTTT+AGG | - | chr1.2:55365028-55365047 | None:intergenic | 30.0% | |
AGGAAGGTAAAGTTAATGAA+TGG | + | chr1.2:55364493-55364512 | MS.gene32068:intron | 30.0% | |
ATTAACTAACCTCAGTATAG+TGG | - | chr1.2:55364689-55364708 | None:intergenic | 30.0% | |
CAAATTCAAAACCAACACTT+TGG | + | chr1.2:55364238-55364257 | MS.gene32068:CDS | 30.0% | |
GCTTCACAATTTGATCATAT+GGG | + | chr1.2:55365333-55365352 | MS.gene32068:CDS | 30.0% | |
TATGGAAACGTGAAACTATT+TGG | - | chr1.2:55365188-55365207 | None:intergenic | 30.0% | |
TGCTTCACAATTTGATCATA+TGG | + | chr1.2:55365332-55365351 | MS.gene32068:CDS | 30.0% | |
TTACTTCCAATTCCAAAATC+AGG | + | chr1.2:55365375-55365394 | MS.gene32068:CDS | 30.0% | |
TTGTTATCTGTACAGTTCAT+AGG | + | chr1.2:55366220-55366239 | MS.gene32068:intron | 30.0% | |
! | ATACTGAGGTTAGTTAATTG+AGG | + | chr1.2:55364691-55364710 | MS.gene32068:intron | 30.0% |
! | GAAGCTCATATATTTGAAAC+CGG | + | chr1.2:55364648-55364667 | MS.gene32068:CDS | 30.0% |
! | GATTCTTCAAGTCATGATTT+TGG | + | chr1.2:55364466-55364485 | MS.gene32068:CDS | 30.0% |
! | GTATATCTGCATTTTGAATG+TGG | - | chr1.2:55365492-55365511 | None:intergenic | 30.0% |
! | TATTCAAAGAGTATACGGTA+AGG | - | chr1.2:55365599-55365618 | None:intergenic | 30.0% |
! | TTTGGAATTGGAAGTAAAGA+AGG | - | chr1.2:55365372-55365391 | None:intergenic | 30.0% |
!!! | CATTTTTTGTCTTTTGAACC+GGG | + | chr1.2:55366387-55366406 | MS.gene32068:intron | 30.0% |
!!! | GAACTGAATTTTGATTTGCA+GGG | + | chr1.2:55365818-55365837 | MS.gene32068:intron | 30.0% |
!!! | TGAACTGAATTTTGATTTGC+AGG | + | chr1.2:55365817-55365836 | MS.gene32068:intron | 30.0% |
AAAGAAAGTTGTTCCTTTGC+AGG | + | chr1.2:55366033-55366052 | MS.gene32068:intron | 35.0% | |
AAGCTCTCTTCAAGAGTTTA+TGG | + | chr1.2:55365041-55365060 | MS.gene32068:intron | 35.0% | |
AATAGCCATTATCACACTCT+TGG | + | chr1.2:55364385-55364404 | MS.gene32068:CDS | 35.0% | |
AGTTCATCAACCAAAGCAAT+AGG | - | chr1.2:55366616-55366635 | None:intergenic | 35.0% | |
ATACTTGCAGATTCAAGTGA+AGG | + | chr1.2:55365883-55365902 | MS.gene32068:CDS | 35.0% | |
GCAATTCATGTAAAGCTTTG+AGG | - | chr1.2:55365651-55365670 | None:intergenic | 35.0% | |
GGGTTATGGGCATTATATAA+AGG | + | chr1.2:55366486-55366505 | MS.gene32068:intron | 35.0% | |
TAAACGACAGATTACCACAT+CGG | - | chr1.2:55365683-55365702 | None:intergenic | 35.0% | |
TCAAAATCTCCACTATACTG+AGG | + | chr1.2:55364677-55364696 | MS.gene32068:CDS | 35.0% | |
TCAGTTGTTGTAGTAGTGTT+TGG | - | chr1.2:55364349-55364368 | None:intergenic | 35.0% | |
TGTCAGCTACTTGAAAACAA+AGG | + | chr1.2:55366577-55366596 | MS.gene32068:CDS | 35.0% | |
TTAAGTTAGAACAACAAGCC+CGG | - | chr1.2:55366408-55366427 | None:intergenic | 35.0% | |
TTGCTTATCTCCAACTGAAT+CGG | - | chr1.2:55365310-55365329 | None:intergenic | 35.0% | |
! | AAACCAAAATCAGCTTTTCC+AGG | - | chr1.2:55364436-55364455 | None:intergenic | 35.0% |
! | AGTTGACAAGAGCATAGTAT+TGG | - | chr1.2:55365532-55365551 | None:intergenic | 35.0% |
! | CACGTGTCTTTTACTAAAGA+CGG | - | chr1.2:55366361-55366380 | None:intergenic | 35.0% |
! | GAGAAAACGTTTGACTTACA+CGG | - | chr1.2:55365446-55365465 | None:intergenic | 35.0% |
! | TACTACCAAGAGTGTGATAA+TGG | - | chr1.2:55364393-55364412 | None:intergenic | 35.0% |
!!! | TATACCACTAGTTTTCCATG+AGG | + | chr1.2:55366093-55366112 | MS.gene32068:CDS | 35.0% |
!!! | TGTTTTGTTTTCAGCGTGTA+GGG | + | chr1.2:55364598-55364617 | MS.gene32068:intron | 35.0% |
AAACGACAGATTACCACATC+GGG | - | chr1.2:55365682-55365701 | None:intergenic | 40.0% | |
AACTGAACCAAGCTATGCAA+TGG | + | chr1.2:55366632-55366651 | MS.gene32068:CDS | 40.0% | |
AAGGAAAGATGTGTACCTCA+TGG | - | chr1.2:55366111-55366130 | None:intergenic | 40.0% | |
AGCCTCTTGAAGAGATAATG+GGG | + | chr1.2:55366524-55366543 | MS.gene32068:CDS | 40.0% | |
AGTGTTTGGAAGATAGCATG+AGG | - | chr1.2:55364335-55364354 | None:intergenic | 40.0% | |
CTCTTTGAATATAGCAACGC+AGG | + | chr1.2:55365608-55365627 | MS.gene32068:intron | 40.0% | |
CTTCCAATTCCAAAATCAGG+AGG | + | chr1.2:55365378-55365397 | MS.gene32068:CDS | 40.0% | |
GAGCCTCTTGAAGAGATAAT+GGG | + | chr1.2:55366523-55366542 | MS.gene32068:CDS | 40.0% | |
GATGTTCCTCAGAAACATCA+TGG | - | chr1.2:55364219-55364238 | None:intergenic | 40.0% | |
GCATAGTGACATAACGCATA+TGG | - | chr1.2:55365206-55365225 | None:intergenic | 40.0% | |
GGGTAGTCAAGCTTACATAT+TGG | + | chr1.2:55365838-55365857 | MS.gene32068:intron | 40.0% | |
TCGATTGTGCCTACATCTTA+CGG | - | chr1.2:55366338-55366357 | None:intergenic | 40.0% | |
TGAGCCTCTTGAAGAGATAA+TGG | + | chr1.2:55366522-55366541 | MS.gene32068:CDS | 40.0% | |
TGCTTATCTCCAACTGAATC+GGG | - | chr1.2:55365309-55365328 | None:intergenic | 40.0% | |
TGTACCTCATGGAAAACTAG+TGG | - | chr1.2:55366100-55366119 | None:intergenic | 40.0% | |
TGTTATAGGGTCATGCAACA+TGG | + | chr1.2:55365280-55365299 | MS.gene32068:intron | 40.0% | |
TTCCCCATTATCTCTTCAAG+AGG | - | chr1.2:55366529-55366548 | None:intergenic | 40.0% | |
TTGATCACAACGTTCAAACC+CGG | - | chr1.2:55365987-55366006 | None:intergenic | 40.0% | |
TTGGAGAAATGATGAAGGAG+AGG | + | chr1.2:55364623-55364642 | MS.gene32068:CDS | 40.0% | |
! | AACCAACACTTTGGAAGAAG+TGG | + | chr1.2:55364247-55364266 | MS.gene32068:CDS | 40.0% |
! | AAGTAGCCATGATGTTTCTG+AGG | + | chr1.2:55364210-55364229 | MS.gene32068:CDS | 40.0% |
! | ACCAACACTTTGGAAGAAGT+GGG | + | chr1.2:55364248-55364267 | MS.gene32068:CDS | 40.0% |
!! | GATCCTGGAAAAGCTGATTT+TGG | + | chr1.2:55364430-55364449 | MS.gene32068:CDS | 40.0% |
!!! | CAAGTCATGATTTTGGTGTC+AGG | + | chr1.2:55364473-55364492 | MS.gene32068:CDS | 40.0% |
!!! | GGGTTTTGGAGAAATGATGA+AGG | + | chr1.2:55364618-55364637 | MS.gene32068:CDS | 40.0% |
!!! | GTGGAGATTTTGACTACTTC+CGG | - | chr1.2:55364670-55364689 | None:intergenic | 40.0% |
!!! | GTGTTTTGTTTTCAGCGTGT+AGG | + | chr1.2:55364597-55364616 | MS.gene32068:intron | 40.0% |
!!! | TCATGATTTTGGTGTCAGGA+AGG | + | chr1.2:55364477-55364496 | MS.gene32068:CDS | 40.0% |
AGCAGCAGTTTCAATGATCC+TGG | + | chr1.2:55364415-55364434 | MS.gene32068:CDS | 45.0% | |
CTTCCACTTAGTTCCTGCAA+AGG | - | chr1.2:55366049-55366068 | None:intergenic | 45.0% | |
GGTTCAACCATTGCATAGCT+TGG | - | chr1.2:55366642-55366661 | None:intergenic | 45.0% | |
GTTCCTTTGCAGGAACTAAG+TGG | + | chr1.2:55366043-55366062 | MS.gene32068:intron | 45.0% | |
TCCCACTTCTTCCAAAGTGT+TGG | - | chr1.2:55364252-55364271 | None:intergenic | 45.0% | |
TGTTCTGCTGCCTATTGCTT+TGG | + | chr1.2:55366603-55366622 | MS.gene32068:CDS | 45.0% | |
TTGGAAGAAGTGGGATAGAG+TGG | + | chr1.2:55364257-55364276 | MS.gene32068:CDS | 45.0% | |
! | GTTTTCAGCGTGTAGGGTTT+TGG | + | chr1.2:55364604-55364623 | MS.gene32068:intron | 45.0% |
!!! | CTGCCTCCTGATTTTGGAAT+TGG | - | chr1.2:55365384-55365403 | None:intergenic | 45.0% |
!!! | TTTTTTAACTTATTTTAATA+AGG | - | chr1.2:55364922-55364941 | None:intergenic | 5.0% |
ACATGGACACCCGATTCAGT+TGG | + | chr1.2:55365297-55365316 | MS.gene32068:CDS | 50.0% | |
ATCTTACGGCAGAGTGGCTA+TGG | - | chr1.2:55366324-55366343 | None:intergenic | 50.0% | |
CAGATTACCACATCGGGAGT+CGG | - | chr1.2:55365676-55365695 | None:intergenic | 50.0% | |
! | GTGTAGCTGCCTCCTGATTT+TGG | - | chr1.2:55365390-55365409 | None:intergenic | 50.0% |
GCCACTCTGCCGTAAGATGT+AGG | + | chr1.2:55366326-55366345 | MS.gene32068:intron | 55.0% | |
GCCTACATCTTACGGCAGAG+TGG | - | chr1.2:55366330-55366349 | None:intergenic | 55.0% | |
!! | ATTGCTGCCGACTCCCGATG+TGG | + | chr1.2:55365666-55365685 | MS.gene32068:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 55364145 | 55366672 | 55364145 | ID=MS.gene32068 |
chr1.2 | mRNA | 55364145 | 55366672 | 55364145 | ID=MS.gene32068.t1;Parent=MS.gene32068 |
chr1.2 | exon | 55364145 | 55364498 | 55364145 | ID=MS.gene32068.t1.exon1;Parent=MS.gene32068.t1 |
chr1.2 | CDS | 55364145 | 55364498 | 55364145 | ID=cds.MS.gene32068.t1;Parent=MS.gene32068.t1 |
chr1.2 | exon | 55364612 | 55364698 | 55364612 | ID=MS.gene32068.t1.exon2;Parent=MS.gene32068.t1 |
chr1.2 | CDS | 55364612 | 55364698 | 55364612 | ID=cds.MS.gene32068.t1;Parent=MS.gene32068.t1 |
chr1.2 | exon | 55365288 | 55365446 | 55365288 | ID=MS.gene32068.t1.exon3;Parent=MS.gene32068.t1 |
chr1.2 | CDS | 55365288 | 55365446 | 55365288 | ID=cds.MS.gene32068.t1;Parent=MS.gene32068.t1 |
chr1.2 | exon | 55365622 | 55365687 | 55365622 | ID=MS.gene32068.t1.exon4;Parent=MS.gene32068.t1 |
chr1.2 | CDS | 55365622 | 55365687 | 55365622 | ID=cds.MS.gene32068.t1;Parent=MS.gene32068.t1 |
chr1.2 | exon | 55365839 | 55365904 | 55365839 | ID=MS.gene32068.t1.exon5;Parent=MS.gene32068.t1 |
chr1.2 | CDS | 55365839 | 55365904 | 55365839 | ID=cds.MS.gene32068.t1;Parent=MS.gene32068.t1 |
chr1.2 | exon | 55366055 | 55366114 | 55366055 | ID=MS.gene32068.t1.exon6;Parent=MS.gene32068.t1 |
chr1.2 | CDS | 55366055 | 55366114 | 55366055 | ID=cds.MS.gene32068.t1;Parent=MS.gene32068.t1 |
chr1.2 | exon | 55366487 | 55366672 | 55366487 | ID=MS.gene32068.t1.exon7;Parent=MS.gene32068.t1 |
chr1.2 | CDS | 55366487 | 55366672 | 55366487 | ID=cds.MS.gene32068.t1;Parent=MS.gene32068.t1 |
Gene Sequence |
Protein sequence |