Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32082.t1 | AFK49659.1 | 99.3 | 146 | 1 | 0 | 1 | 146 | 1 | 146 | 1.50E-73 | 285.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32082.t1 | Q8VYK4 | 70.9 | 148 | 38 | 3 | 2 | 147 | 6 | 150 | 2.2e-49 | 196.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32082.t1 | I3TAW7 | 99.3 | 146 | 1 | 0 | 1 | 146 | 1 | 146 | 1.1e-73 | 285.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene32082.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32082.t1 | MTR_1g072790 | 97.315 | 149 | 2 | 1 | 1 | 147 | 1 | 149 | 7.08e-105 | 297 |
MS.gene32082.t1 | MTR_7g061270 | 79.104 | 134 | 21 | 4 | 11 | 141 | 12 | 141 | 4.63e-70 | 208 |
MS.gene32082.t1 | MTR_7g100650 | 81.102 | 127 | 18 | 3 | 11 | 135 | 12 | 134 | 8.93e-70 | 208 |
MS.gene32082.t1 | MTR_5g095740 | 67.424 | 132 | 35 | 2 | 1 | 130 | 1 | 126 | 2.10e-58 | 179 |
MS.gene32082.t1 | MTR_2g026710 | 66.667 | 135 | 35 | 2 | 9 | 143 | 3 | 127 | 2.34e-58 | 179 |
MS.gene32082.t1 | MTR_3g058980 | 68.800 | 125 | 37 | 1 | 1 | 125 | 1 | 123 | 4.32e-58 | 179 |
MS.gene32082.t1 | MTR_8g091720 | 71.818 | 110 | 23 | 1 | 17 | 118 | 8 | 117 | 1.10e-53 | 168 |
MS.gene32082.t1 | MTR_4g133938 | 76.768 | 99 | 21 | 1 | 22 | 118 | 10 | 108 | 1.21e-51 | 160 |
MS.gene32082.t1 | MTR_8g093920 | 74.725 | 91 | 23 | 0 | 28 | 118 | 39 | 129 | 1.70e-50 | 160 |
MS.gene32082.t1 | MTR_0392s0020 | 72.527 | 91 | 25 | 0 | 28 | 118 | 17 | 107 | 5.97e-49 | 154 |
MS.gene32082.t1 | MTR_1g088860 | 70.526 | 95 | 28 | 0 | 28 | 122 | 35 | 129 | 3.06e-48 | 154 |
MS.gene32082.t1 | MTR_4g119500 | 71.429 | 91 | 26 | 0 | 28 | 118 | 21 | 111 | 4.02e-48 | 151 |
MS.gene32082.t1 | MTR_4g133952 | 62.617 | 107 | 36 | 1 | 16 | 118 | 41 | 147 | 5.50e-46 | 150 |
MS.gene32082.t1 | MTR_1g039040 | 61.000 | 100 | 38 | 1 | 28 | 126 | 5 | 104 | 8.65e-44 | 142 |
MS.gene32082.t1 | MTR_1g083070 | 56.522 | 92 | 40 | 0 | 29 | 120 | 4 | 95 | 4.84e-37 | 123 |
MS.gene32082.t1 | MTR_1g029070 | 48.980 | 98 | 50 | 0 | 27 | 124 | 50 | 147 | 2.55e-30 | 107 |
MS.gene32082.t1 | MTR_5g095900 | 43.137 | 102 | 58 | 0 | 22 | 123 | 9 | 110 | 1.08e-23 | 91.3 |
MS.gene32082.t1 | MTR_2g056000 | 32.000 | 125 | 84 | 1 | 8 | 132 | 21 | 144 | 1.19e-20 | 83.6 |
MS.gene32082.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 34 | 109 | 7 | 82 | 1.05e-19 | 78.6 |
MS.gene32082.t1 | MTR_1g028480 | 62.963 | 54 | 20 | 0 | 64 | 117 | 24 | 77 | 1.40e-19 | 78.6 |
MS.gene32082.t1 | MTR_4g112380 | 33.333 | 102 | 68 | 0 | 30 | 131 | 12 | 113 | 7.93e-18 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32082.t1 | AT2G37060 | 70.946 | 148 | 38 | 3 | 2 | 147 | 6 | 150 | 9.14e-70 | 208 |
MS.gene32082.t1 | AT2G37060 | 70.946 | 148 | 38 | 3 | 2 | 147 | 6 | 150 | 9.14e-70 | 208 |
MS.gene32082.t1 | AT2G37060 | 70.946 | 148 | 38 | 3 | 2 | 147 | 6 | 150 | 9.14e-70 | 208 |
MS.gene32082.t1 | AT2G38880 | 72.917 | 144 | 28 | 3 | 1 | 143 | 1 | 134 | 9.48e-69 | 204 |
MS.gene32082.t1 | AT2G38880 | 70.667 | 150 | 31 | 4 | 1 | 147 | 1 | 140 | 3.27e-67 | 200 |
MS.gene32082.t1 | AT2G38880 | 71.918 | 146 | 28 | 4 | 1 | 143 | 1 | 136 | 1.11e-66 | 199 |
MS.gene32082.t1 | AT2G38880 | 71.918 | 146 | 28 | 4 | 1 | 143 | 1 | 136 | 1.11e-66 | 199 |
MS.gene32082.t1 | AT2G38880 | 71.918 | 146 | 28 | 4 | 1 | 143 | 1 | 136 | 1.11e-66 | 199 |
MS.gene32082.t1 | AT3G53340 | 75.188 | 133 | 26 | 3 | 17 | 147 | 19 | 146 | 9.10e-66 | 198 |
MS.gene32082.t1 | AT3G53340 | 75.188 | 133 | 26 | 3 | 17 | 147 | 19 | 146 | 9.10e-66 | 198 |
MS.gene32082.t1 | AT2G38880 | 62.130 | 169 | 28 | 4 | 1 | 143 | 1 | 159 | 9.66e-63 | 190 |
MS.gene32082.t1 | AT2G38880 | 62.130 | 169 | 28 | 4 | 1 | 143 | 1 | 159 | 9.66e-63 | 190 |
MS.gene32082.t1 | AT3G53340 | 82.407 | 108 | 17 | 1 | 17 | 124 | 19 | 124 | 2.04e-61 | 186 |
MS.gene32082.t1 | AT3G53340 | 82.407 | 108 | 17 | 1 | 17 | 124 | 19 | 124 | 2.04e-61 | 186 |
MS.gene32082.t1 | AT2G38880 | 76.471 | 119 | 18 | 2 | 1 | 118 | 1 | 110 | 1.37e-60 | 182 |
MS.gene32082.t1 | AT3G53340 | 85.294 | 102 | 13 | 1 | 17 | 118 | 19 | 118 | 2.06e-60 | 182 |
MS.gene32082.t1 | AT2G38880 | 77.119 | 118 | 19 | 2 | 1 | 118 | 1 | 110 | 5.33e-60 | 182 |
MS.gene32082.t1 | AT2G38880 | 77.119 | 118 | 19 | 2 | 1 | 118 | 1 | 110 | 5.33e-60 | 182 |
MS.gene32082.t1 | AT2G38880 | 77.119 | 118 | 19 | 2 | 1 | 118 | 1 | 110 | 5.33e-60 | 182 |
MS.gene32082.t1 | AT4G14540 | 72.881 | 118 | 24 | 2 | 1 | 118 | 1 | 110 | 1.86e-59 | 181 |
MS.gene32082.t1 | AT5G47640 | 74.359 | 117 | 24 | 2 | 28 | 144 | 26 | 136 | 6.15e-58 | 179 |
MS.gene32082.t1 | AT2G13570 | 65.289 | 121 | 33 | 2 | 9 | 120 | 7 | 127 | 1.60e-52 | 166 |
MS.gene32082.t1 | AT2G47810 | 62.617 | 107 | 40 | 0 | 24 | 130 | 46 | 152 | 2.66e-46 | 148 |
MS.gene32082.t1 | AT5G47670 | 61.538 | 104 | 40 | 0 | 28 | 131 | 28 | 131 | 1.67e-45 | 147 |
MS.gene32082.t1 | AT5G47670 | 61.538 | 104 | 40 | 0 | 28 | 131 | 57 | 160 | 4.32e-45 | 147 |
MS.gene32082.t1 | AT5G47670 | 61.538 | 104 | 40 | 0 | 28 | 131 | 57 | 160 | 4.32e-45 | 147 |
MS.gene32082.t1 | AT1G21970 | 54.783 | 115 | 51 | 1 | 26 | 139 | 56 | 170 | 1.12e-44 | 146 |
MS.gene32082.t1 | AT1G09030 | 54.545 | 99 | 45 | 0 | 29 | 127 | 3 | 101 | 6.03e-40 | 131 |
MS.gene32082.t1 | AT5G08190 | 40.000 | 105 | 57 | 2 | 30 | 130 | 12 | 114 | 7.29e-21 | 83.6 |
MS.gene32082.t1 | AT5G23090 | 37.736 | 106 | 60 | 2 | 30 | 131 | 12 | 115 | 8.53e-20 | 80.5 |
MS.gene32082.t1 | AT5G08190 | 39.623 | 106 | 57 | 3 | 30 | 130 | 12 | 115 | 4.33e-19 | 79.0 |
MS.gene32082.t1 | AT5G23090 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 3.25e-18 | 76.6 |
MS.gene32082.t1 | AT5G23090 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 3.25e-18 | 76.6 |
MS.gene32082.t1 | AT5G23090 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 3.25e-18 | 76.6 |
MS.gene32082.t1 | AT5G23090 | 42.029 | 69 | 38 | 1 | 46 | 114 | 15 | 81 | 9.02e-14 | 64.7 |
Find 31 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTCTTTCTCTTCTCTTTC+TGG | 0.035702 | 1.2:+55567661 | None:intergenic |
GAGAAGAGAAAGACCATTAA+TGG | 0.272230 | 1.2:-55567654 | MS.gene32082:CDS |
TAACAAATCATCTCCATTAA+TGG | 0.277036 | 1.2:+55567641 | None:intergenic |
TTATGGGCTATGGCTACTTT+AGG | 0.294228 | 1.2:-55567621 | MS.gene32082:CDS |
CATTAGCAGAATCATGAAAA+AGG | 0.328217 | 1.2:-55568224 | MS.gene32082:CDS |
TAATGGAGATGATTTGTTAT+GGG | 0.363879 | 1.2:-55567637 | MS.gene32082:CDS |
TTAATGGAGATGATTTGTTA+TGG | 0.386568 | 1.2:-55567638 | MS.gene32082:CDS |
CTTGCTAGGTACACCTTAAG+TGG | 0.428983 | 1.2:+55567579 | None:intergenic |
TCTCGTGGCTTTCTTCGCAT+TGG | 0.434390 | 1.2:+55568320 | None:intergenic |
AGATTATATAGAACCACTTA+AGG | 0.449087 | 1.2:-55567592 | MS.gene32082:CDS |
ATTCTGCTAATGTTAGCTAT+AGG | 0.459912 | 1.2:+55568235 | None:intergenic |
TGGCTTTCTTCGCATTGGTT+CGG | 0.462126 | 1.2:+55568325 | None:intergenic |
GTTAGAAACGGTGATGGATC+TGG | 0.482572 | 1.2:-55567219 | MS.gene32082:CDS |
AAAAGGCTTTACCTTCAAAT+GGG | 0.495925 | 1.2:-55568207 | MS.gene32082:CDS |
GATCAAGTTGGCGGTCCTCC+AGG | 0.499077 | 1.2:-55567189 | MS.gene32082:CDS |
AGATGATTTGTTATGGGCTA+TGG | 0.505790 | 1.2:-55567631 | MS.gene32082:CDS |
TCCTCCAGGTCAAAATGCTC+AGG | 0.507423 | 1.2:-55567175 | MS.gene32082:CDS |
TTGGTTCGGTGCATCTGCCA+TGG | 0.526473 | 1.2:+55568339 | None:intergenic |
TTACCTCTCTGTACCTTGCT+AGG | 0.541282 | 1.2:+55567565 | None:intergenic |
AGTAAAGGATCTGTTAGAAA+CGG | 0.549907 | 1.2:-55567231 | MS.gene32082:CDS |
TTCTGATAGGGTGATAGTAA+AGG | 0.555051 | 1.2:-55567246 | MS.gene32082:intron |
CACTTAAGGTGTACCTAGCA+AGG | 0.578437 | 1.2:-55567578 | MS.gene32082:CDS |
GGATCTGTTAGAAACGGTGA+TGG | 0.585242 | 1.2:-55567225 | MS.gene32082:CDS |
GGTAGACGAGATCAAGTTGG+CGG | 0.612930 | 1.2:-55567198 | MS.gene32082:CDS |
TCTGTTCACCACCACTCTCG+TGG | 0.616032 | 1.2:+55568305 | None:intergenic |
TCTGGTAGACGAGATCAAGT+TGG | 0.625609 | 1.2:-55567201 | MS.gene32082:CDS |
TGCGAAGAAAGCCACGAGAG+TGG | 0.627075 | 1.2:-55568316 | MS.gene32082:CDS |
GAAGAAAGCCACGAGAGTGG+TGG | 0.673522 | 1.2:-55568313 | MS.gene32082:CDS |
GGTGGTGAACAGAGTCCACG+TGG | 0.738315 | 1.2:-55568295 | MS.gene32082:CDS |
GAAGCAGAAGAAGAGCCACG+TGG | 0.770183 | 1.2:+55568280 | None:intergenic |
GTACCTAGCAAGGTACAGAG+AGG | 0.772033 | 1.2:-55567568 | MS.gene32082:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATAAAAATACTATGGTTT+TGG | + | chr1.2:55567410-55567429 | None:intergenic | 15.0% |
!!! | AATTTTGATAATGTTCTTTA+TGG | - | chr1.2:55568068-55568087 | MS.gene32082:intron | 15.0% |
!! | TTGCTAATTTATATGATGTT+TGG | - | chr1.2:55567738-55567757 | MS.gene32082:intron | 20.0% |
!!! | TTTTTTTTTATGCTCTCTTT+TGG | - | chr1.2:55567482-55567501 | MS.gene32082:intron | 20.0% |
! | AAACCAAGCATTAACTTAAA+TGG | + | chr1.2:55567986-55568005 | None:intergenic | 25.0% |
! | AACTAATACAATCAATCAGA+AGG | + | chr1.2:55568185-55568204 | None:intergenic | 25.0% |
! | ACTAATACAATCAATCAGAA+GGG | + | chr1.2:55568184-55568203 | None:intergenic | 25.0% |
! | AGATTATATAGAACCACTTA+AGG | - | chr1.2:55567915-55567934 | MS.gene32082:intron | 25.0% |
! | AGGAAGAAGGAAAAAAAAAA+CGG | + | chr1.2:55568110-55568129 | None:intergenic | 25.0% |
! | CTAATTTATATGATGTTTGG+TGG | - | chr1.2:55567741-55567760 | MS.gene32082:intron | 25.0% |
! | GTTGTGTGGAAAATAATTTA+GGG | - | chr1.2:55567589-55567608 | MS.gene32082:CDS | 25.0% |
! | TAACAAATCATCTCCATTAA+TGG | + | chr1.2:55567869-55567888 | None:intergenic | 25.0% |
! | TCAATTTATATGATGTTGTG+TGG | - | chr1.2:55567575-55567594 | MS.gene32082:CDS | 25.0% |
! | TGTTGTGTGGAAAATAATTT+AGG | - | chr1.2:55567588-55567607 | MS.gene32082:CDS | 25.0% |
!! | GTATTATAAATCGTGGTTTT+TGG | - | chr1.2:55567676-55567695 | MS.gene32082:CDS | 25.0% |
!! | TTTTGTAGTCTCTTTTAGAT+GGG | - | chr1.2:55567654-55567673 | MS.gene32082:CDS | 25.0% |
!! | TTTTTGTAGTCTCTTTTAGA+TGG | - | chr1.2:55567653-55567672 | MS.gene32082:CDS | 25.0% |
!!! | AAATACTATGGTTTTGGAAA+TGG | + | chr1.2:55567404-55567423 | None:intergenic | 25.0% |
!!! | AAGTTGAAGTTTTTAGCAAA+TGG | - | chr1.2:55567516-55567535 | MS.gene32082:intron | 25.0% |
!!! | AATACTATGGTTTTGGAAAT+GGG | + | chr1.2:55567403-55567422 | None:intergenic | 25.0% |
!!! | AGTTGAAGTTTTTAGCAAAT+GGG | - | chr1.2:55567517-55567536 | MS.gene32082:intron | 25.0% |
!!! | ATTTTGTTTGTTGTCTGAAT+TGG | - | chr1.2:55567782-55567801 | MS.gene32082:intron | 25.0% |
!!! | TAATGGAGATGATTTGTTAT+GGG | - | chr1.2:55567870-55567889 | MS.gene32082:intron | 25.0% |
!!! | TATTAGTTTGTTTTTTACGC+TGG | - | chr1.2:55568197-55568216 | MS.gene32082:CDS | 25.0% |
!!! | TTAATGGAGATGATTTGTTA+TGG | - | chr1.2:55567869-55567888 | MS.gene32082:intron | 25.0% |
!!! | TTTAAGTTAATGCTTGGTTT+TGG | - | chr1.2:55567986-55568005 | MS.gene32082:intron | 25.0% |
!!! | TTTTTTTTTTCCTTCTTCCT+TGG | - | chr1.2:55568110-55568129 | MS.gene32082:intron | 25.0% |
AAAAAGGCTTTACCTTCAAA+TGG | - | chr1.2:55567299-55567318 | MS.gene32082:intron | 30.0% | |
AAAAGGCTTTACCTTCAAAT+GGG | - | chr1.2:55567300-55567319 | MS.gene32082:intron | 30.0% | |
AGTAAAGGATCTGTTAGAAA+CGG | - | chr1.2:55568276-55568295 | MS.gene32082:CDS | 30.0% | |
ATTCTGCTAATGTTAGCTAT+AGG | + | chr1.2:55567275-55567294 | None:intergenic | 30.0% | |
CATTAGCAGAATCATGAAAA+AGG | - | chr1.2:55567283-55567302 | MS.gene32082:intron | 30.0% | |
TAGATGGGTATTATAAATCG+TGG | - | chr1.2:55567669-55567688 | MS.gene32082:CDS | 30.0% | |
! | TTGCCATTTAAGTTAATGCT+TGG | - | chr1.2:55567980-55567999 | MS.gene32082:intron | 30.0% |
! | TTTGTTGTCTGAATTGGAAA+TGG | - | chr1.2:55567788-55567807 | MS.gene32082:intron | 30.0% |
! | TTTTAGCAAATGGGGTATAT+TGG | - | chr1.2:55567526-55567545 | MS.gene32082:intron | 30.0% |
! | TTTTTATGCTCTCTTTTGGA+TGG | - | chr1.2:55567486-55567505 | MS.gene32082:intron | 30.0% |
!! | GAATTGGAAATGGTTGTTTT+TGG | - | chr1.2:55567798-55567817 | MS.gene32082:intron | 30.0% |
!!! | GTTGAAGTTTTTAGCAAATG+GGG | - | chr1.2:55567518-55567537 | MS.gene32082:intron | 30.0% |
AATACAATCAATCAGAAGGG+AGG | + | chr1.2:55568181-55568200 | None:intergenic | 35.0% | |
GAGAAGAGAAAGACCATTAA+TGG | - | chr1.2:55567853-55567872 | MS.gene32082:intron | 35.0% | |
TTCTGATAGGGTGATAGTAA+AGG | - | chr1.2:55568261-55568280 | MS.gene32082:CDS | 35.0% | |
! | TTCGCAATTTTCCCATTTGA+AGG | + | chr1.2:55567314-55567333 | None:intergenic | 35.0% |
!! | AGATGATTTGTTATGGGCTA+TGG | - | chr1.2:55567876-55567895 | MS.gene32082:intron | 35.0% |
!!! | AAATCGTGGTTTTTGGCAAT+TGG | - | chr1.2:55567683-55567702 | MS.gene32082:intron | 35.0% |
!!! | AATCGTGGTTTTTGGCAATT+GGG | - | chr1.2:55567684-55567703 | MS.gene32082:intron | 35.0% |
!!! | GTTGTTTTTGGTGGATTGTA+GGG | - | chr1.2:55567810-55567829 | MS.gene32082:intron | 35.0% |
!!! | TTGGAAATGGTTGTTTTTGG+TGG | - | chr1.2:55567801-55567820 | MS.gene32082:intron | 35.0% |
CGCAAATGTTAGCATTCCAT+TGG | + | chr1.2:55568232-55568251 | None:intergenic | 40.0% | |
TATCACCCTATCAGAAACCA+TGG | + | chr1.2:55568257-55568276 | None:intergenic | 40.0% | |
TCCAAAATCACCAAGGAAGA+AGG | + | chr1.2:55568123-55568142 | None:intergenic | 40.0% | |
TCGACATTCCAAAATCACCA+AGG | + | chr1.2:55568130-55568149 | None:intergenic | 40.0% | |
TCGACGGATATAACAGTTAG+AGG | - | chr1.2:55568146-55568165 | MS.gene32082:CDS | 40.0% | |
TGGTCTTTCTCTTCTCTTTC+TGG | + | chr1.2:55567849-55567868 | None:intergenic | 40.0% | |
! | TTATGGGCTATGGCTACTTT+AGG | - | chr1.2:55567886-55567905 | MS.gene32082:intron | 40.0% |
! | TTTTGGCAATTGGGGTGTAT+TGG | - | chr1.2:55567693-55567712 | MS.gene32082:intron | 40.0% |
!! | TCCTTCTTCCTTGGTGATTT+TGG | - | chr1.2:55568119-55568138 | MS.gene32082:intron | 40.0% |
!!! | ATCGTGGTTTTTGGCAATTG+GGG | - | chr1.2:55567685-55567704 | MS.gene32082:intron | 40.0% |
!!! | GGTTGTTTTTGGTGGATTGT+AGG | - | chr1.2:55567809-55567828 | MS.gene32082:intron | 40.0% |
!!! | TGGTGATTTTGGAATGTCGA+CGG | - | chr1.2:55568130-55568149 | MS.gene32082:intron | 40.0% |
ATGCTAACATTTGCGAGCCA+TGG | - | chr1.2:55568237-55568256 | MS.gene32082:CDS | 45.0% | |
CACTTAAGGTGTACCTAGCA+AGG | - | chr1.2:55567929-55567948 | MS.gene32082:intron | 45.0% | |
CTTGCTAGGTACACCTTAAG+TGG | + | chr1.2:55567931-55567950 | None:intergenic | 45.0% | |
GGATCTGTTAGAAACGGTGA+TGG | - | chr1.2:55568282-55568301 | MS.gene32082:CDS | 45.0% | |
TCTGGTAGACGAGATCAAGT+TGG | - | chr1.2:55568306-55568325 | MS.gene32082:CDS | 45.0% | |
TTACCTCTCTGTACCTTGCT+AGG | + | chr1.2:55567945-55567964 | None:intergenic | 45.0% | |
!! | GTTAGAAACGGTGATGGATC+TGG | - | chr1.2:55568288-55568307 | MS.gene32082:CDS | 45.0% |
!! | TGGCTTTCTTCGCATTGGTT+CGG | + | chr1.2:55567185-55567204 | None:intergenic | 45.0% |
!! | TAAAAAAAATAAAAATACTA+TGG | + | chr1.2:55567416-55567435 | None:intergenic | 5.0% |
ACGCTGGACTATCTTGCCAA+TGG | - | chr1.2:55568213-55568232 | MS.gene32082:CDS | 50.0% | |
GCGAGCCATGGTTTCTGATA+GGG | - | chr1.2:55568249-55568268 | MS.gene32082:CDS | 50.0% | |
GTACCTAGCAAGGTACAGAG+AGG | - | chr1.2:55567939-55567958 | MS.gene32082:intron | 50.0% | |
TCCTCCAGGTCAAAATGCTC+AGG | - | chr1.2:55568332-55568351 | MS.gene32082:CDS | 50.0% | |
TCTCGTGGCTTTCTTCGCAT+TGG | + | chr1.2:55567190-55567209 | None:intergenic | 50.0% | |
TGCGAGCCATGGTTTCTGAT+AGG | - | chr1.2:55568248-55568267 | MS.gene32082:CDS | 50.0% | |
!! | ACCTGAGCATTTTGACCTGG+AGG | + | chr1.2:55568336-55568355 | None:intergenic | 50.0% |
!! | CACACCTGAGCATTTTGACC+TGG | + | chr1.2:55568339-55568358 | None:intergenic | 50.0% |
!! | GGTAGACGAGATCAAGTTGG+CGG | - | chr1.2:55568309-55568328 | MS.gene32082:CDS | 50.0% |
GAAGAAAGCCACGAGAGTGG+TGG | - | chr1.2:55567194-55567213 | MS.gene32082:CDS | 55.0% | |
GAAGCAGAAGAAGAGCCACG+TGG | + | chr1.2:55567230-55567249 | None:intergenic | 55.0% | |
TCTGTTCACCACCACTCTCG+TGG | + | chr1.2:55567205-55567224 | None:intergenic | 55.0% | |
TGCGAAGAAAGCCACGAGAG+TGG | - | chr1.2:55567191-55567210 | MS.gene32082:CDS | 55.0% | |
GGTGGTGAACAGAGTCCACG+TGG | - | chr1.2:55567212-55567231 | MS.gene32082:CDS | 60.0% | |
!! | GATCAAGTTGGCGGTCCTCC+AGG | - | chr1.2:55568318-55568337 | MS.gene32082:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 55567170 | 55568359 | 55567170 | ID=MS.gene32082 |
chr1.2 | mRNA | 55567170 | 55568359 | 55567170 | ID=MS.gene32082.t1;Parent=MS.gene32082 |
chr1.2 | exon | 55568136 | 55568359 | 55568136 | ID=MS.gene32082.t1.exon1;Parent=MS.gene32082.t1 |
chr1.2 | CDS | 55568136 | 55568359 | 55568136 | ID=cds.MS.gene32082.t1;Parent=MS.gene32082.t1 |
chr1.2 | exon | 55567569 | 55567698 | 55567569 | ID=MS.gene32082.t1.exon2;Parent=MS.gene32082.t1 |
chr1.2 | CDS | 55567569 | 55567698 | 55567569 | ID=cds.MS.gene32082.t1;Parent=MS.gene32082.t1 |
chr1.2 | exon | 55567170 | 55567259 | 55567170 | ID=MS.gene32082.t1.exon3;Parent=MS.gene32082.t1 |
chr1.2 | CDS | 55567170 | 55567259 | 55567170 | ID=cds.MS.gene32082.t1;Parent=MS.gene32082.t1 |
Gene Sequence |
Protein sequence |