Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32107.t1 | RDX83430.1 | 79.9 | 706 | 119 | 12 | 1 | 701 | 1 | 688 | 1.00E-265 | 926 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32107.t1 | Q8N573 | 41.6 | 166 | 93 | 3 | 137 | 301 | 707 | 869 | 3.4e-23 | 111.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32107.t1 | A0A371FYW0 | 79.9 | 706 | 119 | 12 | 1 | 701 | 1 | 688 | 7.5e-266 | 926.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene32107.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32107.t1 | MTR_1g073350 | 99.012 | 405 | 3 | 1 | 300 | 704 | 11 | 414 | 0.0 | 815 |
MS.gene32107.t1 | MTR_1g073340 | 91.749 | 303 | 23 | 1 | 1 | 301 | 1 | 303 | 0.0 | 528 |
MS.gene32107.t1 | MTR_1g044785 | 72.881 | 236 | 54 | 4 | 470 | 704 | 4 | 230 | 7.06e-109 | 330 |
MS.gene32107.t1 | MTR_1g044690 | 55.914 | 279 | 105 | 3 | 27 | 301 | 22 | 286 | 8.60e-86 | 272 |
MS.gene32107.t1 | MTR_8g090235 | 56.471 | 170 | 74 | 0 | 138 | 307 | 166 | 335 | 9.40e-63 | 213 |
MS.gene32107.t1 | MTR_8g090235 | 54.802 | 177 | 79 | 1 | 125 | 301 | 154 | 329 | 6.03e-62 | 211 |
MS.gene32107.t1 | MTR_3g087230 | 51.829 | 164 | 79 | 0 | 138 | 301 | 182 | 345 | 2.78e-54 | 191 |
MS.gene32107.t1 | MTR_3g087230 | 51.829 | 164 | 79 | 0 | 138 | 301 | 181 | 344 | 3.22e-54 | 191 |
MS.gene32107.t1 | MTR_3g087230 | 51.471 | 136 | 66 | 0 | 138 | 273 | 181 | 316 | 1.68e-43 | 159 |
MS.gene32107.t1 | MTR_3g087230 | 48.598 | 107 | 55 | 0 | 138 | 244 | 182 | 288 | 9.19e-30 | 120 |
MS.gene32107.t1 | MTR_3g087230 | 48.598 | 107 | 55 | 0 | 138 | 244 | 181 | 287 | 9.34e-30 | 120 |
MS.gene32107.t1 | MTR_1g044700 | 55.238 | 105 | 41 | 1 | 95 | 199 | 1 | 99 | 1.02e-27 | 111 |
MS.gene32107.t1 | MTR_8g098725 | 39.873 | 158 | 73 | 5 | 498 | 650 | 133 | 273 | 5.16e-23 | 101 |
MS.gene32107.t1 | MTR_8g098725 | 39.873 | 158 | 69 | 5 | 498 | 650 | 133 | 269 | 5.78e-23 | 100 |
MS.gene32107.t1 | MTR_2g068730 | 56.164 | 73 | 32 | 0 | 587 | 659 | 144 | 216 | 1.00e-20 | 93.2 |
MS.gene32107.t1 | MTR_3g087230 | 48.235 | 85 | 44 | 0 | 138 | 222 | 182 | 266 | 2.40e-20 | 92.4 |
MS.gene32107.t1 | MTR_3g087230 | 48.235 | 85 | 44 | 0 | 138 | 222 | 181 | 265 | 2.54e-20 | 92.0 |
MS.gene32107.t1 | MTR_5g010120 | 54.667 | 75 | 34 | 0 | 575 | 649 | 142 | 216 | 3.51e-19 | 88.2 |
MS.gene32107.t1 | MTR_2g096080 | 45.918 | 98 | 51 | 1 | 554 | 651 | 105 | 200 | 8.48e-19 | 87.0 |
MS.gene32107.t1 | MTR_4g061823 | 43.878 | 98 | 54 | 1 | 554 | 651 | 94 | 190 | 3.10e-18 | 85.1 |
MS.gene32107.t1 | MTR_4g061910 | 43.878 | 98 | 54 | 1 | 554 | 651 | 94 | 190 | 3.10e-18 | 85.1 |
MS.gene32107.t1 | MTR_1g008220 | 36.296 | 135 | 69 | 4 | 518 | 651 | 159 | 277 | 7.04e-16 | 79.0 |
MS.gene32107.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 602 | 650 | 190 | 238 | 1.14e-14 | 74.7 |
MS.gene32107.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 602 | 650 | 197 | 245 | 1.15e-14 | 74.7 |
MS.gene32107.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 602 | 650 | 226 | 274 | 2.28e-14 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32107.t1 | AT1G04500 | 50.711 | 422 | 149 | 15 | 297 | 704 | 1 | 377 | 2.49e-113 | 347 |
MS.gene32107.t1 | AT1G04500 | 51.319 | 417 | 144 | 15 | 302 | 704 | 15 | 386 | 4.72e-113 | 346 |
MS.gene32107.t1 | AT1G04500 | 51.319 | 417 | 144 | 15 | 302 | 704 | 15 | 386 | 4.72e-113 | 346 |
MS.gene32107.t1 | AT2G05590 | 52.564 | 312 | 116 | 8 | 1 | 301 | 1 | 291 | 2.02e-98 | 305 |
MS.gene32107.t1 | AT2G33350 | 48.322 | 447 | 171 | 17 | 281 | 704 | 9 | 418 | 2.99e-98 | 309 |
MS.gene32107.t1 | AT2G33350 | 49.531 | 426 | 159 | 16 | 302 | 704 | 17 | 409 | 1.69e-97 | 307 |
MS.gene32107.t1 | AT2G33350 | 49.531 | 426 | 159 | 16 | 302 | 704 | 6 | 398 | 4.36e-97 | 305 |
MS.gene32107.t1 | AT2G33350 | 48.946 | 427 | 161 | 16 | 302 | 704 | 17 | 410 | 9.23e-96 | 302 |
MS.gene32107.t1 | AT2G05590 | 50.704 | 284 | 108 | 8 | 1 | 273 | 1 | 263 | 5.88e-83 | 263 |
MS.gene32107.t1 | AT1G04500 | 45.614 | 342 | 123 | 16 | 302 | 627 | 15 | 309 | 6.26e-66 | 223 |
MS.gene32107.t1 | AT2G33350 | 43.678 | 348 | 141 | 15 | 302 | 627 | 17 | 331 | 6.45e-57 | 197 |
MS.gene32107.t1 | AT4G39870 | 53.659 | 164 | 75 | 1 | 138 | 301 | 204 | 366 | 2.01e-53 | 189 |
MS.gene32107.t1 | AT4G39870 | 53.659 | 164 | 75 | 1 | 138 | 301 | 204 | 366 | 2.01e-53 | 189 |
MS.gene32107.t1 | AT5G41380 | 56.250 | 96 | 33 | 3 | 555 | 650 | 173 | 259 | 5.11e-23 | 100 |
MS.gene32107.t1 | AT1G63820 | 39.837 | 123 | 72 | 1 | 550 | 670 | 134 | 256 | 1.86e-22 | 99.0 |
MS.gene32107.t1 | AT3G12890 | 52.809 | 89 | 36 | 1 | 597 | 685 | 130 | 212 | 1.15e-21 | 95.5 |
MS.gene32107.t1 | AT4G27900 | 38.144 | 97 | 45 | 2 | 555 | 651 | 178 | 259 | 1.69e-15 | 77.8 |
MS.gene32107.t1 | AT4G27900 | 38.144 | 97 | 45 | 2 | 555 | 651 | 178 | 259 | 1.69e-15 | 77.8 |
MS.gene32107.t1 | AT5G59990 | 39.850 | 133 | 63 | 3 | 554 | 686 | 120 | 235 | 8.17e-15 | 75.1 |
MS.gene32107.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 604 | 650 | 137 | 183 | 1.04e-14 | 73.6 |
MS.gene32107.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 604 | 650 | 137 | 183 | 1.04e-14 | 73.6 |
MS.gene32107.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 604 | 650 | 137 | 183 | 1.04e-14 | 73.6 |
MS.gene32107.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 604 | 650 | 216 | 262 | 2.28e-14 | 74.3 |
Find 139 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCCAAGTTTGAGATTTC+TGG | 0.139924 | 1.2:-55992928 | None:intergenic |
CGCAAGAGTGCTGAACTTTC+TGG | 0.147737 | 1.2:+55985203 | MS.gene32107:CDS |
TTTGCAAAGAATGATGATTT+TGG | 0.194304 | 1.2:+55993270 | MS.gene32107:CDS |
TGATTCAGTTGCACCTCTTA+TGG | 0.196419 | 1.2:+55991822 | MS.gene32107:CDS |
TCAGAATTCTGCAAAGCTTC+TGG | 0.225403 | 1.2:-55991412 | None:intergenic |
TACCTGGGAGGAGGAGGTGG+TGG | 0.263910 | 1.2:-55983532 | None:intergenic |
GTCAATGGGTCTTACTTTAT+AGG | 0.272200 | 1.2:+55985048 | MS.gene32107:CDS |
TGCCTCCCTAATATTGTAAA+AGG | 0.275007 | 1.2:+55985023 | MS.gene32107:CDS |
TGTCATTGTCAATTTCTTCT+TGG | 0.278477 | 1.2:-55991624 | None:intergenic |
GTTTAACCCTCCTGACCTTC+AGG | 0.295741 | 1.2:+55992122 | MS.gene32107:CDS |
ACTTTCTGGTCCTGGTTTGC+TGG | 0.296591 | 1.2:+55985217 | MS.gene32107:CDS |
TCTCCTTCTTGCAATTATCT+TGG | 0.304557 | 1.2:+55991925 | MS.gene32107:CDS |
ATCTTGTTGAATAGGTTAAC+TGG | 0.306695 | 1.2:+55986091 | MS.gene32107:intron |
TGATAGATTATTGCTATTGT+TGG | 0.307253 | 1.2:-55991587 | None:intergenic |
TGGTTTGTTTGGTGGAAATA+TGG | 0.310217 | 1.2:+55992014 | MS.gene32107:CDS |
GTCATTGTCAATTTCTTCTT+GGG | 0.322955 | 1.2:-55991623 | None:intergenic |
ACTCAATCATCATCTTCTTC+TGG | 0.326796 | 1.2:+55984741 | MS.gene32107:CDS |
TCGAAAATTCGAGCGCTAAG+AGG | 0.329398 | 1.2:-55991367 | None:intergenic |
ACTGATAGTTCTGGTTTGTT+TGG | 0.336862 | 1.2:+55992003 | MS.gene32107:CDS |
TAATATATTTGTTGCATATG+AGG | 0.345362 | 1.2:-55991473 | None:intergenic |
GATTCAGTTGCACCTCTTAT+GGG | 0.348322 | 1.2:+55991823 | MS.gene32107:CDS |
GCTTTGTCTACTGATAGTTC+TGG | 0.348575 | 1.2:+55991994 | MS.gene32107:CDS |
GAACTTCAGCAAGAAAATTA+AGG | 0.349765 | 1.2:+55993032 | MS.gene32107:CDS |
TCTCTTTGGTGTAGGTTTCA+AGG | 0.357366 | 1.2:-55985567 | None:intergenic |
GGAGACTTCTTTGATGCATT+TGG | 0.363049 | 1.2:-55984939 | None:intergenic |
CTTGGAAGACTCCACTTTCA+AGG | 0.364962 | 1.2:+55992942 | MS.gene32107:CDS |
AAAACAGGTGGTAATGATAA+AGG | 0.370742 | 1.2:-55991850 | None:intergenic |
CTTGATTATCAAGGAGATAA+TGG | 0.371169 | 1.2:+55992066 | MS.gene32107:CDS |
TTTGTCTTTACAACTGTATA+CGG | 0.372502 | 1.2:+55985708 | MS.gene32107:CDS |
TTTGTAAACTGATAGATTGT+TGG | 0.373972 | 1.2:+55985503 | MS.gene32107:intron |
AGAGGTGCAACTGAATCATT+TGG | 0.378768 | 1.2:-55991817 | None:intergenic |
CTCTTTGGTGTAGGTTTCAA+GGG | 0.383521 | 1.2:-55985566 | None:intergenic |
ATGAAGATCCTACCTCTATA+AGG | 0.388281 | 1.2:+55984868 | MS.gene32107:CDS |
TTGAATGACTTACTTGGAAT+TGG | 0.396006 | 1.2:+55985939 | MS.gene32107:CDS |
GCTACTAGTTGTTGATTCTC+AGG | 0.396916 | 1.2:-55992877 | None:intergenic |
CTGGGAGGAGGAGGTGGTGG+GGG | 0.400276 | 1.2:-55983529 | None:intergenic |
ATATTGTTGTTTGTGCTAGT+TGG | 0.401414 | 1.2:-55991550 | None:intergenic |
CAGAATTCTGCAAAGCTTCT+GGG | 0.401559 | 1.2:-55991411 | None:intergenic |
AGTGCTGAACTTTCTGGTCC+TGG | 0.402601 | 1.2:+55985209 | MS.gene32107:CDS |
GATAGCAGACCTCGAGTTAG+AGG | 0.402793 | 1.2:+55993243 | MS.gene32107:CDS |
AGTGGACCTTGTGATACATT+TGG | 0.404318 | 1.2:+55986118 | MS.gene32107:CDS |
TTCTTCTGGATATAATTATG+AGG | 0.408737 | 1.2:+55984755 | MS.gene32107:CDS |
GGGTTAAACACCCTCTGAAT+AGG | 0.414662 | 1.2:-55992108 | None:intergenic |
CCTGGGAGGAGGAGGTGGTG+GGG | 0.417665 | 1.2:-55983530 | None:intergenic |
AGGTTTACCCTCTTTAGAAT+GGG | 0.417682 | 1.2:-55984646 | None:intergenic |
ATGTGTTTGAATGACTTACT+TGG | 0.423035 | 1.2:+55985933 | MS.gene32107:CDS |
AATGGAATAGTTGCATTTGA+AGG | 0.424110 | 1.2:-55993638 | None:intergenic |
TGCAATTATCTTGGTCCTGC+CGG | 0.431147 | 1.2:+55991934 | MS.gene32107:CDS |
GCAACTATTCCATTCAATCA+TGG | 0.437657 | 1.2:+55993647 | MS.gene32107:CDS |
CCAAGGCTGTTTCGACCTAC+TGG | 0.444132 | 1.2:+55985735 | MS.gene32107:CDS |
GATAGTTCTGGTTTGTTTGG+TGG | 0.449481 | 1.2:+55992006 | MS.gene32107:CDS |
AAGGTTTACCCTCTTTAGAA+TGG | 0.450695 | 1.2:-55984647 | None:intergenic |
TAATTGCAAGAAGGAGAAGA+AGG | 0.453970 | 1.2:-55991919 | None:intergenic |
GATAGGCAAGGTGCTGTGTT+TGG | 0.454774 | 1.2:+55985527 | MS.gene32107:CDS |
ATATTCTTCAACTCAAACTC+TGG | 0.456522 | 1.2:-55986163 | None:intergenic |
ACAGCATGTTCATCCGTTGA+TGG | 0.462537 | 1.2:+55991775 | MS.gene32107:CDS |
TTATCTTGGTCCTGCCGGTA+TGG | 0.463392 | 1.2:+55991939 | MS.gene32107:CDS |
TGTGAAAGAGGAAGATGATA+TGG | 0.463481 | 1.2:+55993573 | MS.gene32107:CDS |
GACACCAGAAATCTCAAACT+TGG | 0.464943 | 1.2:+55992924 | MS.gene32107:CDS |
CGAAAATTCGAGCGCTAAGA+GGG | 0.464964 | 1.2:-55991366 | None:intergenic |
TGAAGAAGAAGATGAAGAAG+AGG | 0.466581 | 1.2:+55993323 | MS.gene32107:CDS |
GAAGACTCCACTTTCAAGGT+TGG | 0.473074 | 1.2:+55992946 | MS.gene32107:CDS |
TTTGATGCATTTGGAGTCTG+AGG | 0.473617 | 1.2:-55984930 | None:intergenic |
GATTACCTGGGAGGAGGAGG+TGG | 0.479238 | 1.2:-55983535 | None:intergenic |
CAGTTGTAAAGACAAAAGTT+TGG | 0.480072 | 1.2:-55985701 | None:intergenic |
ACAGTCAATACCTGAAGGTC+AGG | 0.480367 | 1.2:-55992132 | None:intergenic |
GAATCAAATCCATGATTGAA+TGG | 0.483820 | 1.2:-55993656 | None:intergenic |
CAGCATGTTCATCCGTTGAT+GGG | 0.484565 | 1.2:+55991776 | MS.gene32107:CDS |
GTTTGAGTTGAAGAATATTG+AGG | 0.487986 | 1.2:+55986168 | MS.gene32107:CDS |
GCAGTAGTAAGAGAACCATT+AGG | 0.493364 | 1.2:-55991973 | None:intergenic |
TCGCAATCAACAAATGCATC+TGG | 0.502636 | 1.2:-55984801 | None:intergenic |
ATGGCGGCATACATGCCTAA+TGG | 0.504835 | 1.2:+55991958 | MS.gene32107:CDS |
AATGACTTACTTGGAATTGG+TGG | 0.507739 | 1.2:+55985942 | MS.gene32107:CDS |
GATAAAGGAGCTCCCATAAG+AGG | 0.508957 | 1.2:-55991835 | None:intergenic |
ACCTGGGAGGAGGAGGTGGT+GGG | 0.514045 | 1.2:-55983531 | None:intergenic |
GTATGCATGCCGCAAAACTC+TGG | 0.514757 | 1.2:+55993218 | MS.gene32107:intron |
TTGTCTGTGTTTGATCCTGA+CGG | 0.514977 | 1.2:-55984696 | None:intergenic |
TATTGTAAAAGGATGTCAAT+GGG | 0.515362 | 1.2:+55985034 | MS.gene32107:CDS |
TTGTCCTGATCCTATTCAGA+GGG | 0.518686 | 1.2:+55992098 | MS.gene32107:CDS |
AACACCCTCTGAATAGGATC+AGG | 0.520235 | 1.2:-55992102 | None:intergenic |
AATGAAGGAACATTGAAAGA+TGG | 0.520786 | 1.2:-55991676 | None:intergenic |
AGGCAAGGTGCTGTGTTTGG+TGG | 0.525367 | 1.2:+55985530 | MS.gene32107:CDS |
GGAATTAGTGGGAAAGAGAT+CGG | 0.528255 | 1.2:-55983508 | None:intergenic |
GGCAAGGTGCTGTGTTTGGT+GGG | 0.531315 | 1.2:+55985531 | MS.gene32107:CDS |
ATGTATGCCGCCATACCGGC+AGG | 0.531779 | 1.2:-55991949 | None:intergenic |
ACTGATAGATTGTTGGAGAT+AGG | 0.535985 | 1.2:+55985510 | MS.gene32107:intron |
CCCCACCACCTCCTCCTCCC+AGG | 0.537474 | 1.2:+55983530 | MS.gene32107:CDS |
CCAGTAGGTCGAAACAGCCT+TGG | 0.538662 | 1.2:-55985735 | None:intergenic |
ACTACAGGTAGTTGTGAAAG+AGG | 0.540728 | 1.2:+55993561 | MS.gene32107:intron |
GAGAATCAACAACTAGTAGC+TGG | 0.540899 | 1.2:+55992880 | MS.gene32107:CDS |
TTGATGCATTTGGAGTCTGA+GGG | 0.541250 | 1.2:-55984929 | None:intergenic |
ACACAAGAACTTGATTATCA+AGG | 0.541577 | 1.2:+55992057 | MS.gene32107:CDS |
GAAGGAGAAGAAGGGTTCAA+AGG | 0.541723 | 1.2:-55991910 | None:intergenic |
TGTCTGTGTTTGATCCTGAC+GGG | 0.542123 | 1.2:-55984695 | None:intergenic |
AATGATTACCTGGGAGGAGG+AGG | 0.543563 | 1.2:-55983538 | None:intergenic |
GGTAGACATACCAGCAAACC+AGG | 0.547394 | 1.2:-55985227 | None:intergenic |
GACTTACTTGGAATTGGTGG+TGG | 0.547890 | 1.2:+55985945 | MS.gene32107:CDS |
CTACTACTCCTTATAGAGGT+AGG | 0.555735 | 1.2:-55984876 | None:intergenic |
ATATTGTAAAAGGATGTCAA+TGG | 0.557940 | 1.2:+55985033 | MS.gene32107:CDS |
GGGTTCAAAGGAACATAAGA+AGG | 0.558201 | 1.2:-55991898 | None:intergenic |
GATATATTTGCTCATATCAG+TGG | 0.567084 | 1.2:+55993607 | MS.gene32107:CDS |
ACTACTACTACTCCTTATAG+AGG | 0.570614 | 1.2:-55984880 | None:intergenic |
TCAAACACATGTAGTAGTAC+CGG | 0.573273 | 1.2:-55985920 | None:intergenic |
CAGCTCATGAGATATAAAAG+TGG | 0.574140 | 1.2:-55984982 | None:intergenic |
CTGGACTATGAGCTAGACAT+TGG | 0.574296 | 1.2:-55986144 | None:intergenic |
AGGCATGTATGCCGCCATAC+CGG | 0.574531 | 1.2:-55991953 | None:intergenic |
CAACAACTAGTAGCTGGTGC+TGG | 0.575480 | 1.2:+55992886 | MS.gene32107:CDS |
GATGTGACTGGAAGGAATGA+AGG | 0.578846 | 1.2:-55991691 | None:intergenic |
AATTGCAAGAAGGAGAAGAA+GGG | 0.582488 | 1.2:-55991918 | None:intergenic |
ACTTGCTGTGATGATGTGAC+TGG | 0.583948 | 1.2:-55991703 | None:intergenic |
TCTTGGTCCTGCCGGTATGG+CGG | 0.591145 | 1.2:+55991942 | MS.gene32107:CDS |
AGAAGCTTTGCAGAATTCTG+AGG | 0.591368 | 1.2:+55991414 | MS.gene32107:CDS |
GCAAATCTTCCTCTAACTCG+AGG | 0.593646 | 1.2:-55993252 | None:intergenic |
GGTTTACCCTCTTTAGAATG+GGG | 0.594701 | 1.2:-55984645 | None:intergenic |
TCTTTGGTGTAGGTTTCAAG+GGG | 0.596212 | 1.2:-55985565 | None:intergenic |
AATAGGTTAACTGGAACTAG+TGG | 0.600240 | 1.2:+55986100 | MS.gene32107:intron |
TTACTTGGAATTGGTGGTGG+CGG | 0.601367 | 1.2:+55985948 | MS.gene32107:CDS |
GTCAATACCTGAAGGTCAGG+AGG | 0.601952 | 1.2:-55992129 | None:intergenic |
CAATCAACAAATGCATCTGG+TGG | 0.603308 | 1.2:-55984798 | None:intergenic |
GTTTACCCTCTTTAGAATGG+GGG | 0.610367 | 1.2:-55984644 | None:intergenic |
ACATGAAGAAAAGAAATGAA+AGG | 0.610947 | 1.2:+55993010 | MS.gene32107:CDS |
ATTGTCCTGATCCTATTCAG+AGG | 0.615011 | 1.2:+55992097 | MS.gene32107:CDS |
TGATAGTGAGAAATCTATTG+AGG | 0.622836 | 1.2:-55991653 | None:intergenic |
CAACTGTATACGGTCAGCCA+AGG | 0.626820 | 1.2:+55985718 | MS.gene32107:CDS |
AAGGGCAGTACGTTGAAACA+TGG | 0.631189 | 1.2:+55985158 | MS.gene32107:intron |
GGACCAAGATAATTGCAAGA+AGG | 0.631874 | 1.2:-55991928 | None:intergenic |
ATTTGCTTCTTCGAAAACGT+CGG | 0.640807 | 1.2:-55984904 | None:intergenic |
TAGATTGTTGGAGATAGGCA+AGG | 0.648046 | 1.2:+55985515 | MS.gene32107:intron |
GATATGAGCAAATATATCTG+AGG | 0.650959 | 1.2:-55993602 | None:intergenic |
TCAATACCTGAAGGTCAGGA+GGG | 0.652626 | 1.2:-55992128 | None:intergenic |
GATACTAATAGAACTGCTAG+TGG | 0.652698 | 1.2:+55993294 | MS.gene32107:CDS |
GCTGTGATGATGTGACTGGA+AGG | 0.653513 | 1.2:-55991699 | None:intergenic |
TGGTTTCCAAATGTATCACA+AGG | 0.653524 | 1.2:-55986124 | None:intergenic |
GAGTCATCTGAAAGATTGAG+CGG | 0.661048 | 1.2:-55984960 | None:intergenic |
GTAAGTTGAACATGATGATG+AGG | 0.662251 | 1.2:-55991754 | None:intergenic |
ATACTGCGAAAACCCATCAA+CGG | 0.666515 | 1.2:-55991788 | None:intergenic |
TGAGATTTCTGGTGTCAGAG+TGG | 0.672060 | 1.2:-55992917 | None:intergenic |
ACACATGTAGTAGTACCGGT+TGG | 0.697824 | 1.2:-55985916 | None:intergenic |
TAGCAATAGCAATAACACAG+TGG | 0.785267 | 1.2:+55991519 | MS.gene32107:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 55983471 | 55993675 | 55983471 | ID=MS.gene32107 |
chr1.2 | mRNA | 55983471 | 55993675 | 55983471 | ID=MS.gene32107.t1;Parent=MS.gene32107 |
chr1.2 | exon | 55983471 | 55983551 | 55983471 | ID=MS.gene32107.t1.exon1;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55983471 | 55983551 | 55983471 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55984639 | 55985069 | 55984639 | ID=MS.gene32107.t1.exon2;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55984639 | 55985069 | 55984639 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55985166 | 55985238 | 55985166 | ID=MS.gene32107.t1.exon3;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55985166 | 55985238 | 55985166 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55985518 | 55985598 | 55985518 | ID=MS.gene32107.t1.exon4;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55985518 | 55985598 | 55985518 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55985693 | 55985756 | 55985693 | ID=MS.gene32107.t1.exon5;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55985693 | 55985756 | 55985693 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55985913 | 55986000 | 55985913 | ID=MS.gene32107.t1.exon6;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55985913 | 55986000 | 55985913 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55986105 | 55986189 | 55986105 | ID=MS.gene32107.t1.exon7;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55986105 | 55986189 | 55986105 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55991352 | 55992143 | 55991352 | ID=MS.gene32107.t1.exon8;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55991352 | 55992143 | 55991352 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55992868 | 55993053 | 55992868 | ID=MS.gene32107.t1.exon9;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55992868 | 55993053 | 55992868 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55993219 | 55993344 | 55993219 | ID=MS.gene32107.t1.exon10;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55993219 | 55993344 | 55993219 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
chr1.2 | exon | 55993568 | 55993675 | 55993568 | ID=MS.gene32107.t1.exon11;Parent=MS.gene32107.t1 |
chr1.2 | CDS | 55993568 | 55993675 | 55993568 | ID=cds.MS.gene32107.t1;Parent=MS.gene32107.t1 |
Gene Sequence |
Protein sequence |