Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32331.t1 | XP_013466407.1 | 91.9 | 172 | 14 | 0 | 1 | 172 | 1 | 172 | 2.60E-77 | 298.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32331.t1 | O23310 | 52.4 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 1.3e-24 | 114.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32331.t1 | A0A072VGA7 | 91.9 | 172 | 14 | 0 | 1 | 172 | 1 | 172 | 1.9e-77 | 298.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene32331.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32331.t1 | MTR_1g029070 | 91.860 | 172 | 14 | 0 | 1 | 172 | 1 | 172 | 2.59e-104 | 296 |
MS.gene32331.t1 | MTR_1g072790 | 47.287 | 129 | 60 | 2 | 48 | 172 | 25 | 149 | 1.13e-35 | 122 |
MS.gene32331.t1 | MTR_8g091720 | 55.670 | 97 | 43 | 0 | 57 | 153 | 33 | 129 | 1.24e-34 | 120 |
MS.gene32331.t1 | MTR_1g039040 | 57.303 | 89 | 38 | 0 | 57 | 145 | 11 | 99 | 2.52e-34 | 119 |
MS.gene32331.t1 | MTR_7g061270 | 45.600 | 125 | 54 | 2 | 48 | 169 | 19 | 132 | 5.28e-34 | 118 |
MS.gene32331.t1 | MTR_7g100650 | 44.615 | 130 | 58 | 2 | 43 | 169 | 14 | 132 | 5.60e-34 | 118 |
MS.gene32331.t1 | MTR_5g095740 | 49.123 | 114 | 53 | 2 | 46 | 159 | 18 | 126 | 9.11e-33 | 115 |
MS.gene32331.t1 | MTR_2g026710 | 56.044 | 91 | 40 | 0 | 57 | 147 | 22 | 112 | 1.59e-32 | 114 |
MS.gene32331.t1 | MTR_3g058980 | 52.000 | 100 | 47 | 1 | 46 | 145 | 22 | 120 | 5.01e-32 | 114 |
MS.gene32331.t1 | MTR_4g133952 | 40.441 | 136 | 80 | 1 | 9 | 144 | 16 | 150 | 3.72e-31 | 112 |
MS.gene32331.t1 | MTR_4g133938 | 54.945 | 91 | 41 | 0 | 53 | 143 | 20 | 110 | 1.86e-30 | 108 |
MS.gene32331.t1 | MTR_1g088860 | 44.954 | 109 | 60 | 0 | 37 | 145 | 21 | 129 | 2.19e-30 | 109 |
MS.gene32331.t1 | MTR_8g093920 | 53.933 | 89 | 41 | 0 | 57 | 145 | 45 | 133 | 8.45e-30 | 108 |
MS.gene32331.t1 | MTR_4g119500 | 49.474 | 95 | 48 | 0 | 57 | 151 | 27 | 121 | 1.52e-29 | 105 |
MS.gene32331.t1 | MTR_0392s0020 | 50.000 | 88 | 44 | 0 | 57 | 144 | 23 | 110 | 7.35e-28 | 101 |
MS.gene32331.t1 | MTR_1g028480 | 56.098 | 82 | 36 | 0 | 87 | 168 | 24 | 105 | 2.08e-27 | 99.8 |
MS.gene32331.t1 | MTR_1g029100 | 45.000 | 80 | 44 | 0 | 53 | 132 | 3 | 82 | 3.83e-22 | 85.5 |
MS.gene32331.t1 | MTR_1g083070 | 42.529 | 87 | 50 | 0 | 57 | 143 | 9 | 95 | 4.53e-22 | 86.3 |
MS.gene32331.t1 | MTR_5g095900 | 33.721 | 86 | 57 | 0 | 56 | 141 | 20 | 105 | 5.05e-14 | 67.0 |
MS.gene32331.t1 | MTR_2g056000 | 26.126 | 111 | 82 | 0 | 37 | 147 | 26 | 136 | 8.97e-13 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32331.t1 | AT4G14540 | 51.402 | 107 | 52 | 0 | 48 | 154 | 17 | 123 | 7.81e-35 | 120 |
MS.gene32331.t1 | AT2G38880 | 50.893 | 112 | 51 | 2 | 57 | 168 | 26 | 133 | 1.76e-33 | 115 |
MS.gene32331.t1 | AT5G47640 | 52.941 | 102 | 47 | 1 | 47 | 148 | 23 | 123 | 2.64e-33 | 117 |
MS.gene32331.t1 | AT3G53340 | 41.429 | 140 | 59 | 2 | 30 | 169 | 19 | 135 | 2.87e-33 | 116 |
MS.gene32331.t1 | AT3G53340 | 41.429 | 140 | 59 | 2 | 30 | 169 | 19 | 135 | 2.87e-33 | 116 |
MS.gene32331.t1 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 3.75e-33 | 115 |
MS.gene32331.t1 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 4.30e-33 | 115 |
MS.gene32331.t1 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 4.30e-33 | 115 |
MS.gene32331.t1 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 4.30e-33 | 115 |
MS.gene32331.t1 | AT2G37060 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 5.12e-33 | 115 |
MS.gene32331.t1 | AT2G37060 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 5.12e-33 | 115 |
MS.gene32331.t1 | AT2G37060 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 5.12e-33 | 115 |
MS.gene32331.t1 | AT5G47670 | 52.041 | 98 | 46 | 1 | 57 | 154 | 34 | 130 | 9.10e-32 | 113 |
MS.gene32331.t1 | AT5G47670 | 52.041 | 98 | 46 | 1 | 57 | 154 | 63 | 159 | 2.07e-31 | 113 |
MS.gene32331.t1 | AT5G47670 | 52.041 | 98 | 46 | 1 | 57 | 154 | 63 | 159 | 2.07e-31 | 113 |
MS.gene32331.t1 | AT1G21970 | 38.562 | 153 | 81 | 2 | 1 | 143 | 1 | 150 | 2.97e-31 | 113 |
MS.gene32331.t1 | AT3G53340 | 45.045 | 111 | 49 | 1 | 30 | 140 | 19 | 117 | 6.33e-31 | 108 |
MS.gene32331.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.48e-31 | 108 |
MS.gene32331.t1 | AT2G13570 | 55.056 | 89 | 40 | 0 | 57 | 145 | 41 | 129 | 9.52e-31 | 111 |
MS.gene32331.t1 | AT3G53340 | 45.690 | 116 | 51 | 2 | 30 | 145 | 19 | 122 | 1.17e-30 | 109 |
MS.gene32331.t1 | AT3G53340 | 45.690 | 116 | 51 | 2 | 30 | 145 | 19 | 122 | 1.17e-30 | 109 |
MS.gene32331.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 1.73e-30 | 109 |
MS.gene32331.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 1.73e-30 | 109 |
MS.gene32331.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 5.21e-30 | 107 |
MS.gene32331.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 5.21e-30 | 107 |
MS.gene32331.t1 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 5.21e-30 | 107 |
MS.gene32331.t1 | AT2G47810 | 51.190 | 84 | 41 | 0 | 57 | 140 | 56 | 139 | 1.31e-27 | 101 |
MS.gene32331.t1 | AT1G09030 | 43.119 | 109 | 60 | 1 | 51 | 159 | 2 | 108 | 1.22e-26 | 98.6 |
MS.gene32331.t1 | AT5G08190 | 27.358 | 106 | 77 | 0 | 46 | 151 | 5 | 110 | 8.72e-12 | 60.5 |
MS.gene32331.t1 | AT5G08190 | 30.952 | 84 | 58 | 0 | 46 | 129 | 5 | 88 | 1.01e-11 | 60.5 |
MS.gene32331.t1 | AT5G23090 | 23.478 | 115 | 85 | 1 | 42 | 156 | 1 | 112 | 8.66e-11 | 57.8 |
Find 46 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTAATTGCATATCAATAT+TGG | 0.281359 | 1.4:-14178589 | None:intergenic |
GCATGATTCTTGTCAAATTT+CGG | 0.290312 | 1.4:-14178256 | None:intergenic |
CCTCATGGTTGCGATAGTTT+TGG | 0.293177 | 1.4:-14178487 | None:intergenic |
TTAGTGGTGAAGATATAATA+TGG | 0.337402 | 1.4:+14178411 | MS.gene32331:CDS |
CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1.4:+14178436 | MS.gene32331:CDS |
ATATGGGCCATGGGTAGGTT+AGG | 0.348171 | 1.4:+14178428 | MS.gene32331:CDS |
ATTGTGTGTGTCTGATTTCA+TGG | 0.410886 | 1.4:+14178334 | MS.gene32331:CDS |
CACAGTTCCTCATTTGTTGT+TGG | 0.423880 | 1.4:-14178224 | None:intergenic |
AACATGGATGGGTCGGGTGC+TGG | 0.425049 | 1.4:+14178545 | MS.gene32331:CDS |
ACACAATTGTGTTGTTGCCT+TGG | 0.463454 | 1.4:-14178318 | None:intergenic |
ATGGATGGGTCGGGTGCTGG+TGG | 0.486211 | 1.4:+14178548 | MS.gene32331:CDS |
GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1.4:+14178395 | MS.gene32331:CDS |
TATGGGCCATGGGTAGGTTA+GGG | 0.487469 | 1.4:+14178429 | MS.gene32331:CDS |
GATTTAGTCCGTTTGCAAGC+AGG | 0.497822 | 1.4:+14178128 | MS.gene32331:intron |
TGGATTCAACATGGATGGGT+CGG | 0.500255 | 1.4:+14178538 | MS.gene32331:CDS |
GGATTCAACATGGATGGGTC+GGG | 0.516213 | 1.4:+14178539 | MS.gene32331:CDS |
ATTTAGTCCGTTTGCAAGCA+GGG | 0.519142 | 1.4:+14178129 | MS.gene32331:intron |
GATTCTTGTCAAATTTCGGA+TGG | 0.519326 | 1.4:-14178252 | None:intergenic |
TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1.4:+14178446 | MS.gene32331:CDS |
TGAAGATATAATATGGGCCA+TGG | 0.523399 | 1.4:+14178418 | MS.gene32331:CDS |
ATGGACTCCCTGCTTGCAAA+CGG | 0.525534 | 1.4:-14178136 | None:intergenic |
GCTCGTGGATTCAACATGGA+TGG | 0.528087 | 1.4:+14178533 | MS.gene32331:CDS |
GGTGCTGGTGGCTCGAGCAG+TGG | 0.541755 | 1.4:+14178560 | MS.gene32331:CDS |
CGTTCAGCACAATCAAGCTC+TGG | 0.543458 | 1.4:+14176909 | MS.gene32331:CDS |
TAGTGGTGAAGATATAATAT+GGG | 0.544148 | 1.4:+14178412 | MS.gene32331:CDS |
GGTGGCTCGAGCAGTGGTAA+TGG | 0.549299 | 1.4:+14178566 | MS.gene32331:CDS |
TGAACGGTTGTTGTTAAATG+AGG | 0.552826 | 1.4:-14176892 | None:intergenic |
TTTATCTCCAACAACAAATG+AGG | 0.571575 | 1.4:+14178217 | MS.gene32331:CDS |
TCCTAAAGTAGCATGGAGCA+TGG | 0.582752 | 1.4:+14176864 | None:intergenic |
AGTGGCACGTCAACTGCTCG+TGG | 0.583180 | 1.4:+14178518 | MS.gene32331:CDS |
CTCGTGGATTCAACATGGAT+GGG | 0.584715 | 1.4:+14178534 | MS.gene32331:CDS |
AACCATGAGGCTCAATTCAG+TGG | 0.593599 | 1.4:+14178500 | MS.gene32331:CDS |
ATTCTTGTCAAATTTCGGAT+GGG | 0.595454 | 1.4:-14178251 | None:intergenic |
ATGAAAACAATGAATCTCCA+AGG | 0.596844 | 1.4:+14178159 | MS.gene32331:CDS |
TTGTGTGTGTCTGATTTCAT+GGG | 0.598205 | 1.4:+14178335 | MS.gene32331:CDS |
ATATAATATGGGCCATGGGT+AGG | 0.601954 | 1.4:+14178423 | MS.gene32331:CDS |
AACTGCTCGTGGATTCAACA+TGG | 0.604751 | 1.4:+14178529 | MS.gene32331:CDS |
CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1.4:-14178435 | None:intergenic |
GAAGATATAATATGGGCCAT+GGG | 0.615040 | 1.4:+14178419 | MS.gene32331:CDS |
GCATTTCTCAACAGCCTCAG+TGG | 0.623536 | 1.4:-14178366 | None:intergenic |
CAGAGCTTGATTGTGCTGAA+CGG | 0.629066 | 1.4:-14176908 | None:intergenic |
TGCCACTGAATTGAGCCTCA+TGG | 0.650553 | 1.4:-14178502 | None:intergenic |
GAACGGTTGTTGTTAAATGA+GGG | 0.692444 | 1.4:-14176891 | None:intergenic |
GAAATTTGACAAGAATCATG+CGG | 0.699293 | 1.4:+14178258 | MS.gene32331:CDS |
CCAAAACTATCGCAACCATG+AGG | 0.711644 | 1.4:+14178487 | MS.gene32331:CDS |
CATGGGCATCATCACCACTG+AGG | 0.758004 | 1.4:+14178352 | MS.gene32331:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATCTAATAAAATCAATTAA+GGG | - | chr1.4:14177176-14177195 | None:intergenic | 10.0% |
!!! | ATTATTGTATTTAAAACTAA+TGG | + | chr1.4:14177590-14177609 | MS.gene32331:intron | 10.0% |
!!! | TTAAAGAAATTTTGATTTAA+GGG | + | chr1.4:14177322-14177341 | MS.gene32331:intron | 10.0% |
!!! | TTATTGTATTTAAAACTAAT+GGG | + | chr1.4:14177591-14177610 | MS.gene32331:intron | 10.0% |
!!! | TTTAAAGAAATTTTGATTTA+AGG | + | chr1.4:14177321-14177340 | MS.gene32331:intron | 10.0% |
!! | ATCTAATAAAATCAATTAAG+GGG | - | chr1.4:14177175-14177194 | None:intergenic | 15.0% |
!! | GAATCTAATAAAATCAATTA+AGG | - | chr1.4:14177177-14177196 | None:intergenic | 15.0% |
!!! | TAAAGAAATTTTGATTTAAG+GGG | + | chr1.4:14177323-14177342 | MS.gene32331:intron | 15.0% |
!!! | TATTATTTTAATATGTCTGA+GGG | + | chr1.4:14177428-14177447 | MS.gene32331:intron | 15.0% |
!!! | TTATTATTTTAATATGTCTG+AGG | + | chr1.4:14177427-14177446 | MS.gene32331:intron | 15.0% |
!!! | TTTTTCTACTTTTAAATCTA+AGG | - | chr1.4:14177920-14177939 | None:intergenic | 15.0% |
!! | TCTAATAAAATCAATTAAGG+GGG | - | chr1.4:14177174-14177193 | None:intergenic | 20.0% |
!!! | ATCAAAATCAATCTTTTACA+AGG | - | chr1.4:14177081-14177100 | None:intergenic | 20.0% |
!!! | TTGATTTTATTAGATTCTCA+AGG | + | chr1.4:14177180-14177199 | MS.gene32331:intron | 20.0% |
! | ACTCATTATAAAGAGATACA+AGG | - | chr1.4:14176969-14176988 | None:intergenic | 25.0% |
! | ACTCTGTGTAATAAAAAAGA+AGG | + | chr1.4:14177992-14178011 | MS.gene32331:intron | 25.0% |
! | AGCAAAATTGACGTATTTAA+GGG | - | chr1.4:14177730-14177749 | None:intergenic | 25.0% |
! | CTCATTATAAAGAGATACAA+GGG | - | chr1.4:14176968-14176987 | None:intergenic | 25.0% |
! | GGGATGACAAAAAAAAAATA+TGG | + | chr1.4:14177343-14177362 | MS.gene32331:intron | 25.0% |
! | TAGAAATAAAGTGAGAGAAA+AGG | + | chr1.4:14177681-14177700 | MS.gene32331:intron | 25.0% |
! | TAGCAAAATTGACGTATTTA+AGG | - | chr1.4:14177731-14177750 | None:intergenic | 25.0% |
! | TAGTGGTGAAGATATAATAT+GGG | + | chr1.4:14178412-14178431 | MS.gene32331:CDS | 25.0% |
! | TTAGTGGTGAAGATATAATA+TGG | + | chr1.4:14178411-14178430 | MS.gene32331:CDS | 25.0% |
! | TTCATTGTTGATCTATCTAA+TGG | + | chr1.4:14177756-14177775 | MS.gene32331:intron | 25.0% |
!! | AATTTCAGCATCAATGTTTT+CGG | - | chr1.4:14178186-14178205 | None:intergenic | 25.0% |
!! | CTAAAAAAGATTTGAGATCT+TGG | + | chr1.4:14177484-14177503 | MS.gene32331:intron | 25.0% |
!!! | TGCATCACTTTTTTTTTTGA+AGG | + | chr1.4:14177247-14177266 | MS.gene32331:intron | 25.0% |
!!! | TGTTATTTTAGAGAAATACG+AGG | - | chr1.4:14176998-14177017 | None:intergenic | 25.0% |
!!! | TTCTACTTTTAAATCTAAGG+TGG | - | chr1.4:14177917-14177936 | None:intergenic | 25.0% |
!!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1.4:14177471-14177490 | None:intergenic | 25.0% |
AAAAATATCTCAAGATGCCA+AGG | + | chr1.4:14178301-14178320 | MS.gene32331:CDS | 30.0% | |
AAATAAAGTGAGAGAAAAGG+TGG | + | chr1.4:14177684-14177703 | MS.gene32331:intron | 30.0% | |
AAATTGAGAGAAAGAGATAG+AGG | - | chr1.4:14177382-14177401 | None:intergenic | 30.0% | |
AATAAAGTGAGAGAAAAGGT+GGG | + | chr1.4:14177685-14177704 | MS.gene32331:intron | 30.0% | |
ATGAAAACAATGAATCTCCA+AGG | + | chr1.4:14178159-14178178 | MS.gene32331:CDS | 30.0% | |
ATTCTTGTCAAATTTCGGAT+GGG | - | chr1.4:14178254-14178273 | None:intergenic | 30.0% | |
GAAATTTGACAAGAATCATG+CGG | + | chr1.4:14178258-14178277 | MS.gene32331:CDS | 30.0% | |
GCAAAATTGACGTATTTAAG+GGG | - | chr1.4:14177729-14177748 | None:intergenic | 30.0% | |
GCATGATTCTTGTCAAATTT+CGG | - | chr1.4:14178259-14178278 | None:intergenic | 30.0% | |
TGTCAATTATACGTTACGTT+CGG | + | chr1.4:14177961-14177980 | MS.gene32331:intron | 30.0% | |
TTTATCTCCAACAACAAATG+AGG | + | chr1.4:14178217-14178236 | MS.gene32331:CDS | 30.0% | |
! | GGAGATTCATTGTTTTCATA+TGG | - | chr1.4:14178158-14178177 | None:intergenic | 30.0% |
! | GTCTGAGGGTTATAAATTTT+GGG | + | chr1.4:14177442-14177461 | MS.gene32331:intron | 30.0% |
! | TCTGAGGGTTATAAATTTTG+GGG | + | chr1.4:14177443-14177462 | MS.gene32331:intron | 30.0% |
! | TGTCTGAGGGTTATAAATTT+TGG | + | chr1.4:14177441-14177460 | MS.gene32331:intron | 30.0% |
!!! | TTGTTAGCGATTTTTTACAC+TGG | + | chr1.4:14177284-14177303 | MS.gene32331:intron | 30.0% |
ATTGTGTGTGTCTGATTTCA+TGG | + | chr1.4:14178334-14178353 | MS.gene32331:CDS | 35.0% | |
CGGAAAGAAAGATCTAACTT+GGG | + | chr1.4:14177215-14177234 | MS.gene32331:intron | 35.0% | |
CTTAACTACGTGCTTATGTT+TGG | + | chr1.4:14178106-14178125 | MS.gene32331:intron | 35.0% | |
GAAGATATAATATGGGCCAT+GGG | + | chr1.4:14178419-14178438 | MS.gene32331:CDS | 35.0% | |
GATTCTTGTCAAATTTCGGA+TGG | - | chr1.4:14178255-14178274 | None:intergenic | 35.0% | |
TCGGAAAGAAAGATCTAACT+TGG | + | chr1.4:14177214-14177233 | MS.gene32331:intron | 35.0% | |
TGAAGATATAATATGGGCCA+TGG | + | chr1.4:14178418-14178437 | MS.gene32331:CDS | 35.0% | |
TTGTGTGTGTCTGATTTCAT+GGG | + | chr1.4:14178335-14178354 | MS.gene32331:CDS | 35.0% | |
! | GAACGGTTGTTGTTAAATGA+GGG | - | chr1.4:14176894-14176913 | None:intergenic | 35.0% |
! | TCTCAAGGCATTATTTGCTT+CGG | + | chr1.4:14177195-14177214 | MS.gene32331:intron | 35.0% |
! | TGAACGGTTGTTGTTAAATG+AGG | - | chr1.4:14176895-14176914 | None:intergenic | 35.0% |
! | TTTTGTGTCTGTGTAGATAC+CGG | - | chr1.4:14177793-14177812 | None:intergenic | 35.0% |
!! | TGAGATATTTTTGCGTACGA+TGG | - | chr1.4:14178293-14178312 | None:intergenic | 35.0% |
ACATCATCACTTGACGTTAG+TGG | - | chr1.4:14177868-14177887 | None:intergenic | 40.0% | |
ATATAATATGGGCCATGGGT+AGG | + | chr1.4:14178423-14178442 | MS.gene32331:CDS | 40.0% | |
ATTTAGTCCGTTTGCAAGCA+GGG | + | chr1.4:14178129-14178148 | MS.gene32331:intron | 40.0% | |
GAGAGTCGAAAGATCATTAG+TGG | + | chr1.4:14178395-14178414 | MS.gene32331:CDS | 40.0% | |
GGTGGGTGTCAAAATAAACA+AGG | + | chr1.4:14177702-14177721 | MS.gene32331:intron | 40.0% | |
TCTAATGGTGTGAAGCTAAC+CGG | + | chr1.4:14177771-14177790 | MS.gene32331:intron | 40.0% | |
TTAGGGTTTGAGGACTATGT+TGG | + | chr1.4:14178446-14178465 | MS.gene32331:CDS | 40.0% | |
! | ACACAATTGTGTTGTTGCCT+TGG | - | chr1.4:14178321-14178340 | None:intergenic | 40.0% |
! | TGTAGTCACCTTTTACATGC+TGG | + | chr1.4:14177887-14177906 | MS.gene32331:intron | 40.0% |
!! | CACAGTTCCTCATTTGTTGT+TGG | - | chr1.4:14178227-14178246 | None:intergenic | 40.0% |
!! | TTTTGGAGGAGAAGAGATAG+AGG | - | chr1.4:14178473-14178492 | None:intergenic | 40.0% |
AACCATGAGGCTCAATTCAG+TGG | + | chr1.4:14178500-14178519 | MS.gene32331:CDS | 45.0% | |
AACTGCTCGTGGATTCAACA+TGG | + | chr1.4:14178529-14178548 | MS.gene32331:CDS | 45.0% | |
CAGAGCTTGATTGTGCTGAA+CGG | - | chr1.4:14176911-14176930 | None:intergenic | 45.0% | |
CCAAAACTATCGCAACCATG+AGG | + | chr1.4:14178487-14178506 | MS.gene32331:CDS | 45.0% | |
CTCGTGGATTCAACATGGAT+GGG | + | chr1.4:14178534-14178553 | MS.gene32331:CDS | 45.0% | |
GAGCAGATCTGCGTATACAA+TGG | + | chr1.4:14177522-14177541 | MS.gene32331:intron | 45.0% | |
GATTTAGTCCGTTTGCAAGC+AGG | + | chr1.4:14178128-14178147 | MS.gene32331:intron | 45.0% | |
GTGGCAAACCAGCATGTAAA+AGG | - | chr1.4:14177898-14177917 | None:intergenic | 45.0% | |
TGGATTCAACATGGATGGGT+CGG | + | chr1.4:14178538-14178557 | MS.gene32331:CDS | 45.0% | |
! | CCTCATGGTTGCGATAGTTT+TGG | - | chr1.4:14178490-14178509 | None:intergenic | 45.0% |
! | GCATCAATGTTTTCGGTCCT+TGG | - | chr1.4:14178179-14178198 | None:intergenic | 45.0% |
!!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1.4:14178487-14178506 | None:intergenic | 45.0% |
!! | AATAATAAATTAATTATTTG+AGG | + | chr1.4:14177630-14177649 | MS.gene32331:intron | 5.0% |
ATATGGGCCATGGGTAGGTT+AGG | + | chr1.4:14178428-14178447 | MS.gene32331:CDS | 50.0% | |
ATGGACTCCCTGCTTGCAAA+CGG | - | chr1.4:14178139-14178158 | None:intergenic | 50.0% | |
CATGGGTAGGTTAGGGTTTG+AGG | + | chr1.4:14178436-14178455 | MS.gene32331:CDS | 50.0% | |
CGTTCAGCACAATCAAGCTC+TGG | + | chr1.4:14176909-14176928 | MS.gene32331:CDS | 50.0% | |
CTCAAACCCTAACCTACCCA+TGG | - | chr1.4:14178438-14178457 | None:intergenic | 50.0% | |
GCATTTCTCAACAGCCTCAG+TGG | - | chr1.4:14178369-14178388 | None:intergenic | 50.0% | |
GCTCGTGGATTCAACATGGA+TGG | + | chr1.4:14178533-14178552 | MS.gene32331:CDS | 50.0% | |
GGATTCAACATGGATGGGTC+GGG | + | chr1.4:14178539-14178558 | MS.gene32331:CDS | 50.0% | |
TATGGGCCATGGGTAGGTTA+GGG | + | chr1.4:14178429-14178448 | MS.gene32331:CDS | 50.0% | |
TGCCACTGAATTGAGCCTCA+TGG | - | chr1.4:14178505-14178524 | None:intergenic | 50.0% | |
CATGGGCATCATCACCACTG+AGG | + | chr1.4:14178352-14178371 | MS.gene32331:CDS | 55.0% | |
AACATGGATGGGTCGGGTGC+TGG | + | chr1.4:14178545-14178564 | MS.gene32331:CDS | 60.0% | |
AGTGGCACGTCAACTGCTCG+TGG | + | chr1.4:14178518-14178537 | MS.gene32331:CDS | 60.0% | |
GGTGGCTCGAGCAGTGGTAA+TGG | + | chr1.4:14178566-14178585 | MS.gene32331:CDS | 60.0% | |
!! | ATGGATGGGTCGGGTGCTGG+TGG | + | chr1.4:14178548-14178567 | MS.gene32331:CDS | 65.0% |
!! | GGTGCTGGTGGCTCGAGCAG+TGG | + | chr1.4:14178560-14178579 | MS.gene32331:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 14176876 | 14178598 | 14176876 | ID=MS.gene32331 |
chr1.4 | mRNA | 14176876 | 14178598 | 14176876 | ID=MS.gene32331.t1;Parent=MS.gene32331 |
chr1.4 | exon | 14176876 | 14176930 | 14176876 | ID=MS.gene32331.t1.exon1;Parent=MS.gene32331.t1 |
chr1.4 | CDS | 14176876 | 14176930 | 14176876 | ID=cds.MS.gene32331.t1;Parent=MS.gene32331.t1 |
chr1.4 | exon | 14178135 | 14178598 | 14178135 | ID=MS.gene32331.t1.exon2;Parent=MS.gene32331.t1 |
chr1.4 | CDS | 14178135 | 14178598 | 14178135 | ID=cds.MS.gene32331.t1;Parent=MS.gene32331.t1 |
Gene Sequence |
Protein sequence |