Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32332.t1 | XP_013466407.1 | 79 | 124 | 17 | 1 | 20 | 134 | 49 | 172 | 1.30E-44 | 189.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32332.t1 | O23310 | 59.3 | 91 | 37 | 0 | 21 | 111 | 19 | 109 | 6.4e-24 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32332.t1 | A0A072VGA7 | 79.0 | 124 | 17 | 1 | 20 | 134 | 49 | 172 | 9.5e-45 | 189.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32332.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32332.t1 | MTR_1g029070 | 79.091 | 110 | 14 | 1 | 20 | 120 | 49 | 158 | 6.02e-59 | 180 |
| MS.gene32332.t1 | MTR_8g091720 | 54.286 | 105 | 38 | 1 | 17 | 111 | 12 | 116 | 1.57e-34 | 119 |
| MS.gene32332.t1 | MTR_1g072790 | 49.565 | 115 | 54 | 1 | 19 | 133 | 25 | 135 | 2.37e-34 | 117 |
| MS.gene32332.t1 | MTR_7g061270 | 48.624 | 109 | 54 | 1 | 22 | 130 | 25 | 131 | 4.37e-33 | 114 |
| MS.gene32332.t1 | MTR_7g100650 | 48.624 | 109 | 54 | 1 | 22 | 130 | 25 | 131 | 4.88e-33 | 114 |
| MS.gene32332.t1 | MTR_5g095740 | 55.914 | 93 | 40 | 1 | 19 | 111 | 20 | 111 | 1.45e-32 | 113 |
| MS.gene32332.t1 | MTR_1g039040 | 53.333 | 90 | 42 | 0 | 22 | 111 | 5 | 94 | 2.16e-32 | 113 |
| MS.gene32332.t1 | MTR_2g026710 | 55.556 | 90 | 40 | 0 | 22 | 111 | 16 | 105 | 4.03e-32 | 112 |
| MS.gene32332.t1 | MTR_3g058980 | 50.459 | 109 | 51 | 2 | 3 | 111 | 10 | 115 | 4.81e-32 | 112 |
| MS.gene32332.t1 | MTR_4g133938 | 57.143 | 84 | 36 | 0 | 28 | 111 | 24 | 107 | 6.27e-30 | 105 |
| MS.gene32332.t1 | MTR_4g133952 | 50.000 | 90 | 45 | 0 | 22 | 111 | 57 | 146 | 4.11e-29 | 106 |
| MS.gene32332.t1 | MTR_8g093920 | 52.941 | 85 | 40 | 0 | 28 | 112 | 45 | 129 | 8.13e-29 | 104 |
| MS.gene32332.t1 | MTR_1g088860 | 44.762 | 105 | 58 | 0 | 7 | 111 | 20 | 124 | 4.19e-28 | 102 |
| MS.gene32332.t1 | MTR_4g119500 | 50.000 | 84 | 42 | 0 | 28 | 111 | 27 | 110 | 1.14e-27 | 99.4 |
| MS.gene32332.t1 | MTR_0392s0020 | 48.810 | 84 | 43 | 0 | 28 | 111 | 23 | 106 | 7.12e-27 | 97.8 |
| MS.gene32332.t1 | MTR_1g028480 | 52.326 | 86 | 32 | 1 | 54 | 130 | 20 | 105 | 3.55e-25 | 92.4 |
| MS.gene32332.t1 | MTR_1g029100 | 45.000 | 80 | 44 | 0 | 24 | 103 | 3 | 82 | 3.46e-23 | 86.7 |
| MS.gene32332.t1 | MTR_1g083070 | 41.667 | 84 | 49 | 0 | 28 | 111 | 9 | 92 | 1.63e-21 | 83.6 |
| MS.gene32332.t1 | MTR_5g095900 | 35.632 | 87 | 56 | 0 | 28 | 114 | 21 | 107 | 5.11e-14 | 65.5 |
| MS.gene32332.t1 | MTR_2g056000 | 24.219 | 128 | 92 | 1 | 6 | 128 | 19 | 146 | 1.80e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32332.t1 | AT4G14540 | 58.065 | 93 | 39 | 0 | 19 | 111 | 17 | 109 | 4.29e-35 | 119 |
| MS.gene32332.t1 | AT2G38880 | 50.893 | 112 | 51 | 2 | 18 | 129 | 16 | 123 | 7.30e-34 | 115 |
| MS.gene32332.t1 | AT2G38880 | 50.893 | 112 | 53 | 2 | 18 | 129 | 16 | 125 | 7.93e-34 | 115 |
| MS.gene32332.t1 | AT2G38880 | 50.893 | 112 | 53 | 2 | 18 | 129 | 16 | 125 | 8.81e-34 | 115 |
| MS.gene32332.t1 | AT2G38880 | 50.893 | 112 | 53 | 2 | 18 | 129 | 16 | 125 | 8.81e-34 | 115 |
| MS.gene32332.t1 | AT2G38880 | 50.893 | 112 | 53 | 2 | 18 | 129 | 16 | 125 | 8.81e-34 | 115 |
| MS.gene32332.t1 | AT5G47640 | 56.383 | 94 | 40 | 1 | 19 | 112 | 24 | 116 | 3.47e-33 | 115 |
| MS.gene32332.t1 | AT3G53340 | 47.321 | 112 | 59 | 0 | 22 | 133 | 28 | 139 | 8.94e-33 | 114 |
| MS.gene32332.t1 | AT3G53340 | 47.321 | 112 | 59 | 0 | 22 | 133 | 28 | 139 | 8.94e-33 | 114 |
| MS.gene32332.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 3.55e-32 | 110 |
| MS.gene32332.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 21 | 111 | 27 | 117 | 1.06e-31 | 109 |
| MS.gene32332.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 1.14e-31 | 110 |
| MS.gene32332.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 1.14e-31 | 110 |
| MS.gene32332.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 21 | 133 | 28 | 146 | 1.20e-31 | 110 |
| MS.gene32332.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 21 | 133 | 28 | 146 | 1.20e-31 | 110 |
| MS.gene32332.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 21 | 133 | 28 | 146 | 1.20e-31 | 110 |
| MS.gene32332.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 1.95e-31 | 109 |
| MS.gene32332.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 1.95e-31 | 109 |
| MS.gene32332.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 1.95e-31 | 109 |
| MS.gene32332.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 21 | 111 | 27 | 117 | 9.64e-31 | 107 |
| MS.gene32332.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 21 | 111 | 27 | 117 | 9.64e-31 | 107 |
| MS.gene32332.t1 | AT2G13570 | 55.294 | 85 | 38 | 0 | 28 | 112 | 41 | 125 | 9.49e-30 | 107 |
| MS.gene32332.t1 | AT1G21970 | 50.000 | 90 | 45 | 0 | 22 | 111 | 58 | 147 | 1.08e-29 | 107 |
| MS.gene32332.t1 | AT5G47670 | 50.000 | 90 | 45 | 0 | 22 | 111 | 28 | 117 | 1.90e-29 | 106 |
| MS.gene32332.t1 | AT5G47670 | 50.000 | 90 | 45 | 0 | 22 | 111 | 57 | 146 | 3.07e-29 | 106 |
| MS.gene32332.t1 | AT5G47670 | 50.000 | 90 | 45 | 0 | 22 | 111 | 57 | 146 | 3.07e-29 | 106 |
| MS.gene32332.t1 | AT2G47810 | 48.810 | 84 | 43 | 0 | 28 | 111 | 56 | 139 | 1.27e-26 | 97.8 |
| MS.gene32332.t1 | AT1G09030 | 44.944 | 89 | 48 | 1 | 24 | 111 | 3 | 91 | 1.14e-23 | 89.7 |
| MS.gene32332.t1 | AT5G08190 | 30.097 | 103 | 69 | 1 | 28 | 130 | 16 | 115 | 3.03e-11 | 58.2 |
Find 32 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTATCGCAACCATGCTTA+TGG | 0.229358 | 1.4:+14165614 | MS.gene32332:CDS |
| GATTCTTGTCAAATTTCTAA+TGG | 0.267704 | 1.4:-14165375 | None:intergenic |
| TTAGTGGTGAAGATTTAATA+TGG | 0.318108 | 1.4:+14165534 | MS.gene32332:CDS |
| AAGCATGGTTGCGATAGTTT+TGG | 0.320197 | 1.4:-14165610 | None:intergenic |
| ATATGGGCCATGGGTAGGTT+AGG | 0.325129 | 1.4:+14165551 | MS.gene32332:CDS |
| CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1.4:+14165559 | MS.gene32332:CDS |
| CGCAGTTCGTCATTCCTTGT+TGG | 0.350817 | 1.4:-14165347 | None:intergenic |
| ATTCTTGTCAAATTTCTAAT+GGG | 0.396632 | 1.4:-14165374 | None:intergenic |
| ACTATCGCAACCATGCTTAT+GGG | 0.422034 | 1.4:+14165615 | MS.gene32332:CDS |
| TATGGGCCATGGGTAGGTTA+GGG | 0.451016 | 1.4:+14165552 | MS.gene32332:CDS |
| GATGTGTGTGTCTGAATTCA+TGG | 0.465046 | 1.4:+14165457 | MS.gene32332:CDS |
| GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1.4:+14165518 | MS.gene32332:CDS |
| TAGTGGTGAAGATTTAATAT+GGG | 0.494669 | 1.4:+14165535 | MS.gene32332:CDS |
| AAGGATGGATCAGGTGTTAG+TGG | 0.502344 | 1.4:+14165644 | MS.gene32332:CDS |
| GGGTTCAACAAGGATGGATC+AGG | 0.507582 | 1.4:+14165635 | MS.gene32332:CDS |
| AATTGCATGCATATCAATGT+TGG | 0.519524 | 1.4:-14165685 | None:intergenic |
| TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1.4:+14165569 | MS.gene32332:CDS |
| CGTTCATCACAATCAAGCTC+TGG | 0.531661 | 1.4:+14163886 | MS.gene32332:CDS |
| TGAAGATTTAATATGGGCCA+TGG | 0.535798 | 1.4:+14165541 | MS.gene32332:CDS |
| GCTTATGGGTTCAACAAGGA+TGG | 0.560755 | 1.4:+14165629 | MS.gene32332:CDS |
| AGTGGCTCGAGCAGTGGCAA+TGG | 0.570893 | 1.4:+14165662 | MS.gene32332:CDS |
| ATTTAATATGGGCCATGGGT+AGG | 0.572332 | 1.4:+14165546 | MS.gene32332:CDS |
| TGAACGGTTGTTGTTAAATG+AGG | 0.576425 | 1.4:-14163869 | None:intergenic |
| GGTGTTAGTGGCTCGAGCAG+TGG | 0.597319 | 1.4:+14165656 | MS.gene32332:CDS |
| GAAGATTTAATATGGGCCAT+GGG | 0.602532 | 1.4:+14165542 | MS.gene32332:CDS |
| CCTTGTTGAACCCATAAGCA+TGG | 0.602629 | 1.4:-14165625 | None:intergenic |
| CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1.4:-14165558 | None:intergenic |
| TGCAGGTAGGGAGTCCAACA+AGG | 0.616172 | 1.4:+14165333 | MS.gene32332:intron |
| CCATGCTTATGGGTTCAACA+AGG | 0.642059 | 1.4:+14165625 | MS.gene32332:CDS |
| CAGAGCTTGATTGTGATGAA+CGG | 0.644080 | 1.4:-14163885 | None:intergenic |
| ATGTGTGTGTCTGAATTCAT+GGG | 0.648992 | 1.4:+14165458 | MS.gene32332:CDS |
| CATGGGCATCATCATCACTG+AGG | 0.744966 | 1.4:+14165475 | MS.gene32332:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATTAATATAAATA+AGG | + | chr1.4:14165160-14165179 | MS.gene32332:intron | 0.0% |
| !! | AATTAAATTAAAACATGTAA+TGG | - | chr1.4:14165203-14165222 | None:intergenic | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+AGG | + | chr1.4:14164686-14164705 | MS.gene32332:intron | 10.0% |
| !! | AGAGAGTAATTATATTTAAA+AGG | + | chr1.4:14164029-14164048 | MS.gene32332:intron | 15.0% |
| !!! | TGAATGAAATTTTGATTTAA+GGG | + | chr1.4:14164372-14164391 | MS.gene32332:intron | 15.0% |
| !!! | TTGAATGAAATTTTGATTTA+AGG | + | chr1.4:14164371-14164390 | MS.gene32332:intron | 15.0% |
| !! | AAAAAATTGAAATCTTAGCA+AGG | - | chr1.4:14164655-14164674 | None:intergenic | 20.0% |
| !! | ATTCTTGTCAAATTTCTAAT+GGG | - | chr1.4:14165377-14165396 | None:intergenic | 20.0% |
| !!! | AACAAAACTGAAGTATTTAA+AGG | - | chr1.4:14164822-14164841 | None:intergenic | 20.0% |
| !!! | ACAAAACTGAAGTATTTAAA+GGG | - | chr1.4:14164821-14164840 | None:intergenic | 20.0% |
| !!! | CTAAAAAAAATTTGAGATCT+TGG | + | chr1.4:14164580-14164599 | MS.gene32332:intron | 20.0% |
| !!! | CTTTTCTTCTTTTTAATCTA+AGG | - | chr1.4:14165019-14165038 | None:intergenic | 20.0% |
| !!! | GAAATTATACGTTACATTTT+CGG | + | chr1.4:14165038-14165057 | MS.gene32332:intron | 20.0% |
| !!! | GAATGAAATTTTGATTTAAG+GGG | + | chr1.4:14164373-14164392 | MS.gene32332:intron | 20.0% |
| !!! | TGTGTATATATTGTTTTGAA+TGG | + | chr1.4:14164117-14164136 | MS.gene32332:intron | 20.0% |
| ! | AAAAATATCTCAAGATGCTA+AGG | + | chr1.4:14165424-14165443 | MS.gene32332:CDS | 25.0% |
| ! | AATAAAAGTGAGAGAAAAGT+TGG | + | chr1.4:14164775-14164794 | MS.gene32332:intron | 25.0% |
| ! | ATAAAAGTGAGAGAAAAGTT+GGG | + | chr1.4:14164776-14164795 | MS.gene32332:intron | 25.0% |
| ! | GATTCTTGTCAAATTTCTAA+TGG | - | chr1.4:14165378-14165397 | None:intergenic | 25.0% |
| ! | GGATGCCAAAAAAAAAAATA+TGG | + | chr1.4:14164394-14164413 | MS.gene32332:intron | 25.0% |
| ! | TAGTGGTGAAGATTTAATAT+GGG | + | chr1.4:14165535-14165554 | MS.gene32332:CDS | 25.0% |
| ! | TGGGTGAAAAAAATAAACAA+GGG | + | chr1.4:14164795-14164814 | MS.gene32332:intron | 25.0% |
| ! | TTAGTGGTGAAGATTTAATA+TGG | + | chr1.4:14165534-14165553 | MS.gene32332:CDS | 25.0% |
| ! | TTGGGTGAAAAAAATAAACA+AGG | + | chr1.4:14164794-14164813 | MS.gene32332:intron | 25.0% |
| !! | GTGTGAGTGTTATAAATTTT+GGG | + | chr1.4:14164538-14164557 | MS.gene32332:intron | 25.0% |
| !! | TGTGAGTGTTATAAATTTTG+GGG | + | chr1.4:14164539-14164558 | MS.gene32332:intron | 25.0% |
| !! | TGTGTGAGTGTTATAAATTT+TGG | + | chr1.4:14164537-14164556 | MS.gene32332:intron | 25.0% |
| !! | TTCTTCTTTTTAATCTAAGG+TGG | - | chr1.4:14165016-14165035 | None:intergenic | 25.0% |
| !!! | GGGATCCATATTTTTTTTTT+TGG | - | chr1.4:14164402-14164421 | None:intergenic | 25.0% |
| !!! | TTGTTAACCATTTTTGACAT+GGG | + | chr1.4:14164334-14164353 | MS.gene32332:intron | 25.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1.4:14164567-14164586 | None:intergenic | 25.0% |
| AAAGAGATAGAGGTCAAATA+TGG | - | chr1.4:14164423-14164442 | None:intergenic | 30.0% | |
| AAATTGAGAGAAAGAGATAG+AGG | - | chr1.4:14164433-14164452 | None:intergenic | 30.0% | |
| AAGAGATAGAGGTCAAATAT+GGG | - | chr1.4:14164422-14164441 | None:intergenic | 30.0% | |
| AATCTAAGAGAAGCAGTTAA+GGG | - | chr1.4:14164254-14164273 | None:intergenic | 30.0% | |
| ACCATTAGATAGATCAACAA+TGG | - | chr1.4:14164852-14164871 | None:intergenic | 30.0% | |
| AGAAAAGAGAGATCTAACTT+GGG | + | chr1.4:14164294-14164313 | MS.gene32332:intron | 30.0% | |
| TCCATTGTTGATCTATCTAA+TGG | + | chr1.4:14164848-14164867 | MS.gene32332:intron | 30.0% | |
| ! | CCTTCTTTTTATTGCATAGA+GGG | - | chr1.4:14165089-14165108 | None:intergenic | 30.0% |
| ! | CTTAACTATGTGCTTCTTTT+TGG | + | chr1.4:14165298-14165317 | MS.gene32332:intron | 30.0% |
| ! | GTATTTTCCCATGTCAAAAA+TGG | - | chr1.4:14164344-14164363 | None:intergenic | 30.0% |
| ! | TCCTTCTTTTTATTGCATAG+AGG | - | chr1.4:14165090-14165109 | None:intergenic | 30.0% |
| !! | CTTGTTAACCATTTTTGACA+TGG | + | chr1.4:14164333-14164352 | MS.gene32332:intron | 30.0% |
| ATCTAAGAGAAGCAGTTAAG+GGG | - | chr1.4:14164253-14164272 | None:intergenic | 35.0% | |
| ATGTGTGTGTCTGAATTCAT+GGG | + | chr1.4:14165458-14165477 | MS.gene32332:CDS | 35.0% | |
| CAGAAAAGAGAGATCTAACT+TGG | + | chr1.4:14164293-14164312 | MS.gene32332:intron | 35.0% | |
| CCCTCTATGCAATAAAAAGA+AGG | + | chr1.4:14165086-14165105 | MS.gene32332:intron | 35.0% | |
| GAAGATTTAATATGGGCCAT+GGG | + | chr1.4:14165542-14165561 | MS.gene32332:CDS | 35.0% | |
| GAATCTAAGAGAAGCAGTTA+AGG | - | chr1.4:14164255-14164274 | None:intergenic | 35.0% | |
| TGAAGATTTAATATGGGCCA+TGG | + | chr1.4:14165541-14165560 | MS.gene32332:CDS | 35.0% | |
| ! | AGTTAGATCTCTCTTTTCTG+AGG | - | chr1.4:14164293-14164312 | None:intergenic | 35.0% |
| ! | TGAACGGTTGTTGTTAAATG+AGG | - | chr1.4:14163872-14163891 | None:intergenic | 35.0% |
| !! | TGAGATATTTTTGCGTACGA+TGG | - | chr1.4:14165416-14165435 | None:intergenic | 35.0% |
| AACTATCGCAACCATGCTTA+TGG | + | chr1.4:14165614-14165633 | MS.gene32332:CDS | 40.0% | |
| ACTATCGCAACCATGCTTAT+GGG | + | chr1.4:14165615-14165634 | MS.gene32332:CDS | 40.0% | |
| ATTTAATATGGGCCATGGGT+AGG | + | chr1.4:14165546-14165565 | MS.gene32332:CDS | 40.0% | |
| ATTTAGTCCCTTTGCAGGTA+GGG | + | chr1.4:14165321-14165340 | MS.gene32332:intron | 40.0% | |
| CAGAGCTTGATTGTGATGAA+CGG | - | chr1.4:14163888-14163907 | None:intergenic | 40.0% | |
| CTGCTTCTCTTAGATTCTCA+AGG | + | chr1.4:14164258-14164277 | MS.gene32332:intron | 40.0% | |
| GAGAGTCGAAAGATCATTAG+TGG | + | chr1.4:14165518-14165537 | MS.gene32332:CDS | 40.0% | |
| GAGCAGATCTTCGTATACAA+TGG | + | chr1.4:14164618-14164637 | MS.gene32332:intron | 40.0% | |
| GATGTGTGTGTCTGAATTCA+TGG | + | chr1.4:14165457-14165476 | MS.gene32332:CDS | 40.0% | |
| TCTAAGAGAAGCAGTTAAGG+GGG | - | chr1.4:14164252-14164271 | None:intergenic | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | + | chr1.4:14165569-14165588 | MS.gene32332:CDS | 40.0% | |
| TTTGGATTTAGTCCCTTTGC+AGG | + | chr1.4:14165316-14165335 | MS.gene32332:intron | 40.0% | |
| ! | AAGCATGGTTGCGATAGTTT+TGG | - | chr1.4:14165613-14165632 | None:intergenic | 40.0% |
| ! | TGTAGTCACCTTTTACAAGC+TGG | + | chr1.4:14164986-14165005 | MS.gene32332:intron | 40.0% |
| !! | TTTTGGAGGAGAACAGATAG+AGG | - | chr1.4:14165596-14165615 | None:intergenic | 40.0% |
| AAGGATGGATCAGGTGTTAG+TGG | + | chr1.4:14165644-14165663 | MS.gene32332:CDS | 45.0% | |
| CATGCATCACATGACGTTAG+TGG | - | chr1.4:14164966-14164985 | None:intergenic | 45.0% | |
| CCATGCTTATGGGTTCAACA+AGG | + | chr1.4:14165625-14165644 | MS.gene32332:CDS | 45.0% | |
| CCTTGTTGAACCCATAAGCA+TGG | - | chr1.4:14165628-14165647 | None:intergenic | 45.0% | |
| CGTTCATCACAATCAAGCTC+TGG | + | chr1.4:14163886-14163905 | MS.gene32332:CDS | 45.0% | |
| CTAAGAGAAGCAGTTAAGGG+GGG | - | chr1.4:14164251-14164270 | None:intergenic | 45.0% | |
| GATTTAGTCCCTTTGCAGGT+AGG | + | chr1.4:14165320-14165339 | MS.gene32332:intron | 45.0% | |
| GCTTATGGGTTCAACAAGGA+TGG | + | chr1.4:14165629-14165648 | MS.gene32332:CDS | 45.0% | |
| GTGGCAAACCAGCTTGTAAA+AGG | - | chr1.4:14164997-14165016 | None:intergenic | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1.4:14165610-14165629 | None:intergenic | 45.0% |
| !! | TTATAATAATAAATTAATCA+AGG | + | chr1.4:14164721-14164740 | MS.gene32332:intron | 5.0% |
| !!! | TTTTATTGAAAATAATTTTA+AGG | - | chr1.4:14165229-14165248 | None:intergenic | 5.0% |
| ATATGGGCCATGGGTAGGTT+AGG | + | chr1.4:14165551-14165570 | MS.gene32332:CDS | 50.0% | |
| CATGGGCATCATCATCACTG+AGG | + | chr1.4:14165475-14165494 | MS.gene32332:CDS | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | + | chr1.4:14165559-14165578 | MS.gene32332:CDS | 50.0% | |
| CGCAGTTCGTCATTCCTTGT+TGG | - | chr1.4:14165350-14165369 | None:intergenic | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | - | chr1.4:14165561-14165580 | None:intergenic | 50.0% | |
| GGGTTCAACAAGGATGGATC+AGG | + | chr1.4:14165635-14165654 | MS.gene32332:CDS | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | + | chr1.4:14165552-14165571 | MS.gene32332:CDS | 50.0% | |
| TTGGACTCCCTACCTGCAAA+GGG | - | chr1.4:14165331-14165350 | None:intergenic | 50.0% | |
| GTTGGACTCCCTACCTGCAA+AGG | - | chr1.4:14165332-14165351 | None:intergenic | 55.0% | |
| TGCAGGTAGGGAGTCCAACA+AGG | + | chr1.4:14165333-14165352 | MS.gene32332:intron | 55.0% | |
| AGTGGCTCGAGCAGTGGCAA+TGG | + | chr1.4:14165662-14165681 | MS.gene32332:CDS | 60.0% | |
| GGTGTTAGTGGCTCGAGCAG+TGG | + | chr1.4:14165656-14165675 | MS.gene32332:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 14163860 | 14165694 | 14163860 | ID=MS.gene32332 |
| chr1.4 | mRNA | 14163860 | 14165694 | 14163860 | ID=MS.gene32332.t1;Parent=MS.gene32332 |
| chr1.4 | exon | 14163860 | 14163907 | 14163860 | ID=MS.gene32332.t1.exon1;Parent=MS.gene32332.t1 |
| chr1.4 | CDS | 14163860 | 14163907 | 14163860 | ID=cds.MS.gene32332.t1;Parent=MS.gene32332.t1 |
| chr1.4 | exon | 14165338 | 14165694 | 14165338 | ID=MS.gene32332.t1.exon2;Parent=MS.gene32332.t1 |
| chr1.4 | CDS | 14165338 | 14165694 | 14165338 | ID=cds.MS.gene32332.t1;Parent=MS.gene32332.t1 |
| Gene Sequence |
| Protein sequence |
