Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32549.t1 | XP_024639183.1 | 85.1 | 415 | 37 | 4 | 1 | 395 | 1 | 410 | 3.30E-192 | 681 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32549.t1 | Q9LTT3 | 24.7 | 231 | 117 | 7 | 68 | 243 | 70 | 298 | 9.4e-07 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32549.t1 | G7KBS3 | 84.7 | 417 | 37 | 4 | 1 | 395 | 1 | 412 | 4.0e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32549.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32549.t1 | MTR_5g080030 | 84.856 | 416 | 36 | 4 | 1 | 394 | 1 | 411 | 0.0 | 707 |
| MS.gene32549.t1 | MTR_5g095070 | 59.751 | 241 | 66 | 4 | 43 | 263 | 34 | 263 | 4.14e-83 | 255 |
| MS.gene32549.t1 | MTR_1g084150 | 39.643 | 280 | 98 | 4 | 136 | 393 | 1 | 231 | 6.86e-51 | 171 |
| MS.gene32549.t1 | MTR_4g015240 | 49.254 | 67 | 29 | 1 | 318 | 384 | 39 | 100 | 2.75e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCTTCAGTGCTCTTT+TGG | 0.157665 | 5.1:-62241539 | None:intergenic |
| CACTAGTTTATCTCAATTAA+TGG | 0.164628 | 5.1:+62240191 | MS.gene32549:intron |
| ATTCAAATCACCTGGGAAAA+AGG | 0.184616 | 5.1:-62241697 | None:intergenic |
| AAAGCTGATCATCAGTTTAA+AGG | 0.190474 | 5.1:+62241295 | MS.gene32549:CDS |
| GTTCCTTATGAAAATGAAAA+TGG | 0.200069 | 5.1:+62238882 | MS.gene32549:CDS |
| TCGTAAGCTCACTGAGCTTT+TGG | 0.297529 | 5.1:+62238983 | MS.gene32549:CDS |
| TTATATCCACTCTGTCCTAT+TGG | 0.357025 | 5.1:-62240903 | None:intergenic |
| AGAGGAAAGCATGAAGATAA+AGG | 0.358251 | 5.1:+62241494 | MS.gene32549:CDS |
| CGTTCGTTAGATTTGCCAAC+TGG | 0.361646 | 5.1:+62241726 | MS.gene32549:CDS |
| CTCTCAGTGAGGATATAATA+TGG | 0.364315 | 5.1:-62238954 | None:intergenic |
| AGTTGTTTCTGCTCTAAAAC+TGG | 0.365684 | 5.1:+62239953 | MS.gene32549:CDS |
| TTCATGCTTTCCTCTTCATA+TGG | 0.373376 | 5.1:-62241486 | None:intergenic |
| TTCACGCTTGCCTCTTCATA+TGG | 0.385956 | 5.1:-62241151 | None:intergenic |
| AGGTTGATCAAGAAAAGAAA+TGG | 0.402611 | 5.1:+62239925 | MS.gene32549:intron |
| AGAGGCAAGCGTGAAGATAA+AGG | 0.407513 | 5.1:+62241159 | MS.gene32549:CDS |
| GTTGTCAGACAAGGAGAAAC+AGG | 0.408256 | 5.1:+62241022 | MS.gene32549:CDS |
| CCTCTGTCAAACTACTCTTT+TGG | 0.416635 | 5.1:+62241618 | MS.gene32549:CDS |
| TTAATTTCATTAATGGAAGA+AGG | 0.420089 | 5.1:+62238834 | None:intergenic |
| GACTACTCTAGTCAAATTAC+AGG | 0.434649 | 5.1:+62240252 | MS.gene32549:CDS |
| TCGTGACCTCCAAGTAAAAC+AGG | 0.439872 | 5.1:-62239520 | None:intergenic |
| CGATAATCATTCAAATCACC+TGG | 0.440231 | 5.1:-62241705 | None:intergenic |
| TTGAGACATTGTACTTCTAC+AGG | 0.444314 | 5.1:+62240039 | MS.gene32549:CDS |
| AGGAAAGGAATTAGTAGTGA+TGG | 0.453771 | 5.1:+62238854 | MS.gene32549:CDS |
| AGAACAAAGAAAAGAAGAAA+CGG | 0.457756 | 5.1:+62240871 | MS.gene32549:CDS |
| TACTTGGAGGTCACGAAAAG+AGG | 0.458176 | 5.1:+62239527 | MS.gene32549:CDS |
| TAGTAGTCACCACACACAAT+AGG | 0.458403 | 5.1:-62241579 | None:intergenic |
| TTCCTTATGAAAATGAAAAT+GGG | 0.467050 | 5.1:+62238883 | MS.gene32549:CDS |
| AAACGGAGAGGTGCTCCAAT+AGG | 0.474962 | 5.1:+62240888 | MS.gene32549:CDS |
| TTCATTAATGGAAGAAGGAA+AGG | 0.479210 | 5.1:+62238839 | None:intergenic |
| TATGCACTCTTCTGTCCCCT+TGG | 0.481011 | 5.1:-62241238 | None:intergenic |
| TTCATCAATGGAAGAAGCAA+AGG | 0.491657 | 5.1:+62238911 | MS.gene32549:CDS |
| GGTTGATCAAGAAAAGAAAT+GGG | 0.491923 | 5.1:+62239926 | MS.gene32549:intron |
| AGAAGCAAAGGAATTAGAGA+TGG | 0.514965 | 5.1:+62238923 | MS.gene32549:CDS |
| AGTAAAACAGGTACAAGTCA+AGG | 0.532503 | 5.1:-62239508 | None:intergenic |
| AAATCACGGCTATTGATGCT+TGG | 0.536227 | 5.1:+62241326 | MS.gene32549:CDS |
| TAGAGATGGCTATTGATGCT+TGG | 0.538363 | 5.1:+62240994 | MS.gene32549:CDS |
| TCGACTTAAAGCTTATCATC+AGG | 0.545141 | 5.1:+62240950 | MS.gene32549:CDS |
| CGACAACAAGTATAGTCACT+CGG | 0.548231 | 5.1:-62241754 | None:intergenic |
| GTCTAGCGCATTCATGCTTG+AGG | 0.557923 | 5.1:-62241270 | None:intergenic |
| GTTCGTTAGATTTGCCAACT+GGG | 0.558967 | 5.1:+62241727 | MS.gene32549:CDS |
| AACATGAGATTGAATCCAGA+AGG | 0.564550 | 5.1:-62239008 | None:intergenic |
| GTTTCTGCTCTAAAACTGGA+AGG | 0.575106 | 5.1:+62239957 | MS.gene32549:CDS |
| TTTCATGTAGCCATATGAAG+AGG | 0.580743 | 5.1:+62241141 | MS.gene32549:intron |
| AGTCACTCGGGTTCCCCAGT+TGG | 0.582592 | 5.1:-62241741 | None:intergenic |
| ATATAATATATTCCTCAAGC+AGG | 0.589592 | 5.1:+62240920 | MS.gene32549:CDS |
| GTCGAGCACACTCCTGCTTG+AGG | 0.592986 | 5.1:-62240932 | None:intergenic |
| GAGCACTGAAGATCTTGAGA+GGG | 0.594444 | 5.1:+62241545 | MS.gene32549:CDS |
| AAAGAAAAGAAGAAACATAG+AGG | 0.596397 | 5.1:+62241211 | MS.gene32549:CDS |
| AGAGCACTGAAGATCTTGAG+AGG | 0.596789 | 5.1:+62241544 | MS.gene32549:CDS |
| GAAACATAGAGGTGTTCCAA+GGG | 0.597227 | 5.1:+62241222 | MS.gene32549:CDS |
| AGAAACATAGAGGTGTTCCA+AGG | 0.610697 | 5.1:+62241221 | MS.gene32549:CDS |
| GTAAAACAGGTACAAGTCAA+GGG | 0.610799 | 5.1:-62239507 | None:intergenic |
| TTTCATGTAGCCATATGAAG+AGG | 0.611306 | 5.1:+62241476 | MS.gene32549:intron |
| TTCGTTAGATTTGCCAACTG+GGG | 0.615840 | 5.1:+62241728 | MS.gene32549:CDS |
| CCAAAAGAGTAGTTTGACAG+AGG | 0.617143 | 5.1:-62241618 | None:intergenic |
| GCTTATCATCAGGACGTAGG+TGG | 0.622815 | 5.1:+62240960 | MS.gene32549:CDS |
| GGAATTAGTAGTGATGGAGA+TGG | 0.631774 | 5.1:+62238860 | MS.gene32549:CDS |
| TGGATATCAAGAATTTCAAG+TGG | 0.632369 | 5.1:+62240830 | MS.gene32549:CDS |
| GACAACAAGTATAGTCACTC+GGG | 0.642555 | 5.1:-62241753 | None:intergenic |
| TTGGAGGTCACGAAAAGAGG+AGG | 0.644365 | 5.1:+62239530 | MS.gene32549:CDS |
| GATAATCATTCAAATCACCT+GGG | 0.650646 | 5.1:-62241704 | None:intergenic |
| GGACGAGCAAGATTATCAGA+AGG | 0.655330 | 5.1:+62240212 | MS.gene32549:CDS |
| TTGGAATAAGTTGTCAGACA+AGG | 0.660735 | 5.1:+62241013 | MS.gene32549:CDS |
| AAAGCTCAGTGAGCTTACGA+TGG | 0.661623 | 5.1:-62238980 | None:intergenic |
| ACATGAGATTGAATCCAGAA+GGG | 0.670630 | 5.1:-62239007 | None:intergenic |
| AAAGAAAAGAAGAAACGGAG+AGG | 0.672313 | 5.1:+62240876 | MS.gene32549:CDS |
| AATTTGACTAGAGTAGTCCT+CGG | 0.673968 | 5.1:-62240247 | None:intergenic |
| AAAGCTTATCATCAGGACGT+AGG | 0.684875 | 5.1:+62240957 | MS.gene32549:CDS |
| GGTGCTCCAATAGGACAGAG+TGG | 0.688534 | 5.1:+62240897 | MS.gene32549:CDS |
| GAAGGCAGCAAAGATATCCG+AGG | 0.700751 | 5.1:+62240230 | MS.gene32549:CDS |
| GAAAAGAGGAGGTTATCACC+AGG | 0.701758 | 5.1:+62239541 | MS.gene32549:CDS |
| GTTGATCAAGAAAAGAAATG+GGG | 0.707030 | 5.1:+62239927 | MS.gene32549:CDS |
| AAACATAGAGGTGTTCCAAG+GGG | 0.716007 | 5.1:+62241223 | MS.gene32549:CDS |
| GAAGAGAGACCTATTGTGTG+TGG | 0.716478 | 5.1:+62241570 | MS.gene32549:CDS |
| TACGATGGAAGCTCTCAGTG+AGG | 0.727693 | 5.1:-62238965 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATAAGAGTTTTAAATA+TGG | + | chr5.1:62240679-62240698 | MS.gene32549:intron | 10.0% |
| !! | TCATAAAAAAAATACAACTT+TGG | + | chr5.1:62240404-62240423 | MS.gene32549:intron | 15.0% |
| !! | TTGAACAAATAAAACATATT+TGG | - | chr5.1:62239842-62239861 | None:intergenic | 15.0% |
| !! | ACAAATAAAACATATTTGGA+TGG | - | chr5.1:62239838-62239857 | None:intergenic | 20.0% |
| !! | ACATGAAAAGTAATTAGAAA+TGG | - | chr5.1:62241129-62241148 | None:intergenic | 20.0% |
| !! | TTCCTTATGAAAATGAAAAT+GGG | + | chr5.1:62238883-62238902 | MS.gene32549:CDS | 20.0% |
| !!! | ACAATCCAAATTTAGTTTAA+AGG | + | chr5.1:62240771-62240790 | MS.gene32549:intron | 20.0% |
| !!! | AGATATACAATTTTAATGAG+AGG | + | chr5.1:62240281-62240300 | MS.gene32549:intron | 20.0% |
| !!! | AGTTTATAATTTTACTTGAC+TGG | + | chr5.1:62240130-62240149 | MS.gene32549:intron | 20.0% |
| !!! | ATTCTTTTTCATTCAATGAA+TGG | - | chr5.1:62240317-62240336 | None:intergenic | 20.0% |
| !!! | TATGATACTTATTTTGAATC+AGG | - | chr5.1:62240389-62240408 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTGCCATTTTTT+TGG | + | chr5.1:62239069-62239088 | MS.gene32549:intron | 20.0% |
| !!! | TTTCTTCTTTTCTTTGTTAT+TGG | - | chr5.1:62241206-62241225 | None:intergenic | 20.0% |
| ! | AAAGAAAAGAAGAAACATAG+AGG | + | chr5.1:62241211-62241230 | MS.gene32549:CDS | 25.0% |
| ! | AAATACATATAGTAGCAAAC+AGG | - | chr5.1:62240494-62240513 | None:intergenic | 25.0% |
| ! | AATGAGAAAGAGATTAAAGA+AGG | - | chr5.1:62239049-62239068 | None:intergenic | 25.0% |
| ! | ACATGAAATGTAATTACAAG+TGG | - | chr5.1:62241464-62241483 | None:intergenic | 25.0% |
| ! | AGAACAAAGAAAAGAAGAAA+CGG | + | chr5.1:62240871-62240890 | MS.gene32549:CDS | 25.0% |
| ! | ATATAACCAAACAATATACC+TGG | - | chr5.1:62239562-62239581 | None:intergenic | 25.0% |
| ! | ATATAATATATTCCTCAAGC+AGG | + | chr5.1:62240920-62240939 | MS.gene32549:CDS | 25.0% |
| ! | CATATTCGAAAATTCATACA+AGG | - | chr5.1:62239875-62239894 | None:intergenic | 25.0% |
| ! | CATTAATTGAGATAAACTAG+TGG | - | chr5.1:62240193-62240212 | None:intergenic | 25.0% |
| ! | GTAAAACAACCTTATACTTT+CGG | + | chr5.1:62239371-62239390 | MS.gene32549:intron | 25.0% |
| ! | GTTCCTTATGAAAATGAAAA+TGG | + | chr5.1:62238882-62238901 | MS.gene32549:CDS | 25.0% |
| ! | TGTATTTATTATCTGCACTA+TGG | + | chr5.1:62240507-62240526 | MS.gene32549:intron | 25.0% |
| !! | ATCCAAATTTAGTTTAAAGG+TGG | + | chr5.1:62240774-62240793 | MS.gene32549:intron | 25.0% |
| !! | ATCCCATTTTCATTTTCATA+AGG | - | chr5.1:62238888-62238907 | None:intergenic | 25.0% |
| !! | ATTTGTTGGAAGAGTTTAAA+GGG | + | chr5.1:62240557-62240576 | MS.gene32549:intron | 25.0% |
| !! | CACTAGTTTATCTCAATTAA+TGG | + | chr5.1:62240191-62240210 | MS.gene32549:intron | 25.0% |
| !! | TATAATTTTACTTGACTGGT+TGG | + | chr5.1:62240134-62240153 | MS.gene32549:intron | 25.0% |
| !! | TTAGTAACTCAATGATTTGT+TGG | + | chr5.1:62240543-62240562 | MS.gene32549:intron | 25.0% |
| !!! | AAATGGGATTTTTTCATCAA+TGG | + | chr5.1:62238899-62238918 | MS.gene32549:CDS | 25.0% |
| !!! | AATGGAAGCTACATATTTTT+TGG | - | chr5.1:62239799-62239818 | None:intergenic | 25.0% |
| !!! | AATGTCTTTTTCTAGTCTAT+TGG | + | chr5.1:62239184-62239203 | MS.gene32549:intron | 25.0% |
| !!! | TTCTTTTCTTTGTTATTGGT+GGG | - | chr5.1:62241202-62241221 | None:intergenic | 25.0% |
| AAAGCTGATCATCAGTTTAA+AGG | + | chr5.1:62241295-62241314 | MS.gene32549:CDS | 30.0% | |
| AGCCACCTTTAAACTAAATT+TGG | - | chr5.1:62240779-62240798 | None:intergenic | 30.0% | |
| CACAATTGATCAATTCACTA+TGG | + | chr5.1:62240435-62240454 | MS.gene32549:intron | 30.0% | |
| CCAAATAGAATTGGAAAAAG+AGG | - | chr5.1:62239464-62239483 | None:intergenic | 30.0% | |
| GAACATGCAAACCAAAAAAA+TGG | - | chr5.1:62239083-62239102 | None:intergenic | 30.0% | |
| GATAATCATTCAAATCACCT+GGG | - | chr5.1:62241707-62241726 | None:intergenic | 30.0% | |
| GGTTGATCAAGAAAAGAAAT+GGG | + | chr5.1:62239926-62239945 | MS.gene32549:intron | 30.0% | |
| GTCATATTCATTAATTGACG+TGG | + | chr5.1:62239338-62239357 | MS.gene32549:intron | 30.0% | |
| GTTGATCAAGAAAAGAAATG+GGG | + | chr5.1:62239927-62239946 | MS.gene32549:CDS | 30.0% | |
| TAAAGAGAATGACATGCAAA+CGG | - | chr5.1:62239126-62239145 | None:intergenic | 30.0% | |
| TCAAAATCTGCAAAGAAATC+TGG | - | chr5.1:62240644-62240663 | None:intergenic | 30.0% | |
| TCAAATCTGCCAAATAGAAT+TGG | - | chr5.1:62239473-62239492 | None:intergenic | 30.0% | |
| TGGAAGAAAAATCATAGAGA+TGG | + | chr5.1:62240980-62240999 | MS.gene32549:CDS | 30.0% | |
| TGGATATCAAGAATTTCAAG+TGG | + | chr5.1:62240830-62240849 | MS.gene32549:CDS | 30.0% | |
| TTATATCCACATTGTTGACA+TGG | + | chr5.1:62239576-62239595 | MS.gene32549:intron | 30.0% | |
| TTATCACCAGGTATATTGTT+TGG | + | chr5.1:62239553-62239572 | MS.gene32549:intron | 30.0% | |
| ! | AGGTTGATCAAGAAAAGAAA+TGG | + | chr5.1:62239925-62239944 | MS.gene32549:intron | 30.0% |
| ! | ATATAGTAGCAAACAGGTTT+TGG | - | chr5.1:62240488-62240507 | None:intergenic | 30.0% |
| ! | CCTCTTTTTCCAATTCTATT+TGG | + | chr5.1:62239461-62239480 | MS.gene32549:intron | 30.0% |
| ! | CTTCTTTTCTTTGTTCTTTG+CGG | - | chr5.1:62240868-62240887 | None:intergenic | 30.0% |
| ! | TCTAGCAAAAAAGTTAGTCT+CGG | + | chr5.1:62239683-62239702 | MS.gene32549:intron | 30.0% |
| ! | TTCTTTTCTTTGTTCTTTGC+GGG | - | chr5.1:62240867-62240886 | None:intergenic | 30.0% |
| !! | GATTTGTTGGAAGAGTTTAA+AGG | + | chr5.1:62240556-62240575 | MS.gene32549:intron | 30.0% |
| !!! | CTTCTTTTCTTTGTTATTGG+TGG | - | chr5.1:62241203-62241222 | None:intergenic | 30.0% |
| !!! | CTTTTCAAGTTGATCACATA+AGG | - | chr5.1:62239994-62240013 | None:intergenic | 30.0% |
| AAAATCAACCATATCGTTGG+TGG | + | chr5.1:62240599-62240618 | MS.gene32549:intron | 35.0% | |
| AAAGAAAAGAAGAAACGGAG+AGG | + | chr5.1:62240876-62240895 | MS.gene32549:CDS | 35.0% | |
| AACATGAGATTGAATCCAGA+AGG | - | chr5.1:62239011-62239030 | None:intergenic | 35.0% | |
| AATTTGACTAGAGTAGTCCT+CGG | - | chr5.1:62240250-62240269 | None:intergenic | 35.0% | |
| ACAATACCATGTCAACAATG+TGG | - | chr5.1:62239585-62239604 | None:intergenic | 35.0% | |
| ACATGAGATTGAATCCAGAA+GGG | - | chr5.1:62239010-62239029 | None:intergenic | 35.0% | |
| AGAAGCAAAGGAATTAGAGA+TGG | + | chr5.1:62238923-62238942 | MS.gene32549:CDS | 35.0% | |
| AGGAAAGGAATTAGTAGTGA+TGG | + | chr5.1:62238854-62238873 | MS.gene32549:CDS | 35.0% | |
| AGTAAAACAGGTACAAGTCA+AGG | - | chr5.1:62239511-62239530 | None:intergenic | 35.0% | |
| ATTCAAATCACCTGGGAAAA+AGG | - | chr5.1:62241700-62241719 | None:intergenic | 35.0% | |
| CGATAATCATTCAAATCACC+TGG | - | chr5.1:62241708-62241727 | None:intergenic | 35.0% | |
| CTCTCAGTGAGGATATAATA+TGG | - | chr5.1:62238957-62238976 | None:intergenic | 35.0% | |
| GACTACTCTAGTCAAATTAC+AGG | + | chr5.1:62240252-62240271 | MS.gene32549:CDS | 35.0% | |
| GATCAATTCACTATGGTCTA+TGG | + | chr5.1:62240442-62240461 | MS.gene32549:intron | 35.0% | |
| GTAAAACAGGTACAAGTCAA+GGG | - | chr5.1:62239510-62239529 | None:intergenic | 35.0% | |
| TAAAGGTGACCGAAAAATCA+CGG | + | chr5.1:62241312-62241331 | MS.gene32549:CDS | 35.0% | |
| TATGTAGCTTCTAACCAACA+AGG | + | chr5.1:62239654-62239673 | MS.gene32549:intron | 35.0% | |
| TCGACTTAAAGCTTATCATC+AGG | + | chr5.1:62240950-62240969 | MS.gene32549:CDS | 35.0% | |
| TGGAAGAGTTTAAAGGGATT+TGG | + | chr5.1:62240563-62240582 | MS.gene32549:intron | 35.0% | |
| TTATATCCACTCTGTCCTAT+TGG | - | chr5.1:62240906-62240925 | None:intergenic | 35.0% | |
| TTCAAATCACCTGGGAAAAA+GGG | - | chr5.1:62241699-62241718 | None:intergenic | 35.0% | |
| TTCATCAATGGAAGAAGCAA+AGG | + | chr5.1:62238911-62238930 | MS.gene32549:CDS | 35.0% | |
| TTCATGCTTTCCTCTTCATA+TGG | - | chr5.1:62241489-62241508 | None:intergenic | 35.0% | |
| TTGAGACATTGTACTTCTAC+AGG | + | chr5.1:62240039-62240058 | MS.gene32549:CDS | 35.0% | |
| TTGCTAGATTCAAACCTTGT+TGG | - | chr5.1:62239671-62239690 | None:intergenic | 35.0% | |
| TTGGAATAAGTTGTCAGACA+AGG | + | chr5.1:62241013-62241032 | MS.gene32549:CDS | 35.0% | |
| TTTCATGTAGCCATATGAAG+AGG | + | chr5.1:62241141-62241160 | MS.gene32549:intron | 35.0% | |
| ! | AGAGGAAAGCATGAAGATAA+AGG | + | chr5.1:62241494-62241513 | MS.gene32549:CDS | 35.0% |
| ! | CATCAATAGCCGTGATTTTT+CGG | - | chr5.1:62241324-62241343 | None:intergenic | 35.0% |
| ! | TAGCATACACCGAAAGTATA+AGG | - | chr5.1:62239383-62239402 | None:intergenic | 35.0% |
| ! | TATCGTACCAGTTTTTCCAT+GGG | - | chr5.1:62241364-62241383 | None:intergenic | 35.0% |
| ! | TTATCGTACCAGTTTTTCCA+TGG | - | chr5.1:62241365-62241384 | None:intergenic | 35.0% |
| !! | ACCAACGATATGGTTGATTT+TGG | - | chr5.1:62240600-62240619 | None:intergenic | 35.0% |
| !! | AGTTGTTTCTGCTCTAAAAC+TGG | + | chr5.1:62239953-62239972 | MS.gene32549:CDS | 35.0% |
| !! | TGACTTGTACCTGTTTTACT+TGG | + | chr5.1:62239511-62239530 | MS.gene32549:CDS | 35.0% |
| !!! | TTGGTTTGCATGTTCTGTTT+TGG | + | chr5.1:62239088-62239107 | MS.gene32549:intron | 35.0% |
| !!! | TTTTTTGGTTTCCCACATAC+AGG | - | chr5.1:62239784-62239803 | None:intergenic | 35.0% |
| AAAGCTTATCATCAGGACGT+AGG | + | chr5.1:62240957-62240976 | MS.gene32549:CDS | 40.0% | |
| AAATCACGGCTATTGATGCT+TGG | + | chr5.1:62241326-62241345 | MS.gene32549:CDS | 40.0% | |
| ACTGACAGAAAAAACATCCG+AGG | + | chr5.1:62241671-62241690 | MS.gene32549:CDS | 40.0% | |
| CCAAAAGAGTAGTTTGACAG+AGG | - | chr5.1:62241621-62241640 | None:intergenic | 40.0% | |
| CTTTCAAACCACCAACGATA+TGG | - | chr5.1:62240610-62240629 | None:intergenic | 40.0% | |
| GCCAAAATCAACCATATCGT+TGG | + | chr5.1:62240596-62240615 | MS.gene32549:intron | 40.0% | |
| GCTACGTCGAAAACTAAATG+TGG | - | chr5.1:62239744-62239763 | None:intergenic | 40.0% | |
| GGATAAGCTTGATCTGCAAA+TGG | - | chr5.1:62239817-62239836 | None:intergenic | 40.0% | |
| GTTCGTTAGATTTGCCAACT+GGG | + | chr5.1:62241727-62241746 | MS.gene32549:CDS | 40.0% | |
| TAGAGATGGCTATTGATGCT+TGG | + | chr5.1:62240994-62241013 | MS.gene32549:CDS | 40.0% | |
| TAGTAGTCACCACACACAAT+AGG | - | chr5.1:62241582-62241601 | None:intergenic | 40.0% | |
| TGGCAGCAATACAGGTTAAT+TGG | + | chr5.1:62240085-62240104 | MS.gene32549:intron | 40.0% | |
| TTCGTTAGATTTGCCAACTG+GGG | + | chr5.1:62241728-62241747 | MS.gene32549:CDS | 40.0% | |
| TTCTCTTGAATGATTGCTGC+AGG | + | chr5.1:62239905-62239924 | MS.gene32549:intron | 40.0% | |
| ! | ACAAGTCGTGTTTTCATACG+TGG | - | chr5.1:62239320-62239339 | None:intergenic | 40.0% |
| ! | ATCGTACCAGTTTTTCCATG+GGG | - | chr5.1:62241363-62241382 | None:intergenic | 40.0% |
| ! | CAAGATCTTCAGTGCTCTTT+TGG | - | chr5.1:62241542-62241561 | None:intergenic | 40.0% |
| ! | CCTCTGTCAAACTACTCTTT+TGG | + | chr5.1:62241618-62241637 | MS.gene32549:CDS | 40.0% |
| ! | CTTGTACCTGTTTTACTTGG+AGG | + | chr5.1:62239514-62239533 | MS.gene32549:CDS | 40.0% |
| ! | GGAATTAGTAGTGATGGAGA+TGG | + | chr5.1:62238860-62238879 | MS.gene32549:CDS | 40.0% |
| !! | AAACATAGAGGTGTTCCAAG+GGG | + | chr5.1:62241223-62241242 | MS.gene32549:CDS | 40.0% |
| !! | AGAAACATAGAGGTGTTCCA+AGG | + | chr5.1:62241221-62241240 | MS.gene32549:CDS | 40.0% |
| !! | GAAACATAGAGGTGTTCCAA+GGG | + | chr5.1:62241222-62241241 | MS.gene32549:CDS | 40.0% |
| !! | GTTTCTGCTCTAAAACTGGA+AGG | + | chr5.1:62239957-62239976 | MS.gene32549:CDS | 40.0% |
| AAAGCTCAGTGAGCTTACGA+TGG | - | chr5.1:62238983-62239002 | None:intergenic | 45.0% | |
| ACAAGGTTTCCTCCTGTATG+TGG | + | chr5.1:62239769-62239788 | MS.gene32549:intron | 45.0% | |
| AGAGGCAAGCGTGAAGATAA+AGG | + | chr5.1:62241159-62241178 | MS.gene32549:CDS | 45.0% | |
| CAAGGTTTCCTCCTGTATGT+GGG | + | chr5.1:62239770-62239789 | MS.gene32549:intron | 45.0% | |
| CGTTCGTTAGATTTGCCAAC+TGG | + | chr5.1:62241726-62241745 | MS.gene32549:CDS | 45.0% | |
| CTCTACGTAGTCAACCACAT+CGG | - | chr5.1:62240731-62240750 | None:intergenic | 45.0% | |
| CTGCAAAGAAATCTGGACTG+CGG | - | chr5.1:62240637-62240656 | None:intergenic | 45.0% | |
| GAAAAGAGGAGGTTATCACC+AGG | + | chr5.1:62239541-62239560 | MS.gene32549:CDS | 45.0% | |
| GAAGAGAGACCTATTGTGTG+TGG | + | chr5.1:62241570-62241589 | MS.gene32549:CDS | 45.0% | |
| GGACGAGCAAGATTATCAGA+AGG | + | chr5.1:62240212-62240231 | MS.gene32549:CDS | 45.0% | |
| GTTGTCAGACAAGGAGAAAC+AGG | + | chr5.1:62241022-62241041 | MS.gene32549:CDS | 45.0% | |
| TACTTGGAGGTCACGAAAAG+AGG | + | chr5.1:62239527-62239546 | MS.gene32549:CDS | 45.0% | |
| TCGTGACCTCCAAGTAAAAC+AGG | - | chr5.1:62239523-62239542 | None:intergenic | 45.0% | |
| TGGTTGACTACGTAGAGTCA+CGG | + | chr5.1:62240734-62240753 | MS.gene32549:intron | 45.0% | |
| TTCACGCTTGCCTCTTCATA+TGG | - | chr5.1:62241154-62241173 | None:intergenic | 45.0% | |
| TTTCGACGTAGCCTCAAACA+AGG | + | chr5.1:62239752-62239771 | MS.gene32549:intron | 45.0% | |
| ! | ACAGGAGGAAACCTTGTTTG+AGG | - | chr5.1:62239766-62239785 | None:intergenic | 45.0% |
| ! | TCGTAAGCTCACTGAGCTTT+TGG | + | chr5.1:62238983-62239002 | MS.gene32549:CDS | 45.0% |
| ! | TCGTACCAGTTTTTCCATGG+GGG | - | chr5.1:62241362-62241381 | None:intergenic | 45.0% |
| ! | TTTGGTTTCCCACATACAGG+AGG | - | chr5.1:62239781-62239800 | None:intergenic | 45.0% |
| !! | AGAGCACTGAAGATCTTGAG+AGG | + | chr5.1:62241544-62241563 | MS.gene32549:CDS | 45.0% |
| !! | GAGCACTGAAGATCTTGAGA+GGG | + | chr5.1:62241545-62241564 | MS.gene32549:CDS | 45.0% |
| !!! | ATTAAACTAATTTTTTTTTA+TGG | + | chr5.1:62239403-62239422 | MS.gene32549:intron | 5.0% |
| AATGTGGACACCACTCTCAG+AGG | - | chr5.1:62239728-62239747 | None:intergenic | 50.0% | |
| ACCTGGGAAAAAGGGATCCT+CGG | - | chr5.1:62241691-62241710 | None:intergenic | 50.0% | |
| ACTGCAACTGGCAGCAATAC+AGG | + | chr5.1:62240077-62240096 | MS.gene32549:intron | 50.0% | |
| CCTGCAACTCAAACTGCAAC+TGG | + | chr5.1:62240065-62240084 | MS.gene32549:intron | 50.0% | |
| GAAGGCAGCAAAGATATCCG+AGG | + | chr5.1:62240230-62240249 | MS.gene32549:CDS | 50.0% | |
| GATGTCCCCCATGGAAAAAC+TGG | + | chr5.1:62241354-62241373 | MS.gene32549:CDS | 50.0% | |
| GCTTATCATCAGGACGTAGG+TGG | + | chr5.1:62240960-62240979 | MS.gene32549:CDS | 50.0% | |
| GGTGGCTCATATGAAGTCAG+AGG | + | chr5.1:62240792-62240811 | MS.gene32549:intron | 50.0% | |
| GGTTGACTACGTAGAGTCAC+GGG | + | chr5.1:62240735-62240754 | MS.gene32549:intron | 50.0% | |
| GTCTAGCGCATTCATGCTTG+AGG | - | chr5.1:62241273-62241292 | None:intergenic | 50.0% | |
| GTGGTTCGATCAAGATGGGT+TGG | - | chr5.1:62240706-62240725 | None:intergenic | 50.0% | |
| TACGATGGAAGCTCTCAGTG+AGG | - | chr5.1:62238968-62238987 | None:intergenic | 50.0% | |
| TACGTAGTCAACCACATCGG+TGG | - | chr5.1:62240728-62240747 | None:intergenic | 50.0% | |
| TATGCACTCTTCTGTCCCCT+TGG | - | chr5.1:62241241-62241260 | None:intergenic | 50.0% | |
| TTGGAAGATGATGTCCCCCA+TGG | + | chr5.1:62241345-62241364 | MS.gene32549:CDS | 50.0% | |
| TTGGAGGTCACGAAAAGAGG+AGG | + | chr5.1:62239530-62239549 | MS.gene32549:CDS | 50.0% | |
| ! | ACTGAGCTTTTGGACCCTTC+TGG | + | chr5.1:62238993-62239012 | MS.gene32549:CDS | 50.0% |
| ! | CTCTTTTGGCAACAACGCAG+TGG | + | chr5.1:62241632-62241651 | MS.gene32549:CDS | 50.0% |
| ! | GGTGGTGGTTCGATCAAGAT+GGG | - | chr5.1:62240710-62240729 | None:intergenic | 50.0% |
| ! | TTTTGGCAACAACGCAGTGG+TGG | + | chr5.1:62241635-62241654 | MS.gene32549:CDS | 50.0% |
| !! | AAACGGAGAGGTGCTCCAAT+AGG | + | chr5.1:62240888-62240907 | MS.gene32549:CDS | 50.0% |
| !! | AGAGGTGCTTATGCAGGAGT+TGG | + | chr5.1:62240810-62240829 | MS.gene32549:intron | 50.0% |
| !! | CCAGTTGCAGTTTGAGTTGC+AGG | - | chr5.1:62240068-62240087 | None:intergenic | 50.0% |
| !! | GAAGTCAGAGGTGCTTATGC+AGG | + | chr5.1:62240804-62240823 | MS.gene32549:intron | 50.0% |
| GGTGCTCCAATAGGACAGAG+TGG | + | chr5.1:62240897-62240916 | MS.gene32549:CDS | 55.0% | |
| GTAGTCAACCACATCGGTGG+TGG | - | chr5.1:62240725-62240744 | None:intergenic | 55.0% | |
| TGATCGAACCACCACCGATG+TGG | + | chr5.1:62240714-62240733 | MS.gene32549:intron | 55.0% | |
| ! | CGGTGGTGGTTCGATCAAGA+TGG | - | chr5.1:62240711-62240730 | None:intergenic | 55.0% |
| ! | GCTCGAATCTCCTCTGAGAG+TGG | + | chr5.1:62239715-62239734 | MS.gene32549:intron | 55.0% |
| ! | TCCGAGGATCCCTTTTTCCC+AGG | + | chr5.1:62241687-62241706 | MS.gene32549:CDS | 55.0% |
| GTCGAGCACACTCCTGCTTG+AGG | - | chr5.1:62240935-62240954 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 62238846 | 62241761 | 62238846 | ID=MS.gene32549 |
| chr5.1 | mRNA | 62238846 | 62241761 | 62238846 | ID=MS.gene32549.t1;Parent=MS.gene32549 |
| chr5.1 | exon | 62238846 | 62239027 | 62238846 | ID=MS.gene32549.t1.exon1;Parent=MS.gene32549.t1 |
| chr5.1 | CDS | 62238846 | 62239027 | 62238846 | ID=cds.MS.gene32549.t1;Parent=MS.gene32549.t1 |
| chr5.1 | exon | 62239487 | 62239562 | 62239487 | ID=MS.gene32549.t1.exon2;Parent=MS.gene32549.t1 |
| chr5.1 | CDS | 62239487 | 62239562 | 62239487 | ID=cds.MS.gene32549.t1;Parent=MS.gene32549.t1 |
| chr5.1 | exon | 62239927 | 62240060 | 62239927 | ID=MS.gene32549.t1.exon3;Parent=MS.gene32549.t1 |
| chr5.1 | CDS | 62239927 | 62240060 | 62239927 | ID=cds.MS.gene32549.t1;Parent=MS.gene32549.t1 |
| chr5.1 | exon | 62240197 | 62240273 | 62240197 | ID=MS.gene32549.t1.exon4;Parent=MS.gene32549.t1 |
| chr5.1 | CDS | 62240197 | 62240273 | 62240197 | ID=cds.MS.gene32549.t1;Parent=MS.gene32549.t1 |
| chr5.1 | exon | 62240826 | 62241043 | 62240826 | ID=MS.gene32549.t1.exon5;Parent=MS.gene32549.t1 |
| chr5.1 | CDS | 62240826 | 62241043 | 62240826 | ID=cds.MS.gene32549.t1;Parent=MS.gene32549.t1 |
| chr5.1 | exon | 62241151 | 62241375 | 62241151 | ID=MS.gene32549.t1.exon6;Parent=MS.gene32549.t1 |
| chr5.1 | CDS | 62241151 | 62241375 | 62241151 | ID=cds.MS.gene32549.t1;Parent=MS.gene32549.t1 |
| chr5.1 | exon | 62241486 | 62241761 | 62241486 | ID=MS.gene32549.t1.exon7;Parent=MS.gene32549.t1 |
| chr5.1 | CDS | 62241486 | 62241761 | 62241486 | ID=cds.MS.gene32549.t1;Parent=MS.gene32549.t1 |
| Gene Sequence |
| Protein sequence |
