Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32581.t1 | XP_013466751.1 | 86.9 | 528 | 59 | 4 | 4 | 521 | 51 | 578 | 5.90E-266 | 926.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32581.t1 | Q9T0G7 | 58.4 | 514 | 204 | 6 | 6 | 511 | 130 | 641 | 3.1e-175 | 616.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32581.t1 | A0A072VG77 | 86.9 | 528 | 59 | 4 | 4 | 521 | 51 | 578 | 4.2e-266 | 926.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene32581.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32581.t1 | MTR_1g035400 | 88.136 | 531 | 53 | 4 | 1 | 521 | 48 | 578 | 0.0 | 933 |
MS.gene32581.t1 | MTR_1g035420 | 83.752 | 517 | 83 | 1 | 6 | 521 | 143 | 659 | 0.0 | 888 |
MS.gene32581.t1 | MTR_8g070070 | 66.450 | 462 | 151 | 3 | 54 | 511 | 299 | 760 | 0.0 | 650 |
MS.gene32581.t1 | MTR_8g071030 | 55.415 | 554 | 202 | 5 | 3 | 511 | 187 | 740 | 0.0 | 620 |
MS.gene32581.t1 | MTR_8g070075 | 52.817 | 568 | 206 | 7 | 6 | 511 | 186 | 753 | 0.0 | 602 |
MS.gene32581.t1 | MTR_6g044690 | 55.172 | 522 | 195 | 10 | 15 | 508 | 54 | 564 | 0.0 | 555 |
MS.gene32581.t1 | MTR_0376s0030 | 50.936 | 534 | 222 | 10 | 16 | 521 | 57 | 578 | 9.59e-178 | 513 |
MS.gene32581.t1 | MTR_6g043960 | 50.389 | 514 | 195 | 11 | 23 | 508 | 1 | 482 | 8.94e-165 | 476 |
MS.gene32581.t1 | MTR_2g054460 | 47.519 | 524 | 183 | 13 | 15 | 508 | 3 | 464 | 6.43e-150 | 437 |
MS.gene32581.t1 | MTR_7g088370 | 39.879 | 494 | 275 | 10 | 21 | 508 | 203 | 680 | 2.30e-116 | 359 |
MS.gene32581.t1 | MTR_8g042750 | 38.235 | 510 | 277 | 15 | 21 | 509 | 167 | 659 | 1.35e-101 | 320 |
MS.gene32581.t1 | MTR_3g011440 | 36.399 | 511 | 283 | 13 | 21 | 507 | 141 | 633 | 2.30e-101 | 319 |
MS.gene32581.t1 | MTR_5g013420 | 36.174 | 528 | 300 | 14 | 3 | 516 | 563 | 1067 | 2.00e-95 | 313 |
MS.gene32581.t1 | MTR_5g013420 | 36.174 | 528 | 300 | 14 | 3 | 516 | 563 | 1067 | 2.19e-95 | 313 |
MS.gene32581.t1 | MTR_4g010830 | 34.522 | 533 | 311 | 14 | 3 | 520 | 455 | 964 | 8.30e-89 | 293 |
MS.gene32581.t1 | MTR_4g010550 | 34.519 | 478 | 255 | 16 | 47 | 516 | 15 | 442 | 3.46e-80 | 258 |
MS.gene32581.t1 | MTR_7g084090 | 36.401 | 489 | 278 | 13 | 52 | 516 | 258 | 737 | 4.64e-80 | 265 |
MS.gene32581.t1 | MTR_6g061270 | 36.214 | 486 | 282 | 12 | 52 | 516 | 196 | 674 | 3.70e-79 | 261 |
MS.gene32581.t1 | MTR_6g061200 | 35.010 | 477 | 271 | 12 | 52 | 516 | 196 | 645 | 3.11e-73 | 245 |
MS.gene32581.t1 | MTR_7g084090 | 38.827 | 358 | 203 | 8 | 52 | 397 | 258 | 611 | 3.03e-67 | 229 |
MS.gene32581.t1 | MTR_1g048950 | 31.470 | 483 | 264 | 15 | 50 | 506 | 66 | 507 | 5.99e-53 | 188 |
MS.gene32581.t1 | MTR_7g445710 | 29.132 | 484 | 246 | 15 | 55 | 514 | 110 | 520 | 1.06e-45 | 168 |
MS.gene32581.t1 | MTR_7g445530 | 28.931 | 477 | 242 | 15 | 55 | 507 | 110 | 513 | 4.49e-45 | 166 |
MS.gene32581.t1 | MTR_7g450730 | 29.451 | 455 | 233 | 14 | 55 | 507 | 107 | 475 | 4.62e-45 | 166 |
MS.gene32581.t1 | MTR_7g052480 | 31.922 | 307 | 196 | 7 | 215 | 511 | 227 | 530 | 6.71e-42 | 158 |
MS.gene32581.t1 | MTR_6g044000 | 42.500 | 120 | 51 | 1 | 23 | 124 | 1 | 120 | 1.61e-26 | 106 |
MS.gene32581.t1 | MTR_6g044000 | 60.377 | 53 | 21 | 0 | 456 | 508 | 117 | 169 | 5.63e-15 | 73.6 |
MS.gene32581.t1 | MTR_1g080340 | 26.059 | 307 | 156 | 11 | 258 | 508 | 269 | 560 | 6.92e-19 | 90.5 |
MS.gene32581.t1 | MTR_1g069570 | 25.163 | 306 | 159 | 10 | 258 | 508 | 430 | 720 | 8.81e-19 | 90.5 |
MS.gene32581.t1 | MTR_8g078490 | 26.829 | 287 | 155 | 12 | 258 | 506 | 960 | 1229 | 9.34e-17 | 84.3 |
MS.gene32581.t1 | MTR_5g098680 | 33.974 | 156 | 90 | 3 | 80 | 229 | 267 | 415 | 2.43e-16 | 82.4 |
MS.gene32581.t1 | MTR_5g018850 | 33.540 | 161 | 85 | 4 | 325 | 479 | 1312 | 1456 | 4.51e-16 | 82.4 |
MS.gene32581.t1 | MTR_4g132610 | 27.660 | 188 | 114 | 3 | 325 | 506 | 852 | 1023 | 9.91e-16 | 80.9 |
MS.gene32581.t1 | MTR_8g078505 | 29.032 | 186 | 112 | 3 | 325 | 506 | 346 | 515 | 2.72e-15 | 79.0 |
MS.gene32581.t1 | MTR_8g102580 | 31.410 | 156 | 94 | 3 | 80 | 229 | 261 | 409 | 9.96e-15 | 77.4 |
MS.gene32581.t1 | MTR_6g027690 | 28.641 | 206 | 120 | 7 | 304 | 507 | 217 | 397 | 9.52e-13 | 70.5 |
MS.gene32581.t1 | MTR_3g114910 | 30.000 | 150 | 94 | 3 | 80 | 229 | 187 | 325 | 2.58e-12 | 68.9 |
MS.gene32581.t1 | MTR_7g445810 | 33.121 | 157 | 89 | 5 | 55 | 208 | 123 | 266 | 2.50e-11 | 64.7 |
MS.gene32581.t1 | MTR_7g445600 | 32.540 | 126 | 74 | 3 | 55 | 180 | 106 | 220 | 2.66e-11 | 65.5 |
MS.gene32581.t1 | MTR_1g064770 | 42.188 | 64 | 36 | 1 | 337 | 399 | 28 | 91 | 3.13e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32581.t1 | AT4G13460 | 58.171 | 514 | 205 | 6 | 6 | 511 | 130 | 641 | 0.0 | 613 |
MS.gene32581.t1 | AT4G13460 | 58.171 | 514 | 205 | 6 | 6 | 511 | 130 | 641 | 0.0 | 613 |
MS.gene32581.t1 | AT2G33290 | 55.273 | 512 | 222 | 4 | 6 | 512 | 134 | 643 | 0.0 | 583 |
MS.gene32581.t1 | AT2G33290 | 55.273 | 512 | 222 | 4 | 6 | 512 | 134 | 643 | 0.0 | 583 |
MS.gene32581.t1 | AT2G33290 | 55.273 | 512 | 222 | 4 | 6 | 512 | 134 | 643 | 0.0 | 583 |
MS.gene32581.t1 | AT2G33290 | 55.273 | 512 | 222 | 4 | 6 | 512 | 134 | 643 | 0.0 | 583 |
MS.gene32581.t1 | AT5G04940 | 36.673 | 499 | 294 | 13 | 21 | 509 | 155 | 641 | 4.46e-99 | 313 |
MS.gene32581.t1 | AT5G04940 | 36.673 | 499 | 294 | 13 | 21 | 509 | 155 | 641 | 4.46e-99 | 313 |
MS.gene32581.t1 | AT1G73100 | 38.105 | 475 | 270 | 12 | 56 | 519 | 189 | 650 | 3.57e-98 | 311 |
MS.gene32581.t1 | AT2G22740 | 34.241 | 514 | 305 | 13 | 21 | 516 | 270 | 768 | 1.58e-83 | 275 |
MS.gene32581.t1 | AT2G22740 | 34.241 | 514 | 305 | 13 | 21 | 516 | 270 | 768 | 1.58e-83 | 275 |
MS.gene32581.t1 | AT1G17770 | 36.111 | 468 | 270 | 12 | 57 | 509 | 209 | 662 | 3.65e-82 | 270 |
MS.gene32581.t1 | AT2G35160 | 35.498 | 462 | 254 | 12 | 56 | 511 | 309 | 732 | 1.13e-81 | 270 |
MS.gene32581.t1 | AT2G35160 | 35.498 | 462 | 254 | 12 | 56 | 511 | 345 | 768 | 2.58e-81 | 270 |
MS.gene32581.t1 | AT2G35160 | 35.498 | 462 | 254 | 12 | 56 | 511 | 345 | 768 | 2.58e-81 | 270 |
MS.gene32581.t1 | AT2G35160 | 35.498 | 462 | 254 | 12 | 56 | 511 | 345 | 768 | 2.58e-81 | 270 |
MS.gene32581.t1 | AT2G35160 | 35.498 | 462 | 254 | 12 | 56 | 511 | 345 | 768 | 2.58e-81 | 270 |
MS.gene32581.t1 | AT5G13960 | 34.702 | 487 | 287 | 12 | 47 | 511 | 121 | 598 | 4.46e-81 | 265 |
MS.gene32581.t1 | AT5G13960 | 34.728 | 478 | 276 | 11 | 55 | 511 | 2 | 464 | 8.15e-81 | 261 |
MS.gene32581.t1 | AT2G24740 | 34.839 | 465 | 272 | 14 | 52 | 509 | 285 | 725 | 5.87e-67 | 230 |
MS.gene32581.t1 | AT5G47150 | 37.387 | 222 | 129 | 5 | 10 | 229 | 111 | 324 | 3.86e-29 | 117 |
MS.gene32581.t1 | AT5G47160 | 35.349 | 215 | 127 | 6 | 14 | 225 | 202 | 407 | 1.80e-25 | 108 |
MS.gene32581.t1 | AT5G47160 | 35.349 | 215 | 127 | 6 | 14 | 225 | 202 | 407 | 1.80e-25 | 108 |
MS.gene32581.t1 | AT5G47160 | 35.349 | 215 | 127 | 6 | 14 | 225 | 202 | 407 | 1.80e-25 | 108 |
MS.gene32581.t1 | AT2G05900 | 36.471 | 170 | 104 | 3 | 117 | 286 | 26 | 191 | 2.69e-21 | 95.1 |
MS.gene32581.t1 | AT2G23740 | 31.579 | 190 | 106 | 5 | 325 | 507 | 1184 | 1356 | 9.44e-19 | 90.9 |
MS.gene32581.t1 | AT2G23740 | 31.579 | 190 | 106 | 5 | 325 | 507 | 1184 | 1356 | 9.44e-19 | 90.9 |
MS.gene32581.t1 | AT2G23740 | 31.579 | 190 | 106 | 5 | 325 | 507 | 1184 | 1356 | 9.44e-19 | 90.9 |
MS.gene32581.t1 | AT2G23740 | 31.579 | 190 | 106 | 5 | 325 | 507 | 1177 | 1349 | 1.06e-18 | 90.5 |
MS.gene32581.t1 | AT1G57820 | 32.484 | 157 | 92 | 4 | 80 | 229 | 277 | 426 | 4.79e-15 | 78.6 |
MS.gene32581.t1 | AT1G57820 | 32.484 | 157 | 92 | 4 | 80 | 229 | 277 | 426 | 4.79e-15 | 78.6 |
MS.gene32581.t1 | AT3G03750 | 29.808 | 208 | 120 | 6 | 301 | 507 | 141 | 323 | 8.69e-15 | 76.3 |
MS.gene32581.t1 | AT2G23740 | 46.914 | 81 | 40 | 2 | 325 | 403 | 1184 | 1263 | 4.27e-14 | 75.9 |
MS.gene32581.t1 | AT2G23740 | 46.914 | 81 | 40 | 2 | 325 | 403 | 1184 | 1263 | 4.27e-14 | 75.9 |
MS.gene32581.t1 | AT1G57820 | 31.818 | 154 | 94 | 4 | 80 | 229 | 277 | 423 | 5.91e-14 | 75.1 |
Find 141 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTACTAGTGTGATTGTTTC+TGG | 0.079078 | 1.3:-19560719 | MS.gene32581:CDS |
GTTGGAAGTGTTTAGATCTT+TGG | 0.227926 | 1.3:-19559985 | MS.gene32581:CDS |
CTATGATTCGGTTCGTGTTT+TGG | 0.242077 | 1.3:-19560990 | MS.gene32581:CDS |
AGAAGCCCGCTTTGACTATA+AGG | 0.293128 | 1.3:+19560104 | None:intergenic |
AGAGATTTCAGCCTTGATTA+TGG | 0.322787 | 1.3:-19559582 | MS.gene32581:CDS |
AGGATTGTTGGCGCGATTCC+CGG | 0.341645 | 1.3:-19560863 | MS.gene32581:CDS |
CCCCATTCCGTCCACCTATT+CGG | 0.341830 | 1.3:+19559822 | None:intergenic |
CCATTTGAACTCATACTTCC+AGG | 0.343923 | 1.3:+19560752 | None:intergenic |
TCAAGCTAAGATGGGTAGTT+TGG | 0.350493 | 1.3:-19560396 | MS.gene32581:CDS |
TTGTGTGTGGTTGGTTTACA+TGG | 0.355893 | 1.3:-19560803 | MS.gene32581:CDS |
GGATGGAGCGTGTTGGTATA+AGG | 0.360343 | 1.3:-19560295 | MS.gene32581:CDS |
GTGTTTAGATCTTTGGAAAC+TGG | 0.365217 | 1.3:-19559978 | MS.gene32581:CDS |
ATGGAGAGGAGTATGCATTA+TGG | 0.365705 | 1.3:-19560581 | MS.gene32581:CDS |
TAGATCTTTGGAAACTGGTT+GGG | 0.370326 | 1.3:-19559973 | MS.gene32581:CDS |
TGCATTTGTTTCATGAGAAA+TGG | 0.371968 | 1.3:-19560137 | MS.gene32581:CDS |
CTTGTTCGAATGACGGATCT+AGG | 0.373790 | 1.3:-19561064 | MS.gene32581:CDS |
GTAAATGTGTGGGCAGTTGC+AGG | 0.381411 | 1.3:-19560166 | MS.gene32581:CDS |
GATGTTGGTAAAAGTGGTTT+TGG | 0.382231 | 1.3:-19560452 | MS.gene32581:CDS |
TCCATCCCGTTGGAAATATC+AGG | 0.385210 | 1.3:+19560311 | None:intergenic |
GAAGGTACTTCTTCAACTTC+AGG | 0.391726 | 1.3:-19560524 | MS.gene32581:CDS |
TCCGAATAGGTGGACGGAAT+GGG | 0.393302 | 1.3:-19559823 | MS.gene32581:CDS |
CATTTATATGCGAGTACAGC+GGG | 0.395589 | 1.3:-19559917 | MS.gene32581:CDS |
TAAATGTGCCAGCTTGAATA+AGG | 0.408878 | 1.3:+19559934 | None:intergenic |
GCGATTCCCGGGATTTGTAT+TGG | 0.410719 | 1.3:-19560851 | MS.gene32581:CDS |
TGGAGAGGAGTATGCATTAT+GGG | 0.415278 | 1.3:-19560580 | MS.gene32581:CDS |
TTCTGCTACGATGAGGAGTC+GGG | 0.432959 | 1.3:-19560909 | MS.gene32581:CDS |
GGATTGTTGGCGCGATTCCC+GGG | 0.437413 | 1.3:-19560862 | MS.gene32581:CDS |
GCTGGGATCGATTATTTGCC+TGG | 0.440591 | 1.3:-19560770 | MS.gene32581:CDS |
GATTGTTTCTGGTGGATATG+AGG | 0.443033 | 1.3:-19560708 | MS.gene32581:CDS |
GGTAAGGTTTATGTTTATGA+TGG | 0.443436 | 1.3:-19560503 | MS.gene32581:CDS |
CACAACAAGGGCTTAATCAT+AGG | 0.446724 | 1.3:-19560007 | MS.gene32581:CDS |
GTAGCTGTCCGCCTCATTGT+CGG | 0.447353 | 1.3:-19560040 | MS.gene32581:CDS |
TCCCTTTGAGTTTCATCCAA+GGG | 0.453527 | 1.3:-19560204 | MS.gene32581:CDS |
AAATTCAAAGGAAGAATTGA+TGG | 0.457852 | 1.3:+19559756 | None:intergenic |
GACTAGGATGGTCTATGATT+CGG | 0.457902 | 1.3:-19561002 | MS.gene32581:CDS |
TGTATAAGATTGTTGAAAGC+TGG | 0.458955 | 1.3:-19560478 | MS.gene32581:CDS |
CCTGGAAGTATGAGTTCAAA+TGG | 0.460753 | 1.3:-19560752 | MS.gene32581:CDS |
GATTGATGATCAAGCTAAGA+TGG | 0.462647 | 1.3:-19560405 | MS.gene32581:CDS |
AATCGCAATATGAGGATTGT+TGG | 0.469750 | 1.3:-19560875 | MS.gene32581:CDS |
CGATGAGGAGTCGGGGATTG+TGG | 0.470344 | 1.3:-19560901 | MS.gene32581:CDS |
ACAAACTGAACCATCAGATT+AGG | 0.470806 | 1.3:+19559675 | None:intergenic |
ATACACATAGGTTTATAATC+AGG | 0.471074 | 1.3:+19560341 | None:intergenic |
CACATCACCAATACAAATCC+CGG | 0.471185 | 1.3:+19560844 | None:intergenic |
TGCATTATGGGATTGAGGTA+AGG | 0.472341 | 1.3:-19560568 | MS.gene32581:CDS |
TTCCGAATAGGTGGACGGAA+TGG | 0.473704 | 1.3:-19559824 | MS.gene32581:CDS |
TACTTCTTCAACTTCAGGTA+AGG | 0.478043 | 1.3:-19560519 | MS.gene32581:CDS |
AGGTGATGTTATTATTCTCT+CGG | 0.481641 | 1.3:-19560672 | MS.gene32581:CDS |
GTTATTATTCTCTCGGGTCA+TGG | 0.481758 | 1.3:-19560665 | MS.gene32581:CDS |
AGGATGGAGTTGTGTGTGGT+TGG | 0.488005 | 1.3:-19560812 | MS.gene32581:CDS |
ATCGGAAAAGCGTCAAATGC+GGG | 0.499046 | 1.3:-19561038 | MS.gene32581:CDS |
AATGACGGATCTAGGGTTAT+CGG | 0.500590 | 1.3:-19561056 | MS.gene32581:CDS |
TGTGGCTGAATCGCAATATG+AGG | 0.502406 | 1.3:-19560883 | MS.gene32581:CDS |
AGATCTTTGGAAACTGGTTG+GGG | 0.504345 | 1.3:-19559972 | MS.gene32581:CDS |
GGTGATGTTATTATTCTCTC+GGG | 0.504399 | 1.3:-19560671 | MS.gene32581:CDS |
ATTGTTTCTGGTGGATATGA+GGG | 0.508794 | 1.3:-19560707 | MS.gene32581:CDS |
TGGTGTGATGTTGGTAAAAG+TGG | 0.509931 | 1.3:-19560458 | MS.gene32581:CDS |
TTCCCTTTGAGTTTCATCCA+AGG | 0.510250 | 1.3:-19560205 | MS.gene32581:CDS |
CTTCTGCTACGATGAGGAGT+CGG | 0.510457 | 1.3:-19560910 | MS.gene32581:CDS |
TATCTCCTGATATTTCCAAC+GGG | 0.517150 | 1.3:-19560316 | MS.gene32581:CDS |
TCATTTGACCTTATTCAAGC+TGG | 0.519192 | 1.3:-19559942 | MS.gene32581:CDS |
TAAAACTATGCTGTTTGCGA+TGG | 0.519235 | 1.3:-19559622 | MS.gene32581:CDS |
CCCCTTGGATGAAACTCAAA+GGG | 0.519814 | 1.3:+19560203 | None:intergenic |
CGGAACCGTGTTACACAACA+AGG | 0.524134 | 1.3:-19560020 | MS.gene32581:CDS |
ACAATCACACTAGTAGCAAT+CGG | 0.525852 | 1.3:+19560725 | None:intergenic |
TCTCTCGGGTCATGGTGGGC+AGG | 0.526040 | 1.3:-19560657 | MS.gene32581:CDS |
TGGAAACTGGTTGGGGAGTG+AGG | 0.530566 | 1.3:-19559965 | MS.gene32581:CDS |
TGAGGCGGACAGCTACAATC+AGG | 0.531632 | 1.3:+19560047 | None:intergenic |
GAGTATGCATTATGGGATTG+AGG | 0.534486 | 1.3:-19560573 | MS.gene32581:CDS |
GCTTTCCTTATAGTCAAAGC+GGG | 0.536291 | 1.3:-19560109 | MS.gene32581:CDS |
GTTGAAAGCTGGTGTGATGT+TGG | 0.536898 | 1.3:-19560467 | MS.gene32581:CDS |
ACTAGTGTGATTGTTTCTGG+TGG | 0.538664 | 1.3:-19560716 | MS.gene32581:CDS |
TCATCAGAAGCTAGAAGGAG+GGG | 0.538962 | 1.3:-19560612 | MS.gene32581:CDS |
TTAGATCTTTGGAAACTGGT+TGG | 0.541400 | 1.3:-19559974 | MS.gene32581:CDS |
TTGGATATGGCTGAAGATGA+AGG | 0.542424 | 1.3:-19560971 | MS.gene32581:CDS |
TTGTTCGAATGACGGATCTA+GGG | 0.543701 | 1.3:-19561063 | MS.gene32581:CDS |
TCCTGATATTTCCAACGGGA+TGG | 0.545378 | 1.3:-19560312 | MS.gene32581:CDS |
GCATTATGGGATTGAGGTAA+GGG | 0.545569 | 1.3:-19560567 | MS.gene32581:CDS |
TTATTCTCTCGGGTCATGGT+GGG | 0.547783 | 1.3:-19560661 | MS.gene32581:CDS |
TCAAGGCTGAAATCTCTCAA+TGG | 0.553800 | 1.3:+19559588 | None:intergenic |
CAAAGCGGGCTTCTCTTGAA+AGG | 0.554951 | 1.3:-19560095 | MS.gene32581:CDS |
ACAAGGGCTTAATCATAGGT+TGG | 0.555207 | 1.3:-19560003 | MS.gene32581:CDS |
AGAAGGAGGGGATCTTGCTA+TGG | 0.555793 | 1.3:-19560600 | MS.gene32581:CDS |
ATATCTCCTGATATTTCCAA+CGG | 0.556018 | 1.3:-19560317 | MS.gene32581:CDS |
GCTTCTCTTGAAAGGAAAGC+CGG | 0.556611 | 1.3:-19560087 | MS.gene32581:CDS |
AGATCCGTCATTCGAACAAG+TGG | 0.563268 | 1.3:+19561067 | None:intergenic |
CCGAATAGGTGGACGGAATG+GGG | 0.564405 | 1.3:-19559822 | MS.gene32581:CDS |
GAAATCTCTCAATGGAGGGA+TGG | 0.567762 | 1.3:+19559596 | None:intergenic |
TTACATGGTGAACCACAAGC+TGG | 0.570814 | 1.3:-19560788 | MS.gene32581:CDS |
CTCTGGACGTGTCTAGAATG+AGG | 0.571022 | 1.3:-19559731 | MS.gene32581:CDS |
CCCTTTGAGTTTCATCCAAG+GGG | 0.573842 | 1.3:-19560203 | MS.gene32581:CDS |
TTCATCAGAAGCTAGAAGGA+GGG | 0.573844 | 1.3:-19560613 | MS.gene32581:CDS |
GTATAGGATGGAGTTGTGTG+TGG | 0.574388 | 1.3:-19560816 | MS.gene32581:CDS |
GGCTGAAATCTCTCAATGGA+GGG | 0.575518 | 1.3:+19559592 | None:intergenic |
TACATGGTGAACCACAAGCT+GGG | 0.577042 | 1.3:-19560787 | MS.gene32581:CDS |
GGGATGTTGTTCGAAGGACT+AGG | 0.579467 | 1.3:-19561018 | MS.gene32581:CDS |
TAGCTCAACTCCTAATCTGA+TGG | 0.582333 | 1.3:-19559685 | MS.gene32581:CDS |
ATATTCAATTGCGCATTGCG+AGG | 0.586032 | 1.3:+19559532 | None:intergenic |
CATCAGCTACACCATAATCA+AGG | 0.586256 | 1.3:+19559571 | None:intergenic |
ATGGTGGGCAGGATAAGAAT+CGG | 0.592281 | 1.3:-19560646 | MS.gene32581:CDS |
ATTATTCTCTCGGGTCATGG+TGG | 0.592834 | 1.3:-19560662 | MS.gene32581:CDS |
ATTGATGATCAAGCTAAGAT+GGG | 0.593619 | 1.3:-19560404 | MS.gene32581:CDS |
GGAAGAATTGATGGATACGA+AGG | 0.593629 | 1.3:+19559765 | None:intergenic |
TAAGCCCTTGTTGTGTAACA+CGG | 0.598036 | 1.3:+19560015 | None:intergenic |
AGGCTGAAATCTCTCAATGG+AGG | 0.598790 | 1.3:+19559591 | None:intergenic |
GATCCCACTTGTTCGAATGA+CGG | 0.598813 | 1.3:-19561071 | MS.gene32581:CDS |
ACCAACACGCTCCATCCCGT+TGG | 0.599403 | 1.3:+19560301 | None:intergenic |
ACAGCGGGGTTGTTCTAACA+AGG | 0.600545 | 1.3:-19559902 | MS.gene32581:CDS |
TTTCATCAGAAGCTAGAAGG+AGG | 0.601171 | 1.3:-19560614 | MS.gene32581:CDS |
GCAGAAATTATGACTATGAG+TGG | 0.602784 | 1.3:-19559873 | MS.gene32581:CDS |
ACGTCCAGAGCAAAATTCAA+AGG | 0.609054 | 1.3:+19559744 | None:intergenic |
ACATCACCAATACAAATCCC+GGG | 0.611261 | 1.3:+19560845 | None:intergenic |
TGTGTGGGCAGTTGCAGGGA+AGG | 0.614573 | 1.3:-19560161 | MS.gene32581:CDS |
GAGGGGATCTTGCTATGGAG+AGG | 0.622960 | 1.3:-19560595 | MS.gene32581:CDS |
TCAGGAGATATAATACACAT+AGG | 0.624086 | 1.3:+19560329 | None:intergenic |
TGAGACAGGTTGTAAATGTG+TGG | 0.625021 | 1.3:-19560177 | MS.gene32581:CDS |
TATCGGAAAAGCGTCAAATG+CGG | 0.625063 | 1.3:-19561039 | MS.gene32581:CDS |
ATCCGCGCTGTGAGGTACGA+AGG | 0.625946 | 1.3:-19560542 | MS.gene32581:CDS |
GGAAGATACTCAAAATACAT+CGG | 0.630650 | 1.3:+19560242 | None:intergenic |
AGAATTGATGGATACGAAGG+AGG | 0.631640 | 1.3:+19559768 | None:intergenic |
AAATAATCGATCCCAGCTTG+TGG | 0.632977 | 1.3:+19560776 | None:intergenic |
TATGAGGGTGATGTTGATGA+AGG | 0.637266 | 1.3:-19560692 | MS.gene32581:CDS |
AGCTTTCCTTATAGTCAAAG+CGG | 0.639771 | 1.3:-19560110 | MS.gene32581:CDS |
TAAATGTGTGGGCAGTTGCA+GGG | 0.639917 | 1.3:-19560165 | MS.gene32581:CDS |
AAATGCGGGATGTTGTTCGA+AGG | 0.647284 | 1.3:-19561024 | MS.gene32581:CDS |
GAGACAGGTTGTAAATGTGT+GGG | 0.652888 | 1.3:-19560176 | MS.gene32581:CDS |
TGTTGTTCGAAGGACTAGGA+TGG | 0.654135 | 1.3:-19561014 | MS.gene32581:CDS |
TGAAAGCTTCTGCTACGATG+AGG | 0.658793 | 1.3:-19560916 | MS.gene32581:CDS |
CCTTTGAGTTTCATCCAAGG+GGG | 0.661963 | 1.3:-19560202 | MS.gene32581:CDS |
TCCAACGGGATGGAGCGTGT+TGG | 0.665494 | 1.3:-19560302 | MS.gene32581:CDS |
TAAGGGTCATCCGCGCTGTG+AGG | 0.665597 | 1.3:-19560550 | MS.gene32581:CDS |
GATCCGTCATTCGAACAAGT+GGG | 0.669479 | 1.3:+19561068 | None:intergenic |
ACATTTATATGCGAGTACAG+CGG | 0.676169 | 1.3:-19559918 | MS.gene32581:CDS |
ACACGGTTCCGACAATGAGG+CGG | 0.681770 | 1.3:+19560032 | None:intergenic |
TCTGCTACGATGAGGAGTCG+GGG | 0.683469 | 1.3:-19560908 | MS.gene32581:CDS |
GTGGGCAGGATAAGAATCGG+AGG | 0.693208 | 1.3:-19560643 | MS.gene32581:CDS |
CAGCGGGGTTGTTCTAACAA+GGG | 0.700564 | 1.3:-19559901 | MS.gene32581:CDS |
GTAACACGGTTCCGACAATG+AGG | 0.703986 | 1.3:+19560029 | None:intergenic |
CGTGTCTAGAATGAGGAATG+TGG | 0.710491 | 1.3:-19559724 | MS.gene32581:CDS |
ATTTATATGCGAGTACAGCG+GGG | 0.724918 | 1.3:-19559916 | MS.gene32581:CDS |
TACCTTCGTACCTCACAGCG+CGG | 0.749117 | 1.3:+19560540 | None:intergenic |
GGAACCGTGTTACACAACAA+GGG | 0.763258 | 1.3:-19560019 | MS.gene32581:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAATTCAAAGGAAGAATTGA+TGG | + | chr1.3:19560862-19560881 | None:intergenic | 25.0% |
! | ATACACATAGGTTTATAATC+AGG | + | chr1.3:19560277-19560296 | None:intergenic | 25.0% |
!!! | TTTTTAAGTTTATGTTGTCG+AGG | - | chr1.3:19560188-19560207 | MS.gene32581:CDS | 25.0% |
AGGTGATGTTATTATTCTCT+CGG | - | chr1.3:19559943-19559962 | MS.gene32581:CDS | 30.0% | |
ATATCTCCTGATATTTCCAA+CGG | - | chr1.3:19560298-19560317 | MS.gene32581:CDS | 30.0% | |
GGAAGATACTCAAAATACAT+CGG | + | chr1.3:19560376-19560395 | None:intergenic | 30.0% | |
GGTAAGGTTTATGTTTATGA+TGG | - | chr1.3:19560112-19560131 | MS.gene32581:CDS | 30.0% | |
TCAGGAGATATAATACACAT+AGG | + | chr1.3:19560289-19560308 | None:intergenic | 30.0% | |
TGCATTTGTTTCATGAGAAA+TGG | - | chr1.3:19560478-19560497 | MS.gene32581:CDS | 30.0% | |
TGTATAAGATTGTTGAAAGC+TGG | - | chr1.3:19560137-19560156 | MS.gene32581:CDS | 30.0% | |
! | ATTGATGATCAAGCTAAGAT+GGG | - | chr1.3:19560211-19560230 | MS.gene32581:CDS | 30.0% |
!! | GTATTTTGAGTATCTTCCTA+GGG | - | chr1.3:19560378-19560397 | MS.gene32581:CDS | 30.0% |
!! | TGATGTGTTTTTGTATAGGA+TGG | - | chr1.3:19559787-19559806 | MS.gene32581:CDS | 30.0% |
!! | TGTATTTTGAGTATCTTCCT+AGG | - | chr1.3:19560377-19560396 | MS.gene32581:CDS | 30.0% |
!!! | TTGGTGATGTGTTTTTGTAT+AGG | - | chr1.3:19559783-19559802 | MS.gene32581:CDS | 30.0% |
AATCGCAATATGAGGATTGT+TGG | - | chr1.3:19559740-19559759 | MS.gene32581:CDS | 35.0% | |
ACAAACTGAACCATCAGATT+AGG | + | chr1.3:19560943-19560962 | None:intergenic | 35.0% | |
ACAATCACACTAGTAGCAAT+CGG | + | chr1.3:19559893-19559912 | None:intergenic | 35.0% | |
ACATTTATATGCGAGTACAG+CGG | - | chr1.3:19560697-19560716 | MS.gene32581:CDS | 35.0% | |
AGAGATTTCAGCCTTGATTA+TGG | - | chr1.3:19561033-19561052 | MS.gene32581:CDS | 35.0% | |
AGCTTTCCTTATAGTCAAAG+CGG | - | chr1.3:19560505-19560524 | MS.gene32581:CDS | 35.0% | |
CACCTATTCGGAAAAAGATT+CGG | + | chr1.3:19560784-19560803 | None:intergenic | 35.0% | |
GCAGAAATTATGACTATGAG+TGG | - | chr1.3:19560742-19560761 | MS.gene32581:CDS | 35.0% | |
GGTGATGTTATTATTCTCTC+GGG | - | chr1.3:19559944-19559963 | MS.gene32581:CDS | 35.0% | |
TAAATGTGCCAGCTTGAATA+AGG | + | chr1.3:19560684-19560703 | None:intergenic | 35.0% | |
TACTTCTTCAACTTCAGGTA+AGG | - | chr1.3:19560096-19560115 | MS.gene32581:CDS | 35.0% | |
TATCTCCTGATATTTCCAAC+GGG | - | chr1.3:19560299-19560318 | MS.gene32581:CDS | 35.0% | |
TCATTTGACCTTATTCAAGC+TGG | - | chr1.3:19560673-19560692 | MS.gene32581:CDS | 35.0% | |
! | ATCCGAATCTTTTTCCGAAT+AGG | - | chr1.3:19560779-19560798 | MS.gene32581:CDS | 35.0% |
! | GATTGATGATCAAGCTAAGA+TGG | - | chr1.3:19560210-19560229 | MS.gene32581:CDS | 35.0% |
! | GTGTTTAGATCTTTGGAAAC+TGG | - | chr1.3:19560637-19560656 | MS.gene32581:CDS | 35.0% |
! | GTTTTTCATCAGAAGCTAGA+AGG | - | chr1.3:19559998-19560017 | MS.gene32581:CDS | 35.0% |
! | TAAAACTATGCTGTTTGCGA+TGG | - | chr1.3:19560993-19561012 | MS.gene32581:CDS | 35.0% |
! | TAGATCTTTGGAAACTGGTT+GGG | - | chr1.3:19560642-19560661 | MS.gene32581:CDS | 35.0% |
! | TCTTCCTTTGAATTTTGCTC+TGG | - | chr1.3:19560867-19560886 | MS.gene32581:CDS | 35.0% |
! | TTAGATCTTTGGAAACTGGT+TGG | - | chr1.3:19560641-19560660 | MS.gene32581:CDS | 35.0% |
!! | ATTGTTTCTGGTGGATATGA+GGG | - | chr1.3:19559908-19559927 | MS.gene32581:CDS | 35.0% |
!! | GATGTTGGTAAAAGTGGTTT+TGG | - | chr1.3:19560163-19560182 | MS.gene32581:CDS | 35.0% |
!! | GTTGGAAGTGTTTAGATCTT+TGG | - | chr1.3:19560630-19560649 | MS.gene32581:CDS | 35.0% |
!! | TCGCAAACAGCATAGTTTTA+AGG | + | chr1.3:19560993-19561012 | None:intergenic | 35.0% |
!!! | GATGGGTAGTTTGGTTTTAA+AGG | - | chr1.3:19560228-19560247 | MS.gene32581:CDS | 35.0% |
AAATAATCGATCCCAGCTTG+TGG | + | chr1.3:19559842-19559861 | None:intergenic | 40.0% | |
AAGGGAAAAAAAGTAGCCCT+AGG | + | chr1.3:19560397-19560416 | None:intergenic | 40.0% | |
ACAAGGGCTTAATCATAGGT+TGG | - | chr1.3:19560612-19560631 | MS.gene32581:CDS | 40.0% | |
ACATCACCAATACAAATCCC+GGG | + | chr1.3:19559773-19559792 | None:intergenic | 40.0% | |
ACGTCCAGAGCAAAATTCAA+AGG | + | chr1.3:19560874-19560893 | None:intergenic | 40.0% | |
ATTTATATGCGAGTACAGCG+GGG | - | chr1.3:19560699-19560718 | MS.gene32581:CDS | 40.0% | |
CACAACAAGGGCTTAATCAT+AGG | - | chr1.3:19560608-19560627 | MS.gene32581:CDS | 40.0% | |
CACATCACCAATACAAATCC+CGG | + | chr1.3:19559774-19559793 | None:intergenic | 40.0% | |
CATCAGCTACACCATAATCA+AGG | + | chr1.3:19561047-19561066 | None:intergenic | 40.0% | |
CATTTATATGCGAGTACAGC+GGG | - | chr1.3:19560698-19560717 | MS.gene32581:CDS | 40.0% | |
CCATTTGAACTCATACTTCC+AGG | + | chr1.3:19559866-19559885 | None:intergenic | 40.0% | |
GACTAGGATGGTCTATGATT+CGG | - | chr1.3:19559613-19559632 | MS.gene32581:CDS | 40.0% | |
GAGACAGGTTGTAAATGTGT+GGG | - | chr1.3:19560439-19560458 | MS.gene32581:CDS | 40.0% | |
GAGTATGCATTATGGGATTG+AGG | - | chr1.3:19560042-19560061 | MS.gene32581:CDS | 40.0% | |
GCATTATGGGATTGAGGTAA+GGG | - | chr1.3:19560048-19560067 | MS.gene32581:CDS | 40.0% | |
GCTACTAGTGTGATTGTTTC+TGG | - | chr1.3:19559896-19559915 | MS.gene32581:CDS | 40.0% | |
GCTTTCCTTATAGTCAAAGC+GGG | - | chr1.3:19560506-19560525 | MS.gene32581:CDS | 40.0% | |
GGACCACATTCAAAAATGAC+CGG | + | chr1.3:19560550-19560569 | None:intergenic | 40.0% | |
GTTATTATTCTCTCGGGTCA+TGG | - | chr1.3:19559950-19559969 | MS.gene32581:CDS | 40.0% | |
TAGCTCAACTCCTAATCTGA+TGG | - | chr1.3:19560930-19560949 | MS.gene32581:CDS | 40.0% | |
TCAAGCTAAGATGGGTAGTT+TGG | - | chr1.3:19560219-19560238 | MS.gene32581:CDS | 40.0% | |
TCAAGGCTGAAATCTCTCAA+TGG | + | chr1.3:19561030-19561049 | None:intergenic | 40.0% | |
TGAGACAGGTTGTAAATGTG+TGG | - | chr1.3:19560438-19560457 | MS.gene32581:CDS | 40.0% | |
TGCATTATGGGATTGAGGTA+AGG | - | chr1.3:19560047-19560066 | MS.gene32581:CDS | 40.0% | |
TTCATCAGAAGCTAGAAGGA+GGG | - | chr1.3:19560002-19560021 | MS.gene32581:CDS | 40.0% | |
TTGGATATGGCTGAAGATGA+AGG | - | chr1.3:19559644-19559663 | MS.gene32581:CDS | 40.0% | |
TTTCATCAGAAGCTAGAAGG+AGG | - | chr1.3:19560001-19560020 | MS.gene32581:CDS | 40.0% | |
! | AGAATTGATGGATACGAAGG+AGG | + | chr1.3:19560850-19560869 | None:intergenic | 40.0% |
! | AGATCTTTGGAAACTGGTTG+GGG | - | chr1.3:19560643-19560662 | MS.gene32581:CDS | 40.0% |
! | ATGGAGAGGAGTATGCATTA+TGG | - | chr1.3:19560034-19560053 | MS.gene32581:CDS | 40.0% |
! | CCTGGAAGTATGAGTTCAAA+TGG | - | chr1.3:19559863-19559882 | MS.gene32581:CDS | 40.0% |
! | CGAATCTTTTTCCGAATAGG+TGG | - | chr1.3:19560782-19560801 | MS.gene32581:CDS | 40.0% |
! | GGAAGAATTGATGGATACGA+AGG | + | chr1.3:19560853-19560872 | None:intergenic | 40.0% |
! | TAAGCCCTTGTTGTGTAACA+CGG | + | chr1.3:19560603-19560622 | None:intergenic | 40.0% |
! | TATGAGGGTGATGTTGATGA+AGG | - | chr1.3:19559923-19559942 | MS.gene32581:CDS | 40.0% |
! | TCCCTTTGAGTTTCATCCAA+GGG | - | chr1.3:19560411-19560430 | MS.gene32581:CDS | 40.0% |
! | TCTTTTTCCGAATAGGTGGA+CGG | - | chr1.3:19560786-19560805 | MS.gene32581:CDS | 40.0% |
! | TGGAGAGGAGTATGCATTAT+GGG | - | chr1.3:19560035-19560054 | MS.gene32581:CDS | 40.0% |
! | TGGTGTGATGTTGGTAAAAG+TGG | - | chr1.3:19560157-19560176 | MS.gene32581:CDS | 40.0% |
! | TTCCCTTTGAGTTTCATCCA+AGG | - | chr1.3:19560410-19560429 | MS.gene32581:CDS | 40.0% |
!! | AATGACGGATCTAGGGTTAT+CGG | - | chr1.3:19559559-19559578 | MS.gene32581:CDS | 40.0% |
!! | ACTAGTGTGATTGTTTCTGG+TGG | - | chr1.3:19559899-19559918 | MS.gene32581:CDS | 40.0% |
!! | GAAGGTACTTCTTCAACTTC+AGG | - | chr1.3:19560091-19560110 | MS.gene32581:CDS | 40.0% |
!! | GATTGTTTCTGGTGGATATG+AGG | - | chr1.3:19559907-19559926 | MS.gene32581:CDS | 40.0% |
!! | TATCGGAAAAGCGTCAAATG+CGG | - | chr1.3:19559576-19559595 | MS.gene32581:CDS | 40.0% |
!! | TTCGGTTCGTGTTTTGGATA+TGG | - | chr1.3:19559631-19559650 | MS.gene32581:CDS | 40.0% |
!! | TTGTGTGTGGTTGGTTTACA+TGG | - | chr1.3:19559812-19559831 | MS.gene32581:CDS | 40.0% |
!! | TTGTTCGAATGACGGATCTA+GGG | - | chr1.3:19559552-19559571 | MS.gene32581:CDS | 40.0% |
!!! | AAGCCGGTCATTTTTGAATG+TGG | - | chr1.3:19560544-19560563 | MS.gene32581:CDS | 40.0% |
!!! | CTATGATTCGGTTCGTGTTT+TGG | - | chr1.3:19559625-19559644 | MS.gene32581:CDS | 40.0% |
!!! | GGGTAGTTTGGTTTTAAAGG+AGG | - | chr1.3:19560231-19560250 | MS.gene32581:CDS | 40.0% |
!!! | TAAAGGAGGCTTTTTTGCGT+AGG | - | chr1.3:19560245-19560264 | MS.gene32581:CDS | 40.0% |
AAATGCGGGATGTTGTTCGA+AGG | - | chr1.3:19559591-19559610 | MS.gene32581:CDS | 45.0% | |
AGAAGCCCGCTTTGACTATA+AGG | + | chr1.3:19560514-19560533 | None:intergenic | 45.0% | |
AGATCCGTCATTCGAACAAG+TGG | + | chr1.3:19559551-19559570 | None:intergenic | 45.0% | |
AGGCTGAAATCTCTCAATGG+AGG | + | chr1.3:19561027-19561046 | None:intergenic | 45.0% | |
ATTATTCTCTCGGGTCATGG+TGG | - | chr1.3:19559953-19559972 | MS.gene32581:CDS | 45.0% | |
CCCCTTGGATGAAACTCAAA+GGG | + | chr1.3:19560415-19560434 | None:intergenic | 45.0% | |
GAAATCTCTCAATGGAGGGA+TGG | + | chr1.3:19561022-19561041 | None:intergenic | 45.0% | |
GATCCCACTTGTTCGAATGA+CGG | - | chr1.3:19559544-19559563 | MS.gene32581:CDS | 45.0% | |
GATCCGTCATTCGAACAAGT+GGG | + | chr1.3:19559550-19559569 | None:intergenic | 45.0% | |
GCTTCTCTTGAAAGGAAAGC+CGG | - | chr1.3:19560528-19560547 | MS.gene32581:CDS | 45.0% | |
GGAACCGTGTTACACAACAA+GGG | - | chr1.3:19560596-19560615 | MS.gene32581:CDS | 45.0% | |
GGCTGAAATCTCTCAATGGA+GGG | + | chr1.3:19561026-19561045 | None:intergenic | 45.0% | |
GTATAGGATGGAGTTGTGTG+TGG | - | chr1.3:19559799-19559818 | MS.gene32581:CDS | 45.0% | |
GTTGAAAGCTGGTGTGATGT+TGG | - | chr1.3:19560148-19560167 | MS.gene32581:CDS | 45.0% | |
TAAATGTGTGGGCAGTTGCA+GGG | - | chr1.3:19560450-19560469 | MS.gene32581:CDS | 45.0% | |
TACATGGTGAACCACAAGCT+GGG | - | chr1.3:19559828-19559847 | MS.gene32581:CDS | 45.0% | |
TCATCAGAAGCTAGAAGGAG+GGG | - | chr1.3:19560003-19560022 | MS.gene32581:CDS | 45.0% | |
TCCATCCCGTTGGAAATATC+AGG | + | chr1.3:19560307-19560326 | None:intergenic | 45.0% | |
TCCTGATATTTCCAACGGGA+TGG | - | chr1.3:19560303-19560322 | MS.gene32581:CDS | 45.0% | |
TGAAAGCTTCTGCTACGATG+AGG | - | chr1.3:19559699-19559718 | MS.gene32581:CDS | 45.0% | |
TGTGGCTGAATCGCAATATG+AGG | - | chr1.3:19559732-19559751 | MS.gene32581:CDS | 45.0% | |
TGTTGTTCGAAGGACTAGGA+TGG | - | chr1.3:19559601-19559620 | MS.gene32581:CDS | 45.0% | |
TTACATGGTGAACCACAAGC+TGG | - | chr1.3:19559827-19559846 | MS.gene32581:CDS | 45.0% | |
TTATTCTCTCGGGTCATGGT+GGG | - | chr1.3:19559954-19559973 | MS.gene32581:CDS | 45.0% | |
! | CCCTTTGAGTTTCATCCAAG+GGG | - | chr1.3:19560412-19560431 | MS.gene32581:CDS | 45.0% |
! | CCTTTGAGTTTCATCCAAGG+GGG | - | chr1.3:19560413-19560432 | MS.gene32581:CDS | 45.0% |
! | CGTGTCTAGAATGAGGAATG+TGG | - | chr1.3:19560891-19560910 | MS.gene32581:CDS | 45.0% |
!! | ATCGGAAAAGCGTCAAATGC+GGG | - | chr1.3:19559577-19559596 | MS.gene32581:CDS | 45.0% |
!! | ATGGTGGGCAGGATAAGAAT+CGG | - | chr1.3:19559969-19559988 | MS.gene32581:CDS | 45.0% |
!! | CTTGTTCGAATGACGGATCT+AGG | - | chr1.3:19559551-19559570 | MS.gene32581:CDS | 45.0% |
ACAGCGGGGTTGTTCTAACA+AGG | - | chr1.3:19560713-19560732 | MS.gene32581:CDS | 50.0% | |
AGAAGGAGGGGATCTTGCTA+TGG | - | chr1.3:19560015-19560034 | MS.gene32581:CDS | 50.0% | |
AGGATGGAGTTGTGTGTGGT+TGG | - | chr1.3:19559803-19559822 | MS.gene32581:CDS | 50.0% | |
CAGCGGGGTTGTTCTAACAA+GGG | - | chr1.3:19560714-19560733 | MS.gene32581:CDS | 50.0% | |
CCCCCTTGGATGAAACTCAA+AGG | + | chr1.3:19560416-19560435 | None:intergenic | 50.0% | |
CGGAACCGTGTTACACAACA+AGG | - | chr1.3:19560595-19560614 | MS.gene32581:CDS | 50.0% | |
CTTCTGCTACGATGAGGAGT+CGG | - | chr1.3:19559705-19559724 | MS.gene32581:CDS | 50.0% | |
GCGATTCCCGGGATTTGTAT+TGG | - | chr1.3:19559764-19559783 | MS.gene32581:CDS | 50.0% | |
GCTGGGATCGATTATTTGCC+TGG | - | chr1.3:19559845-19559864 | MS.gene32581:CDS | 50.0% | |
GGGATGTTGTTCGAAGGACT+AGG | - | chr1.3:19559597-19559616 | MS.gene32581:CDS | 50.0% | |
GTAAATGTGTGGGCAGTTGC+AGG | - | chr1.3:19560449-19560468 | MS.gene32581:CDS | 50.0% | |
GTAACACGGTTCCGACAATG+AGG | + | chr1.3:19560589-19560608 | None:intergenic | 50.0% | |
TCCGAATAGGTGGACGGAAT+GGG | - | chr1.3:19560792-19560811 | MS.gene32581:CDS | 50.0% | |
TTCCGAATAGGTGGACGGAA+TGG | - | chr1.3:19560791-19560810 | MS.gene32581:CDS | 50.0% | |
TTCTGCTACGATGAGGAGTC+GGG | - | chr1.3:19559706-19559725 | MS.gene32581:CDS | 50.0% | |
! | CAAAGCGGGCTTCTCTTGAA+AGG | - | chr1.3:19560520-19560539 | MS.gene32581:CDS | 50.0% |
! | CTCTGGACGTGTCTAGAATG+AGG | - | chr1.3:19560884-19560903 | MS.gene32581:CDS | 50.0% |
! | GGATGGAGCGTGTTGGTATA+AGG | - | chr1.3:19560320-19560339 | MS.gene32581:CDS | 50.0% |
ACACGGTTCCGACAATGAGG+CGG | + | chr1.3:19560586-19560605 | None:intergenic | 55.0% | |
AGGATTGTTGGCGCGATTCC+CGG | - | chr1.3:19559752-19559771 | MS.gene32581:CDS | 55.0% | |
CAACCTGTCTCATTCCCCCT+TGG | + | chr1.3:19560430-19560449 | None:intergenic | 55.0% | |
CATCCAAGGGGGAATGAGAC+AGG | - | chr1.3:19560424-19560443 | MS.gene32581:CDS | 55.0% | |
CCCCATTCCGTCCACCTATT+CGG | + | chr1.3:19560796-19560815 | None:intergenic | 55.0% | |
CCGAATAGGTGGACGGAATG+GGG | - | chr1.3:19560793-19560812 | MS.gene32581:CDS | 55.0% | |
GTAGCTGTCCGCCTCATTGT+CGG | - | chr1.3:19560575-19560594 | MS.gene32581:CDS | 55.0% | |
GTGGGCAGGATAAGAATCGG+AGG | - | chr1.3:19559972-19559991 | MS.gene32581:CDS | 55.0% | |
TACCTTCGTACCTCACAGCG+CGG | + | chr1.3:19560078-19560097 | None:intergenic | 55.0% | |
TCTGCTACGATGAGGAGTCG+GGG | - | chr1.3:19559707-19559726 | MS.gene32581:CDS | 55.0% | |
TGAGGCGGACAGCTACAATC+AGG | + | chr1.3:19560571-19560590 | None:intergenic | 55.0% | |
TGGAAACTGGTTGGGGAGTG+AGG | - | chr1.3:19560650-19560669 | MS.gene32581:CDS | 55.0% | |
! | GAGGGGATCTTGCTATGGAG+AGG | - | chr1.3:19560020-19560039 | MS.gene32581:CDS | 55.0% |
ACCAACACGCTCCATCCCGT+TGG | + | chr1.3:19560317-19560336 | None:intergenic | 60.0% | |
ATCCGCGCTGTGAGGTACGA+AGG | - | chr1.3:19560073-19560092 | MS.gene32581:CDS | 60.0% | |
CGATGAGGAGTCGGGGATTG+TGG | - | chr1.3:19559714-19559733 | MS.gene32581:CDS | 60.0% | |
GGATTGTTGGCGCGATTCCC+GGG | - | chr1.3:19559753-19559772 | MS.gene32581:CDS | 60.0% | |
TAAGGGTCATCCGCGCTGTG+AGG | - | chr1.3:19560065-19560084 | MS.gene32581:CDS | 60.0% | |
TCCAACGGGATGGAGCGTGT+TGG | - | chr1.3:19560313-19560332 | MS.gene32581:CDS | 60.0% | |
TGTGTGGGCAGTTGCAGGGA+AGG | - | chr1.3:19560454-19560473 | MS.gene32581:CDS | 60.0% | |
!! | TCTCTCGGGTCATGGTGGGC+AGG | - | chr1.3:19559958-19559977 | MS.gene32581:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 19559536 | 19561101 | 19559536 | ID=MS.gene32581 |
chr1.3 | mRNA | 19559536 | 19561101 | 19559536 | ID=MS.gene32581.t1;Parent=MS.gene32581 |
chr1.3 | exon | 19559536 | 19561101 | 19559536 | ID=MS.gene32581.t1.exon1;Parent=MS.gene32581.t1 |
chr1.3 | CDS | 19559536 | 19561101 | 19559536 | ID=cds.MS.gene32581.t1;Parent=MS.gene32581.t1 |
Gene Sequence |
Protein sequence |