AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32582

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32582.t1 MTR_1g035420 77.281 581 88 9 1 544 82 655 0.0 872
MS.gene32582.t1 MTR_1g035420 77.778 72 12 2 109 178 58 127 2.36e-19 92.0
MS.gene32582.t1 MTR_1g035400 80.412 388 74 2 158 543 186 573 0.0 647
MS.gene32582.t1 MTR_8g070070 72.135 384 105 2 162 544 383 765 0.0 604
MS.gene32582.t1 MTR_8g070075 65.625 384 130 2 162 544 376 758 0.0 556
MS.gene32582.t1 MTR_8g071030 66.402 378 126 1 162 538 363 740 0.0 553
MS.gene32582.t1 MTR_6g044690 64.543 361 115 6 184 535 208 564 1.39e-158 464
MS.gene32582.t1 MTR_0376s0030 58.808 386 141 6 169 544 197 574 1.87e-151 446
MS.gene32582.t1 MTR_6g043960 57.618 361 119 7 184 535 147 482 1.20e-131 392
MS.gene32582.t1 MTR_2g054460 52.778 360 110 9 184 535 157 464 1.58e-111 340
MS.gene32582.t1 MTR_7g088370 39.529 382 211 11 158 535 315 680 1.24e-74 250
MS.gene32582.t1 MTR_3g011440 35.787 394 229 8 155 534 250 633 2.36e-73 246
MS.gene32582.t1 MTR_8g042750 36.792 424 247 12 125 536 245 659 5.01e-72 243
MS.gene32582.t1 MTR_5g013420 35.952 420 234 11 142 540 660 1065 1.79e-71 248
MS.gene32582.t1 MTR_5g013420 35.952 420 234 11 142 540 660 1065 1.88e-71 248
MS.gene32582.t1 MTR_4g010830 39.286 364 197 8 184 540 610 956 3.34e-71 246
MS.gene32582.t1 MTR_6g061270 37.879 396 222 11 162 540 282 670 4.68e-68 233
MS.gene32582.t1 MTR_7g084090 37.783 397 221 12 162 540 345 733 4.79e-66 228
MS.gene32582.t1 MTR_4g010550 34.434 424 204 14 142 540 66 440 6.35e-62 211
MS.gene32582.t1 MTR_6g061200 36.082 388 211 12 162 540 282 641 8.01e-60 210
MS.gene32582.t1 MTR_7g084090 41.026 273 145 9 162 424 345 611 3.60e-49 180
MS.gene32582.t1 MTR_7g052480 34.559 272 165 7 281 542 266 534 1.30e-40 155
MS.gene32582.t1 MTR_1g048950 32.692 364 204 8 184 533 171 507 1.60e-37 146
MS.gene32582.t1 MTR_7g445710 28.440 436 205 17 142 539 152 518 9.00e-35 138
MS.gene32582.t1 MTR_7g445530 28.605 430 200 17 142 533 152 512 2.74e-34 136
MS.gene32582.t1 MTR_6g044000 77.358 53 12 0 483 535 117 169 8.76e-22 92.8
MS.gene32582.t1 MTR_7g445600 32.000 150 65 1 384 533 243 355 1.37e-21 96.7
MS.gene32582.t1 MTR_1g080340 27.157 313 157 12 285 541 269 566 2.47e-19 92.0
MS.gene32582.t1 MTR_1g069570 25.161 310 162 10 285 539 430 724 4.08e-19 91.7
MS.gene32582.t1 MTR_8g078490 29.891 184 115 3 352 533 1058 1229 8.56e-19 90.9
MS.gene32582.t1 MTR_4g132610 28.804 184 117 3 352 533 852 1023 3.13e-18 89.0
MS.gene32582.t1 MTR_5g018850 32.086 187 107 5 352 534 1312 1482 6.22e-18 88.2
MS.gene32582.t1 MTR_8g078505 29.508 183 115 4 352 533 346 515 7.40e-18 87.0
MS.gene32582.t1 MTR_6g027690 27.064 218 132 6 329 544 215 407 1.19e-16 82.8
MS.gene32582.t1 MTR_7g098390 25.000 312 150 13 285 535 388 676 3.04e-16 82.4
MS.gene32582.t1 MTR_1g069570 25.573 262 126 9 285 492 430 676 8.95e-15 77.8
MS.gene32582.t1 MTR_1g064770 43.750 64 35 1 364 426 28 91 2.27e-12 63.5
MS.gene32582.t1 MTR_4g131630 53.846 52 21 1 480 531 1 49 4.21e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32582.t1 AT4G13460 61.399 386 143 4 155 538 260 641 6.20e-173 504
MS.gene32582.t1 AT4G13460 61.399 386 143 4 155 538 260 641 6.20e-173 504
MS.gene32582.t1 AT2G33290 59.021 388 155 3 158 544 263 647 2.65e-165 484
MS.gene32582.t1 AT2G33290 59.021 388 155 3 158 544 263 647 2.65e-165 484
MS.gene32582.t1 AT2G33290 59.021 388 155 3 158 544 263 647 2.65e-165 484
MS.gene32582.t1 AT2G33290 59.021 388 155 3 158 544 263 647 2.65e-165 484
MS.gene32582.t1 AT1G73100 38.182 385 216 11 162 536 268 640 7.71e-72 242
MS.gene32582.t1 AT5G04940 37.056 394 218 11 155 536 266 641 2.51e-71 241
MS.gene32582.t1 AT5G04940 37.056 394 218 11 155 536 266 641 2.51e-71 241
MS.gene32582.t1 AT2G22740 37.190 363 211 6 184 540 415 766 4.27e-67 232
MS.gene32582.t1 AT2G22740 37.190 363 211 6 184 540 415 766 4.27e-67 232
MS.gene32582.t1 AT2G35160 36.757 370 197 7 173 540 400 734 1.03e-66 230
MS.gene32582.t1 AT2G35160 36.757 370 197 7 173 540 436 770 2.24e-66 230
MS.gene32582.t1 AT2G35160 36.757 370 197 7 173 540 436 770 2.24e-66 230
MS.gene32582.t1 AT2G35160 36.757 370 197 7 173 540 436 770 2.24e-66 230
MS.gene32582.t1 AT2G35160 36.757 370 197 7 173 540 436 770 2.24e-66 230
MS.gene32582.t1 AT5G13960 35.000 400 231 12 162 542 79 468 1.02e-65 221
MS.gene32582.t1 AT5G13960 35.000 400 231 12 162 542 213 602 4.56e-65 223
MS.gene32582.t1 AT1G17770 36.870 377 215 11 172 536 297 662 2.75e-59 209
MS.gene32582.t1 AT2G24740 36.438 365 209 10 184 543 386 732 1.90e-51 188
MS.gene32582.t1 AT2G23740 32.632 190 104 6 352 534 1177 1349 1.78e-21 99.8
MS.gene32582.t1 AT2G23740 32.632 190 104 6 352 534 1184 1356 1.91e-21 99.4
MS.gene32582.t1 AT2G23740 32.632 190 104 6 352 534 1184 1356 1.91e-21 99.4
MS.gene32582.t1 AT2G23740 32.632 190 104 6 352 534 1184 1356 1.91e-21 99.4
MS.gene32582.t1 AT3G03750 29.808 208 120 6 328 534 141 323 1.52e-18 87.8
MS.gene32582.t1 AT3G04380 24.183 306 162 11 285 535 146 436 9.78e-18 86.7
MS.gene32582.t1 AT3G04380 24.183 306 162 11 285 535 146 436 1.03e-17 86.7
MS.gene32582.t1 AT3G04380 24.183 306 162 11 285 535 130 420 1.04e-17 86.3
MS.gene32582.t1 AT3G04380 24.183 306 162 11 285 535 119 409 1.12e-17 86.3
MS.gene32582.t1 AT3G04380 24.183 306 162 11 285 535 103 393 1.26e-17 85.9
MS.gene32582.t1 AT3G04380 24.183 306 162 11 285 535 119 409 1.34e-17 85.9
MS.gene32582.t1 AT2G05900 32.948 173 110 4 141 313 25 191 1.82e-16 80.9
MS.gene32582.t1 AT2G23740 33.108 148 75 6 352 492 1184 1314 7.71e-15 78.6
MS.gene32582.t1 AT2G23740 33.108 148 75 6 352 492 1184 1314 7.71e-15 78.6
MS.gene32582.t1 AT1G04050 25.076 331 160 11 273 535 387 697 8.87e-15 77.8
MS.gene32582.t1 AT1G04050 25.076 331 160 11 273 535 387 697 8.87e-15 77.8
MS.gene32582.t1 AT1G04050 25.076 331 160 11 273 535 283 593 1.24e-14 77.4
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 503 660 2.52e-13 73.2
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 503 660 2.52e-13 73.2
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 503 660 2.52e-13 73.2
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 503 660 2.52e-13 73.2
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 526 683 2.64e-13 73.2
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 526 683 2.64e-13 73.2
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 546 703 3.31e-13 72.8
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 546 703 3.31e-13 72.8
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 523 680 3.48e-13 72.8
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 523 680 3.48e-13 72.8
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 523 680 3.48e-13 72.8
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 523 680 3.48e-13 72.8
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 434 591 3.80e-13 72.8
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 454 611 4.85e-13 72.4
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 454 611 4.85e-13 72.4
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 454 611 4.85e-13 72.4
MS.gene32582.t1 AT5G43990 27.011 174 109 4 364 535 454 611 4.85e-13 72.4
MS.gene32582.t1 AT5G47150 46.835 79 39 1 177 255 249 324 7.05e-11 64.3

Find 144 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGTTCAGACTTAGATTT+AGG 0.191105 1.3:+19527847 None:intergenic
CGGAACCGTGTTACGCAAAA+AGG 0.220274 1.3:-19527009 MS.gene32582:CDS
CATCAACAGCATCAATGTTT+TGG 0.236400 1.3:+19527709 None:intergenic
CATCAACAGCATCAATGTTT+TGG 0.236400 1.3:+19529354 None:intergenic
TGGTGGTGGTTGGTTGTTCT+AGG 0.261325 1.3:+19527808 None:intergenic
CTTGCATCTGCATTTGCATC+TGG 0.286549 1.3:+19527681 None:intergenic
CTTGCATCTGCATTTGCATC+TGG 0.286549 1.3:+19529326 None:intergenic
GTCAAAATAAATACGCTAAA+TGG 0.288381 1.3:+19529204 None:intergenic
GGGAGACTGGTTGGGGAGTT+AGG 0.302694 1.3:-19526954 MS.gene32582:CDS
GTATCCATCAATTCCTCCTT+TGG 0.310358 1.3:-19526749 MS.gene32582:CDS
GGAAATCAGATAGCGGTATG+AGG 0.320270 1.3:+19527919 None:intergenic
AGAGAGTTCAGCCTTGATTA+TGG 0.322787 1.3:-19526571 MS.gene32582:CDS
GGTTGGAAGTGTTTAGATCT+AGG 0.329004 1.3:-19526975 MS.gene32582:CDS
GCAAGCCACATTCCTCATTC+TGG 0.346436 1.3:+19526708 None:intergenic
GATGTTGGTAAAAGTGGTTT+TGG 0.352738 1.3:-19527444 MS.gene32582:CDS
GTATGGAGCGTGTCGGTATA+AGG 0.360786 1.3:-19527284 MS.gene32582:CDS
GAAGGTACTTCTTCGACTTC+GGG 0.363101 1.3:-19527516 MS.gene32582:CDS
ATGGAGAGGAGTATGCATTA+TGG 0.365705 1.3:-19527573 MS.gene32582:CDS
TTTAAGTTATGGAGGATTGA+TGG 0.371705 1.3:-19527411 MS.gene32582:CDS
CACTTTGTGTTTCATGAAAG+TGG 0.374630 1.3:-19527192 MS.gene32582:CDS
GGCGGCGTCGACGCCGGCGC+CGG 0.374770 1.3:+19527785 None:intergenic
TAGATCTAGGGAGACTGGTT+GGG 0.375144 1.3:-19526962 MS.gene32582:CDS
TCGGAAAATCTCCGCCATTC+TGG 0.390186 1.3:+19527764 None:intergenic
TTCGAACAGGTGGACGGAAT+GGG 0.394764 1.3:-19526812 MS.gene32582:CDS
TGAAGGTACTTCTTCGACTT+CGG 0.398545 1.3:-19527517 MS.gene32582:CDS
CATTCTGGCGGCGTCGACGC+CGG 0.406416 1.3:+19527779 None:intergenic
CGGCGTCGACGCCGCCAGAA+TGG 0.408674 1.3:-19527778 MS.gene32582:CDS
GGTAAGGTTTATGTTTATGA+TGG 0.408695 1.3:-19527495 MS.gene32582:CDS
TAAATGCACCAGCTTGAATA+AGG 0.411317 1.3:+19526923 None:intergenic
TGGAGAGGAGTATGCATTAT+GGG 0.415278 1.3:-19527572 MS.gene32582:CDS
GTCGACGCCGGCGCCGGTGG+TGG 0.415602 1.3:+19527791 None:intergenic
GTAGTTGTCCGCCTCATTGT+CGG 0.419366 1.3:-19527029 MS.gene32582:CDS
ACAAACTGAACCATCACATT+AGG 0.419575 1.3:+19526664 None:intergenic
ATGTTTATGATGGATTGTAT+AGG 0.423249 1.3:-19527485 MS.gene32582:CDS
CATTTATATGCGAGTACACT+GGG 0.423254 1.3:-19526906 MS.gene32582:CDS
TGTATAGGATTATTGAATGC+TGG 0.423863 1.3:-19527470 MS.gene32582:CDS
AAATCCAAAGGAGGAATTGA+TGG 0.424705 1.3:+19526745 None:intergenic
ATGAATGTACGGAAACATAA+AGG 0.428329 1.3:-19529236 MS.gene32582:CDS
TCCGGTTTCTGCTGGTGGAC+AGG 0.434771 1.3:-19527649 MS.gene32582:CDS
AGAAGCCCGCTTTGACTGTA+AGG 0.435492 1.3:+19527093 None:intergenic
GACGCCGGCGCCGGTGGTGG+TGG 0.437295 1.3:+19527794 None:intergenic
TGCATTATGGGATTGAGGTA+AGG 0.440994 1.3:-19527560 MS.gene32582:CDS
GCTATTGTTCCGGTTTCTGC+TGG 0.446134 1.3:-19527657 MS.gene32582:CDS
TCTTGATATTTCAAAGGGTA+TGG 0.448453 1.3:-19527301 MS.gene32582:CDS
CTCTTGATGTGTCCAGAATG+AGG 0.451204 1.3:-19526720 MS.gene32582:CDS
GATTGATGGTCAAGCTAAGA+TGG 0.453129 1.3:-19527397 MS.gene32582:CDS
GTTGGAAGTGTTTAGATCTA+GGG 0.456470 1.3:-19526974 MS.gene32582:CDS
GTGTTTAGATCTAGGGAGAC+TGG 0.456502 1.3:-19526967 MS.gene32582:CDS
TCCTGTCCACCAGCAGAAAC+CGG 0.458388 1.3:+19527648 None:intergenic
ATCAGATAGCGGTATGAGGG+GGG 0.461826 1.3:+19527923 None:intergenic
GAACAACCAACCACCACCAC+CGG 0.462238 1.3:-19527804 MS.gene32582:CDS
GCTATTGTTCCGGTTTCTGC+TGG 0.463618 1.3:-19529302 MS.gene32582:CDS
AATCAGATAGCGGTATGAGG+GGG 0.471338 1.3:+19527922 None:intergenic
GGCGTCGACGCCGGCGCCGG+TGG 0.471937 1.3:+19527788 None:intergenic
AGATCTAGGGAGACTGGTTG+GGG 0.471997 1.3:-19526961 MS.gene32582:CDS
ATATCTCTTGATATTTCAAA+GGG 0.472635 1.3:-19527306 MS.gene32582:CDS
TACTTCTTCGACTTCGGGTA+AGG 0.474074 1.3:-19527511 MS.gene32582:CDS
TGGTTTGATGTTGGTAAAAG+TGG 0.475144 1.3:-19527450 MS.gene32582:CDS
ATTGTTCCGGTTTCTGCTGG+TGG 0.475175 1.3:-19527654 MS.gene32582:CDS
GGCCTTGAGAAACAAAATCT+AGG 0.488155 1.3:+19527829 None:intergenic
CCGGCGCCGGTGGTGGTGGT+TGG 0.488719 1.3:+19527798 None:intergenic
TATATCTCTTGATATTTCAA+AGG 0.488782 1.3:-19527307 MS.gene32582:CDS
CATGAAAGTGGGAATGCGAC+AGG 0.494424 1.3:-19527180 MS.gene32582:CDS
CAAAAGCCAAAGAAACATAC+GGG 0.496386 1.3:+19527895 None:intergenic
TTTCGAACAGGTGGACGGAA+TGG 0.498413 1.3:-19526813 MS.gene32582:CDS
GCATTTATATGCGAGTACAC+TGG 0.498857 1.3:-19526907 MS.gene32582:CDS
AAATCAGATAGCGGTATGAG+GGG 0.500947 1.3:+19527921 None:intergenic
AATTTATCTCTGATTCAAGA+TGG 0.504650 1.3:-19526787 MS.gene32582:CDS
GAAATCAGATAGCGGTATGA+GGG 0.507588 1.3:+19527920 None:intergenic
TGCCCCTCCTCCTGCTGGTG+AGG 0.508629 1.3:-19529261 MS.gene32582:CDS
AAAAGGGCTTAAACATAGGT+TGG 0.511958 1.3:-19526992 MS.gene32582:CDS
AATAATGCCCCTCCTCCTGC+TGG 0.512692 1.3:-19529266 MS.gene32582:CDS
GCATTATGGGATTGAGGTAA+GGG 0.515857 1.3:-19527559 MS.gene32582:CDS
TCACATTATGCTGTTTGCGA+TGG 0.516973 1.3:-19526611 MS.gene32582:CDS
ATTCGCGGTGTGAGGTATGA+AGG 0.522477 1.3:-19527534 MS.gene32582:CDS
TTATTCTCACCAGCAGAAAC+CGG 0.525158 1.3:+19529293 None:intergenic
ACAAAAGCCAAAGAAACATA+CGG 0.525619 1.3:+19527894 None:intergenic
TCAGATAGCGGTATGAGGGG+GGG 0.532849 1.3:+19527924 None:intergenic
GAGTATGCATTATGGGATTG+AGG 0.534486 1.3:-19527565 MS.gene32582:CDS
ACTTTGTGTTTCATGAAAGT+GGG 0.535570 1.3:-19527191 MS.gene32582:CDS
CAAAGCGGGCTTCTCTTGAA+AGG 0.538573 1.3:-19527084 MS.gene32582:CDS
ATTGAATGCTGGTTTGATGT+TGG 0.540002 1.3:-19527459 MS.gene32582:CDS
TCAAGGCTGAACTCTCTCAA+TGG 0.540411 1.3:+19526577 None:intergenic
TTAGATCTAGGGAGACTGGT+TGG 0.541898 1.3:-19526963 MS.gene32582:CDS
CCAACCACCACCACCGGCGC+CGG 0.541973 1.3:-19527798 MS.gene32582:CDS
TCATTGGACCTTATTCAAGC+TGG 0.545200 1.3:-19526931 MS.gene32582:CDS
ACTTTCCTTACAGTCAAAGC+GGG 0.545405 1.3:-19527098 MS.gene32582:CDS
TTCATCAGAAGCTGGAAGGT+GGG 0.546457 1.3:-19527605 MS.gene32582:CDS
TTCCGACGCTCATTCACTGA+AGG 0.548549 1.3:-19527747 MS.gene32582:CDS
TTCCGACGCTCATTCACTGA+AGG 0.548549 1.3:-19529392 MS.gene32582:CDS
TGGTTGGGGAGTTAGGTCAT+TGG 0.553990 1.3:-19526947 MS.gene32582:CDS
TATTAATGAATCACCACTCA+TGG 0.554494 1.3:+19526849 None:intergenic
GCTTCTCTTGAAAGGAAAGC+CGG 0.556611 1.3:-19527076 MS.gene32582:CDS
AACCTCACCAGCAGGAGGAG+GGG 0.558398 1.3:+19529259 None:intergenic
ATTGATGGTCAAGCTAAGAT+GGG 0.559091 1.3:-19527396 MS.gene32582:CDS
TTTCATCAGAAGCTGGAAGG+TGG 0.563122 1.3:-19527606 MS.gene32582:CDS
ATAACCTCACCAGCAGGAGG+AGG 0.563671 1.3:+19529257 None:intergenic
TCGAACAGGTGGACGGAATG+GGG 0.569248 1.3:-19526811 MS.gene32582:CDS
GTGGACAGGATAAGAATTCG+AGG 0.571781 1.3:-19527635 MS.gene32582:CDS
ACAGGATAAGAATTCGAGGC+AGG 0.572812 1.3:-19527631 MS.gene32582:CDS
AGATGCAAGAGCTATTGTTC+CGG 0.573112 1.3:-19527667 MS.gene32582:CDS
AGATGCAAGAGCTATTGTTC+CGG 0.573112 1.3:-19529312 MS.gene32582:CDS
CATCAGCTACACCATAATCA+AGG 0.573838 1.3:+19526560 None:intergenic
GGCTGAACTCTCTCAATGGA+GGG 0.575518 1.3:+19526581 None:intergenic
GGAAGGTGGGAATCTTGCTA+TGG 0.576684 1.3:-19527592 MS.gene32582:CDS
TGCGACAGGTTGTCAATGTG+AGG 0.581743 1.3:-19527166 MS.gene32582:CDS
ACATTCATAACCTCACCAGC+AGG 0.581786 1.3:+19529251 None:intergenic
TAGCTCAACTCCTAATGTGA+TGG 0.586959 1.3:-19526674 MS.gene32582:CDS
GAAAATCTCCGCCATTCTGG+CGG 0.591102 1.3:+19527767 None:intergenic
TAACCTCACCAGCAGGAGGA+GGG 0.592169 1.3:+19529258 None:intergenic
CTTTCATGAAACACAAAGTG+TGG 0.594064 1.3:+19527195 None:intergenic
CGTCGACGCCGCCAGAATGG+CGG 0.594115 1.3:-19527775 MS.gene32582:CDS
AGGCTGAACTCTCTCAATGG+AGG 0.596120 1.3:+19526580 None:intergenic
AAGTGTGGAAAAGTAGCCCT+AGG 0.596819 1.3:+19527210 None:intergenic
ATTGAGGTAAGGGTTATTCG+CGG 0.599919 1.3:-19527549 MS.gene32582:CDS
TCAAGAGATATAACACACAT+AGG 0.602330 1.3:+19527318 None:intergenic
GGAGGAATTGATGGATACGA+AGG 0.604652 1.3:+19526754 None:intergenic
CTGGTGAGGTTATGAATGTA+CGG 0.606823 1.3:-19529247 MS.gene32582:CDS
AAATAAATACGCTAAATGGA+AGG 0.612095 1.3:+19529208 None:intergenic
ATCCTTCAGTGAATGAGCGT+CGG 0.615611 1.3:+19527745 None:intergenic
ATCCTTCAGTGAATGAGCGT+CGG 0.615611 1.3:+19529390 None:intergenic
TCAGAAATTATGACCATGAG+TGG 0.618462 1.3:-19526862 MS.gene32582:CDS
TAAGGGTTATTCGCGGTGTG+AGG 0.624788 1.3:-19527542 MS.gene32582:CDS
ACACTGGGGTTGTTCTGACA+AGG 0.627478 1.3:-19526891 MS.gene32582:CDS
GTGGGAATCTTGCTATGGAG+AGG 0.630151 1.3:-19527587 MS.gene32582:CDS
GGAATTGATGGATACGAAGG+AGG 0.638458 1.3:+19526757 None:intergenic
GCGACAGGTTGTCAATGTGA+GGG 0.638640 1.3:-19527165 MS.gene32582:CDS
GACTTTCCTTACAGTCAAAG+CGG 0.639876 1.3:-19527099 MS.gene32582:CDS
ATCGCAAACAGCATAATGTG+AGG 0.644756 1.3:+19526613 None:intergenic
GTAGCTGATGATGAGTTGAC+TGG 0.647668 1.3:-19526547 MS.gene32582:CDS
CACATAGGTTTATAACACAA+AGG 0.649300 1.3:+19527333 None:intergenic
TCGCAAACAGCATAATGTGA+GGG 0.654166 1.3:+19526614 None:intergenic
TTCATAACCTCACCAGCAGG+AGG 0.665106 1.3:+19529254 None:intergenic
TGAGGCGGACAACTACAAGA+AGG 0.667023 1.3:+19527036 None:intergenic
CACTGGGGTTGTTCTGACAA+GGG 0.671410 1.3:-19526890 MS.gene32582:CDS
ACACGGTTCCGACAATGAGG+CGG 0.681770 1.3:+19527021 None:intergenic
TCAAAGGGTATGGAGCGTGT+CGG 0.683293 1.3:-19527291 MS.gene32582:CDS
GGAAGATACTCAAAACACAT+CGG 0.687151 1.3:+19527231 None:intergenic
AAAAGCCAAAGAAACATACG+GGG 0.698344 1.3:+19527896 None:intergenic
AAGCCAAAGAAACATACGGG+GGG 0.714338 1.3:+19527898 None:intergenic
GTAACACGGTTCCGACAATG+AGG 0.724410 1.3:+19527018 None:intergenic
AAAGCCAAAGAAACATACGG+GGG 0.731649 1.3:+19527897 None:intergenic
TGTGTCCAGAATGAGGAATG+TGG 0.743322 1.3:-19526713 MS.gene32582:CDS
ATTTATATGCGAGTACACTG+GGG 0.744900 1.3:-19526905 MS.gene32582:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAAACGTTTAA+AGG + chr1.3:19527380-19527399 None:intergenic 10.0%
!!! ACATTCCATTTATTTTAAAT+TGG - chr1.3:19527205-19527224 MS.gene32582:CDS 15.0%
!!! TAGAACCAATTTAAAATAAA+TGG + chr1.3:19527213-19527232 None:intergenic 15.0%
!!! TGTTTTTGTTTCATAAAAAA+TGG - chr1.3:19528818-19528837 MS.gene32582:intron 15.0%
!! ATATCTCTTGATATTTCAAA+GGG - chr1.3:19528638-19528657 MS.gene32582:intron 20.0%
!! ATTATGAAAATATCCTTTGA+AGG + chr1.3:19527500-19527519 None:intergenic 20.0%
!! CTAATATAATAAACCTTCAA+AGG - chr1.3:19527484-19527503 MS.gene32582:CDS 20.0%
!! TATATCTCTTGATATTTCAA+AGG - chr1.3:19528637-19528656 MS.gene32582:intron 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG - chr1.3:19528522-19528541 MS.gene32582:intron 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG - chr1.3:19528525-19528544 MS.gene32582:intron 20.0%
! AAATAAATACGCTAAATGGA+AGG + chr1.3:19526739-19526758 None:intergenic 25.0%
! AACTTGAACATGAACAAAAA+CGG + chr1.3:19527873-19527892 None:intergenic 25.0%
! AATGTTCGAAACAAAAGAAA+CGG + chr1.3:19527160-19527179 None:intergenic 25.0%
! AATTTATCTCTGATTCAAGA+TGG - chr1.3:19529157-19529176 MS.gene32582:intron 25.0%
! AGAAAATATCAAAACAGGTA+GGG + chr1.3:19527923-19527942 None:intergenic 25.0%
! AGATGAGAAAATATCAAAAC+AGG + chr1.3:19527928-19527947 None:intergenic 25.0%
! AGGATAATATCAAAACAAAG+GGG + chr1.3:19527966-19527985 None:intergenic 25.0%
! GAGGATAATATCAAAACAAA+GGG + chr1.3:19527967-19527986 None:intergenic 25.0%
! GTCAAAATAAATACGCTAAA+TGG + chr1.3:19526743-19526762 None:intergenic 25.0%
! TTATAGTGTAACTTTCTCTT+TGG + chr1.3:19527781-19527800 None:intergenic 25.0%
! TTATCAACTTCTATGTATTC+TGG - chr1.3:19526980-19526999 MS.gene32582:CDS 25.0%
! TTCATGTGCAAAAACAAATA+AGG + chr1.3:19527672-19527691 None:intergenic 25.0%
! TTGCAAACTGATTATTATCA+TGG - chr1.3:19527106-19527125 MS.gene32582:CDS 25.0%
!! ATTTAACTTTCCATCATTTG+AGG + chr1.3:19527027-19527046 None:intergenic 25.0%
!! GAAAGTACAATAAAATCACA+TGG + chr1.3:19526775-19526794 None:intergenic 25.0%
!!! ATGTTTATGATGGATTGTAT+AGG - chr1.3:19528459-19528478 MS.gene32582:intron 25.0%
AATATTCAGATATAAGCCAG+TGG - chr1.3:19527601-19527620 MS.gene32582:CDS 30.0%
ACAAAAGCCAAAGAAACATA+CGG + chr1.3:19528053-19528072 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG + chr1.3:19529214-19529233 None:intergenic 30.0%
ACTTTGTGTTTCATGAAAGT+GGG - chr1.3:19528753-19528772 MS.gene32582:intron 30.0%
AGTTTGGTATGATTCTATGA+GGG - chr1.3:19527574-19527593 MS.gene32582:CDS 30.0%
ATATGTCTGTAGCTCATATA+TGG + chr1.3:19526957-19526976 None:intergenic 30.0%
ATGAATGTACGGAAACATAA+AGG - chr1.3:19526708-19526727 MS.gene32582:CDS 30.0%
ATTAACCTAATAGCCAAACT+AGG + chr1.3:19527819-19527838 None:intergenic 30.0%
CAAAACAAAGGGGAAAATAA+TGG + chr1.3:19527956-19527975 None:intergenic 30.0%
CACATAGGTTTATAACACAA+AGG + chr1.3:19528614-19528633 None:intergenic 30.0%
CTGGCTTATATCTGAATATT+TGG + chr1.3:19527601-19527620 None:intergenic 30.0%
GAAAATATCAAAACAGGTAG+GGG + chr1.3:19527922-19527941 None:intergenic 30.0%
GAGAAAATATCAAAACAGGT+AGG + chr1.3:19527924-19527943 None:intergenic 30.0%
GGAGGATAATATCAAAACAA+AGG + chr1.3:19527968-19527987 None:intergenic 30.0%
GGTAAGGTTTATGTTTATGA+TGG - chr1.3:19528449-19528468 MS.gene32582:intron 30.0%
GTCTCAAAAATGCAAATACT+TGG + chr1.3:19527650-19527669 None:intergenic 30.0%
TATTAATGAATCACCACTCA+TGG + chr1.3:19529098-19529117 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG + chr1.3:19528629-19528648 None:intergenic 30.0%
TCTATAATCATATATGCCAG+TGG - chr1.3:19527548-19527567 MS.gene32582:CDS 30.0%
TCTTGATATTTCAAAGGGTA+TGG - chr1.3:19528643-19528662 MS.gene32582:intron 30.0%
TGTAAAAAATACGAGCAAAC+AGG + chr1.3:19527188-19527207 None:intergenic 30.0%
TGTATAGGATTATTGAATGC+TGG - chr1.3:19528474-19528493 MS.gene32582:intron 30.0%
TTTGGCTATTAGGTTAATAG+CGG - chr1.3:19527821-19527840 MS.gene32582:CDS 30.0%
! AATCCGTTCAATTGTTTTCA+CGG - chr1.3:19526818-19526837 MS.gene32582:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG - chr1.3:19528533-19528552 MS.gene32582:intron 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG - chr1.3:19528113-19528132 MS.gene32582:intron 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG - chr1.3:19528565-19528584 MS.gene32582:intron 30.0%
!!! TAAAGGAGGCTTTTTTACTT+AGG - chr1.3:19528582-19528601 MS.gene32582:intron 30.0%
!!! TATGTTTCTTTGGCTTTTGT+TGG - chr1.3:19528053-19528072 MS.gene32582:intron 30.0%
AAAAGCCAAAGAAACATACG+GGG + chr1.3:19528051-19528070 None:intergenic 35.0%
AAAAGGGCTTAAACATAGGT+TGG - chr1.3:19528952-19528971 MS.gene32582:intron 35.0%
AAATCCAAAGGAGGAATTGA+TGG + chr1.3:19529202-19529221 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG + chr1.3:19529283-19529302 None:intergenic 35.0%
ACATCGTAATGTAACGCATA+TGG - chr1.3:19527317-19527336 MS.gene32582:CDS 35.0%
ATGCAAAACATATAGACCAC+AGG - chr1.3:19527704-19527723 MS.gene32582:CDS 35.0%
ATTTATATGCGAGTACACTG+GGG - chr1.3:19529039-19529058 MS.gene32582:intron 35.0%
CAAAAGCCAAAGAAACATAC+GGG + chr1.3:19528052-19528071 None:intergenic 35.0%
CACTTTGTGTTTCATGAAAG+TGG - chr1.3:19528752-19528771 MS.gene32582:intron 35.0%
CATTTATATGCGAGTACACT+GGG - chr1.3:19529038-19529057 MS.gene32582:intron 35.0%
CGTTTAAAGGAAAGAACAAG+TGG + chr1.3:19527367-19527386 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG + chr1.3:19528100-19528119 None:intergenic 35.0%
CTTTCATGAAACACAAAGTG+TGG + chr1.3:19528752-19528771 None:intergenic 35.0%
GAGTTTGGTATGATTCTATG+AGG - chr1.3:19527573-19527592 MS.gene32582:CDS 35.0%
GGAAGATACTCAAAACACAT+CGG + chr1.3:19528716-19528735 None:intergenic 35.0%
GTTTGGTATGATTCTATGAG+GGG - chr1.3:19527575-19527594 MS.gene32582:CDS 35.0%
TAAAATCACATGGAAGACAG+TGG + chr1.3:19526765-19526784 None:intergenic 35.0%
TAAATGCACCAGCTTGAATA+AGG + chr1.3:19529024-19529043 None:intergenic 35.0%
TAGATTCGACAAAGCTCAAA+AGG + chr1.3:19526797-19526816 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG + chr1.3:19529211-19529230 None:intergenic 35.0%
TCAGAAATTATGACCATGAG+TGG - chr1.3:19529082-19529101 MS.gene32582:intron 35.0%
TGCAAAACATATAGACCACA+GGG - chr1.3:19527705-19527724 MS.gene32582:CDS 35.0%
! AATTGTTTTCACGGAGGTAA+AGG - chr1.3:19526827-19526846 MS.gene32582:CDS 35.0%
! ATGTAACGCATATGGCATTT+TGG - chr1.3:19527325-19527344 MS.gene32582:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG - chr1.3:19528548-19528567 MS.gene32582:intron 35.0%
! CATCAACAGCATCAATGTTT+TGG + chr1.3:19526593-19526612 None:intergenic 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG - chr1.3:19528494-19528513 MS.gene32582:intron 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG - chr1.3:19528485-19528504 MS.gene32582:intron 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG - chr1.3:19528500-19528519 MS.gene32582:intron 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG - chr1.3:19528568-19528587 MS.gene32582:intron 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG - chr1.3:19528718-19528737 MS.gene32582:intron 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG - chr1.3:19528970-19528989 MS.gene32582:intron 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG - chr1.3:19528717-19528736 MS.gene32582:intron 35.0%
AAAGCCAAAGAAACATACGG+GGG + chr1.3:19528050-19528069 None:intergenic 40.0%
AACATGAACAAAAACGGAGC+AGG + chr1.3:19527867-19527886 None:intergenic 40.0%
ACAGCAATGCTATCCTAGTT+TGG - chr1.3:19527803-19527822 MS.gene32582:CDS 40.0%
ACTTTCCTTACAGTCAAAGC+GGG - chr1.3:19528846-19528865 MS.gene32582:intron 40.0%
AGAGAGTTCAGCCTTGATTA+TGG - chr1.3:19529373-19529392 MS.gene32582:CDS 40.0%
AGATGCAAGAGCTATTGTTC+CGG - chr1.3:19526632-19526651 MS.gene32582:CDS 40.0%
ATCATATGAAACTCTGCCAC+TGG + chr1.3:19527620-19527639 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG + chr1.3:19529334-19529353 None:intergenic 40.0%
ATTGAGGTAAGGGTTATTCG+CGG - chr1.3:19528395-19528414 MS.gene32582:intron 40.0%
CACCTGTTCGAAAAACGATT+CGG + chr1.3:19529124-19529143 None:intergenic 40.0%
CATCAGCTACACCATAATCA+AGG + chr1.3:19529387-19529406 None:intergenic 40.0%
CCTCCGTGAAAACAATTGAA+CGG + chr1.3:19526824-19526843 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG - chr1.3:19528948-19528967 MS.gene32582:intron 40.0%
CTGGTGAGGTTATGAATGTA+CGG - chr1.3:19526697-19526716 MS.gene32582:CDS 40.0%
GACTTTCCTTACAGTCAAAG+CGG - chr1.3:19528845-19528864 MS.gene32582:intron 40.0%
GAGTATGCATTATGGGATTG+AGG - chr1.3:19528379-19528398 MS.gene32582:intron 40.0%
GAGTTTACGTAAGCTCTTGA+TGG - chr1.3:19527425-19527444 MS.gene32582:CDS 40.0%
GCAAAACATATAGACCACAG+GGG - chr1.3:19527706-19527725 MS.gene32582:CDS 40.0%
GCATTATGGGATTGAGGTAA+GGG - chr1.3:19528385-19528404 MS.gene32582:intron 40.0%
GCATTTATATGCGAGTACAC+TGG - chr1.3:19529037-19529056 MS.gene32582:intron 40.0%
GCTATCCTAGTTTGGCTATT+AGG - chr1.3:19527811-19527830 MS.gene32582:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG + chr1.3:19528890-19528909 None:intergenic 40.0%
GGCCTTGAGAAACAAAATCT+AGG + chr1.3:19528118-19528137 None:intergenic 40.0%
GTATCCATCAATTCCTCCTT+TGG - chr1.3:19529195-19529214 MS.gene32582:intron 40.0%
TAGCTCAACTCCTAATGTGA+TGG - chr1.3:19529270-19529289 MS.gene32582:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG - chr1.3:19529013-19529032 MS.gene32582:intron 40.0%
TCGCAAACAGCATAATGTGA+GGG + chr1.3:19529333-19529352 None:intergenic 40.0%
TGCATTATGGGATTGAGGTA+AGG - chr1.3:19528384-19528403 MS.gene32582:intron 40.0%
TTATTCTCACCAGCAGAAAC+CGG + chr1.3:19526654-19526673 None:intergenic 40.0%
TTGCTTGGTAAAGTGTGCAT+GGG + chr1.3:19527738-19527757 None:intergenic 40.0%
! AAATCAGATAGCGGTATGAG+GGG + chr1.3:19528026-19528045 None:intergenic 40.0%
! ATGGAGAGGAGTATGCATTA+TGG - chr1.3:19528371-19528390 MS.gene32582:intron 40.0%
! CCATCATTTGAGGTACATCA+GGG + chr1.3:19527017-19527036 None:intergenic 40.0%
! GAAATCAGATAGCGGTATGA+GGG + chr1.3:19528027-19528046 None:intergenic 40.0%
! GATTGATGGTCAAGCTAAGA+TGG - chr1.3:19528547-19528566 MS.gene32582:intron 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG - chr1.3:19528335-19528354 MS.gene32582:intron 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG + chr1.3:19528943-19528962 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG - chr1.3:19529333-19529352 MS.gene32582:CDS 40.0%
! TCCATCATTTGAGGTACATC+AGG + chr1.3:19527018-19527037 None:intergenic 40.0%
! TGGAGAGGAGTATGCATTAT+GGG - chr1.3:19528372-19528391 MS.gene32582:intron 40.0%
!! ATCCGAATCGTTTTTCGAAC+AGG - chr1.3:19529119-19529138 MS.gene32582:intron 40.0%
!! CAAAAAGAGCGTCTCACAAA+AGG + chr1.3:19527270-19527289 None:intergenic 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG - chr1.3:19528969-19528988 MS.gene32582:intron 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG - chr1.3:19528427-19528446 MS.gene32582:intron 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG - chr1.3:19528884-19528903 MS.gene32582:intron 40.0%
AAAACAGGTAGGGGTTTGAG+GGG + chr1.3:19527913-19527932 None:intergenic 45.0%
AAGCCAAAGAAACATACGGG+GGG + chr1.3:19528049-19528068 None:intergenic 45.0%
AAGTGTGGAAAAGTAGCCCT+AGG + chr1.3:19528737-19528756 None:intergenic 45.0%
ACAGGATAAGAATTCGAGGC+AGG - chr1.3:19528313-19528332 MS.gene32582:intron 45.0%
ACATTCATAACCTCACCAGC+AGG + chr1.3:19526696-19526715 None:intergenic 45.0%
ATCATACCAAACTCTGCCAC+TGG + chr1.3:19527567-19527586 None:intergenic 45.0%
ATCCTTCAGTGAATGAGCGT+CGG + chr1.3:19526557-19526576 None:intergenic 45.0%
CAAAACAGGTAGGGGTTTGA+GGG + chr1.3:19527914-19527933 None:intergenic 45.0%
CCCTGATGTACCTCAAATGA+TGG - chr1.3:19527014-19527033 MS.gene32582:CDS 45.0%
CTCTTGATGTGTCCAGAATG+AGG - chr1.3:19529224-19529243 MS.gene32582:CDS 45.0%
CTTGCATCTGCATTTGCATC+TGG + chr1.3:19526621-19526640 None:intergenic 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG - chr1.3:19528868-19528887 MS.gene32582:intron 45.0%
GGAACCGTGTTACGCAAAAA+GGG - chr1.3:19528936-19528955 MS.gene32582:intron 45.0%
GTGGACAGGATAAGAATTCG+AGG - chr1.3:19528309-19528328 MS.gene32582:intron 45.0%
GTGTTTAGATCTAGGGAGAC+TGG - chr1.3:19528977-19528996 MS.gene32582:intron 45.0%
GTTGCTTGGTAAAGTGTGCA+TGG + chr1.3:19527739-19527758 None:intergenic 45.0%
TAACTTTCTCTTTGGCCCAG+TGG + chr1.3:19527773-19527792 None:intergenic 45.0%
TACTTCTTCGACTTCGGGTA+AGG - chr1.3:19528433-19528452 MS.gene32582:intron 45.0%
TATATGCCAGTGGCAGAGTT+TGG - chr1.3:19527558-19527577 MS.gene32582:CDS 45.0%
TCAAAACAGGTAGGGGTTTG+AGG + chr1.3:19527915-19527934 None:intergenic 45.0%
TCAAGGCTGAACTCTCTCAA+TGG + chr1.3:19529370-19529389 None:intergenic 45.0%
TGTGTCCAGAATGAGGAATG+TGG - chr1.3:19529231-19529250 MS.gene32582:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG - chr1.3:19528981-19529000 MS.gene32582:intron 45.0%
TTCATCAGAAGCTGGAAGGT+GGG - chr1.3:19528339-19528358 MS.gene32582:intron 45.0%
TTTCATCAGAAGCTGGAAGG+TGG - chr1.3:19528338-19528357 MS.gene32582:intron 45.0%
TTTCCCCCCGTATGTTTCTT+TGG - chr1.3:19528043-19528062 MS.gene32582:intron 45.0%
! AATCAGATAGCGGTATGAGG+GGG + chr1.3:19528025-19528044 None:intergenic 45.0%
! CCGTTCAATTGTTTTCACGG+AGG - chr1.3:19526821-19526840 MS.gene32582:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG - chr1.3:19528331-19528350 MS.gene32582:intron 45.0%
! GGAAATCAGATAGCGGTATG+AGG + chr1.3:19528028-19528047 None:intergenic 45.0%
! GGAATTGATGGATACGAAGG+AGG + chr1.3:19529190-19529209 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG + chr1.3:19529193-19529212 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG - chr1.3:19529397-19529416 MS.gene32582:CDS 45.0%
! GTCAATGTGAGGGCTTTTGT+GGG - chr1.3:19528789-19528808 MS.gene32582:intron 45.0%
! TAGATCTAGGGAGACTGGTT+GGG - chr1.3:19528982-19529001 MS.gene32582:intron 45.0%
! TCAATGTGAGGGCTTTTGTG+GGG - chr1.3:19528790-19528809 MS.gene32582:intron 45.0%
! TGTCAATGTGAGGGCTTTTG+TGG - chr1.3:19528788-19528807 MS.gene32582:intron 45.0%
! TTGAGGTACATCAGGGTGTT+AGG + chr1.3:19527010-19527029 None:intergenic 45.0%
!! AAGAGCGTCTCACAAAAGGA+AGG + chr1.3:19527266-19527285 None:intergenic 45.0%
!! CGAATCGTTTTTCGAACAGG+TGG - chr1.3:19529122-19529141 MS.gene32582:intron 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG - chr1.3:19528428-19528447 MS.gene32582:intron 45.0%
!! TCGTTTTTCGAACAGGTGGA+CGG - chr1.3:19529126-19529145 MS.gene32582:intron 45.0%
AAACAGGTAGGGGTTTGAGG+GGG + chr1.3:19527912-19527931 None:intergenic 50.0%
AAACGGAGCAGGCAAGGAAA+CGG + chr1.3:19527856-19527875 None:intergenic 50.0%
ACACTGGGGTTGTTCTGACA+AGG - chr1.3:19529053-19529072 MS.gene32582:intron 50.0%
AGAAGCCCGCTTTGACTGTA+AGG + chr1.3:19528854-19528873 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG + chr1.3:19529367-19529386 None:intergenic 50.0%
AGGGGTCTGAGAGGAAAAGT+AGG + chr1.3:19527990-19528009 None:intergenic 50.0%
ATTCGCGGTGTGAGGTATGA+AGG - chr1.3:19528410-19528429 MS.gene32582:intron 50.0%
ATTGTTCCGGTTTCTGCTGG+TGG - chr1.3:19526645-19526664 MS.gene32582:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG - chr1.3:19529054-19529073 MS.gene32582:intron 50.0%
CATGAAAGTGGGAATGCGAC+AGG - chr1.3:19528764-19528783 MS.gene32582:intron 50.0%
CGGAACCGTGTTACGCAAAA+AGG - chr1.3:19528935-19528954 MS.gene32582:intron 50.0%
CTTTGGCCCAGTGGAAAAGT+GGG + chr1.3:19527764-19527783 None:intergenic 50.0%
GAAAATCTCCGCCATTCTGG+CGG + chr1.3:19528180-19528199 None:intergenic 50.0%
GAACAAAAACGGAGCAGGCA+AGG + chr1.3:19527862-19527881 None:intergenic 50.0%
GAGTCTACGAGTCAAGCCTA+CGG + chr1.3:19527452-19527471 None:intergenic 50.0%
GCAAGCCACATTCCTCATTC+TGG + chr1.3:19529239-19529258 None:intergenic 50.0%
GCGACAGGTTGTCAATGTGA+GGG - chr1.3:19528779-19528798 MS.gene32582:intron 50.0%
GCTATTGTTCCGGTTTCTGC+TGG - chr1.3:19526642-19526661 MS.gene32582:CDS 50.0%
GGAAGGTGGGAATCTTGCTA+TGG - chr1.3:19528352-19528371 MS.gene32582:intron 50.0%
GGCTGAACTCTCTCAATGGA+GGG + chr1.3:19529366-19529385 None:intergenic 50.0%
GGGGTCTGAGAGGAAAAGTA+GGG + chr1.3:19527989-19528008 None:intergenic 50.0%
GGTTTGAGGGGGAAAATGAG+AGG + chr1.3:19527901-19527920 None:intergenic 50.0%
GTAACACGGTTCCGACAATG+AGG + chr1.3:19528929-19528948 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG - chr1.3:19528915-19528934 MS.gene32582:intron 50.0%
GTCTGAGAGGAAAAGTAGGG+AGG + chr1.3:19527986-19528005 None:intergenic 50.0%
TAAGGGTTATTCGCGGTGTG+AGG - chr1.3:19528402-19528421 MS.gene32582:intron 50.0%
TAATCGGATAGGGGTCTGAG+AGG + chr1.3:19527999-19528018 None:intergenic 50.0%
TACGGGGGGAAATCAGATAG+CGG + chr1.3:19528035-19528054 None:intergenic 50.0%
TCGGAAAATCTCCGCCATTC+TGG + chr1.3:19528183-19528202 None:intergenic 50.0%
TCTTTGGCCCAGTGGAAAAG+TGG + chr1.3:19527765-19527784 None:intergenic 50.0%
TGAGGCGGACAACTACAAGA+AGG + chr1.3:19528911-19528930 None:intergenic 50.0%
TGCGACAGGTTGTCAATGTG+AGG - chr1.3:19528778-19528797 MS.gene32582:intron 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG - chr1.3:19528997-19529016 MS.gene32582:intron 50.0%
TTCATAACCTCACCAGCAGG+AGG + chr1.3:19526693-19526712 None:intergenic 50.0%
TTCCGACGCTCATTCACTGA+AGG - chr1.3:19526552-19526571 MS.gene32582:CDS 50.0%
TTCGAACAGGTGGACGGAAT+GGG - chr1.3:19529132-19529151 MS.gene32582:intron 50.0%
TTGAGGGGGAAAATGAGAGG+AGG + chr1.3:19527898-19527917 None:intergenic 50.0%
TTTCGAACAGGTGGACGGAA+TGG - chr1.3:19529131-19529150 MS.gene32582:intron 50.0%
TTTGGCCCAGTGGAAAAGTG+GGG + chr1.3:19527763-19527782 None:intergenic 50.0%
! AGATCTAGGGAGACTGGTTG+GGG - chr1.3:19528983-19529002 MS.gene32582:intron 50.0%
! ATCAGATAGCGGTATGAGGG+GGG + chr1.3:19528024-19528043 None:intergenic 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG - chr1.3:19528860-19528879 MS.gene32582:intron 50.0%
! GTAAGCTCTTGATGGTCCGT+AGG - chr1.3:19527433-19527452 MS.gene32582:CDS 50.0%
! GTATGGAGCGTGTCGGTATA+AGG - chr1.3:19528660-19528679 MS.gene32582:intron 50.0%
! GTGGGAATCTTGCTATGGAG+AGG - chr1.3:19528357-19528376 MS.gene32582:intron 50.0%
! TCAAAGGGTATGGAGCGTGT+CGG - chr1.3:19528653-19528672 MS.gene32582:intron 50.0%
!! TGGTGGTGGTTGGTTGTTCT+AGG + chr1.3:19528139-19528158 None:intergenic 50.0%
AACGGAGCAGGCAAGGAAAC+GGG + chr1.3:19527855-19527874 None:intergenic 55.0%
AATAATGCCCCTCCTCCTGC+TGG - chr1.3:19526678-19526697 MS.gene32582:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG + chr1.3:19528926-19528945 None:intergenic 55.0%
ATAACCTCACCAGCAGGAGG+AGG + chr1.3:19526690-19526709 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG - chr1.3:19528140-19528159 MS.gene32582:intron 55.0%
TAACCTCACCAGCAGGAGGA+GGG + chr1.3:19526689-19526708 None:intergenic 55.0%
TCCTGTCCACCAGCAGAAAC+CGG + chr1.3:19528299-19528318 None:intergenic 55.0%
TCGAACAGGTGGACGGAATG+GGG - chr1.3:19529133-19529152 MS.gene32582:intron 55.0%
! TCAGATAGCGGTATGAGGGG+GGG + chr1.3:19528023-19528042 None:intergenic 55.0%
! TGTGAGGGCTTTTGTGGGGA+AGG - chr1.3:19528794-19528813 MS.gene32582:intron 55.0%
!! CAACGCCCCACTTTTCCACT+GGG - chr1.3:19527755-19527774 MS.gene32582:CDS 55.0%
!! TGGAAAAGTGGGGCGTTGCT+TGG + chr1.3:19527753-19527772 None:intergenic 55.0%
AACCTCACCAGCAGGAGGAG+GGG + chr1.3:19526688-19526707 None:intergenic 60.0%
AGGGGGGGGTAATCGGATAG+GGG + chr1.3:19528008-19528027 None:intergenic 60.0%
CGGTATGAGGGGGGGGTAAT+CGG + chr1.3:19528015-19528034 None:intergenic 60.0%
GAGGGGGGGGTAATCGGATA+GGG + chr1.3:19528009-19528028 None:intergenic 60.0%
TGAGGGGGGGGTAATCGGAT+AGG + chr1.3:19528010-19528029 None:intergenic 60.0%
TGCATGGGTTCGATCCCCTG+TGG + chr1.3:19527723-19527742 None:intergenic 60.0%
! CAGATAGCGGTATGAGGGGG+GGG + chr1.3:19528022-19528041 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG - chr1.3:19528990-19529009 MS.gene32582:intron 60.0%
! TCCGGTTTCTGCTGGTGGAC+AGG - chr1.3:19528295-19528314 MS.gene32582:intron 60.0%
!! GCAACGCCCCACTTTTCCAC+TGG - chr1.3:19527754-19527773 MS.gene32582:CDS 60.0%
CGTCGACGCCGCCAGAATGG+CGG - chr1.3:19528169-19528188 MS.gene32582:intron 70.0%
TGCCCCTCCTCCTGCTGGTG+AGG - chr1.3:19526683-19526702 MS.gene32582:CDS 70.0%
!! CATTCTGGCGGCGTCGACGC+CGG + chr1.3:19528168-19528187 None:intergenic 70.0%
CCAACCACCACCACCGGCGC+CGG - chr1.3:19528146-19528165 MS.gene32582:intron 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG - chr1.3:19528166-19528185 MS.gene32582:intron 75.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG + chr1.3:19528149-19528168 None:intergenic 80.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG + chr1.3:19528153-19528172 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG + chr1.3:19528156-19528175 None:intergenic 85.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG + chr1.3:19528162-19528181 None:intergenic 90.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG + chr1.3:19528159-19528178 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 19526540 19529426 19526540 ID=MS.gene32582
chr1.3 mRNA 19526540 19529426 19526540 ID=MS.gene32582.t1;Parent=MS.gene32582
chr1.3 exon 19529218 19529426 19529218 ID=MS.gene32582.t1.exon1;Parent=MS.gene32582.t1
chr1.3 CDS 19529218 19529426 19529218 ID=cds.MS.gene32582.t1;Parent=MS.gene32582.t1
chr1.3 exon 19526540 19527962 19526540 ID=MS.gene32582.t1.exon2;Parent=MS.gene32582.t1
chr1.3 CDS 19526540 19527962 19526540 ID=cds.MS.gene32582.t1;Parent=MS.gene32582.t1
Gene Sequence

>MS.gene32582

ATGGCGGAGATTTTCCGACGCTCATTCACTGAAGGATTACAACGACAAATCCAAAACATTGATGCTGTTGATGAAAATCCAGATGCAAATGCAGATGCAAGAGCTATTGTTCCGGTTTCTGCTGGTGAGAATAATTACAATAATGCCCCTCCTCCTGCTGGTGAGGTTATGAATGTACGGAAACATAAAGGCAACTCCTTCCATTTAGCGTATTTATTTTGACCACTGTCTTCCATGTGATTTTATTGTACTTTCCTTTTGAGCTTTGTCGAATCTAAAATCCGTTCAATTGTTTTCACGGAGGTAAAGGCAACTCCTTCCATTTAGCGTATTTATTTTGACCACTGTCTTCCATGTGATTTTATTGTACTTTCCTTTTGAGCTTTGTCGAATCTACATTGTAAACTCTTTTAGCCATATATGAGCTACAGACATATTCATTATCAACTTCTATGTATTCTGGTCTTCCTAACACCCTGATGTACCTCAAATGATGGAAAGTTAAATATGTTGTGACTTTTGAAGATTGTTGTACGTGTTTAATATCTTAATTATTATTGTCTGCTTTGCAAACTGATTATTATCATGGTTGCTCTGATATACGTAAATCTTTCATGCCGTTTCTTTTGTTTCGAACATTCAAAACCTGTTTGCTCGTATTTTTTACATTCCATTTATTTTAAATTGGTTCTATTCTGTTGATTACATTCTTCAAAGTTTAAACCTTCCTTTTGTGAGACGCTCTTTTTGAGTCAAGCTTTTTGCAAAATGTAAGTCACATCGTAATGTAACGCATATGGCATTTTGGCGATTCTTTAGTTTAACCACTTGTTCTTTCCTTTAAACGTTTTTTTTATTTTTTTGCATTAAAATCATCAAACTCGAGAGTTTACGTAAGCTCTTGATGGTCCGTAGGCTTGACTCGTAGACTCATAACAGTTTATCTAATATAATAAACCTTCAAAGGATATTTTCATAATTCATAATTCATAACATATCTACTATAAATCTATAATCATATATGCCAGTGGCAGAGTTTGGTATGATTCTATGAGGGGCCAAATATTCAGATATAAGCCAGTGGCAGAGTTTCATATGATTCTGACTCCAAGTATTTGCATTTTTGAGACCTTATTTGTTTTTGCACATGAAAAATTAAAAGCGATGCAAAACATATAGACCACAGGGGATCGAACCCATGCACACTTTACCAAGCAACGCCCCACTTTTCCACTGGGCCAAAGAGAAAGTTACACTATAAATACAGCAATGCTATCCTAGTTTGGCTATTAGGTTAATAGCGGCTGCTATACCCGTTTCCTTGCCTGCTCCGTTTTTGTTCATGTTCAAGTTTTCCTCCTCTCATTTTCCCCCTCAAACCCCTACCTGTTTTGATATTTTCTCATCTGTTAGCCATTATTTTCCCCTTTGTTTTGATATTATCCTCCCTACTTTTCCTCTCAGACCCCTATCCGATTACCCCCCCCTCATACCGCTATCTGATTTCCCCCCGTATGTTTCTTTGGCTTTTGTTGGTATTTCAAGTCTAAGTCTAAACCTAAATCTAAGTCTGAACCTAGATTTTGTTTCTCAAGGCCTAGAACAACCAACCACCACCACCGGCGCCGGCGTCGACGCCGCCAGAATGGCGGAGATTTTCCGACGCTCATTCACTGAAGGATTACAACGACAAATCCAAAACATTGATGCTGTTGATGAAAATCCAGATGCAAATGCAGATGCAAGAGCTATTGTTCCGGTTTCTGCTGGTGGACAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGCTGGAAGGTGGGAATCTTGCTATGGAGAGGAGTATGCATTATGGGATTGAGGTAAGGGTTATTCGCGGTGTGAGGTATGAAGGTACTTCTTCGACTTCGGGTAAGGTTTATGTTTATGATGGATTGTATAGGATTATTGAATGCTGGTTTGATGTTGGTAAAAGTGGTTTTGGTGTTTTTAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTTTAAAGGAGGCTTTTTTACTTAGGAGAGATCCTTTGTGTTATAAACCTATGTGTGTTATATCTCTTGATATTTCAAAGGGTATGGAGCGTGTCGGTATAAGGCTTTTTAATGATATTGATAAATGTAATGATCCGATGTGTTTTGAGTATCTTCCTAGGGCTACTTTTCCACACTTTGTGTTTCATGAAAGTGGGAATGCGACAGGTTGTCAATGTGAGGGCTTTTGTGGGGAAGGATGTTTTTGTTTCATAAAAAATGGAAATGACTTTCCTTACAGTCAAAGCGGGCTTCTCTTGAAAGGAAAGCCGGTCATTTTTGAATGTGGTCCTTCTTGTAGTTGTCCGCCTCATTGTCGGAACCGTGTTACGCAAAAAGGGCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGTGCATTTATATGCGAGTACACTGGGGTTGTTCTGACAAGGGAGCAATCAGAAATTATGACCATGAGTGGTGATTCATTAATATATCCGAATCGTTTTTCGAACAGGTGGACGGAATGGGGTAATTTATCTCTGATTCAAGATGGTTATGTGCCTCCTTCGTATCCATCAATTCCTCCTTTGGATTTTTCTCTTGATGTGTCCAGAATGAGGAATGTGGCTTGCTATATAAGTCATAGCTCAACTCCTAATGTGATGGTTCAGTTTGTTTTGTATGATCATAATAATTTGATGTTCCCTCACATTATGCTGTTTGCGATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGATTATGGTGTAGCTGATGATGAGTTGACTGGCAAGCTC
Protein sequence

>MS.gene32582.t1

MAEIFRRSFTEGLQRQIQNIDAVDENPDANADARAIVPVSAGENNYNNAPPPAGEVMNVRKHKGNSFHLAPLSDYPPLIPLSDFPPYVSLAFVGISSLSLNLNLSLNLDFVSQGLEQPTTTTGAGVDAARMAEIFRRSFTEGLQRQIQNIDAVDENPDANADARAIVPVSAGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSTSGKVYVYDGLYRIIECWFDVGKSGFGVFKFKLWRIDGQAKMGSLILKEAFLLRRDPLCYKPMCVISLDISKGMERVGIRLFNDIDKCNDPMCFEYLPRATFPHFVFHESGNATGCQCEGFCGEGCFCFIKNGNDFPYSQSGLLLKGKPVIFECGPSCSCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQSEIMTMSGDSLIYPNRFSNRWTEWGNLSLIQDGYVPPSYPSIPPLDFSLDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLREFSLDYGVADDELTGKL